Psyllid ID: psy17315
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | 2.2.26 [Sep-21-2011] | |||||||
| Q8SWU7 | 397 | GTP-binding protein CG135 | yes | N/A | 0.484 | 0.685 | 0.667 | 1e-105 | |
| Q7ZWM6 | 396 | Obg-like ATPase 1 OS=Xeno | N/A | N/A | 0.468 | 0.664 | 0.644 | 9e-99 | |
| Q5ZM25 | 396 | Obg-like ATPase 1 OS=Gall | yes | N/A | 0.483 | 0.684 | 0.627 | 3e-96 | |
| Q66JG0 | 396 | Obg-like ATPase 1 OS=Xeno | yes | N/A | 0.468 | 0.664 | 0.630 | 6e-96 | |
| P91917 | 395 | Putative GTP-binding prot | yes | N/A | 0.483 | 0.686 | 0.610 | 2e-95 | |
| Q7ZU42 | 396 | Obg-like ATPase 1 OS=Dani | yes | N/A | 0.481 | 0.681 | 0.621 | 3e-95 | |
| A0JPJ7 | 396 | Obg-like ATPase 1 OS=Ratt | yes | N/A | 0.470 | 0.666 | 0.615 | 1e-93 | |
| Q2HJ33 | 396 | Obg-like ATPase 1 OS=Bos | yes | N/A | 0.483 | 0.684 | 0.606 | 4e-93 | |
| Q9NTK5 | 396 | Obg-like ATPase 1 OS=Homo | yes | N/A | 0.483 | 0.684 | 0.606 | 4e-93 | |
| Q5R821 | 396 | Obg-like ATPase 1 OS=Pong | yes | N/A | 0.483 | 0.684 | 0.603 | 1e-92 |
| >sp|Q8SWU7|Y1354_DROME GTP-binding protein CG1354 OS=Drosophila melanogaster GN=CG1354 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/295 (66%), Positives = 227/295 (76%), Gaps = 23/295 (7%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFED DVTHVEGEV+PVRD+EII+EELRLKD E++ K ++K+EK+V RG DKKLKPEY
Sbjct: 124 RAFEDPDVTHVEGEVDPVRDLEIISEELRLKDEENLLKNLDKLEKVVARGGDKKLKPEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D+++KIK + + KRH R+ DW+ DIE LNK LT+K
Sbjct: 183 --------------------DSMLKIKDILID-QKRHLRFEDWNAHDIEALNKYLFLTSK 221
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYLVNLS KD+I+KKNKWLPKIKEW+D NDPGA +IPFSG FEHQL + + ER+ Y
Sbjct: 222 PVIYLVNLSDKDFIRKKNKWLPKIKEWIDKNDPGALLIPFSGAFEHQLTEKDELERKAYE 281
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
E K S+L+KI+ GYK LQL+YFFTAG DEVKAWTIQKGTKAPQAAGRIHTDFEKGFI
Sbjct: 282 TETKCKSMLEKIVVTGYKGLQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 341
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVMHF+DFK GSEA +AAGKYRQQGR YTVEDGDIIFFKFNAGAGL KK
Sbjct: 342 MAEVMHFEDFKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKK 396
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q7ZWM6|OLA1_XENLA Obg-like ATPase 1 OS=Xenopus laevis GN=ola1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 185/287 (64%), Positives = 217/287 (75%), Gaps = 24/287 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAF+DDD+ HVEG VNPVRDIEII EELRLKD E I ++K+EK+ RG DKKLKPEY
Sbjct: 125 RAFDDDDIIHVEGNVNPVRDIEIIREELRLKDEEMIIAALDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARY-GDWSNADIEHLNKLNLLTA 384
D + K+K +V + +K H RY DW++ +I+ LNK LT+
Sbjct: 184 --------------------DIMCKVKTWVID-EKNHVRYYHDWNDKEIDVLNKYLFLTS 222
Query: 385 KTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444
K IYL+NLS KDYI+KKNKWL KIKEWVD NDPGA +IPFSGV E L DM D+E+Q+Y
Sbjct: 223 KPMIYLINLSEKDYIRKKNKWLIKIKEWVDKNDPGALVIPFSGVLELNLQDMSDEEKQKY 282
Query: 445 LDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGF 504
L+E+ SVL KII GY +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGF
Sbjct: 283 LEEKMTQSVLSKIIKTGYAALQLEYFFTAGPDEVRAWTIKKGTKAPQAAGKIHTDFEKGF 342
Query: 505 IMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
IMAEVM FDDFKE G+EA+ +AAGKYRQQGR YTVEDGDIIFFKFN
Sbjct: 343 IMAEVMKFDDFKEEGTEASVKAAGKYRQQGRNYTVEDGDIIFFKFNT 389
|
Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q5ZM25|OLA1_CHICK Obg-like ATPase 1 OS=Gallus gallus GN=OLA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 185/295 (62%), Positives = 216/295 (73%), Gaps = 24/295 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFEDDD+THVEG V+PVRDIEII+EELRLKD E I + I+K+EK+ RG DKKLKPEY
Sbjct: 125 RAFEDDDITHVEGSVDPVRDIEIIHEELRLKDEELITQSIDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D + KIK +V + K Y DW++ +I+ LNK T+K
Sbjct: 184 --------------------DVMCKIKTWVIDEKKAVRFYHDWNDKEIDVLNKHLFFTSK 223
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYLVNLS KDYI+KKNKWL KIKEWVD +DPGA +IPFSG E +L DM +E+Q+YL
Sbjct: 224 PMIYLVNLSEKDYIRKKNKWLIKIKEWVDKHDPGALVIPFSGALELKLQDMSAEEKQKYL 283
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+E S L KII GY +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFI
Sbjct: 284 EENMTQSALPKIIKAGYAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFI 343
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM ++DFKE GSEAA +AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 344 MAEVMKYEDFKEGGSEAAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
|
Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q66JG0|OLA1_XENTR Obg-like ATPase 1 OS=Xenopus tropicalis GN=ola1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 181/287 (63%), Positives = 214/287 (74%), Gaps = 24/287 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAF+DDD+ HVEG VNPVRDIEII+EELRLKD E I ++K+EK+ RG DKKLKPEY
Sbjct: 125 RAFDDDDIIHVEGSVNPVRDIEIIHEELRLKDEEMIIAALDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR-YGDWSNADIEHLNKLNLLTA 384
D + K+K ++ + +K H R Y DW++ +I+ LNK LT+
Sbjct: 184 --------------------DIMCKVKNWIID-EKNHVRFYHDWNDKEIDVLNKYLFLTS 222
Query: 385 KTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444
K IYLVNLS KDYI+KKNKWL KIKEWVD DP A +IPFSGV E L DM D+E+ +Y
Sbjct: 223 KPMIYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPCALVIPFSGVLELNLQDMSDEEKHKY 282
Query: 445 LDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGF 504
L E+ SVL KI+ GY +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGF
Sbjct: 283 LQEKVTQSVLSKIVKTGYAALQLEYFFTAGPDEVRAWTIKKGTKAPQAAGKIHTDFEKGF 342
Query: 505 IMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
IMAEVM FDDFKE GSE++ +AAGKYRQQGR YTVEDGDIIFFKFN
Sbjct: 343 IMAEVMKFDDFKEEGSESSVKAAGKYRQQGRNYTVEDGDIIFFKFNT 389
|
Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P91917|TG210_CAEEL Putative GTP-binding protein tag-210 OS=Caenorhabditis elegans GN=tag-210 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 24/295 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAF+DDDVTHVEGEV+PVRD+EII+ EL KD++ I+ ++K+EKL R DK K EY
Sbjct: 124 RAFDDDDVTHVEGEVDPVRDLEIISNELFAKDLQFIDGPLDKVEKLFTRANDKTKKIEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D LV++K C +K+ R W+ +IE LNK LTAK
Sbjct: 183 --------------------DTLVRVKK--CLEEKKPVRQELWNEKEIEILNKHLFLTAK 220
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
+YLVNLS KDYI+KKNKWLPKIK W+D ND GA +IPFSG FE +L+DMP+DERQ+YL
Sbjct: 221 PIVYLVNLSEKDYIRKKNKWLPKIKAWIDTNDAGAVLIPFSGAFELKLLDMPEDERQKYL 280
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
EQ TS LDKI+ GYK+LQL+YFFT+G+DEVKAWTIQ GT AP+AAGRIHTDFEKGFI
Sbjct: 281 KEQGVTSNLDKIVHTGYKALQLEYFFTSGEDEVKAWTIQVGTPAPKAAGRIHTDFEKGFI 340
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM D E G EA C+A GKYRQQG+ Y V+DGD+IFFKFNAGAGL KKK
Sbjct: 341 MAEVMKVADLIELGDEAKCKAGGKYRQQGKTYIVQDGDVIFFKFNAGAGLQAKKK 395
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q7ZU42|OLA1_DANRE Obg-like ATPase 1 OS=Danio rerio GN=ola1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 184/296 (62%), Positives = 219/296 (73%), Gaps = 26/296 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFED+D+ HVEG V+PVRDIEII+EELR+KD E I I+K+EK RG DKKLKPEY
Sbjct: 125 RAFEDEDIIHVEGCVDPVRDIEIIHEELRMKDEEMIGPIIDKLEKTAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARY-GDWSNADIEHLNKLNLLTA 384
D + K+K++V + +K+H RY +W++ +IE LNK LT+
Sbjct: 184 --------------------DIMCKVKSWVVD-EKKHVRYYHEWNDKEIEVLNKHLFLTS 222
Query: 385 KTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444
K IYLVNLS KDYI+KKNKWL KIKEWVDA+DPGA +IP SG FE + DM D+E+Q+Y
Sbjct: 223 KPMIYLVNLSEKDYIRKKNKWLVKIKEWVDAHDPGALVIPLSGGFESKYQDMSDEEKQKY 282
Query: 445 LDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGF 504
+E K S+L KII GY +LQL+YFFTAG DEV+AWT++KGTKAPQAAG+IHTDFEKGF
Sbjct: 283 CEENKTQSILTKIIKSGYSALQLEYFFTAGPDEVRAWTVRKGTKAPQAAGKIHTDFEKGF 342
Query: 505 IMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
IMAEVM F DFKE GSE A +AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 343 IMAEVMKFTDFKEEGSENAAKAAGKYRQQGRNYIVEDGDIIFFKFNTPN--QPKKK 396
|
Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|A0JPJ7|OLA1_RAT Obg-like ATPase 1 OS=Rattus norvegicus GN=Ola1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 212/286 (74%), Gaps = 22/286 (7%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFEDDD+THVEG V+P+RDIEII+EEL+LKD E I I+K+EK+ RG DKKLKPEY
Sbjct: 125 RAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D + K+K++V + K Y DW++ +IE LNK LLT+K
Sbjct: 184 --------------------DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLLLTSK 223
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
+YLVNLS KDYI+KKNKWL KIKEWVD +DPGA +IPFSG E +L ++ +ERQ+YL
Sbjct: 224 PMVYLVNLSEKDYIRKKNKWLIKIKEWVDKSDPGALVIPFSGALELKLQELSAEERQKYL 283
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+ S L KII G+ +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFI
Sbjct: 284 EANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFI 343
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
MAEVM +DDFK+ GSE A +AAGKYRQQGR Y VEDGDIIFFKFN
Sbjct: 344 MAEVMKYDDFKDEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNT 389
|
Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q2HJ33|OLA1_BOVIN Obg-like ATPase 1 OS=Bos taurus GN=OLA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (878), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 179/295 (60%), Positives = 214/295 (72%), Gaps = 24/295 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFEDDD+THVEG V+PVRDIEII+EEL+LKD E + I+K+EK+ RG DKKLKPEY
Sbjct: 125 RAFEDDDITHVEGSVDPVRDIEIIHEELQLKDEEMVGPIIDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D + K+K++V + K Y DW++ +IE LNK LT+K
Sbjct: 184 --------------------DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSK 223
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
+YLVNLS KDYI+KKNKWL KIKEWVD DPGA +IPFSG E +L ++ +ERQ+YL
Sbjct: 224 PMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELRLQELSAEERQKYL 283
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+ S L KII G+ +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFI
Sbjct: 284 EANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFI 343
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM ++DFKE GSE A +AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 344 MAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
|
Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q9NTK5|OLA1_HUMAN Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 342 bits (878), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 179/295 (60%), Positives = 214/295 (72%), Gaps = 24/295 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFEDDD+THVEG V+P+RDIEII+EEL+LKD E I I+K+EK+ RG DKKLKPEY
Sbjct: 125 RAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D + K+K++V + K Y DW++ +IE LNK LT+K
Sbjct: 184 --------------------DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSK 223
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
+YLVNLS KDYI+KKNKWL KIKEWVD DPGA +IPFSG E +L ++ +ERQ+YL
Sbjct: 224 PMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYL 283
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+ S L KII G+ +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFI
Sbjct: 284 EANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFI 343
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM ++DFKE GSE A +AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 344 MAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
|
Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q5R821|OLA1_PONAB Obg-like ATPase 1 OS=Pongo abelii GN=OLA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/295 (60%), Positives = 214/295 (72%), Gaps = 24/295 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFEDDD+THVEG V+P+RDIEII+EEL+LKD E I I+K+EK+ RG DKKLKPEY
Sbjct: 125 RAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D + K+K++V + K Y DW++ +IE LNK LT+K
Sbjct: 184 --------------------DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSK 223
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
+YLVNLS KDYI+KKNKWL KIKEWVD DPGA +IPFSG E +L ++ +ERQ+YL
Sbjct: 224 PMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYL 283
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+ S L KII G+ +LQL+YFFTAG +EV+AWTI+KGTKAPQAAG+IHTDFEKGFI
Sbjct: 284 EANMTQSALPKIIKAGFAALQLEYFFTAGPEEVRAWTIRKGTKAPQAAGKIHTDFEKGFI 343
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM ++DFKE GSE A +AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 344 MAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
|
Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| 380022453 | 397 | PREDICTED: GTP-binding protein CG1354-li | 0.484 | 0.685 | 0.684 | 1e-109 | |
| 350426336 | 397 | PREDICTED: GTP-binding protein CG1354-li | 0.484 | 0.685 | 0.688 | 1e-108 | |
| 357613126 | 2193 | GTP binding protein [Danaus plexippus] | 0.491 | 0.125 | 0.664 | 1e-108 | |
| 340723660 | 397 | PREDICTED: GTP-binding protein CG1354-li | 0.484 | 0.685 | 0.688 | 1e-108 | |
| 156545814 | 397 | PREDICTED: GTP-binding protein CG1354-li | 0.484 | 0.685 | 0.684 | 1e-108 | |
| 270013135 | 325 | hypothetical protein TcasGA2_TC011700 [T | 0.484 | 0.836 | 0.696 | 1e-108 | |
| 383857463 | 397 | PREDICTED: GTP-binding protein CG1354-li | 0.484 | 0.685 | 0.684 | 1e-108 | |
| 110762023 | 397 | PREDICTED: GTP-binding protein CG1354-li | 0.484 | 0.685 | 0.681 | 1e-108 | |
| 189241344 | 399 | PREDICTED: similar to GTP binding protei | 0.484 | 0.681 | 0.696 | 1e-108 | |
| 389611703 | 397 | GTP-binding protein [Papilio xuthus] | 0.495 | 0.700 | 0.663 | 1e-108 |
| >gi|380022453|ref|XP_003695060.1| PREDICTED: GTP-binding protein CG1354-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/295 (68%), Positives = 231/295 (78%), Gaps = 23/295 (7%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAF+DDDVTHVEG+VNPVRD+EII+EELRLKD+E + + K+EKLV RG DKKLKPEY
Sbjct: 124 RAFDDDDVTHVEGDVNPVRDLEIISEELRLKDIEFLNGHLEKLEKLVVRGNDKKLKPEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D L+K+K + + +KRH R+ DWS DIE LNK LT+K
Sbjct: 183 --------------------DTLLKVKGVMVD-EKRHIRFADWSATDIEVLNKYLFLTSK 221
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYL+NLS KDY++KKNKWL KIKEWVD NDPGA +IPFSGVFE++L+DM + ER +YL
Sbjct: 222 PVIYLINLSEKDYVRKKNKWLIKIKEWVDKNDPGAILIPFSGVFENKLLDMNEAERGKYL 281
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+E K TS LDKII QGYK+LQLQYFFTAG DEVKAWTIQ+GTKAPQAAG+IHTDFEKGFI
Sbjct: 282 EENKVTSALDKIIVQGYKALQLQYFFTAGHDEVKAWTIQRGTKAPQAAGKIHTDFEKGFI 341
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM FDDFK GSEAA +AAGKYRQQGR Y VEDGDIIFFKFNAGAGL KK
Sbjct: 342 MAEVMKFDDFKNEGSEAAVKAAGKYRQQGRNYVVEDGDIIFFKFNAGAGLKDAKK 396
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350426336|ref|XP_003494408.1| PREDICTED: GTP-binding protein CG1354-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/295 (68%), Positives = 228/295 (77%), Gaps = 23/295 (7%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAF+DDDVTHVEG+VNPVRD+EII+EELRLKD+E + + K+EKLV RG DKKLKPEY
Sbjct: 124 RAFDDDDVTHVEGDVNPVRDLEIISEELRLKDIEFLNGHLEKLEKLVVRGNDKKLKPEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D L+K+K + + +KRH R+ DWS DIE LNK LT+K
Sbjct: 183 --------------------DTLLKVKGIMVD-EKRHIRFADWSATDIEALNKYLFLTSK 221
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYLVNLS KDYI+KKNKWL KIKEWVD NDPGA +IPFSG FE++L DM D ER +Y
Sbjct: 222 PVIYLVNLSEKDYIRKKNKWLIKIKEWVDKNDPGAILIPFSGTFENKLFDMDDAERAKYQ 281
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+E K TS LDKII QGYK+LQLQYFFTAG DEVKAWTIQKGTKAPQAAG+IHTDFEKGFI
Sbjct: 282 EENKVTSALDKIIVQGYKALQLQYFFTAGHDEVKAWTIQKGTKAPQAAGKIHTDFEKGFI 341
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM FDDFK GSEAA +AAGKYRQQGR Y VEDGDI+FFKFNAGAGL KK
Sbjct: 342 MAEVMKFDDFKNEGSEAAVKAAGKYRQQGRNYVVEDGDIVFFKFNAGAGLKDAKK 396
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357613126|gb|EHJ68331.1| GTP binding protein [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/301 (66%), Positives = 232/301 (77%), Gaps = 25/301 (8%)
Query: 261 FNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKK 319
FN+ RAF+D++V HV+GEVNP+RD+E I EELRLKD E + + I K++++V RG DKK
Sbjct: 1916 FNLC--RAFDDENVIHVDGEVNPIRDLETIGEELRLKDEEQLMQNIEKLDRVVNRGGDKK 1973
Query: 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKL 379
LKPEY +AL KIK + E +K+H R+GDWS ADIE LNK
Sbjct: 1974 LKPEY---------------------EALAKIKTILVE-EKKHIRFGDWSAADIEVLNKY 2011
Query: 380 NLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439
LT+K +YLVNLS KDYI+KKNKWLPK+KEW+D NDPGA +IPFSG E +L+DM D
Sbjct: 2012 LFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGAPLIPFSGALESKLLDMEPD 2071
Query: 440 ERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTD 499
ER+++L E TS LDKII QGYKSLQL+YFFTAG DEVKAWTIQKGTKAPQAAGRIHTD
Sbjct: 2072 EREKFLKENNITSALDKIIVQGYKSLQLEYFFTAGADEVKAWTIQKGTKAPQAAGRIHTD 2131
Query: 500 FEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKK 559
FEKGFIMAEVMHF DFKE GSE+AC+AAGKYRQQGR Y VEDGDIIFFKFNAGAGL K
Sbjct: 2132 FEKGFIMAEVMHFKDFKEEGSESACKAAGKYRQQGRNYVVEDGDIIFFKFNAGAGLKDAK 2191
Query: 560 K 560
K
Sbjct: 2192 K 2192
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340723660|ref|XP_003400207.1| PREDICTED: GTP-binding protein CG1354-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/295 (68%), Positives = 228/295 (77%), Gaps = 23/295 (7%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAF+DDDVTHVEG+VNPVRD+EII+EELRLKD+E + + K+EKLV RG DKKLKPEY
Sbjct: 124 RAFDDDDVTHVEGDVNPVRDLEIISEELRLKDIEFLNGHLEKLEKLVVRGNDKKLKPEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D L+K+K + + +KRH R+ DWS DIE LNK LT+K
Sbjct: 183 --------------------DTLLKVKGIMVD-EKRHIRFADWSATDIEVLNKYLFLTSK 221
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYLVNLS KDYI+KKNKWL KIKEWVD NDPGA +IPFSG FE++L DM D ER +Y
Sbjct: 222 PVIYLVNLSEKDYIRKKNKWLIKIKEWVDKNDPGAILIPFSGTFENKLFDMDDAERAKYQ 281
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+E K TS LDKII QGYK+LQLQYFFTAG DEVKAWTIQKGTKAPQAAG+IHTDFEKGFI
Sbjct: 282 EENKVTSALDKIIVQGYKALQLQYFFTAGHDEVKAWTIQKGTKAPQAAGKIHTDFEKGFI 341
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM FDDFK GSEAA +AAGKYRQQGR Y VEDGDI+FFKFNAGAGL KK
Sbjct: 342 MAEVMKFDDFKNEGSEAAVKAAGKYRQQGRNYVVEDGDIVFFKFNAGAGLKDAKK 396
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156545814|ref|XP_001607760.1| PREDICTED: GTP-binding protein CG1354-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/295 (68%), Positives = 227/295 (76%), Gaps = 23/295 (7%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFEDDDVTH+EGEVNPVRD+EII+EELRLKDVE + + K+EKLV RG DKKLKPEY
Sbjct: 124 RAFEDDDVTHIEGEVNPVRDLEIISEELRLKDVEFLNVHLEKLEKLVVRGNDKKLKPEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D L+K+K + E DK H R+ DWS DIE LNK LT+K
Sbjct: 183 --------------------DCLLKVKQVLVE-DKNHIRFADWSANDIEVLNKYLFLTSK 221
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYLVNLS KDYI+KKNKWL KIKEWVD NDPGA +IPFSG FE++ +DM + ER +Y+
Sbjct: 222 PMIYLVNLSEKDYIRKKNKWLIKIKEWVDKNDPGAALIPFSGAFENKFIDMDEGERAKYV 281
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+E K +S LDKII QGYK+LQL YFFTAG DEVKAWTIQKGTKAPQAAGRIHTDFEKGFI
Sbjct: 282 EESKVSSALDKIIVQGYKALQLMYFFTAGHDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 341
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM F+DFK GSE+A +AAGKYRQQGR Y VEDGDIIFFKFNAGAGL KK
Sbjct: 342 MAEVMKFEDFKNEGSESAVKAAGKYRQQGRNYVVEDGDIIFFKFNAGAGLKDAKK 396
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270013135|gb|EFA09583.1| hypothetical protein TcasGA2_TC011700 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/297 (69%), Positives = 230/297 (77%), Gaps = 25/297 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFEDDDVTHVEGEVNPVRD++II EELRLKD + + K + K+E+ V RG DKKLKPEY
Sbjct: 50 RAFEDDDVTHVEGEVNPVRDLDIIAEELRLKDEDTLLKNMEKLERTVLRGGDKKLKPEY- 108
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D LVKI+ +C G+K+H R+GDW DIE LNK LT+K
Sbjct: 109 --------------------DTLVKIQGVLC-GEKKHIRFGDWDAKDIEVLNKYLFLTSK 147
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVD-MPDD-ERQR 443
IYLVNLS KDYIKKKNKWL KIKEWVD NDPG+ IIPFSG FEH+LV+ P+ ER++
Sbjct: 148 PTIYLVNLSEKDYIKKKNKWLIKIKEWVDKNDPGSLIIPFSGAFEHKLVEEYPEAAERKK 207
Query: 444 YLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKG 503
YL+E TS LDKII QGYK+LQL+YFFTAG DEVKAWTIQKGTKAPQAAGRIHTDFEKG
Sbjct: 208 YLEELNTTSALDKIIVQGYKALQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKG 267
Query: 504 FIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
FIMAEVM F DFKE GSEAAC+AAGKYRQQGR Y VEDGDIIFFKFNAGAGL KK
Sbjct: 268 FIMAEVMKFSDFKEEGSEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGAGLKDAKK 324
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857463|ref|XP_003704224.1| PREDICTED: GTP-binding protein CG1354-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/295 (68%), Positives = 229/295 (77%), Gaps = 23/295 (7%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAF+DDDVTHVEG+VNPVRD+EII+EELRLKD+E + + K+EKLV RG DKKLKPEY
Sbjct: 124 RAFDDDDVTHVEGDVNPVRDLEIISEELRLKDIEFLNGHLEKLEKLVVRGNDKKLKPEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D L+K+K + + +KRH R+ DWS DIE LNK LT+K
Sbjct: 183 --------------------DTLLKVKGVMVD-EKRHIRFADWSATDIEVLNKYLFLTSK 221
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYLVNLS KDYI+KKNKWL KIKEWVD NDPGA +IPFSG FE++L+DM + ER +YL
Sbjct: 222 PVIYLVNLSEKDYIRKKNKWLIKIKEWVDKNDPGAVLIPFSGAFENKLLDMDEVERAKYL 281
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+E K TS LDKII QGYK+LQLQYFFTAG DEVKAWTIQKGTKAPQAAG+IHTDFEKGFI
Sbjct: 282 EENKVTSALDKIIVQGYKALQLQYFFTAGHDEVKAWTIQKGTKAPQAAGKIHTDFEKGFI 341
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM +DDFK GSEA +AAGKYRQQGR Y VEDGDIIFFKFNAGAGL KK
Sbjct: 342 MAEVMKYDDFKNEGSEAGVKAAGKYRQQGRNYVVEDGDIIFFKFNAGAGLKDAKK 396
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110762023|ref|XP_396711.3| PREDICTED: GTP-binding protein CG1354-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/295 (68%), Positives = 230/295 (77%), Gaps = 23/295 (7%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAF+DDDVTHVEG+VNPVRD+EII+EELRLKD+E + + K+EKLV RG DKKLKPEY
Sbjct: 124 RAFDDDDVTHVEGDVNPVRDLEIISEELRLKDIEFLNGHLEKLEKLVVRGNDKKLKPEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D L+K+K + + +KRH R+ DWS DIE LNK LT+K
Sbjct: 183 --------------------DTLLKVKGVMVD-EKRHIRFADWSATDIEVLNKYLFLTSK 221
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYL+NLS KDY++KKNKWL KIKEWVD NDPGA +IPFSG FE++L+DM + ER +YL
Sbjct: 222 PVIYLINLSEKDYVRKKNKWLIKIKEWVDKNDPGAILIPFSGAFENKLLDMNEAERGKYL 281
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+E K TS LDKII QGYK+LQLQYFFTAG DEVKAWTIQ+GTKAPQAAG+IHTDFEKGFI
Sbjct: 282 EEGKVTSALDKIIVQGYKALQLQYFFTAGHDEVKAWTIQRGTKAPQAAGKIHTDFEKGFI 341
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM FDDFK GSEAA +AAGKYRQQGR Y VEDGDIIFFKFNAGAGL KK
Sbjct: 342 MAEVMKFDDFKNEGSEAAVKAAGKYRQQGRNYVVEDGDIIFFKFNAGAGLKDAKK 396
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189241344|ref|XP_969865.2| PREDICTED: similar to GTP binding protein [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/297 (69%), Positives = 230/297 (77%), Gaps = 25/297 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-DKKLKPEYV 325
RAFEDDDVTHVEGEVNPVRD++II EELRLKD + + K + K+E+ V RG DKKLKPEY
Sbjct: 124 RAFEDDDVTHVEGEVNPVRDLDIIAEELRLKDEDTLLKNMEKLERTVLRGGDKKLKPEY- 182
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D LVKI+ +C G+K+H R+GDW DIE LNK LT+K
Sbjct: 183 --------------------DTLVKIQGVLC-GEKKHIRFGDWDAKDIEVLNKYLFLTSK 221
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVD-MPDD-ERQR 443
IYLVNLS KDYIKKKNKWL KIKEWVD NDPG+ IIPFSG FEH+LV+ P+ ER++
Sbjct: 222 PTIYLVNLSEKDYIKKKNKWLIKIKEWVDKNDPGSLIIPFSGAFEHKLVEEYPEAAERKK 281
Query: 444 YLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKG 503
YL+E TS LDKII QGYK+LQL+YFFTAG DEVKAWTIQKGTKAPQAAGRIHTDFEKG
Sbjct: 282 YLEELNTTSALDKIIVQGYKALQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKG 341
Query: 504 FIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
FIMAEVM F DFKE GSEAAC+AAGKYRQQGR Y VEDGDIIFFKFNAGAGL KK
Sbjct: 342 FIMAEVMKFSDFKEEGSEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGAGLKDAKK 398
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|389611703|dbj|BAM19435.1| GTP-binding protein [Papilio xuthus] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/303 (66%), Positives = 232/303 (76%), Gaps = 25/303 (8%)
Query: 259 TFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG-D 317
FN+ RAF+D+DV HV+GEVNPVRD+E I EELRLKD E + + I K+E++V RG D
Sbjct: 118 AIFNLC--RAFDDEDVIHVDGEVNPVRDLETIGEELRLKDEEQLMQNIEKLERVVNRGAD 175
Query: 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLN 377
KKLKPEY DAL+KIKA + + +K+H R+GDWS ADIE LN
Sbjct: 176 KKLKPEY---------------------DALMKIKAILVD-EKKHIRFGDWSAADIEVLN 213
Query: 378 KLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP 437
+ LT+K +YLVNLS KDYI+KKNKWLPK+KEW+D NDPGA +IP SG E +L+DM
Sbjct: 214 RYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGAPLIPXSGALETKLMDME 273
Query: 438 DDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIH 497
+RQ +L EQ TS LDKII QGYK+LQL+YFFTAG DEVKAWTIQKGTKAPQAAGRIH
Sbjct: 274 PQDRQAFLKEQNITSALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGTKAPQAAGRIH 333
Query: 498 TDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNP 557
TDFEKGFIMAEVMHF DFKE G+EAAC+AAGKYRQQGR Y VEDGDIIFFKFNAGAGL
Sbjct: 334 TDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKYRQQGRNYVVEDGDIIFFKFNAGAGLKD 393
Query: 558 KKK 560
KK
Sbjct: 394 AKK 396
|
Source: Papilio xuthus Species: Papilio xuthus Genus: Papilio Family: Papilionidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| FB|FBgn0030151 | 397 | CG1354 [Drosophila melanogaste | 0.381 | 0.539 | 0.665 | 5.1e-118 | |
| WB|WBGene00012344 | 395 | ola-1 [Caenorhabditis elegans | 0.379 | 0.539 | 0.623 | 3.1e-112 | |
| UNIPROTKB|Q5ZM25 | 396 | OLA1 "Obg-like ATPase 1" [Gall | 0.379 | 0.537 | 0.613 | 1.3e-107 | |
| ZFIN|ZDB-GENE-030131-5063 | 396 | ola1 "Obg-like ATPase 1" [Dani | 0.377 | 0.535 | 0.620 | 3.5e-107 | |
| UNIPROTKB|Q2HJ33 | 396 | OLA1 "Obg-like ATPase 1" [Bos | 0.379 | 0.537 | 0.595 | 4.4e-103 | |
| UNIPROTKB|J3KQ32 | 416 | OLA1 "Obg-like ATPase 1" [Homo | 0.379 | 0.512 | 0.595 | 5.6e-103 | |
| UNIPROTKB|Q9NTK5 | 396 | OLA1 "Obg-like ATPase 1" [Homo | 0.379 | 0.537 | 0.595 | 5.6e-103 | |
| RGD|1307982 | 396 | Ola1 "Obg-like ATPase 1" [Ratt | 0.365 | 0.517 | 0.609 | 5.6e-103 | |
| MGI|MGI:1914309 | 396 | Ola1 "Obg-like ATPase 1" [Mus | 0.379 | 0.537 | 0.590 | 1.2e-102 | |
| UNIPROTKB|J9NT20 | 395 | OLA1 "Uncharacterized protein" | 0.377 | 0.536 | 0.590 | 2.1e-101 |
| FB|FBgn0030151 CG1354 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 5.1e-118, Sum P(3) = 5.1e-118
Identities = 143/215 (66%), Positives = 163/215 (75%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D+++KIK + + KRH R+ DW+ DIE LNK LT+K IYLVNLS KD+I
Sbjct: 183 DSMLKIKDILID-QKRHLRFEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKW 241
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
EW+D NDPGA +IPFSG FEHQL + + ER+ Y E K S+L+KI+ GYK L
Sbjct: 242 LPKIKEWIDKNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKIVVTGYKGL 301
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFTAG DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHF+DFK GSEA +
Sbjct: 302 QLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFEDFKAEGSEANAK 361
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
AAGKYRQQGR YTVEDGDIIFFKFNAGAGL KK
Sbjct: 362 AAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKK 396
|
|
| WB|WBGene00012344 ola-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 3.1e-112, Sum P(3) = 3.1e-112
Identities = 134/215 (62%), Positives = 157/215 (73%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D LV++K C +K+ R W+ +IE LNK LTAK +YLVNLS KDYI
Sbjct: 183 DTLVRVKK--CLEEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSEKDYIRKKNKW 240
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
W+D ND GA +IPFSG FE +L+DMP+DERQ+YL EQ TS LDKI+ GYK+L
Sbjct: 241 LPKIKAWIDTNDAGAVLIPFSGAFELKLLDMPEDERQKYLKEQGVTSNLDKIVHTGYKAL 300
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFT+G+DEVKAWTIQ GT AP+AAGRIHTDFEKGFIMAEVM D E G EA C+
Sbjct: 301 QLEYFFTSGEDEVKAWTIQVGTPAPKAAGRIHTDFEKGFIMAEVMKVADLIELGDEAKCK 360
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
A GKYRQQG+ Y V+DGD+IFFKFNAGAGL KKK
Sbjct: 361 AGGKYRQQGKTYIVQDGDVIFFKFNAGAGLQAKKK 395
|
|
| UNIPROTKB|Q5ZM25 OLA1 "Obg-like ATPase 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 132/215 (61%), Positives = 155/215 (72%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D + KIK +V + K Y DW++ +I+ LNK T+K IYLVNLS KDYI
Sbjct: 184 DVMCKIKTWVIDEKKAVRFYHDWNDKEIDVLNKHLFFTSKPMIYLVNLSEKDYIRKKNKW 243
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
EWVD +DPGA +IPFSG E +L DM +E+Q+YL+E S L KII GY +L
Sbjct: 244 LIKIKEWVDKHDPGALVIPFSGALELKLQDMSAEEKQKYLEENMTQSALPKIIKAGYAAL 303
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFIMAEVM ++DFKE GSEAA +
Sbjct: 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEGGSEAAVK 363
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 364 AAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
|
|
| ZFIN|ZDB-GENE-030131-5063 ola1 "Obg-like ATPase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 3.5e-107, Sum P(3) = 3.5e-107
Identities = 134/216 (62%), Positives = 161/216 (74%)
Query: 346 DALVKIKAFVCEGDKRHARY-GDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXX 404
D + K+K++V + +K+H RY +W++ +IE LNK LT+K IYLVNLS KDYI
Sbjct: 184 DIMCKVKSWVVD-EKKHVRYYHEWNDKEIEVLNKHLFLTSKPMIYLVNLSEKDYIRKKNK 242
Query: 405 XXXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKS 464
EWVDA+DPGA +IP SG FE + DM D+E+Q+Y +E K S+L KII GY +
Sbjct: 243 WLVKIKEWVDAHDPGALVIPLSGGFESKYQDMSDEEKQKYCEENKTQSILTKIIKSGYSA 302
Query: 465 LQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAAC 524
LQL+YFFTAG DEV+AWT++KGTKAPQAAG+IHTDFEKGFIMAEVM F DFKE GSE A
Sbjct: 303 LQLEYFFTAGPDEVRAWTVRKGTKAPQAAGKIHTDFEKGFIMAEVMKFTDFKEEGSENAA 362
Query: 525 RAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
+AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 363 KAAGKYRQQGRNYIVEDGDIIFFKFNTPN--QPKKK 396
|
|
| UNIPROTKB|Q2HJ33 OLA1 "Obg-like ATPase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.4e-103, Sum P(3) = 4.4e-103
Identities = 128/215 (59%), Positives = 154/215 (71%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D + K+K++V + K Y DW++ +IE LNK LT+K +YLVNLS KDYI
Sbjct: 184 DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKW 243
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
EWVD DPGA +IPFSG E +L ++ +ERQ+YL+ S L KII G+ +L
Sbjct: 244 LIKIKEWVDKYDPGALVIPFSGALELRLQELSAEERQKYLEANMTQSALPKIIKAGFAAL 303
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFIMAEVM ++DFKE GSE A +
Sbjct: 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVK 363
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 364 AAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
|
|
| UNIPROTKB|J3KQ32 OLA1 "Obg-like ATPase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 5.6e-103, Sum P(3) = 5.6e-103
Identities = 128/215 (59%), Positives = 154/215 (71%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D + K+K++V + K Y DW++ +IE LNK LT+K +YLVNLS KDYI
Sbjct: 204 DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKW 263
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
EWVD DPGA +IPFSG E +L ++ +ERQ+YL+ S L KII G+ +L
Sbjct: 264 LIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL 323
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFIMAEVM ++DFKE GSE A +
Sbjct: 324 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVK 383
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 384 AAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 416
|
|
| UNIPROTKB|Q9NTK5 OLA1 "Obg-like ATPase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 5.6e-103, Sum P(3) = 5.6e-103
Identities = 128/215 (59%), Positives = 154/215 (71%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D + K+K++V + K Y DW++ +IE LNK LT+K +YLVNLS KDYI
Sbjct: 184 DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKW 243
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
EWVD DPGA +IPFSG E +L ++ +ERQ+YL+ S L KII G+ +L
Sbjct: 244 LIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL 303
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFIMAEVM ++DFKE GSE A +
Sbjct: 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVK 363
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 364 AAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
|
|
| RGD|1307982 Ola1 "Obg-like ATPase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 5.6e-103, Sum P(3) = 5.6e-103
Identities = 125/205 (60%), Positives = 152/205 (74%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D + K+K++V + K Y DW++ +IE LNK LLT+K +YLVNLS KDYI
Sbjct: 184 DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLLLTSKPMVYLVNLSEKDYIRKKNKW 243
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
EWVD +DPGA +IPFSG E +L ++ +ERQ+YL+ S L KII G+ +L
Sbjct: 244 LIKIKEWVDKSDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL 303
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFIMAEVM +DDFK+ GSE A +
Sbjct: 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYDDFKDEGSENAVK 363
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFN 550
AAGKYRQQGR Y VEDGDIIFFKFN
Sbjct: 364 AAGKYRQQGRNYIVEDGDIIFFKFN 388
|
|
| MGI|MGI:1914309 Ola1 "Obg-like ATPase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 1.2e-102, Sum P(3) = 1.2e-102
Identities = 127/215 (59%), Positives = 154/215 (71%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D + K+K++V + K Y DW++ +IE LNK LT+K +YLVNLS KDYI
Sbjct: 184 DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKW 243
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
EWVD DPGA +IPFSG E +L ++ +ERQ+YL+ S L KII G+ +L
Sbjct: 244 LIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL 303
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFIMAEVM ++DFK+ GSE A +
Sbjct: 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKDEGSENAVK 363
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 364 AAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
|
|
| UNIPROTKB|J9NT20 OLA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 2.1e-101, Sum P(3) = 2.1e-101
Identities = 127/215 (59%), Positives = 153/215 (71%)
Query: 346 DALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIXXXXXX 405
D + K+K++V + K Y DW++ +IE LNK LT+K +YLVNLS KDYI
Sbjct: 184 DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKW 243
Query: 406 XXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
EWVD DPGA +IPFSG E +L ++ +ERQ+YL+ S L KII G+ +L
Sbjct: 244 LIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL 303
Query: 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACR 525
QL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFIMAEVM ++ FKE GSE A +
Sbjct: 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYE-FKEEGSENAVK 362
Query: 526 AAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 363 AAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 395
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9NTK5 | OLA1_HUMAN | 3, ., 6, ., 3, ., - | 0.6067 | 0.4830 | 0.6843 | yes | N/A |
| Q5ZM25 | OLA1_CHICK | 3, ., 6, ., 3, ., - | 0.6271 | 0.4830 | 0.6843 | yes | N/A |
| A0JPJ7 | OLA1_RAT | 3, ., 6, ., 3, ., - | 0.6153 | 0.4705 | 0.6666 | yes | N/A |
| Q7ZU42 | OLA1_DANRE | 3, ., 6, ., 3, ., - | 0.6216 | 0.4812 | 0.6818 | yes | N/A |
| Q8SWU7 | Y1354_DROME | No assigned EC number | 0.6677 | 0.4848 | 0.6851 | yes | N/A |
| Q5R821 | OLA1_PONAB | 3, ., 6, ., 3, ., - | 0.6033 | 0.4830 | 0.6843 | yes | N/A |
| Q9CZ30 | OLA1_MOUSE | 3, ., 6, ., 3, ., - | 0.6 | 0.4830 | 0.6843 | yes | N/A |
| Q66JG0 | OLA1_XENTR | 3, ., 6, ., 3, ., - | 0.6306 | 0.4688 | 0.6641 | yes | N/A |
| P91917 | TG210_CAEEL | No assigned EC number | 0.6101 | 0.4830 | 0.6860 | yes | N/A |
| Q2HJ33 | OLA1_BOVIN | 3, ., 6, ., 3, ., - | 0.6067 | 0.4830 | 0.6843 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 561 | |||
| PTZ00258 | 390 | PTZ00258, PTZ00258, GTP-binding protein; Provision | 1e-124 | |
| PRK09601 | 364 | PRK09601, PRK09601, GTP-binding protein YchF; Revi | 4e-95 | |
| COG0012 | 372 | COG0012, COG0012, Predicted GTPase, probable trans | 1e-83 | |
| cd01900 | 274 | cd01900, YchF, YchF GTPase | 8e-61 | |
| TIGR00092 | 368 | TIGR00092, TIGR00092, GTP-binding protein YchF | 4e-56 | |
| cd04867 | 83 | cd04867, TGS_YchF_C, TGS_YchF_C: This subfamily re | 9e-54 | |
| PTZ00258 | 390 | PTZ00258, PTZ00258, GTP-binding protein; Provision | 7e-52 | |
| pfam06071 | 84 | pfam06071, YchF-GTPase_C, Protein of unknown funct | 3e-49 | |
| cd01900 | 274 | cd01900, YchF, YchF GTPase | 4e-45 | |
| COG0012 | 372 | COG0012, COG0012, Predicted GTPase, probable trans | 4e-37 | |
| PRK09601 | 364 | PRK09601, PRK09601, GTP-binding protein YchF; Revi | 5e-37 | |
| cd01899 | 318 | cd01899, Ygr210, Ygr210 GTPase | 1e-20 | |
| PRK09602 | 396 | PRK09602, PRK09602, translation-associated GTPase; | 2e-20 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 8e-19 | |
| cd01881 | 167 | cd01881, Obg_like, Obg-like family of GTPases cons | 4e-18 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 8e-16 | |
| COG0536 | 369 | COG0536, Obg, Predicted GTPase [General function p | 1e-15 | |
| TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 1e-15 | |
| PRK12299 | 335 | PRK12299, obgE, GTPase CgtA; Reviewed | 3e-15 | |
| PRK12297 | 424 | PRK12297, obgE, GTPase CgtA; Reviewed | 4e-15 | |
| PTZ00258 | 390 | PTZ00258, PTZ00258, GTP-binding protein; Provision | 8e-15 | |
| TIGR00092 | 368 | TIGR00092, TIGR00092, GTP-binding protein YchF | 9e-15 | |
| PRK12298 | 390 | PRK12298, obgE, GTPase CgtA; Reviewed | 2e-12 | |
| cd01896 | 233 | cd01896, DRG, Developmentally Regulated GTP-bindin | 6e-12 | |
| PRK12296 | 500 | PRK12296, obgE, GTPase CgtA; Reviewed | 4e-11 | |
| COG1163 | 365 | COG1163, DRG, Predicted GTPase [General function p | 2e-10 | |
| PRK09601 | 364 | PRK09601, PRK09601, GTP-binding protein YchF; Revi | 4e-07 | |
| cd01900 | 274 | cd01900, YchF, YchF GTPase | 7e-07 | |
| COG0012 | 372 | COG0012, COG0012, Predicted GTPase, probable trans | 1e-06 | |
| cd04938 | 76 | cd04938, TGS_Obg-like, TGS_Obg-like: The C-termina | 2e-06 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 6e-06 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 1e-05 | |
| TIGR03156 | 351 | TIGR03156, GTP_HflX, GTP-binding protein HflX | 1e-05 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 2e-05 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 2e-05 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 2e-05 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 2e-05 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 2e-05 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 3e-05 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 3e-05 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 4e-05 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 5e-05 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 5e-05 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 6e-05 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 7e-05 | |
| cd01616 | 60 | cd01616, TGS, The TGS domain, named after the ThrR | 8e-05 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 9e-05 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 1e-04 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-04 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 1e-04 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 2e-04 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 2e-04 | |
| TIGR00437 | 591 | TIGR00437, feoB, ferrous iron transporter FeoB | 2e-04 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 3e-04 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 3e-04 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 5e-04 | |
| PRK09602 | 396 | PRK09602, PRK09602, translation-associated GTPase; | 6e-04 | |
| cd01897 | 167 | cd01897, NOG, Nucleolar GTP-binding protein (NOG) | 7e-04 | |
| cd01899 | 318 | cd01899, Ygr210, Ygr210 GTPase | 9e-04 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 0.001 | |
| cd01881 | 167 | cd01881, Obg_like, Obg-like family of GTPases cons | 0.002 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 0.002 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 0.002 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 0.002 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 0.002 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 0.002 | |
| PRK09435 | 332 | PRK09435, PRK09435, membrane ATPase/protein kinase | 0.002 | |
| PRK09435 | 332 | PRK09435, PRK09435, membrane ATPase/protein kinase | 0.002 | |
| PRK12299 | 335 | PRK12299, obgE, GTPase CgtA; Reviewed | 0.003 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 0.003 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 0.003 | |
| cd04178 | 171 | cd04178, Nucleostemin_like, A circularly permuted | 0.003 | |
| COG0536 | 369 | COG0536, Obg, Predicted GTPase [General function p | 0.004 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 0.004 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 0.004 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 0.004 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 0.004 |
| >gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 370 bits (951), Expect = e-124
Identities = 158/287 (55%), Positives = 200/287 (69%), Gaps = 24/287 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
RAFED+D+THVEGE++PVRD+EII+ EL LKD+E +EK ++++ K R KK K E
Sbjct: 124 RAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKK--RKKKKKKKEEKV 181
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
E+ D L K+ ++ EG + R GDW++ +IE LN+ LLTAK
Sbjct: 182 EL-----------------DVLKKVLEWLEEG--KPVRDGDWTDKEIEILNEYQLLTAKP 222
Query: 387 QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE-RQRYL 445
IYLVN+S KD+I++KNKWL KIKEWV G IIP+S FE +L ++ +E R+ YL
Sbjct: 223 MIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGG-PIIPYSAEFEEELAELGSEEERKEYL 281
Query: 446 DEQKAT-SVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGF 504
+E S+LDKII GYK L L +FFTAG DEV+ WTIQKGTKAPQAAG IH+DFEKGF
Sbjct: 282 EEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGF 341
Query: 505 IMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
I AEVM ++DF E GSEAA +A GKYRQ+G+ Y V+DGDIIFFKFN
Sbjct: 342 ICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFNV 388
|
Length = 390 |
| >gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Score = 294 bits (755), Expect = 4e-95
Identities = 119/285 (41%), Positives = 174/285 (61%), Gaps = 27/285 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R FEDD++THVEG+V+P+RDIE IN EL L D+E +EK + ++EK + GDK+ K E
Sbjct: 105 RCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGDKEAKAEL-- 162
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+ L K+ + EG + AR + ++ + + L L LLTAK
Sbjct: 163 -------------------ELLEKLLEHLEEG--KPARTLELTDEEEKLLKSLQLLTAKP 201
Query: 387 QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446
+Y+ N+ D + N ++ K++E A GA ++ E ++ ++ D+E+ +L+
Sbjct: 202 VLYVANVDEDD-LADGNPYVKKVREI--AAKEGAEVVVICAKIEAEIAELDDEEKAEFLE 258
Query: 447 EQKAT-SVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
E S LD++I GY+ L L +FTAG EV+AWTI+KGT APQAAG IHTDFEKGFI
Sbjct: 259 ELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFI 318
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550
AEV+ +DD E+GSEA + AGK R +G+ Y V+DGD++ F+FN
Sbjct: 319 RAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFN 363
|
Length = 364 |
| >gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 1e-83
Identities = 124/292 (42%), Positives = 168/292 (57%), Gaps = 32/292 (10%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG---DKKLKPE 323
R F D D+ HVEG+V+PV DIEIIN EL L D+E +EK ++EK + G DK+LK E
Sbjct: 106 RCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKELKEE 165
Query: 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEG-DKRHARYGDWSNADIEHLNKLNLL 382
L K++ + EG R WS D+E L LNLL
Sbjct: 166 L---------------------SLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLL 204
Query: 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD-DER 441
TAK +Y+ N+S D N+++ ++KE A ++P S E +L ++ D +E+
Sbjct: 205 TAKPMLYVANVSEDDL-ANLNEYVKRLKELAAKE--NAEVVPVSAAIELELRELADAEEK 261
Query: 442 QRYLDE--QKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTD 499
+L E QK S L+++I GY L LQ +FTAG EV+AWTI+ G+KAP AAG IH D
Sbjct: 262 GEFLIELGQK-ESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVIHPD 320
Query: 500 FEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
FEKGFI AEV+ + D +G EAA + AGK R +G+ Y V+DGD+I FKFN
Sbjct: 321 FEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFNV 372
|
Length = 372 |
| >gnl|CDD|206687 cd01900, YchF, YchF GTPase | Back alignment and domain information |
|---|
Score = 201 bits (515), Expect = 8e-61
Identities = 81/200 (40%), Positives = 109/200 (54%), Gaps = 27/200 (13%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R FEDDD+THVEG V+PVRDIEIIN EL L D+E IEK + ++EK + GDK+ K E
Sbjct: 101 RCFEDDDITHVEGSVDPVRDIEIINTELILADLETIEKRLERLEKKAKSGDKEAKEEL-- 158
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+ L KIK + EG AR + ++ +I+ L L LLTAK
Sbjct: 159 -------------------ELLEKIKEHLEEGKP--ARTLELTDEEIKILKSLQLLTAKP 197
Query: 387 QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446
IY+ N+S D I+ NK L K A GA +IP S E +L ++ ++E +L+
Sbjct: 198 VIYVANVSEDDLIRGNNKVL---KVREIAAKEGAEVIPISAKLEAELAELDEEEAAEFLE 254
Query: 447 EQKAT-SVLDKIITQGYKSL 465
E S LDK+I GY+ L
Sbjct: 255 ELGLEESGLDKLIRAGYELL 274
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274 |
| >gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 4e-56
Identities = 98/287 (34%), Positives = 138/287 (48%), Gaps = 28/287 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R FEDD + HV +P D EII+EEL D +EK I + +K + G K + +
Sbjct: 106 RCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGGKDKKEELLLL 165
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
E I + G + + L K L K
Sbjct: 166 E----------------------IILPLLNGGQMARHV---DLSKEELILIKSLNLLTKK 200
Query: 387 QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQ-LVDMPDDERQRYL 445
I L+ ++DY++ N I EW+ A G + F E L ++ D+ERQ +L
Sbjct: 201 PIILIANVSEDYLRNLNNNYLLIVEWIAAYSKGDPKVVFVCALEESELSELDDEERQEFL 260
Query: 446 DE--QKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKG 503
+ ++ L+ II YK L L +FFT G++EV+AWT + G APQAAG IHTDFE G
Sbjct: 261 QKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFETG 320
Query: 504 FIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550
FI AEV+ +DDF S + G R +G+ Y V+DGD++FF FN
Sbjct: 321 FIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFN 367
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor [Unknown function, General]. Length = 368 |
| >gnl|CDD|133440 cd04867, TGS_YchF_C, TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 9e-54
Identities = 62/83 (74%), Positives = 70/83 (84%)
Query: 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRA 526
L FFTAG DEV+AWTI+KGTKAPQAAG IHTDFEKGFI AEVM ++D E GSEAA +
Sbjct: 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKE 60
Query: 527 AGKYRQQGRAYTVEDGDIIFFKF 549
AGKYRQ+G+ Y V+DGDIIFFKF
Sbjct: 61 AGKYRQEGKDYVVQDGDIIFFKF 83
|
The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 83 |
| >gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 7e-52
Identities = 72/124 (58%), Positives = 83/124 (66%), Gaps = 19/124 (15%)
Query: 76 MGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
M PKK E EKK+LLGR G NLK+GIVG+PNVGKST FN L K AENFPFCTIDPN
Sbjct: 1 MPPKKKMEEEKKVLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNT 60
Query: 136 -------------------NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176
+ VPA L++ DIAGLVKGA+EG+GLGNAFLSHI A D I+
Sbjct: 61 ARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIY 120
Query: 177 HLCK 180
H+ +
Sbjct: 121 HVVR 124
|
Length = 390 |
| >gnl|CDD|203386 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933) | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 3e-49
Identities = 55/84 (65%), Positives = 66/84 (78%)
Query: 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRA 526
L FFTAG EV+AWTI+KGT APQAAG IH+DFEKGFI AEV+ +DD E+GSEA +
Sbjct: 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDLIEYGSEAKAKE 60
Query: 527 AGKYRQQGRAYTVEDGDIIFFKFN 550
AGK R +G+ Y V+DGDII F+FN
Sbjct: 61 AGKLRLEGKDYIVQDGDIIHFRFN 84
|
This domain is found at the C terminus of the YchF GTP-binding protein and is possibly related to the ubiquitin-like and MoaD/ThiS superfamilies. Length = 84 |
| >gnl|CDD|206687 cd01900, YchF, YchF GTPase | Back alignment and domain information |
|---|
Score = 159 bits (406), Expect = 4e-45
Identities = 54/100 (54%), Positives = 64/100 (64%), Gaps = 19/100 (19%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-------------------NNKV 139
+GIVG+PNVGKST FN LTKS+A A N+PFCTI+PN V
Sbjct: 1 IGIVGLPNVGKSTLFNALTKSNAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIV 60
Query: 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLC 179
PA + VDIAGLVKGA++G+GLGN FLSHI DAI H+
Sbjct: 61 PATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVV 100
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274 |
| >gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 4e-37
Identities = 51/103 (49%), Positives = 62/103 (60%), Gaps = 20/103 (19%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE------------------- 135
+LK+GIVG+PNVGKST FN LTK+ A N+PFCTI+PN
Sbjct: 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKC 60
Query: 136 -NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
PA + VDIAGLVKGA++G+GLGN FL +I DAI H
Sbjct: 61 PPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIH 103
|
Length = 372 |
| >gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 5e-37
Identities = 53/100 (53%), Positives = 63/100 (63%), Gaps = 19/100 (19%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-------------------NN 137
LK GIVG+PNVGKST FN LTK+ A A N+PFCTI+PN
Sbjct: 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKK 62
Query: 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
VPA + VDIAGLVKGA++G+GLGN FL++I DAI H
Sbjct: 63 IVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVH 102
|
Length = 364 |
| >gnl|CDD|206686 cd01899, Ygr210, Ygr210 GTPase | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 26/106 (24%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN------------------ENNKVP 140
+G+VG PNVGKSTFFN T + N+PF TIDPN N +
Sbjct: 1 IGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYG 60
Query: 141 AFLN--------VVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
++ ++D+AGLV GA EG+GLGN FL + D + H+
Sbjct: 61 KCIDGKRYVPVELIDVAGLVPGAHEGKGLGNQFLDDLRDADVLIHV 106
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. Length = 318 |
| >gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 2e-20
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 30/109 (27%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN---------------------E 135
+ +G+VG PNVGKSTFFN T + N+PF TIDPN
Sbjct: 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPR 61
Query: 136 NNK-------VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
N K +P + ++D+AGLV GA EG+GLGN FL + DA+ H
Sbjct: 62 NGKCIDGTRFIP--VELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIH 108
|
Length = 396 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 8e-19
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNENN-KVPAFLNVVDIAGLVKGA 155
+V +VG PNVGKST N LT + A ++P T DP + + +VD GL++GA
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIEGA 60
Query: 156 AEGQGLG--NAFLSHISACDAIFHL 178
+EG+G+ N FL I D I +
Sbjct: 61 SEGKGVEGFNRFLEAIREADLILLV 85
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 4e-18
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 100 GIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE---NNKVPAFLNVVDIAGLVKGAA 156
G+VG+PNVGKST + LT + ++PF T++PN + ++D+ GL+ GA+
Sbjct: 1 GLVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPGLLDGAS 60
Query: 157 EGQGLGNAFLSHISACDAIFH 177
EG+GLG L+H+ D I H
Sbjct: 61 EGRGLGEQILAHLYRSDLILH 81
|
The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 8e-16
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN------ENNKVPAFLNVVDIAGLV 152
VG+VG+PN GKST + ++ + ++PF T+ PN ++ + + DI GL+
Sbjct: 3 VGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRS---FVIADIPGLI 59
Query: 153 KGAAEGQGLGNAFLSHISACDAIFHL 178
+GA+EG+GLG+ FL HI + H+
Sbjct: 60 EGASEGKGLGHRFLRHIERTRVLLHV 85
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-15
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 19/91 (20%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVV-----------D 147
VG+VG+PN GKST + ++ + ++PF T+ PN L VV D
Sbjct: 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPN--------LGVVRVDGGESFVVAD 213
Query: 148 IAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
I GL++GA+EG GLG FL HI + H+
Sbjct: 214 IPGLIEGASEGVGLGLRFLRHIERTRVLLHV 244
|
Length = 369 |
| >gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 1e-15
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 27/111 (24%)
Query: 83 EGEKKMLLGRVGTNLK----VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK 138
GE++ L LK VG+VG+PN GKST + ++ + ++PF T+ PN
Sbjct: 144 PGEERWLR----LELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPN---- 195
Query: 139 VPAFLNVV-----------DIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
L VV DI GL++GA+EG GLG+ FL HI + HL
Sbjct: 196 ----LGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHL 242
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329 |
| >gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 76.6 bits (190), Expect = 3e-15
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 35/115 (30%)
Query: 83 EGEKKMLLGRVGTNLK----VGIVGVPNVGKSTFFNVLTKSSAAAE----NFPFCTIDPN 134
GE++ L LK VG+VG+PN GKST + ++ AA+ ++PF T+ PN
Sbjct: 145 PGEERWLRLE----LKLLADVGLVGLPNAGKSTLISAVS----AAKPKIADYPFTTLHPN 196
Query: 135 ENNKVPAFLNVV-----------DIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
L VV DI GL++GA+EG GLG+ FL HI + HL
Sbjct: 197 --------LGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHL 243
|
Length = 335 |
| >gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 4e-15
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 19/91 (20%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVV-----------D 147
VG+VG PNVGKST +V++ + N+ F T+ PN L VV D
Sbjct: 161 VGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPN--------LGVVETDDGRSFVMAD 212
Query: 148 IAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
I GL++GA+EG GLG+ FL HI I H+
Sbjct: 213 IPGLIEGASEGVGLGHQFLRHIERTRVIVHV 243
|
Length = 424 |
| >gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 8e-15
Identities = 31/43 (72%), Positives = 34/43 (79%)
Query: 224 MGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266
M PKK E EKK+LLGR G NLK+GIVG+PNVGKST FN L K
Sbjct: 1 MPPKKKMEEEKKVLLGRPGNNLKMGIVGLPNVGKSTTFNALCK 43
|
Length = 390 |
| >gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 9e-15
Identities = 45/101 (44%), Positives = 53/101 (52%), Gaps = 20/101 (19%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPN------------------ENN 137
L GIVG+PNVGKST F T A N PF TI+PN +
Sbjct: 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPE 62
Query: 138 KVPAFLNV-VDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
KVP VDIAGLV GA++G+GLGN FL++I D I H
Sbjct: 63 KVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQH 103
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor [Unknown function, General]. Length = 368 |
| >gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 30/119 (25%)
Query: 78 PKKTD---EGEKKMLLGRVGTNLK----VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCT 130
P++ GE++ L LK VG++G+PN GKSTF ++ + ++PF T
Sbjct: 138 PRQKTPGTPGEERELKLE----LKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTT 193
Query: 131 IDPNENNKVPAFLNVV-----------DIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
+ PN L VV DI GL++GA+EG GLG FL H+ C + HL
Sbjct: 194 LVPN--------LGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHL 244
|
Length = 390 |
| >gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG) | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 6e-12
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLN-------VVDIAGL 151
V +VG P+VGKST + LT + + + F T+ VP + ++D+ G+
Sbjct: 3 VALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTC-----VPGVMEYKGAKIQLLDLPGI 57
Query: 152 VKGAAEGQGLGNAFLSHISACDAIF 176
++GA++G+G G ++ D I
Sbjct: 58 IEGASDGKGRGRQVIAVARTADLIL 82
|
The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233 |
| >gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 26/94 (27%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAA----AENFPFCTIDPNENNKVPAFLNVV-------- 146
VG+VG P+ GKS+ + L SAA A+ +PF T+ PN L VV
Sbjct: 162 VGLVGFPSAGKSSLISAL---SAAKPKIAD-YPFTTLVPN--------LGVVQAGDTRFT 209
Query: 147 --DIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
D+ GL+ GA+EG+GLG FL HI C + H+
Sbjct: 210 VADVPGLIPGASEGKGLGLDFLRHIERCAVLVHV 243
|
Length = 500 |
| >gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLN-------VVDIAGL 151
V +VG P+VGKST N LT + + ++PF T++P VP L ++D+ G+
Sbjct: 66 VALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP-----VPGMLEYKGAQIQLLDLPGI 120
Query: 152 VKGAAEGQGLGNAFLSHISACDAIF 176
++GA+ G+G G LS D I
Sbjct: 121 IEGASSGRGRGRQVLSVARNADLII 145
|
Length = 365 |
| >gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-07
Identities = 18/22 (81%), Positives = 19/22 (86%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
LK GIVG+PNVGKST FN LTK
Sbjct: 3 LKCGIVGLPNVGKSTLFNALTK 24
|
Length = 364 |
| >gnl|CDD|206687 cd01900, YchF, YchF GTPase | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 7e-07
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 247 VGIVGVPNVGKSTFFNVLTK 266
+GIVG+PNVGKST FN LTK
Sbjct: 1 IGIVGLPNVGKSTLFNALTK 20
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274 |
| >gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTK 266
+LK+GIVG+PNVGKST FN LTK
Sbjct: 1 MSLKIGIVGLPNVGKSTLFNALTK 24
|
Length = 372 |
| >gnl|CDD|133441 cd04938, TGS_Obg-like, TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 463 KSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEA 522
K++ + G ++KGT A +IH D EKGFI A
Sbjct: 8 KNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVG------------- 54
Query: 523 ACRAAGKYRQQGRAYTVEDGDIIFFKF 549
G+ R +G+ + DI+ FK
Sbjct: 55 -----GRRRLEGKDVILGKNDILKFKT 76
|
The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 76 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 6e-06
Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 59/147 (40%)
Query: 247 VGIVGVPNVGKSTFFNVLTK--------------------RAFEDDDVT----------- 275
VG+VG+PN GKST + ++ R +
Sbjct: 3 VGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGA 62
Query: 276 ------------HVE------------GEVNPVRDIEIINEELRLKDVEHIEKE----IN 307
H+E GE +PV D E I EL + EK +N
Sbjct: 63 SEGKGLGHRFLRHIERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPGLAEKPRIVVLN 122
Query: 308 KIEKLVQRGDKKLKPEYVSEVWFSFIY 334
KI+ L + E + E+ ++
Sbjct: 123 KIDLLDAEERFEKLKELLKELKGKKVF 149
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKR 267
+V +VG PNVGKST N LT
Sbjct: 1 RVALVGRPNVGKSTLINALTGA 22
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP 133
V +VG N GKST FN LT + A + F T+DP
Sbjct: 191 TVALVGYTNAGKSTLFNALTGADVYAADQLFATLDP 226
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 38/141 (26%)
Query: 190 SLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249
L I L+ L + +L + K EG LKV I
Sbjct: 184 ELVLEKIREKLEELIAELDELLATAKQG---------KILREG------------LKVVI 222
Query: 250 VGVPNVGKSTFFNVLTK--RAFEDDDVTHVEG------EVNPVRDIEIINEELRLKDVEH 301
+G PNVGKS+ N L RA VT + G E DI + +RL D
Sbjct: 223 IGRPNVGKSSLLNALLGRDRAI----VTDIAGTTRDVIEE----DINLNGIPVRLVDTAG 274
Query: 302 IEKEINKIEKL-VQRGDKKLK 321
I + + +E++ ++R K ++
Sbjct: 275 IRETDDVVERIGIERAKKAIE 295
|
Length = 454 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP 133
V +VG N GKST FN LT + AE+ F T+DP
Sbjct: 44 VALVGYTNAGKSTLFNALTGADVLAEDQLFATLDP 78
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 74 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA 122
KK+ +K ++ + K G + ++ IVG+PNVGKST N L A
Sbjct: 99 KKLLKEKNEKLKAK---GLLNRPIRAMIVGIPNVGKSTLINRLAGKKVA 144
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 222 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
KK+ +K ++ + K G + ++ IVG+PNVGKST N L +
Sbjct: 99 KKLLKEKNEKLKAK---GLLNRPIRAMIVGIPNVGKSTLINRLAGK 141
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
L V +VG PNVGK+T FN LT ++ N+P T++
Sbjct: 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVE 39
|
Length = 653 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 3e-05
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 222 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
KK+ +K + + K + R ++ I+G+PNVGKST N L +
Sbjct: 102 KKLLKEKNERRKAKGMRPR---AIRAMIIGIPNVGKSTLINRLAGK 144
|
Length = 287 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 3e-05
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 74 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA 122
KK+ +K + + K + R ++ I+G+PNVGKST N L A
Sbjct: 102 KKLLKEKNERRKAKGMRPR---AIRAMIIGIPNVGKSTLINRLAGKKIA 147
|
Length = 287 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNE------NNKVPAFLNVVD 147
+ V IVG PNVGKST FN LT A + P T D + ++D
Sbjct: 2 STPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREF----ILID 57
Query: 148 IAGLVKGAAEG 158
GL G +
Sbjct: 58 TGGLDDGDEDE 68
|
Length = 444 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 5e-05
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAA-AENFP 127
V IVG PNVGKST FN LT A + P
Sbjct: 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTP 31
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-05
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 101 IVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNENNKVPAFLN-----VVDIAGLVKG 154
IVG PNVGKST FN LT A + P T D A ++D G+
Sbjct: 2 IVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGE---AEWGGREFILIDTGGIEPD 58
Query: 155 AAEGQGL--GNAFLSHISACDAIF 176
A ++ I D I
Sbjct: 59 DEGISKEIREQAEIA-IEEADVIL 81
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 52 PKAPKRRKQHLSDKLRP--KADSKKKMGPKKTDEGEKKMLL--------GRVGTNLKVGI 101
P K+ ++ + P ++K G KK + KK+L G + L+ +
Sbjct: 61 PAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLLPRPLRAMV 120
Query: 102 VGVPNVGKSTFFNVLTKSSAAA 123
VG+PNVGKST N L A
Sbjct: 121 VGIPNVGKSTLINRLRGKKVAK 142
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
+ + +VG PNVGK+T FN LT + N+P T++
Sbjct: 1 ITIALVGNPNVGKTTLFNALTGARQHVGNWPGVTVE 36
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
| >gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 22/80 (27%)
Query: 468 QYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAA 527
FT A + KG A A +IHTD KGFI A V
Sbjct: 1 MIIFTPDG---SAVELPKGATAMDFALKIHTDLGKGFIGALVNG---------------- 41
Query: 528 GKYRQQGRAYTVEDGDIIFF 547
+ +YT++DGD +
Sbjct: 42 ---QLVDLSYTLQDGDTVSI 58
|
TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 60 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 9e-05
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 219 DSKKKMGPKKTDEGEKKMLL--------GRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
++K G KK + KK+L G + L+ +VG+PNVGKST N L +
Sbjct: 82 NAKNGKGVKKLLKKAKKLLKENEKLKAKGLLPRPLRAMVVGIPNVGKSTLINRLRGK 138
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN LT +
Sbjct: 1 VVAIVGRPNVGKSTLFNRLTGK 22
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 100 GIVGVPNVGKSTFFNVLTKS-SAAAENFPFCTIDPNE-----NNKVPAFLNVVDIAGLVK 153
I G PNVGKS+ N L P T DP P + ++D GL +
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGP--VVLIDTPGLDE 58
Query: 154 GAAEGQGLGNAFLSHISACDAIFHLC 179
G+ D + +
Sbjct: 59 EGGLGRERVEEARQVADRADLVLLVV 84
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-04
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
+VG PNVGK+T FN LT + N+P T++
Sbjct: 2 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVE 33
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-04
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAA 122
V IVG PNVGKST FN LT A
Sbjct: 3 VVAIVGRPNVGKSTLFNRLTGKRDA 27
|
Length = 435 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 2e-04
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN LT +
Sbjct: 3 VVAIVGRPNVGKSTLFNRLTGK 24
|
Length = 435 |
| >gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 103 GVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G PNVGKST FN LT ++ N+P T++
Sbjct: 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVE 30
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 15/19 (78%), Positives = 15/19 (78%)
Query: 249 IVGVPNVGKSTFFNVLTKR 267
IVG PNVGKST FN LT R
Sbjct: 2 IVGRPNVGKSTLFNRLTGR 20
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP 133
V +VG N GKST FN LT + + F T+DP
Sbjct: 195 VALVGYTNAGKSTLFNALTGADVYVADQLFATLDP 229
|
Length = 411 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267
+ V IVG PNVGKST FN LT R
Sbjct: 2 STPVVAIVGRPNVGKSTLFNRLTGR 26
|
Length = 444 |
| >gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
+ +G+VG PNVGKSTFFN T
Sbjct: 2 ITIGLVGKPNVGKSTFFNAAT 22
|
Length = 396 |
| >gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG) | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCT 130
I G PNVGKS+ N LT++ +PF T
Sbjct: 5 IAGYPNVGKSSLVNKLTRAKPEVAPYPFTT 34
|
NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167 |
| >gnl|CDD|206686 cd01899, Ygr210, Ygr210 GTPase | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 247 VGIVGVPNVGKSTFFNVLT 265
+G+VG PNVGKSTFFN T
Sbjct: 1 IGLVGKPNVGKSTFFNAAT 19
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. Length = 318 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPN----ENNKVPAFLNVVDIAGLV 152
K+ IVG PNVGKST N L + + E P T + E + N++D AG
Sbjct: 3 KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62
Query: 153 KGAAEGQGLGNAFLSHISACDAIFHL 178
A + A S + D + +
Sbjct: 63 DYDAIRRLYYRAVESSLRVFDIVILV 88
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 248 GIVGVPNVGKSTFFNVLTK 266
G+VG+PNVGKST + LT
Sbjct: 1 GLVGLPNVGKSTLLSALTS 19
|
The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
L V +VG PNVGK+T FN LT
Sbjct: 4 LTVALVGNPNVGKTTLFNALTG 25
|
Length = 653 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
+ + +VG PNVGK+T FN LT
Sbjct: 1 ITIALVGNPNVGKTTLFNALT 21
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 17/80 (21%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDD---VTHVEGEVNPVRDI--EIINEE---LRL 296
+KV I G PNVGKS+ N L R D V+ + G RD+ E I+ +RL
Sbjct: 4 IKVVIAGKPNVGKSSLLNALAGR-----DRAIVSDIAGT---TRDVIEEEIDLGGIPVRL 55
Query: 297 KDVEHIEKEINKIEKL-VQR 315
D + + ++IEK+ ++R
Sbjct: 56 IDTAGLRETEDEIEKIGIER 75
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA 122
+KV I G PNVGKS+ N L A
Sbjct: 4 IKVVIAGKPNVGKSSLLNALAGRDRA 29
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 100 GIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAF----LNVVDIAGLVKG 154
+VG VGKS+ N L + P T DP+ K L +VD GL +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 155 AAEGQGLGNAFLSHISACDAIFHLC 179
G G + D I +
Sbjct: 61 --GGLGREELARLLLRGADLILLVV 83
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|236515 PRK09435, PRK09435, membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVL 116
LL G L++GI GVP VGKSTF L
Sbjct: 49 LLPHTGNALRIGITGVPGVGKSTFIEAL 76
|
Length = 332 |
| >gnl|CDD|236515 PRK09435, PRK09435, membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVL 264
LL G L++GI GVP VGKSTF L
Sbjct: 49 LLPHTGNALRIGITGVPGVGKSTFIEAL 76
|
Length = 332 |
| >gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 231 EGEKKMLLGRVGTNLK----VGIVGVPNVGKSTFFNVLT 265
GE++ L LK VG+VG+PN GKST + ++
Sbjct: 145 PGEERWLRLE----LKLLADVGLVGLPNAGKSTLISAVS 179
|
Length = 335 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 249 IVGVPNVGKSTFFNVLT 265
+VG PNVGK+T FN LT
Sbjct: 2 LVGNPNVGKTTLFNALT 18
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA 122
++VG+VG PNVGKST N L A
Sbjct: 133 IRVGVVGYPNVGKSTLINRLLGKKVA 158
|
Length = 322 |
| >gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAAA 123
+ T++ VG+VG PNVGKS+ N L +S A
Sbjct: 113 IKTSITVGVVGYPNVGKSSVINSLKRSRACN 143
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171 |
| >gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 247 VGIVGVPNVGKSTFFNVLT 265
VG+VG+PN GKST + ++
Sbjct: 162 VGLVGLPNAGKSTLLSAVS 180
|
Length = 369 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKR 267
++VG+VG PNVGKST N L +
Sbjct: 133 IRVGVVGYPNVGKSTLINRLLGK 155
|
Length = 322 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAA 122
VG+VG P VGKS+ N L +A
Sbjct: 101 IVGVVGYPKVGKSSIINALKGRHSA 125
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.004
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA 122
LKV I G PNVGKS+ N L A
Sbjct: 216 LKVVIAGRPNVGKSSLLNALLGEERA 241
|
Length = 449 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 73 KKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA 122
+ K E K+ L + ++VG+VG+PNVGKS+F N L
Sbjct: 68 NGQGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKL 117
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 100.0 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 100.0 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 100.0 | |
| KOG1491|consensus | 391 | 100.0 | ||
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 100.0 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 100.0 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 100.0 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 100.0 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 100.0 | |
| PF06071 | 84 | YchF-GTPase_C: Protein of unknown function (DUF933 | 100.0 | |
| cd04867 | 83 | TGS_YchF_C TGS_YchF_C: This subfamily represents T | 100.0 | |
| KOG1486|consensus | 364 | 99.96 | ||
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.95 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.95 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.94 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.94 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.93 | |
| KOG1487|consensus | 358 | 99.91 | ||
| KOG2484|consensus | 435 | 99.9 | ||
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.88 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.85 | |
| KOG1489|consensus | 366 | 99.83 | ||
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.82 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.82 | |
| KOG2423|consensus | 572 | 99.81 | ||
| KOG1424|consensus | 562 | 99.8 | ||
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.79 | |
| KOG2485|consensus | 335 | 99.79 | ||
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.79 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.78 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.78 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.77 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.77 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.77 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.77 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.76 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.75 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.74 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.73 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.72 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.71 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.71 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.69 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.69 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.69 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.68 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.66 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.66 | |
| cd04938 | 76 | TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma | 99.65 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.65 | |
| KOG0410|consensus | 410 | 99.64 | ||
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.63 | |
| KOG1423|consensus | 379 | 99.6 | ||
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.6 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.6 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.59 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.59 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.57 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.57 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.56 | |
| KOG1191|consensus | 531 | 99.56 | ||
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.56 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.55 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.54 | |
| KOG1191|consensus | 531 | 99.54 | ||
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.53 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.53 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.52 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.52 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.5 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.5 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 99.47 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.46 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.46 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.46 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.45 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.45 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.45 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.44 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.44 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.44 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.43 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.43 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.43 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.43 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.43 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.42 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.42 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.42 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.42 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.42 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.41 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.41 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.41 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.41 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.4 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.4 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.4 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.4 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.39 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.39 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.39 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.38 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.38 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.38 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.38 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.38 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.37 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.36 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.36 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.36 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.36 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.36 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.36 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.36 | |
| cd01666 | 75 | TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate | 99.36 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.35 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.35 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.35 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.35 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.35 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.35 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.35 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.35 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.34 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.34 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.34 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.34 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.34 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.34 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.33 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.33 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.33 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.33 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.33 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.33 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.33 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.32 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.32 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.32 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.32 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.31 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.31 | |
| KOG1490|consensus | 620 | 99.31 | ||
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.31 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.31 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.3 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.3 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.3 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.3 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.3 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.3 | |
| cd01669 | 76 | TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma | 99.29 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.29 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.29 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.29 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.29 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.29 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.29 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.28 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.28 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.28 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.27 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.27 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.27 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.27 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.27 | |
| KOG0092|consensus | 200 | 99.27 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.26 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.26 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.26 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.25 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.25 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.25 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.24 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.24 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.24 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.24 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.24 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.24 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.23 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.23 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.23 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.23 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.23 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.22 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.22 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.22 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.22 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.21 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.2 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.2 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.2 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.2 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.2 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.19 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.19 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.18 | |
| KOG1489|consensus | 366 | 99.18 | ||
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.18 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.17 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.17 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.17 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.16 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.16 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.15 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.15 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.15 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.15 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.15 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.14 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.14 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.14 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.14 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.13 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.13 | |
| KOG0092|consensus | 200 | 99.13 | ||
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.13 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.12 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.12 | |
| KOG0073|consensus | 185 | 99.12 | ||
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.12 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.12 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.12 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.12 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.11 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.11 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.11 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.11 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.1 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.1 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.1 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.1 | |
| KOG0084|consensus | 205 | 99.09 | ||
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.09 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.09 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.09 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.09 | |
| KOG0078|consensus | 207 | 99.08 | ||
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.08 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.08 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.08 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.08 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.07 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.07 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.07 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.06 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.06 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.06 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.05 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.05 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.05 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.05 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.05 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.05 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.04 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.04 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.04 | |
| KOG0094|consensus | 221 | 99.03 | ||
| CHL00071 | 409 | tufA elongation factor Tu | 99.03 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.03 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.03 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.02 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.02 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.02 | |
| KOG0394|consensus | 210 | 99.01 | ||
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.01 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.01 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.01 | |
| KOG0070|consensus | 181 | 99.01 | ||
| KOG0098|consensus | 216 | 99.01 | ||
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.0 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.0 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.0 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 98.99 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 98.99 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 98.99 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 98.99 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 98.99 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 98.98 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 98.98 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 98.98 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 98.98 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 98.97 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 98.97 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 98.97 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.96 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 98.96 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 98.96 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 98.96 | |
| KOG0075|consensus | 186 | 98.96 | ||
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 98.95 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 98.95 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 98.95 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 98.95 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 98.94 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 98.94 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 98.94 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 98.94 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 98.93 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 98.93 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 98.93 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 98.93 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 98.93 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 98.93 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.92 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 98.92 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 98.92 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 98.92 | |
| KOG0094|consensus | 221 | 98.91 | ||
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 98.91 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.91 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 98.91 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 98.91 | |
| KOG0394|consensus | 210 | 98.91 | ||
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 98.91 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 98.91 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 98.91 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 98.9 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 98.9 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.9 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 98.9 | |
| KOG0084|consensus | 205 | 98.89 | ||
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 98.89 | |
| KOG0087|consensus | 222 | 98.89 | ||
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 98.88 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 98.88 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 98.88 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 98.88 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 98.88 | |
| PLN03108 | 210 | Rab family protein; Provisional | 98.88 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 98.87 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 98.87 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 98.87 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 98.87 | |
| PLN03118 | 211 | Rab family protein; Provisional | 98.87 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 98.87 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 98.86 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 98.86 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 98.86 | |
| KOG0079|consensus | 198 | 98.86 | ||
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 98.85 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 98.85 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 98.85 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 98.85 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 98.85 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 98.84 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 98.84 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 98.84 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 98.84 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 98.84 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 98.83 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 98.83 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 98.83 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 98.82 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 98.82 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 98.82 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 98.82 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 98.82 | |
| KOG0080|consensus | 209 | 98.81 | ||
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.81 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 98.81 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 98.81 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 98.81 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 98.81 | |
| KOG0078|consensus | 207 | 98.8 | ||
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 98.8 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.8 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 98.79 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 98.79 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 98.78 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 98.78 | |
| KOG0088|consensus | 218 | 98.78 | ||
| KOG1490|consensus | 620 | 98.78 | ||
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 98.78 | |
| KOG0080|consensus | 209 | 98.77 | ||
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 98.77 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 98.77 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 98.76 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 98.76 | |
| KOG0091|consensus | 213 | 98.76 | ||
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 98.76 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 98.75 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 98.75 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 98.75 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 98.74 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 98.73 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 98.72 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.72 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 98.72 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 98.72 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 98.71 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 98.71 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 98.71 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.71 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 98.7 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 98.7 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.7 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 98.7 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 98.7 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 98.7 | |
| KOG0098|consensus | 216 | 98.7 | ||
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 98.69 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 98.69 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 98.69 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 98.68 | |
| KOG0086|consensus | 214 | 98.68 | ||
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 98.68 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 98.68 | |
| KOG0071|consensus | 180 | 98.68 | ||
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 98.67 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 98.65 | |
| KOG0087|consensus | 222 | 98.65 | ||
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 98.65 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 98.64 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 98.64 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.64 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 98.64 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 98.63 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.63 | |
| KOG0088|consensus | 218 | 98.63 | ||
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 98.63 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 98.62 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 98.62 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 98.62 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.62 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 98.62 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 98.61 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 98.61 | |
| KOG0097|consensus | 215 | 98.61 | ||
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 98.6 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.6 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 98.59 | |
| KOG0073|consensus | 185 | 98.58 | ||
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 98.58 | |
| KOG0074|consensus | 185 | 98.57 | ||
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 98.57 | |
| KOG0410|consensus | 410 | 98.56 | ||
| PRK12739 | 691 | elongation factor G; Reviewed | 98.56 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.56 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 98.55 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.55 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.55 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 98.54 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 98.53 | |
| KOG0095|consensus | 213 | 98.52 | ||
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 98.51 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.51 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.5 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 98.49 | |
| KOG0093|consensus | 193 | 98.49 | ||
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.47 | |
| KOG0081|consensus | 219 | 98.46 | ||
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 98.46 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 98.46 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 98.45 | |
| KOG0095|consensus | 213 | 98.45 | ||
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 98.44 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 98.43 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.42 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 98.42 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 98.4 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 98.4 | |
| PRK13768 | 253 | GTPase; Provisional | 98.39 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.39 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.38 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 98.38 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.38 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 98.37 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 98.37 | |
| KOG0079|consensus | 198 | 98.37 | ||
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.37 | |
| KOG1423|consensus | 379 | 98.36 | ||
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 98.36 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.36 | |
| KOG1532|consensus | 366 | 98.36 | ||
| KOG0083|consensus | 192 | 98.36 | ||
| KOG4252|consensus | 246 | 98.34 | ||
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 98.33 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.33 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 98.31 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 98.31 | |
| KOG0072|consensus | 182 | 98.3 | ||
| KOG1491|consensus | 391 | 98.3 | ||
| KOG0076|consensus | 197 | 98.3 | ||
| KOG0091|consensus | 213 | 98.29 | ||
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 98.27 | |
| KOG0462|consensus | 650 | 98.26 | ||
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 98.26 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 98.25 | |
| KOG0395|consensus | 196 | 98.24 | ||
| COG3596 | 296 | Predicted GTPase [General function prediction only | 98.23 | |
| PF02824 | 60 | TGS: TGS domain; InterPro: IPR004095 The TGS domai | 98.23 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 98.23 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 98.22 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 98.21 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 98.21 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.2 | |
| KOG2486|consensus | 320 | 98.2 | ||
| KOG1145|consensus | 683 | 98.19 |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-71 Score=566.98 Aligned_cols=343 Identities=49% Similarity=0.825 Sum_probs=307.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-------------------cCCeEEEEeCCCcccCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-------------------VPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-------------------~~~~i~l~DtpG~~~~~~ 156 (561)
+++||+||+||||||||||+|++..+.++++||+|++++.+.. .+.++.++||||++.+.+
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 3789999999999999999999999999999999999987621 224699999999998888
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
.+.+++++|+.++++||+++||||+
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~------------------------------------------------------- 106 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRC------------------------------------------------------- 106 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeC-------------------------------------------------------
Confidence 8888999999999999999999964
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
|.+..++++.|+.||.++++.+..||.+||..-++++++++.+.....
T Consensus 107 --------------------------------f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~ 154 (364)
T PRK09601 107 --------------------------------FEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGG 154 (364)
T ss_pred --------------------------------CccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Confidence 255667777789999999999999999999999999999999775433
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
.+....++ +++.+|.+++++ ..+.+...|+++|...|+.+.+++.||+|+|+|+.|.
T Consensus 155 ~~~~~~e~---------------------~~l~~v~~~Le~--~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~ 211 (364)
T PRK09601 155 DKEAKAEL---------------------ELLEKLLEHLEE--GKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDED 211 (364)
T ss_pred chhHHHHH---------------------HHHHHHHHHHHc--CCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCcc
Confidence 22222333 788899999987 7777777899999999999999999999999999976
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHcccCceeccccCC
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSLQLQYFFTAGQ 475 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~~t~~~ 475 (561)
|... .+..++++.+++... +.+++++||+.+..|.+|.++.+++|++++| .+++++++++.+|++|+||+|||+|+
T Consensus 212 ~~~~-~~~~~~~i~~~~~~~--~~~~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~ 288 (364)
T PRK09601 212 DLAD-GNPYVKKVREIAAKE--GAEVVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGP 288 (364)
T ss_pred cccc-ccHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCC
Confidence 6542 566788888887664 6789999999999999998888899999999 77899999999999999999999999
Q ss_pred CceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEecC
Q psy17315 476 DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551 (561)
Q Consensus 476 ~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~~ 551 (561)
+|+|||++++|+||+++||.|||||+||||||+|++|+||+++||+++||++|+.|.+||||+|||||||+||||+
T Consensus 289 ~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn~ 364 (364)
T PRK09601 289 KEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFNV 364 (364)
T ss_pred CeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-70 Score=564.51 Aligned_cols=353 Identities=61% Similarity=1.018 Sum_probs=309.8
Q ss_pred hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-------------------cCCeEEEEeCC
Q psy17315 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-------------------VPAFLNVVDIA 149 (561)
Q Consensus 89 ~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-------------------~~~~i~l~Dtp 149 (561)
...+...+++||+||+||||||||||+|++..+.++++||||++++.+.. .+.++.++|||
T Consensus 14 ~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 14 LLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred hhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 44555678999999999999999999999999999999999999988732 24569999999
Q ss_pred CcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCc
Q psy17315 150 GLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKT 229 (561)
Q Consensus 150 G~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~ 229 (561)
|++.+.+.+.+++++|++++++||+++||+|+
T Consensus 94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~------------------------------------------------ 125 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRA------------------------------------------------ 125 (390)
T ss_pred CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeC------------------------------------------------
Confidence 99988887788999999999999999999954
Q ss_pred cHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHH
Q psy17315 230 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 230 ~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l 309 (561)
|.+.+++++.|+.||.++++.+..+|.+||..-++++++++
T Consensus 126 ---------------------------------------f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~ 166 (390)
T PTZ00258 126 ---------------------------------------FEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDEL 166 (390)
T ss_pred ---------------------------------------CCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35667888889999999999999999999999999999998
Q ss_pred HHHHhh--CCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCce
Q psy17315 310 EKLVQR--GDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ 387 (561)
Q Consensus 310 ~~~~~~--~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ 387 (561)
.+.... ..+....+. .++..|.+++++ ..+.+...|+++|...+..+.+++.||+
T Consensus 167 ~k~~~~~~~~~~~~~~~---------------------~~l~~v~~~L~~--~~~~~~~~~~~~e~~~l~~l~llt~KP~ 223 (390)
T PTZ00258 167 TKKRKKKKKKKEEKVEL---------------------DVLKKVLEWLEE--GKPVRDGDWTDKEIEILNEYQLLTAKPM 223 (390)
T ss_pred HHHhccccchhhHHHHH---------------------HHHHHHHHHHHc--CCccccCCCCHHHHHHHHHhchhhcCCE
Confidence 876311 111111122 778888999988 7777778999999999999999999999
Q ss_pred EEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCC-CHHHHHHHHHHhc-ccchHHHHHHHHHccc
Q psy17315 388 IYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDM-PDDERQRYLDEQK-ATSVLDKIITQGYKSL 465 (561)
Q Consensus 388 iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L-~~~~~~~~~~~~~-~~~~l~~li~~~~~~l 465 (561)
|||+|+.+.|.....+..++.+.+++.... +.+++++||+.+..|.+| .++++.+|++++| .+++++++++.+|++|
T Consensus 224 iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~-~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL 302 (390)
T PTZ00258 224 IYLVNMSEKDFIRQKNKWLAKIKEWVGEKG-GGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLL 302 (390)
T ss_pred EEEEECchhhhcccchHHHHHHHHHHHhcC-CCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHh
Confidence 999999965542224557788888776531 367999999999999999 9899999999999 7789999999999999
Q ss_pred CceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEE
Q psy17315 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDII 545 (561)
Q Consensus 466 ~li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~ 545 (561)
+||+|||+||+|+|||++++|+||+++|+.|||||+||||||+||+|+||+++||+++||++|+.|++||||+|+|||||
T Consensus 303 ~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi 382 (390)
T PTZ00258 303 NLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDII 382 (390)
T ss_pred CCEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC
Q psy17315 546 FFKFNAG 552 (561)
Q Consensus 546 ~~~~~~~ 552 (561)
+||||++
T Consensus 383 ~f~fnv~ 389 (390)
T PTZ00258 383 FFKFNVS 389 (390)
T ss_pred EEEecCC
Confidence 9999996
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-68 Score=532.31 Aligned_cols=343 Identities=50% Similarity=0.828 Sum_probs=303.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--------------------cccCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--------------------NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--------------------~~~~~~i~l~DtpG~~~~~ 155 (561)
.+++||||+||||||||||+||...+.+++|||||.+|+.+ ...+..+.++|.+|+++++
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 57899999999999999999999999999999999999998 1134569999999999999
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
++|+|++++||++||++|+|+|||
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVV-------------------------------------------------------- 105 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVV-------------------------------------------------------- 105 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEE--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhh
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR 315 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~ 315 (561)
++|.+.++.+++|.+||++|+++++.||++||...++++|+++.+....
T Consensus 106 -------------------------------r~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~ 154 (372)
T COG0012 106 -------------------------------RCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKA 154 (372)
T ss_pred -------------------------------EecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557788899999999999999999999999999999999999988765
Q ss_pred CC---ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCccc---CCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 316 GD---KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR---YGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 316 ~~---~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~---~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
+. +....++ ..+..+...+.+ ..+.+ ...|++++...+..+.+++.||+||
T Consensus 155 ~~~~~k~~~~~l---------------------~~l~~~~~~l~~--~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~ly 211 (372)
T COG0012 155 GKKLDKELKEEL---------------------SLLGKLEEHLEE--GKPARGLDLSKWSEEDLEALASLNLLTAKPMLY 211 (372)
T ss_pred ccchHHHHHHHH---------------------HHHHhHHHHHHh--hhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEE
Confidence 43 2222222 555555555555 44433 3469999999999999999999999
Q ss_pred EecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH-HHHHHHHHHhc-ccchHHHHHHHHHcccCc
Q psy17315 390 LVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD-DERQRYLDEQK-ATSVLDKIITQGYKSLQL 467 (561)
Q Consensus 390 v~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~-~~~~~~~~~~~-~~~~l~~li~~~~~~l~l 467 (561)
|+||.|.+... .+.++++++++.... +.++||+||+.+..|.+|.+ ++..+|+...+ .++++++++++.|+.|||
T Consensus 212 vaN~~e~~~~~-~n~~~~~i~~~~~~~--~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl 288 (372)
T COG0012 212 VANVSEDDLAN-LNEYVKRLKELAAKE--NAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGL 288 (372)
T ss_pred EEECCcccccc-hhHHHHHHHHHhhhc--CCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccch
Confidence 99999776543 255688888887654 67899999999999999987 88888999988 568999999999999999
Q ss_pred eeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 468 QYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 468 i~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
++|||.|++|+|+|++++|++|+++||.||||+.+|||+|+|++|+||+.++|+..|+++|+.|.+||||+|||||||+|
T Consensus 289 ~~~ft~g~~evrawti~~g~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 289 QTYFTAGVKEVRAWTIKDGSKAPDAAGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred hHHHhhcCCeEEEEEeccCCcccccCCccccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q psy17315 548 KFNA 551 (561)
Q Consensus 548 ~~~~ 551 (561)
|||+
T Consensus 369 k~~~ 372 (372)
T COG0012 369 KFNV 372 (372)
T ss_pred EecC
Confidence 9985
|
|
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-67 Score=513.18 Aligned_cols=364 Identities=63% Similarity=0.989 Sum_probs=325.9
Q ss_pred hhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-------------------cccCCeEE
Q psy17315 84 GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-------------------NKVPAFLN 144 (561)
Q Consensus 84 ~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-------------------~~~~~~i~ 144 (561)
.++....+|.+..+++||||+|||||||+||+||+..+.++++||||.+|+.+ ...+..+.
T Consensus 8 ~~~~~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~ 87 (391)
T KOG1491|consen 8 EEKKVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLT 87 (391)
T ss_pred ccccccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEE
Confidence 34456788888899999999999999999999999998899999999999887 22456799
Q ss_pred EEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcC
Q psy17315 145 VVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKM 224 (561)
Q Consensus 145 l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~ 224 (561)
++|++|++++++.++|++++||+++|.+|.|+|||
T Consensus 88 v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVV--------------------------------------------- 122 (391)
T KOG1491|consen 88 VYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVV--------------------------------------------- 122 (391)
T ss_pred EEeecccccCcccCcCchHHHHHhhhhccceeEEE---------------------------------------------
Confidence 99999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 225 GPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 225 ~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
+.|.+..+.|+.|.+||++|++++..||++||..-+++
T Consensus 123 ------------------------------------------r~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k 160 (391)
T KOG1491|consen 123 ------------------------------------------RAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEK 160 (391)
T ss_pred ------------------------------------------EecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHH
Confidence 45577778899999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCc-ccCCCCCHHHHHHHHhhhhcc
Q psy17315 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRH-ARYGDWSNADIEHLNKLNLLT 383 (561)
Q Consensus 305 ~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~-~~~~~~~~~e~~~l~~~~~l~ 383 (561)
.++++.+...+..... +..+.. .+.+++..|..++.+. .++ .....|++++++++..+.+++
T Consensus 161 ~~e~~~k~~~~~~~~~--~~~q~k--------------~e~~~l~~v~~~ll~~-kk~~~~~~~W~d~eieiln~~~lLt 223 (391)
T KOG1491|consen 161 RLEKLEKKHKRTKSNL--ETKQLK--------------FEYGLLEKVKEKLLDG-KKPVRPKEKWNDEEIEILNKLFLLT 223 (391)
T ss_pred HHHHHhhhhhcccCcH--HHHHHH--------------HHHhHHHHHHHHHhcc-CCCCcchhhcCHHHHHHHHHhhhhh
Confidence 9999998887655432 111111 0127788888887762 232 334689999999999999999
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHc
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYK 463 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~ 463 (561)
.||+||++|++|.|..+.++..+..+.+|.+...|+..++++|+..+..+..+.++++.+|++..+..+.++.+|...|.
T Consensus 224 ~kP~Vyl~N~se~dy~r~knk~l~~i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~ 303 (391)
T KOG1491|consen 224 AKPTVYLLNLSEHDYARKKNKKLPKIKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYS 303 (391)
T ss_pred cCceEEEEecCcchhhhHHHHHHhhhhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHH
Confidence 99999999999998888788889999999988778899999999999999999999999999999877999999999999
Q ss_pred ccCceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCC
Q psy17315 464 SLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGD 543 (561)
Q Consensus 464 ~l~li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~d 543 (561)
.|+|++|||+|++||++|+|++|++|+++|+.||+||.++||.|+|+.|+||+.+||+.+||.+|+.|++||+|+|+|||
T Consensus 304 ~L~li~fFt~G~~eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGD 383 (391)
T KOG1491|consen 304 ALNLIVFFTCGEDEVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGD 383 (391)
T ss_pred hhCceEEEeeCCchheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC
Q psy17315 544 IIFFKFNA 551 (561)
Q Consensus 544 i~~~~~~~ 551 (561)
||+||||.
T Consensus 384 Ii~FK~~~ 391 (391)
T KOG1491|consen 384 IIFFKFNP 391 (391)
T ss_pred EEEEeecC
Confidence 99999984
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=533.67 Aligned_cols=344 Identities=42% Similarity=0.642 Sum_probs=302.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCcccc-------------------ccCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNENN-------------------KVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~~-------------------~~~~~i~l~DtpG~~~~~ 155 (561)
++++||||+||+|||||||+||+... .++++|+||.+++.+. ..+..+.++|.||++.+.
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 37899999999999999999999997 9999999999998871 123579999999999999
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
+.+.+++++|+++++++|+++||+
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVv-------------------------------------------------------- 105 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVV-------------------------------------------------------- 105 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEE--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhh
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR 315 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~ 315 (561)
+.|.+.+++|+.|..||++++..++.++.++|..-++++++++.+....
T Consensus 106 -------------------------------r~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~ 154 (368)
T TIGR00092 106 -------------------------------RCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEG 154 (368)
T ss_pred -------------------------------eCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4457778888889899999999999999999999999999998876542
Q ss_pred CCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCCh
Q psy17315 316 GDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSA 395 (561)
Q Consensus 316 ~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D 395 (561)
. +....+. .++..+..++++ .++.+...+++++..+++.+.+++.||+++|+|-.+
T Consensus 155 ~-k~~~~e~---------------------~ll~~~~~~Le~--~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e 210 (368)
T TIGR00092 155 G-KDKKEEL---------------------LLLEIILPLLNG--GQMARHVDLSKEELILIKSLNLLTKKPIILIANVSE 210 (368)
T ss_pred c-hhhHHHH---------------------HHHHHHHHHHhC--CCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCH
Confidence 1 2222233 788888888887 788887788999999999999999999999999875
Q ss_pred hhhhhhccchHHHHHHHHHhcCC-CCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccc-hHHHHHHHHHcccCceeccc
Q psy17315 396 KDYIKKKNKWLPKIKEWVDANDP-GATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATS-VLDKIITQGYKSLQLQYFFT 472 (561)
Q Consensus 396 ~d~~~~~~~~~~~l~~~~~~~~~-~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~-~l~~li~~~~~~l~li~~~t 472 (561)
.+..++.+.+...++ |.....| +..++++||+.+..+.+|.++++.+|++.++ .++ +++++++..|++|+|++|||
T Consensus 211 ~~~~~~n~~~~~~~~-~~~~~~~~~~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT 289 (368)
T TIGR00092 211 DYLRNLNNNYLLIVE-WIAAYSKGDPKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFT 289 (368)
T ss_pred HHhhhcccHHHHHHH-HHhhcCcCCCeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEc
Confidence 443221133444444 7666322 4678999999999999999999999999999 777 99999999999999999999
Q ss_pred cCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEecC
Q psy17315 473 AGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551 (561)
Q Consensus 473 ~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~~ 551 (561)
+|++|+|||++++|+||++|||.|||||+||||+|||++|+||+++||+++||++|+.|++||+|+|||||||+||||+
T Consensus 290 ~g~~EvRaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~fnv 368 (368)
T TIGR00092 290 GGKEEVRAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFNV 368 (368)
T ss_pred CCCceeEEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=406.71 Aligned_cols=330 Identities=28% Similarity=0.412 Sum_probs=250.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--------------------------ccCCeEEEEeCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--------------------------KVPAFLNVVDIA 149 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--------------------------~~~~~i~l~Dtp 149 (561)
+++||+||+||||||||||+|++....++++||+|++++.+. ..+..++++|||
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 368999999999999999999999888899999999998863 122468899999
Q ss_pred CcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCc
Q psy17315 150 GLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKT 229 (561)
Q Consensus 150 G~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~ 229 (561)
|++.+.+.+.+++++|++++++||+++||+|+..
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~---------------------------------------------- 114 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG---------------------------------------------- 114 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC----------------------------------------------
Confidence 9999888888999999999999999999997531
Q ss_pred cHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHH
Q psy17315 230 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 230 ~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l 309 (561)
..-..+.+.+ .|..||.++++++..||.+||..-+++++.++
T Consensus 115 -------------------------------------~~~~~~~~~~-~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~ 156 (396)
T PRK09602 115 -------------------------------------STDEEGNPVE-PGSHDPVEDIKFLEEELDMWIYGILEKNWEKF 156 (396)
T ss_pred -------------------------------------CcccCCcccC-CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0001122233 57889999999999999999999999998888
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
.+....+......+.+... . .-++.. ..|.+++++. ..+.+...|++++...+..+.+++.||+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~l-~--------~~~~~e----~~v~~~L~~~-g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~ 222 (396)
T PRK09602 157 SRKAQAEKFDIEEALAEQL-S--------GLGINE----EHVKEALREL-GLPEDPSKWTDEDLLELARELRKISKPMVI 222 (396)
T ss_pred HHHHhcCCcchHHHHHHHH-h--------hhccCH----HHHHHHHHHc-CCcCcccCCCHHHHHHHHHhhhhcCCCEEE
Confidence 7665432211111110000 0 001111 3455666532 455666789999999999888888899999
Q ss_pred EecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCC---------------------CCHHHH------H
Q psy17315 390 LVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVD---------------------MPDDER------Q 442 (561)
Q Consensus 390 v~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~---------------------L~~~~~------~ 442 (561)
|+||+|. .. .+..+..+.++ ++..++++||+.|.++.+ +.++.. .
T Consensus 223 VlNK~D~--~~-~~~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IR 294 (396)
T PRK09602 223 AANKADL--PP-AEENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIR 294 (396)
T ss_pred EEEchhc--cc-chHHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHH
Confidence 9999953 22 22234444443 356799999999999877 433321 2
Q ss_pred HHHHHhcccchHHHHH-HHHHcccCceeccccCC----------CceeccccCCCCCccccccccccccCCCeEEEEEec
Q psy17315 443 RYLDEQKATSVLDKII-TQGYKSLQLQYFFTAGQ----------DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMH 511 (561)
Q Consensus 443 ~~~~~~~~~~~l~~li-~~~~~~l~li~~~t~~~----------~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~ 511 (561)
+|+..++. +++.+++ +.+|+.|+|++|||+++ .+.|+|++++|+||+|+|+.|||||+++||||+.
T Consensus 295 k~l~~~g~-~~~~~~i~~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~-- 371 (396)
T PRK09602 295 EVLKKYGG-TGVQEAINTAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAID-- 371 (396)
T ss_pred HHHHHhCC-chHHHHHHHHHHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhc--
Confidence 67777776 5677777 99999999999999875 4567999999999999999999999999999992
Q ss_pred hhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEe
Q psy17315 512 FDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 549 (561)
Q Consensus 512 ~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~ 549 (561)
|+ +.|++|++|+|+|||||+|.-
T Consensus 372 ------------~~---~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 372 ------------AR---TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred ------------cc---CCcccCCCcEecCCCEEEEEe
Confidence 22 579999999999999999974
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=313.54 Aligned_cols=296 Identities=24% Similarity=0.306 Sum_probs=203.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...+|++||+||||||||+|+||+.+..++.+||||..+..++ +.+.+|+++|+||++.+++.+.+.+.++++.+|+|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 3468999999999999999999999999999999999999985 46679999999999999999999999999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
|+|++|+|+.. ...+++.+..+|...+.. +|| ..+.+.+--+
T Consensus 142 DlIiiVld~~~------------~~~~~~~i~~ELe~~GIr-lnk-------------------------~~p~V~I~kk 183 (365)
T COG1163 142 DLIIIVLDVFE------------DPHHRDIIERELEDVGIR-LNK-------------------------RPPDVTIKKK 183 (365)
T ss_pred CEEEEEEecCC------------ChhHHHHHHHHHHhcCeE-ecC-------------------------CCCceEEEEe
Confidence 99999997641 122244555555443211 111 0011111111
Q ss_pred CCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh-HhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhh
Q psy17315 253 PNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN-EELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFS 331 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~-~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 331 (561)
...| +.+.+ .+++=.|..-+ ..+-+.+
T Consensus 184 ~~gG------------------------------I~i~~t~~l~~~d~~~i----r~iL~Ey------------------ 211 (365)
T COG1163 184 ESGG------------------------------IRINGTGPLTHLDEDTV----RAILREY------------------ 211 (365)
T ss_pred ccCC------------------------------EEEecccccccCCHHHH----HHHHHHh------------------
Confidence 1111 11111 11222332222 1111121
Q ss_pred hhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHH
Q psy17315 332 FIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKE 411 (561)
Q Consensus 332 di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~ 411 (561)
.|.++++.. +.....++-+..+... ..++|+|+|+||+ |+.. .+.++.+.+
T Consensus 212 ---------~I~nA~V~I--------------r~dvTlDd~id~l~~n--rvY~p~l~v~NKi--D~~~--~e~~~~l~~ 262 (365)
T COG1163 212 ---------RIHNADVLI--------------REDVTLDDLIDALEGN--RVYKPALYVVNKI--DLPG--LEELERLAR 262 (365)
T ss_pred ---------CcccceEEE--------------ecCCcHHHHHHHHhhc--ceeeeeEEEEecc--cccC--HHHHHHHHh
Confidence 111112211 0011112223333333 2589999999999 4432 223333333
Q ss_pred HHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceeccccCCCce----eccccCCCC
Q psy17315 412 WVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEV----KAWTIQKGT 487 (561)
Q Consensus 412 ~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~t~~~~ev----~a~~~~~g~ 487 (561)
..+.+++||+.+.|+++| .+.+|+.|+|+++||..+++. ++..+++|+
T Consensus 263 -------~~~~v~isa~~~~nld~L---------------------~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~Gs 314 (365)
T COG1163 263 -------KPNSVPISAKKGINLDEL---------------------KERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGS 314 (365)
T ss_pred -------ccceEEEecccCCCHHHH---------------------HHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCC
Confidence 236899999999997666 334799999999999988876 788999999
Q ss_pred CccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEe
Q psy17315 488 KAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 549 (561)
Q Consensus 488 ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~ 549 (561)
|+.|+|.+||+||.+.|.||.||+.+- +..+|++|.+|+|+|||||+|+-
T Consensus 315 TV~Dvc~~IH~~l~~~FryA~VWGkSv------------k~~~QrVG~dHvLeD~DIV~I~~ 364 (365)
T COG1163 315 TVGDVCRKIHRDLVENFRYARVWGKSV------------KHPGQRVGLDHVLEDEDIVEIHA 364 (365)
T ss_pred cHHHHHHHHHHHHHHhcceEEEeccCC------------CCCccccCcCcCccCCCeEEEee
Confidence 999999999999999999999999973 55679999999999999999873
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=303.51 Aligned_cols=254 Identities=50% Similarity=0.800 Sum_probs=214.8
Q ss_pred EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-------------------cCCeEEEEeCCCcccCCcccc
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-------------------VPAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-------------------~~~~i~l~DtpG~~~~~~~~~ 159 (561)
||+||+||||||||||+||+....++++||+|++++.+.. .+.++.++||||++.+.+.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999999999999999999988621 123599999999999888888
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhh
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLG 239 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~ 239 (561)
+++++|+.++++||+++||||+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~---------------------------------------------------------- 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC---------------------------------------------------------- 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC----------------------------------------------------------
Confidence 9999999999999999999953
Q ss_pred hcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 240 RVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 240 ~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
|.+..++++.|.+||++|+.++..|+.+||..-++++++++.+...+..+.
T Consensus 103 -----------------------------f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~~~ 153 (274)
T cd01900 103 -----------------------------FEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKE 153 (274)
T ss_pred -----------------------------cCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHH
Confidence 355667777899999999999999999999999999999988775433222
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
...++ .++.+|.+++++ ..+.+...|+++|.+.|+.+.+++.||+++|+|+.|.|..
T Consensus 154 ~~~e~---------------------~~l~~~~~~L~~--~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~ 210 (274)
T cd01900 154 AKAEL---------------------ELLEKIKEHLEE--GKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLA 210 (274)
T ss_pred HHHHH---------------------HHHHHHHHHHHc--CCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhc
Confidence 22222 788889999988 7777778999999999999999999999999999976654
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHccc
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSL 465 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l 465 (561)
. .+....++..+.... +.+++++||+.+..|.+|.++++++|++.+| .+++++++++.+|+.|
T Consensus 211 ~-~~~~~~~~~~~~~~~--~~~~i~~sa~~E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 211 N-GNNKVLKVREIAAKE--GAEVIPISAKIEAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred c-ccHHHHHHHHHHhcC--CCeEEEeeHHHHHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 2 344455565555442 6789999999999999999999999999999 7789999999999875
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=316.44 Aligned_cols=322 Identities=22% Similarity=0.262 Sum_probs=219.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc--cccCCeEEEEeCCCcccCC--cccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGA--AEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~--~~~~~~~~~~l~~i~~ 171 (561)
..|+|||.||||||||||+|+++. +.|+++||+|+|...+ .+.+..+.++||+|+.... .-...+..+.+.++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 569999999999999999999998 8999999999999876 3567789999999998644 2234566777889999
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcC---------CCC-----CccHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKM---------GPK-----KTDEGE 233 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~---------~~~-----~~~~~~ 233 (561)
||++|+|||+.. ....-| .+.+.|+...++ |+||+|..+.. +++ ++.|..
T Consensus 84 ADvilfvVD~~~------------Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE------------GITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC------------CCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhcc
Confidence 999999999752 011112 233445544344 89999997442 221 233322
Q ss_pred -----HHHHhhhc---------C--CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhh
Q psy17315 234 -----KKMLLGRV---------G--TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELR 295 (561)
Q Consensus 234 -----l~~l~~~~---------~--~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~ 295 (561)
++.+...+ . ...+++++|+||+|||+|+|+|.++ +...++..+||| |++. .+++.+..+.
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilge--eR~Iv~~~aGTTRD~I~~~~e~~~~~~~ 229 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGE--ERVIVSDIAGTTRDSIDIEFERDGRKYV 229 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccC--ceEEecCCCCccccceeeeEEECCeEEE
Confidence 33333331 1 2468999999999999999999998 888899999997 6663 4566678899
Q ss_pred cccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 296 LKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 296 l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
++||+|++++-. +.. . .|..+.+ .....|.+++++..|+|+. ...+++|..+
T Consensus 230 liDTAGiRrk~k-i~e--------~-~E~~Sv~--------rt~~aI~~a~vvllviDa~----------~~~~~qD~~i 281 (444)
T COG1160 230 LIDTAGIRRKGK-ITE--------S-VEKYSVA--------RTLKAIERADVVLLVIDAT----------EGISEQDLRI 281 (444)
T ss_pred EEECCCCCcccc-ccc--------c-eEEEeeh--------hhHhHHhhcCEEEEEEECC----------CCchHHHHHH
Confidence 999999865311 110 0 0111111 0112233344444333321 2456667666
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhccchHH----HHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLP----KIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-- 449 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~----~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-- 449 (561)
...... .++++++|+||| |+++..+...+ +++..+... .+.|+++|||+++.|+.+|.+...+.|.....
T Consensus 282 a~~i~~-~g~~~vIvvNKW--Dl~~~~~~~~~~~k~~i~~~l~~l-~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 282 AGLIEE-AGRGIVIVVNKW--DLVEEDEATMEEFKKKLRRKLPFL-DFAPIVFISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred HHHHHH-cCCCeEEEEEcc--ccCCchhhHHHHHHHHHHHHhccc-cCCeEEEEEecCCCChHHHHHHHHHHHHHhcccc
Confidence 554443 799999999999 44432222333 333333222 37899999999999999999888887765533
Q ss_pred ccchHHHHHHHHHcc
Q psy17315 450 ATSVLDKIITQGYKS 464 (561)
Q Consensus 450 ~~~~l~~li~~~~~~ 464 (561)
+++.+++.++.+...
T Consensus 358 ~Ts~LN~~l~~a~~~ 372 (444)
T COG1160 358 STSLLNRVLEDAVAK 372 (444)
T ss_pred CHHHHHHHHHHHHHh
Confidence 889999998887654
|
|
| >PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=240.04 Aligned_cols=84 Identities=68% Similarity=1.097 Sum_probs=76.4
Q ss_pred ceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEE
Q psy17315 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIF 546 (561)
Q Consensus 467 li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~ 546 (561)
|++|||+||+|+|||++++|+||+++||.|||||+||||+|||++|+||+++||+++||++|+.|++||||+|||||||+
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~ 80 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEE
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q psy17315 547 FKFN 550 (561)
Q Consensus 547 ~~~~ 550 (561)
|+||
T Consensus 81 f~fN 84 (84)
T PF06071_consen 81 FRFN 84 (84)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9998
|
While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A. |
| >cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=232.20 Aligned_cols=83 Identities=75% Similarity=1.193 Sum_probs=82.1
Q ss_pred ceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEE
Q psy17315 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIF 546 (561)
Q Consensus 467 li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~ 546 (561)
|++|||+|++|+|||++++|+||+++||.|||||+||||+|||++|+||+++||+++||++|+.|.+||+|+|+||||++
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q psy17315 547 FKF 549 (561)
Q Consensus 547 ~~~ 549 (561)
|+|
T Consensus 81 f~f 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
Confidence 998
|
The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=239.20 Aligned_cols=295 Identities=19% Similarity=0.281 Sum_probs=206.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...+|+++|+|.||||||+..+|+.+...+.+.|+|..-..+. +.+..|+++|.||++++++++.+.+++..+..|.|
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 3468999999999999999999999988899999999887774 45678999999999999999999999999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
|+|++|+|++- ...+-..+..+|...+.+ +|| ..+.|.+--+
T Consensus 141 DlilMvLDatk------------~e~qr~~le~ELe~vGiR-LNk-------------------------~~Pniy~k~k 182 (364)
T KOG1486|consen 141 DLILMVLDATK------------SEDQREILEKELEAVGIR-LNK-------------------------RKPNIYFKKK 182 (364)
T ss_pred cEEEEEecCCc------------chhHHHHHHHHHHHhcee-ccC-------------------------CCCCeEEEee
Confidence 99999999862 122233455555554322 222 2233433333
Q ss_pred CCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhh
Q psy17315 253 PNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSF 332 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~d 332 (561)
.+.|+ ++ +++.|...+ | ++.+..+-..+
T Consensus 183 k~gGi-----------------~f--~~T~~lT~~----------~----ek~i~~ILhey------------------- 210 (364)
T KOG1486|consen 183 KTGGI-----------------SF--NTTVPLTHC----------D----EKLIYTILHEY------------------- 210 (364)
T ss_pred ccCCe-----------------EE--eeeeccccc----------c----HHHHHHHHHHH-------------------
Confidence 33332 22 122222111 1 11111111121
Q ss_pred hhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHH
Q psy17315 333 IYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEW 412 (561)
Q Consensus 333 i~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~ 412 (561)
.|.+++++. +.....++-+.++.... ...|+++|.||+|. + .++++...
T Consensus 211 --------kI~Naevl~--------------ReD~t~DdfIDvi~gnr--~Y~~ClYvYnKID~--v-----s~eevdrl 259 (364)
T KOG1486|consen 211 --------KIHNAEVLF--------------REDCTVDDFIDVIEGNR--VYIKCLYVYNKIDQ--V-----SIEEVDRL 259 (364)
T ss_pred --------eeccceEEE--------------ecCCChHHHHHHHhccc--eEEEEEEEeeccce--e-----cHHHHHHH
Confidence 122222211 11122233344454333 47899999999943 3 24455554
Q ss_pred HHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceeccccCCCce----eccccCCCCC
Q psy17315 413 VDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEV----KAWTIQKGTK 488 (561)
Q Consensus 413 ~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~t~~~~ev----~a~~~~~g~t 488 (561)
++. ++.+.||+....|++ .+++.+|+.|+|.++||..+++. ++..+++|+|
T Consensus 260 Ar~----PnsvViSC~m~lnld---------------------~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~t 314 (364)
T KOG1486|consen 260 ARQ----PNSVVISCNMKLNLD---------------------RLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGST 314 (364)
T ss_pred hcC----CCcEEEEeccccCHH---------------------HHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCc
Confidence 432 345778988777744 44566899999999999987765 8899999999
Q ss_pred ccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 489 APQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 489 a~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
..++|..||.+|...|.||-||+.+. +..+|++|-.|.++|+|||.+
T Consensus 315 ve~~C~~iHr~l~~qfkyAlVWGtSa------------khsPQrvgl~h~~~dEdvvqi 361 (364)
T KOG1486|consen 315 VEDVCHRIHRTLAAQFKYALVWGTSA------------KHSPQRVGLGHTLEDEDVVQI 361 (364)
T ss_pred HHHHHHHHHHHHHHhhceeeEecccc------------ccCcceeccccccccccceee
Confidence 99999999999999999999999985 788999999999999999986
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=244.82 Aligned_cols=242 Identities=26% Similarity=0.402 Sum_probs=176.4
Q ss_pred EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--------------------------cCCeEEEEeCCCcc
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--------------------------VPAFLNVVDIAGLV 152 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--------------------------~~~~i~l~DtpG~~ 152 (561)
|++||+||||||||||+||+....++++||+|.+++.+.. ....++++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999998899999999999987611 12368999999999
Q ss_pred cCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHH
Q psy17315 153 KGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEG 232 (561)
Q Consensus 153 ~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~ 232 (561)
++.+.+.+++++|++++++||+++||+|...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~------------------------------------------------- 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG------------------------------------------------- 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC-------------------------------------------------
Confidence 8888788899999999999999999997541
Q ss_pred HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHH
Q psy17315 233 EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKL 312 (561)
Q Consensus 233 ~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~ 312 (561)
.-....++++.|..||.++++++..||.+||..-+++++.++.+.
T Consensus 112 -----------------------------------~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~ 156 (318)
T cd01899 112 -----------------------------------GTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRK 156 (318)
T ss_pred -----------------------------------CcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 002334567778899999999999999999999999999998876
Q ss_pred HhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEec
Q psy17315 313 VQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVN 392 (561)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~N 392 (561)
...+........ ...+ ..-++.+ ..|...++.. ..+.+...|++.+.+.+....+++.+|+|+|+|
T Consensus 157 ~~~~~~~~~~~~-~~~~--------~~~~~~~----~~v~~~L~~~-~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlN 222 (318)
T cd01899 157 ADAEKTDIVEAL-SEQL--------SGFGVNE----KDVIEALEEL-ELPEDLSKWTDEDLLRLARALRKRSKPMVIAAN 222 (318)
T ss_pred HhcCCccHHHHH-HHHH--------hhccccH----HHHHHHHHhC-CCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 653322211111 0000 0001122 2334455441 324555689999999988888888999999999
Q ss_pred CChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 393 K~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
|+| +.. .+...+.+.. ..++.+++++||+.|.++.+|.++...+|+
T Consensus 223 K~D--l~~-~~~~~~~l~~----~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 223 KAD--IPD-AENNISKLRL----KYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred HHH--ccC-hHHHHHHHHh----hCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 995 332 2223333322 123578999999999999998765555554
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-28 Score=261.84 Aligned_cols=326 Identities=20% Similarity=0.219 Sum_probs=192.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-cccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i 169 (561)
....+|++||.||||||||+|+|++.. ..+++.||+|++..... ..+..+.++||||+...... ...+......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 445789999999999999999999877 67889999999876642 23456899999998632211 112223334567
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcC---------CCC----------
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKM---------GPK---------- 227 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~---------~~~---------- 227 (561)
+.||++++|+|++..... . -..+.+.+.....+ |+||+|+.+.. ++.
T Consensus 116 ~~aD~il~VvD~~~~~s~--------~---~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g 184 (472)
T PRK03003 116 RTADAVLFVVDATVGATA--------T---DEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHG 184 (472)
T ss_pred HhCCEEEEEEECCCCCCH--------H---HHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCC
Confidence 899999999998732110 0 01122233333333 89999986421 110
Q ss_pred CccHHHHHHHhhhc----------CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhh
Q psy17315 228 KTDEGEKKMLLGRV----------GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELR 295 (561)
Q Consensus 228 ~~~~~~l~~l~~~~----------~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~ 295 (561)
......++.+.... ....++++.|.+|+|||+|+|.+++..+ ..++..+||+ |+... +...+..+.
T Consensus 185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~--~~~s~~~gtT~d~~~~~~~~~~~~~~ 262 (472)
T PRK03003 185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEER--SVVDDVAGTTVDPVDSLIELGGKTWR 262 (472)
T ss_pred CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCccCCcceEEEEECCEEEE
Confidence 11111222222221 1246899999999999999999998742 3344555665 55432 334455678
Q ss_pred cccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 296 LKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 296 l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
+|||||+++....... .++...+ .....+..++++..|++.. ...+..+...
T Consensus 263 l~DTaG~~~~~~~~~~----------~e~~~~~--------~~~~~i~~ad~vilV~Da~----------~~~s~~~~~~ 314 (472)
T PRK03003 263 FVDTAGLRRRVKQASG----------HEYYASL--------RTHAAIEAAEVAVVLIDAS----------EPISEQDQRV 314 (472)
T ss_pred EEECCCccccccccch----------HHHHHHH--------HHHHHHhcCCEEEEEEeCC----------CCCCHHHHHH
Confidence 9999997532111000 0000000 0000112223333332211 1234445555
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhc--cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--cc
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKK--NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--AT 451 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~--~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~~ 451 (561)
+..... .++|+|+|+||+|. .... ......+.+.+... .+.+++++||++|.|++++.+...+.+..... ++
T Consensus 315 ~~~~~~-~~~piIiV~NK~Dl--~~~~~~~~~~~~i~~~l~~~-~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t 390 (472)
T PRK03003 315 LSMVIE-AGRALVLAFNKWDL--VDEDRRYYLEREIDRELAQV-PWAPRVNISAKTGRAVDKLVPALETALESWDTRIPT 390 (472)
T ss_pred HHHHHH-cCCCEEEEEECccc--CChhHHHHHHHHHHHhcccC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCH
Confidence 554433 58999999999954 3211 11122333322221 25789999999999999998887776654422 78
Q ss_pred chHHHHHHHHHcc
Q psy17315 452 SVLDKIITQGYKS 464 (561)
Q Consensus 452 ~~l~~li~~~~~~ 464 (561)
+.+++++..+...
T Consensus 391 ~~ln~~~~~~~~~ 403 (472)
T PRK03003 391 GRLNAWLGELVAA 403 (472)
T ss_pred HHHHHHHHHHHHc
Confidence 8899998887654
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-28 Score=258.39 Aligned_cols=317 Identities=21% Similarity=0.238 Sum_probs=188.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-ccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~D 173 (561)
+|+++|.||||||||+|+|++.. +.+++.||+|++..... ..+..+.++||||+...... ...+......+++++|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 48999999999999999999987 67899999999876652 34567999999998532211 1223344566789999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcCC---------CC-----C-----cc
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKMG---------PK-----K-----TD 230 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~~---------~~-----~-----~~ 230 (561)
++++|+|++.. ....+ .+...+.....+ |+||+|..+... +. + ..
T Consensus 81 ~vl~vvD~~~~------------~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREG------------LTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCC------------CCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCCh
Confidence 99999987521 01111 123334444444 899999865421 10 1 11
Q ss_pred HHHHHHHhhhcC----------CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhccc
Q psy17315 231 EGEKKMLLGRVG----------TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKD 298 (561)
Q Consensus 231 ~~~l~~l~~~~~----------~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~D 298 (561)
...++.+..... ...++.+.|.+|+|||+|+|++++.. ...++..+||+ ++.. .+...+..+.+||
T Consensus 149 ~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~liD 226 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE--RVIVSDIAGTTRDSIDIPFERNGKKYLLID 226 (429)
T ss_pred HHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC--eeecCCCCCceECcEeEEEEECCcEEEEEE
Confidence 112222222221 12579999999999999999999863 22334455665 4432 2233445789999
Q ss_pred HHHHHHHHH---HHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 299 VEHIEKEIN---KIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 299 t~Gi~~~~~---~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
|||+.+... .++.... ...+. .+..+|+++.|++.. ...+..+..+
T Consensus 227 T~G~~~~~~~~~~~e~~~~-------~~~~~--------------~~~~ad~~ilV~D~~----------~~~~~~~~~~ 275 (429)
T TIGR03594 227 TAGIRRKGKVTEGVEKYSV-------LRTLK--------------AIERADVVLLVLDAT----------EGITEQDLRI 275 (429)
T ss_pred CCCccccccchhhHHHHHH-------HHHHH--------------HHHhCCEEEEEEECC----------CCccHHHHHH
Confidence 999753210 0111100 00000 011123333332211 1234455555
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--c
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--A 450 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~ 450 (561)
+..... .++|+++|+||+|. .+ .....+.+.+.+... .++.+++++||++|.|+.++.+.....|..... +
T Consensus 276 ~~~~~~-~~~~iiiv~NK~Dl--~~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~ 351 (429)
T TIGR03594 276 AGLILE-AGKALVIVVNKWDL--VK-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRIS 351 (429)
T ss_pred HHHHHH-cCCcEEEEEECccc--CC-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCC
Confidence 544333 57999999999954 31 112222333222211 135789999999999999998877766654432 6
Q ss_pred cchHHHHHHHHHc
Q psy17315 451 TSVLDKIITQGYK 463 (561)
Q Consensus 451 ~~~l~~li~~~~~ 463 (561)
++.++.++..+..
T Consensus 352 t~~ln~~l~~~~~ 364 (429)
T TIGR03594 352 TSKLNRVLEEAVA 364 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 6778877766543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-27 Score=267.62 Aligned_cols=320 Identities=19% Similarity=0.207 Sum_probs=190.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCc-cccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAA-EGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~-~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||||+|++.. +.+++.||+|++..... +.+..+.+|||||+..... ....+..+...+++.|
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 355 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLA 355 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhC
Confidence 689999999999999999999987 67889999999876642 2345799999999864221 1112333445567899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcC---------CCC----------Cc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKM---------GPK----------KT 229 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~---------~~~----------~~ 229 (561)
|++++|+|++.. ....+ .+.+.+.....+ |+||+|..+.. +.. ..
T Consensus 356 D~iL~VvDa~~~------------~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 356 DAVVFVVDGQVG------------LTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred CEEEEEEECCCC------------CCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCC
Confidence 999999998521 01111 122333333333 88999975431 110 11
Q ss_pred cHHHHHHHhhhc------------CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhh
Q psy17315 230 DEGEKKMLLGRV------------GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELR 295 (561)
Q Consensus 230 ~~~~l~~l~~~~------------~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~ 295 (561)
....+..+.... ....++.+.|.+|+|||+|+|.+++... ..++..+||+ |+... +.+.+..+.
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~--~~v~~~~gtT~d~~~~~~~~~~~~~~ 501 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEER--AVVNDLAGTTRDPVDEIVEIDGEDWL 501 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccc--cccCCCCCCCcCcceeEEEECCCEEE
Confidence 111122222211 1236899999999999999999998742 2334445564 55432 334556788
Q ss_pred cccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 296 LKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 296 l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
+|||||+.+........ ++...+ .....+..++++..|++.. ...+..+...
T Consensus 502 liDTaG~~~~~~~~~~~----------e~~~~~--------r~~~~i~~advvilViDat----------~~~s~~~~~i 553 (712)
T PRK09518 502 FIDTAGIKRRQHKLTGA----------EYYSSL--------RTQAAIERSELALFLFDAS----------QPISEQDLKV 553 (712)
T ss_pred EEECCCcccCcccchhH----------HHHHHH--------HHHHHhhcCCEEEEEEECC----------CCCCHHHHHH
Confidence 99999975422111100 000000 0000112223433332211 1234445555
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--c
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--A 450 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~ 450 (561)
+..... .++|+++|+||+|. ... ...+.+.+.+.. ..++.+++++||++|.|+.+|.+...+.+..... +
T Consensus 554 ~~~~~~-~~~piIiV~NK~DL--~~~--~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~ 628 (712)
T PRK09518 554 MSMAVD-AGRALVLVFNKWDL--MDE--FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIP 628 (712)
T ss_pred HHHHHH-cCCCEEEEEEchhc--CCh--hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence 544332 57999999999954 321 112222222221 1235788999999999999998887777655433 6
Q ss_pred cchHHHHHHHHHc
Q psy17315 451 TSVLDKIITQGYK 463 (561)
Q Consensus 451 ~~~l~~li~~~~~ 463 (561)
++.+++++..+.+
T Consensus 629 T~~Ln~~l~~~~~ 641 (712)
T PRK09518 629 TGKLNAFLGKIQA 641 (712)
T ss_pred hHHHHHHHHHHHh
Confidence 7788888877664
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-27 Score=251.40 Aligned_cols=320 Identities=20% Similarity=0.235 Sum_probs=188.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCc-cccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAA-EGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~-~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|++.. +.+++.||+|++..... ..+..+.+|||||+..... ....+......+++.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 479999999999999999999987 67889999999876542 2346799999999975221 0112333345667899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch---hhccccccCcC---------CCC----------Cc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS---VDAKADSKKKM---------GPK----------KT 229 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~---v~NK~D~~~~~---------~~~----------~~ 229 (561)
|++++|+|++... ... ..+.+.+.....+ |+||+|..+.. +.. ..
T Consensus 82 d~il~vvd~~~~~------------~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGL------------TPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCC------------CHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCC
Confidence 9999999876310 001 1122333333333 89999965421 111 11
Q ss_pred cHHHHHHHhhh---------cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhccc
Q psy17315 230 DEGEKKMLLGR---------VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKD 298 (561)
Q Consensus 230 ~~~~l~~l~~~---------~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~D 298 (561)
....++.+... .....++++.|.+|+|||+|+|++++. ....++..+|++ +.+. .+...+..+.++|
T Consensus 150 v~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~--~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvD 227 (435)
T PRK00093 150 IGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGE--ERVIVSDIAGTTRDSIDTPFERDGQKYTLID 227 (435)
T ss_pred HHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCC--CceeecCCCCceEEEEEEEEEECCeeEEEEE
Confidence 11223333221 123468999999999999999999986 333344555665 3332 2333456789999
Q ss_pred HHHHHHHHH---HHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 299 VEHIEKEIN---KIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 299 t~Gi~~~~~---~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
|||+.+... .++.... ...+. .+..+|+++.|++.. ...+..+..+
T Consensus 228 T~G~~~~~~~~~~~e~~~~-------~~~~~--------------~~~~ad~~ilViD~~----------~~~~~~~~~i 276 (435)
T PRK00093 228 TAGIRRKGKVTEGVEKYSV-------IRTLK--------------AIERADVVLLVIDAT----------EGITEQDLRI 276 (435)
T ss_pred CCCCCCCcchhhHHHHHHH-------HHHHH--------------HHHHCCEEEEEEeCC----------CCCCHHHHHH
Confidence 999743210 0111000 00000 011123333332211 1234455554
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--ccch
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--ATSV 453 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~~~~ 453 (561)
+..... .++|+++|+||+|...........+.+.+.+... ++.+++++||++|.|+.++.+...+.|.+... +++.
T Consensus 277 ~~~~~~-~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~-~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ 354 (435)
T PRK00093 277 AGLALE-AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFL-DYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSV 354 (435)
T ss_pred HHHHHH-cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccc-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHH
Confidence 443332 5799999999995421110111222333222221 36789999999999999998877666654433 6677
Q ss_pred HHHHHHHHHc
Q psy17315 454 LDKIITQGYK 463 (561)
Q Consensus 454 l~~li~~~~~ 463 (561)
+++++..+..
T Consensus 355 ln~~l~~~~~ 364 (435)
T PRK00093 355 LNRVLEEAVE 364 (435)
T ss_pred HHHHHHHHHH
Confidence 8887776543
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=206.90 Aligned_cols=288 Identities=19% Similarity=0.298 Sum_probs=190.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
.+|+++|+|.+||||+++.|++...++..+-|+|.-...+. +.+..+++.|.||+++++..+.+.+.+.+...|.|.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 38999999999999999999999988999999998777763 4567899999999999999999999999999999999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPN 254 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~ 254 (561)
|+.|+|.- .+...-..++.+|...+.+ +||
T Consensus 140 i~~vld~~------------kp~~hk~~ie~eleg~gir-lnk------------------------------------- 169 (358)
T KOG1487|consen 140 IFIVLDVL------------KPLSHKKIIEKELEGFGIR-LNK------------------------------------- 169 (358)
T ss_pred EEEEeecc------------CcccHHHHHHHhhhcceee-ccC-------------------------------------
Confidence 99999642 2233333444444433211 111
Q ss_pred CCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhh
Q psy17315 255 VGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFI 333 (561)
Q Consensus 255 ~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di 333 (561)
+..++ |+. ...-++.+.+.+ .|+.-+...+ ..++....
T Consensus 170 ---------------~pp~i----~~kkKdkgGInlt~~~---LdlD~~rsil----~eyR~hsA--------------- 208 (358)
T KOG1487|consen 170 ---------------QPPNI----GTKKKDKGGINLTGTH---LDLDLQRSIL----SEYRIHSA--------------- 208 (358)
T ss_pred ---------------CCCCc----cccccccCceeeecch---hhHHHHHHHH----HHhhhcch---------------
Confidence 00111 111 000112222111 1211111111 11110000
Q ss_pred hhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHH
Q psy17315 334 YLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWV 413 (561)
Q Consensus 334 ~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~ 413 (561)
+. .++.....++-+..++... ...|+++++||+| .+. ++++. +.
T Consensus 209 ------------di--------------~Lr~DaT~DdLIdvVegnr--~yVp~iyvLNkId--sIS-----iEELd-ii 252 (358)
T KOG1487|consen 209 ------------DI--------------ALRFDATADDLIDVVEGNR--IYVPCIYVLNKID--SIS-----IEELD-II 252 (358)
T ss_pred ------------he--------------eeecCcchhhhhhhhccCc--eeeeeeeeecccc--eee-----eeccc-ee
Confidence 10 0011112222233333332 4799999999994 332 12221 10
Q ss_pred HhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceeccccCCCceecccc----C-CCCC
Q psy17315 414 DANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTI----Q-KGTK 488 (561)
Q Consensus 414 ~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~t~~~~ev~a~~~----~-~g~t 488 (561)
+.....+|+||.++.++++| +..+++.|+|...||..+++.-.+.. . .-++
T Consensus 253 ---~~iphavpISA~~~wn~d~l---------------------L~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~s 308 (358)
T KOG1487|consen 253 ---YTIPHAVPISAHTGWNFDKL---------------------LEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRS 308 (358)
T ss_pred ---eeccceeecccccccchHHH---------------------HHHHhhcchheEEecCCCCCCCCCCCCceecCCccc
Confidence 11356799999999997766 34479999999999998777744333 3 3488
Q ss_pred ccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 489 APQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 489 a~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
..|+|.+||+++.+.|.+|-||+.+- +..+|++|++|+++|.|||.|
T Consensus 309 v~dfc~~ih~~~~~~fk~alvwg~s~------------kh~pq~vg~~h~l~dedvv~i 355 (358)
T KOG1487|consen 309 VEDFCNKIHKSILKQFKYALVWGSSV------------KHNPQRVGKEHVLEDEDVVQI 355 (358)
T ss_pred HHHHHHHHHHHHHHhhhhheEecccc------------CcChhhcchhheeccchhhhh
Confidence 99999999999999999999999885 677899999999999999976
|
|
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-24 Score=214.10 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=119.2
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhh-h-cCCCCc-----cCCCChHHHHHHHHHHHhcCCCc-cccccccCC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQIL-I-SDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK-ADSKKKMGP 78 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~-~-~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~-~~~~~~~~~ 78 (561)
+++|||+|||+| +||||+..|+ +++ . ++|+.+ .||+|++++++|+.||+.+++.+ +.+.++...
T Consensus 148 DVVleVlDARDP------lgtR~~~vE~--~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 148 DVVLEVLDARDP------LGTRCPEVEE--AVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred heEEEeeeccCC------CCCCChhHHH--HHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 689999999999 9999999999 221 1 455554 99999999999999999999998 222222211
Q ss_pred CC-----------c----hhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCe
Q psy17315 79 KK-----------T----DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAF 142 (561)
Q Consensus 79 ~~-----------~----~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~ 142 (561)
.. . ......+..+.....+++||||+|||||||+||+|...+ +.+++.||.|+..+. ...+..
T Consensus 220 ~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe-V~Ldk~ 298 (435)
T KOG2484|consen 220 SNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE-VKLDKK 298 (435)
T ss_pred ccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh-eeccCC
Confidence 10 1 111111223334677999999999999999999999888 999999999999766 778889
Q ss_pred EEEEeCCCcccCCccccccccccccccccCCEEEEEecc
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKE 181 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~ 181 (561)
|.|+|.||++.+...+.. --.+++|.-+-.+.|.
T Consensus 299 i~llDsPgiv~~~~~~~~-----~~~Lrn~~~i~~~~dp 332 (435)
T KOG2484|consen 299 IRLLDSPGIVPPSIDEKD-----ALALRNCIPIGKVADP 332 (435)
T ss_pred ceeccCCceeecCCCccc-----hhhhhcccccccccCc
Confidence 999999999976654332 1224556555556543
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-23 Score=210.78 Aligned_cols=142 Identities=25% Similarity=0.357 Sum_probs=116.2
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcC-CCc--ccccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKL-RPK--ADSKKKM 76 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~-~~~--~~~~~~~ 76 (561)
..++++||+|||+| ++||||.+++ +..+|+++ +||+|+..+++|.+++.++. ... .+++.+.
T Consensus 34 ~~d~vvevvDar~P------~~s~~~~l~~----~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~ 103 (322)
T COG1161 34 SVDVVVEVVDARDP------LGTRNPELER----IVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQ 103 (322)
T ss_pred cCCEEEEEEecccc------ccccCccHHH----HHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeeccc
Confidence 46789999999999 9999999999 99999886 99999999999999999885 333 6666666
Q ss_pred CCCCch---------hhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEE
Q psy17315 77 GPKKTD---------EGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 77 ~~~~~~---------~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~ 146 (561)
+.+... ........+......++++||+||||||||||+|.++. +.+++.||+|++.+. ......++|+
T Consensus 104 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~-i~~~~~i~Ll 182 (322)
T COG1161 104 GGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW-IKLDDGIYLL 182 (322)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEE-EEcCCCeEEe
Confidence 555522 22222233334456889999999999999999999998 899999999999765 6777789999
Q ss_pred eCCCcccCCcc
Q psy17315 147 DIAGLVKGAAE 157 (561)
Q Consensus 147 DtpG~~~~~~~ 157 (561)
||||++.+...
T Consensus 183 DtPGii~~~~~ 193 (322)
T COG1161 183 DTPGIIPPKFD 193 (322)
T ss_pred cCCCcCCCCcc
Confidence 99999987754
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-22 Score=179.86 Aligned_cols=149 Identities=24% Similarity=0.339 Sum_probs=109.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc--ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||||+|+|.+..++++||+|.+...+.. .+..+.++||||+....+. ++.+...++. -...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 479999999999999999999999999999999999877643 4678999999999865432 2233333332 2678
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++|+|++. +.+.+. +..++.++..+ ++||+|..++.+... +.+.+++.++. +.+++
T Consensus 80 D~ii~VvDa~~------------l~r~l~-l~~ql~e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~----pvi~~ 141 (156)
T PF02421_consen 80 DLIIVVVDATN------------LERNLY-LTLQLLELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGV----PVIPV 141 (156)
T ss_dssp SEEEEEEEGGG------------HHHHHH-HHHHHHHTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-----EEEE
T ss_pred CEEEEECCCCC------------HHHHHH-HHHHHHHcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCC----CEEEE
Confidence 99999998762 334443 45566777777 999999998887654 34455555543 79999
Q ss_pred EccCCCCHHHHHHHH
Q psy17315 250 VGVPNVGKSTFFNVL 264 (561)
Q Consensus 250 sg~~~~Gks~l~~~l 264 (561)
||+++.|.+.|++++
T Consensus 142 sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 142 SARTGEGIDELKDAI 156 (156)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred EeCCCcCHHHHHhhC
Confidence 999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=183.00 Aligned_cols=159 Identities=26% Similarity=0.454 Sum_probs=133.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
-..||+||+||+|||||+|+|+..+..++.|+|||..|+.+... ..++.+-|.||++++++.+.+++-.||.+|..|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 35799999999999999999999999999999999999988432 235889999999999999999999999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS--------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+.+++|+|.+... ...+++++++|..+|..+.+. |+||+|.++ +....++.+...+...
T Consensus 276 ~~l~fVvD~s~~~-------~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e------ae~~~l~~L~~~lq~~ 342 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQ-------LRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE------AEKNLLSSLAKRLQNP 342 (366)
T ss_pred ceEEEEEECCCcc-------cCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh------HHHHHHHHHHHHcCCC
Confidence 9999999875221 146788888888888765544 899999972 2333357777777777
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.++++|++++.|...|++.|.+.
T Consensus 343 ~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 343 HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred cEEEeeeccccchHHHHHHHhhc
Confidence 89999999999999999988653
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-20 Score=173.86 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=100.1
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc-cccccccC---
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK-ADSKKKMG--- 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~-~~~~~~~~--- 77 (561)
+++|+|+|||.| ++++|+.+.+.......++|.+ +||++++.+..|++++++....+ +.+.....
T Consensus 1 DvVl~VvDar~p------~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (172)
T cd04178 1 DVILEVLDARDP------LGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKN 74 (172)
T ss_pred CEEEEEEECCCC------CCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccc
Confidence 468999999999 9999999988211113568887 99999999999999998876544 22211111
Q ss_pred CCC--------------------chh----hhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCccccc
Q psy17315 78 PKK--------------------TDE----GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTID 132 (561)
Q Consensus 78 ~~~--------------------~~~----~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~ 132 (561)
... .+. .............++++++|+||||||||||+|++.. +.+++.||+|++
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~ 154 (172)
T cd04178 75 LGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS 154 (172)
T ss_pred hhhcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc
Confidence 000 000 0111122223445899999999999999999999988 799999999998
Q ss_pred CccccccCCeEEEEeCCCc
Q psy17315 133 PNENNKVPAFLNVVDIAGL 151 (561)
Q Consensus 133 ~~~~~~~~~~i~l~DtpG~ 151 (561)
.+. ...+.+++++||||+
T Consensus 155 ~~~-~~~~~~~~l~DtPGi 172 (172)
T cd04178 155 MQE-VHLDKKVKLLDSPGI 172 (172)
T ss_pred eEE-EEeCCCEEEEECcCC
Confidence 665 444567999999996
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-20 Score=182.48 Aligned_cols=164 Identities=20% Similarity=0.144 Sum_probs=121.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~ 172 (561)
.-|++||.||||||||+|+|.|.+ +.+|+.|.|||....+.. ...++.++||||+..+.+. +..|......++.++
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccC
Confidence 358999999999999999999999 889999999999988854 3569999999999988653 445666678889999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|+++||+|+...- . ..-..+.+.+.....+ +.||+|..+.... .......+....+....+++
T Consensus 87 Dlilfvvd~~~~~---------~--~~d~~il~~lk~~~~pvil~iNKID~~~~~~~---l~~~~~~~~~~~~f~~ivpi 152 (298)
T COG1159 87 DLILFVVDADEGW---------G--PGDEFILEQLKKTKTPVILVVNKIDKVKPKTV---LLKLIAFLKKLLPFKEIVPI 152 (298)
T ss_pred cEEEEEEeccccC---------C--ccHHHHHHHHhhcCCCeEEEEEccccCCcHHH---HHHHHHHHHhhCCcceEEEe
Confidence 9999999875200 0 0011222333332122 8999999854321 12334455555677789999
Q ss_pred EccCCCCHHHHHHHHHhhccCCCcc
Q psy17315 250 VGVPNVGKSTFFNVLTKRAFEDDDV 274 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~~~~~v 274 (561)
||+.|.|++.|++.+...+++...+
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpeg~~~ 177 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPEGPWY 177 (298)
T ss_pred eccccCCHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999987654443
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-20 Score=187.08 Aligned_cols=140 Identities=20% Similarity=0.223 Sum_probs=106.9
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc--------cCCCChHHHHHHHHHHHhcCCCc-cccccc--
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW--------GDGDGPKAPKRRKQHLSDKLRPK-ADSKKK-- 75 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l--------~DL~~~~~~~~w~~~l~~~~~~~-~~~~~~-- 75 (561)
++++.|+|||+| .+|||+.+++ .+...+|+- +||+|.+++.+|+..|.++.+++ ..+.-.
T Consensus 215 DVvvqVlDARDP------mGTrc~~ve~---ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~ns 285 (572)
T KOG2423|consen 215 DVVVQVLDARDP------MGTRCKHVEE---YLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNS 285 (572)
T ss_pred ceeEEeeeccCC------cccccHHHHH---HHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCc
Confidence 678999999999 9999999999 333444443 99999999999999999999888 222222
Q ss_pred cCCCCchhhhHhhh-hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCccc
Q psy17315 76 MGPKKTDEGEKKML-LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVK 153 (561)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~ 153 (561)
.+........+.-. ..-....+.||+|||||+||||+||+|..++ +.+++.||.|+-.+. ...-..|+|||+||++.
T Consensus 286 fGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY-ItLmkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 286 FGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY-ITLMKRIFLIDCPGVVY 364 (572)
T ss_pred cchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHH-HHHHhceeEecCCCccC
Confidence 22222222222222 2223456899999999999999999999988 999999999986554 44556799999999998
Q ss_pred CCc
Q psy17315 154 GAA 156 (561)
Q Consensus 154 ~~~ 156 (561)
+..
T Consensus 365 ps~ 367 (572)
T KOG2423|consen 365 PSS 367 (572)
T ss_pred CCC
Confidence 775
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-20 Score=190.31 Aligned_cols=143 Identities=19% Similarity=0.155 Sum_probs=109.1
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--ccccc--ccC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKK--KMG 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~--~~~ 77 (561)
++++.|+|||.| +-.|||.|++|.+.+..+|..+ +||.++++..+|.+||++++..+ .++.. ...
T Consensus 176 DivvqIVDARnP------llfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~ 249 (562)
T KOG1424|consen 176 DIVVQIVDARNP------LLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQL 249 (562)
T ss_pred ceEEEEeecCCc------cccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccc
Confidence 678999999999 9999999999777777766655 99999999999999999988766 22222 000
Q ss_pred CC----C----------chh----------hhHhh-----------h-----------hcCCCCCcEEEEEEcCCCCHHH
Q psy17315 78 PK----K----------TDE----------GEKKM-----------L-----------LGRVGTNLKVGIVGVPNVGKST 111 (561)
Q Consensus 78 ~~----~----------~~~----------~~~~~-----------~-----------~~~~~~~~~v~ivG~pnvGKSt 111 (561)
.. . ... ..+.. . ..+...-++||+||||||||||
T Consensus 250 ~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSS 329 (562)
T KOG1424|consen 250 ESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSS 329 (562)
T ss_pred cccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhH
Confidence 00 0 000 00000 0 0001113799999999999999
Q ss_pred HHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCc
Q psy17315 112 FFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 112 lin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~ 156 (561)
+||+|.|.+ +.|+.+||.|++.++ ..+...+.|+||||++.|..
T Consensus 330 TINaLvG~KkVsVS~TPGkTKHFQT-i~ls~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 330 TINALVGRKKVSVSSTPGKTKHFQT-IFLSPSVCLCDCPGLVFPSF 374 (562)
T ss_pred HHHHHhcCceeeeecCCCCcceeEE-EEcCCCceecCCCCccccCC
Confidence 999999998 999999999999988 67778899999999997764
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=178.59 Aligned_cols=161 Identities=26% Similarity=0.387 Sum_probs=122.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..||+||+||||||||+|+++..+..+++|||||..|+-+.. ....+.+-|.||++++++++.+++.+||.+|..|-
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 469999999999999999999999999999999999988842 24468999999999999999999999999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--------hhccccccCcCCCCCccHHHHHHHhh-hcCCC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS--------VDAKADSKKKMGPKKTDEGEKKMLLG-RVGTN 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------v~NK~D~~~~~~~~~~~~~~l~~l~~-~~~~~ 244 (561)
+++||+|.+..+ ...+.+....+.++|..+... |+||+|..... .....+...+. .....
T Consensus 240 vL~hviD~s~~~-------~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~----e~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 240 VLLHVIDLSPID-------GRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE----EELEELKKALAEALGWE 308 (369)
T ss_pred eeEEEEecCccc-------CCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH----HHHHHHHHHHHHhcCCC
Confidence 999999876322 234556666677777655433 89999966211 11122222222 22222
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+|+.++.|++.|...+.+..
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHH
Confidence 233399999999999999887764
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=178.61 Aligned_cols=153 Identities=25% Similarity=0.279 Sum_probs=111.7
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc---cccccccC-
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK---ADSKKKMG- 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~---~~~~~~~~- 77 (561)
+.+|||+|||+| +||||+.+++ +...||+| .||+|+...+..+++|+.+.... .++.....
T Consensus 48 D~iiEvrDaRiP------Lssrn~~~~~----~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 48 DCIIEVRDARIP------LSSRNELFQD----FLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred cEEEEeeccccC------CccccHHHHH----hcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhh
Confidence 468999999999 9999999999 88899998 99999999999999999875444 33333322
Q ss_pred -CCC-----chhhhHhhhhcC-CCCCcEEEEEEcCCCCHHHHHHHHhcC-----C-CcccCCCcccccCccccc--cCCe
Q psy17315 78 -PKK-----TDEGEKKMLLGR-VGTNLKVGIVGVPNVGKSTFFNVLTKS-----S-AAAENFPFCTIDPNENNK--VPAF 142 (561)
Q Consensus 78 -~~~-----~~~~~~~~~~~~-~~~~~~v~ivG~pnvGKStlin~L~~~-----~-~~~~~~~~~T~~~~~~~~--~~~~ 142 (561)
... ....+......+ ....+.++++|.||||||||||++... + +.+++.||+|+....... ....
T Consensus 118 ~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~ 197 (335)
T KOG2485|consen 118 QVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP 197 (335)
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc
Confidence 111 111222222222 456789999999999999999999642 2 789999999998766433 3346
Q ss_pred EEEEeCCCcccCCccc--ccccccccccc
Q psy17315 143 LNVVDIAGLVKGAAEG--QGLGNAFLSHI 169 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~--~~~~~~~l~~i 169 (561)
++++||||+..|...+ .+++.++...+
T Consensus 198 vy~iDTPGil~P~I~~~e~~lKLAL~g~V 226 (335)
T KOG2485|consen 198 VYLIDTPGILVPSIVDVEDGLKLALCGLV 226 (335)
T ss_pred eEEecCCCcCCCCCCCHHHhhhhhhcccc
Confidence 9999999999887543 34444444333
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-19 Score=183.16 Aligned_cols=159 Identities=27% Similarity=0.411 Sum_probs=119.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c--CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V--PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
-..|++||+||||||||+|+|++....++++||+|+.++.+.. . ...+.++||||+++..+.+.++...|+.++..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3579999999999999999999988889999999999988743 2 347999999999988877778888999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|++++|+|++..+ .++.+..+.+++..+. .+ |+||+|+.+.... ........... ...
T Consensus 238 ~vlI~ViD~s~~~----------s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~---~~~~~~~~~~~-~~~ 303 (335)
T PRK12299 238 RLLLHLVDIEAVD----------PVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE---REKRAALELAA-LGG 303 (335)
T ss_pred CEEEEEEcCCCCC----------CHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH---HHHHHHHHHHh-cCC
Confidence 9999999986322 2444455555554432 12 8999999743221 11112211111 235
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|++++.|+..|+++|.+..
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998764
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=191.20 Aligned_cols=164 Identities=24% Similarity=0.355 Sum_probs=120.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+.-..|++||+||||||||||+|++....++++||+|+.++.+.. .+..+.++||||+++..+.+.++...|+.++..
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 344689999999999999999999988888999999999988743 345799999999998887777888889999999
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--------------ch---hhccccccCcCCCCCccHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--------------RS---VDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------------~~---v~NK~D~~~~~~~~~~~~~~l 234 (561)
||+|+||+|++..+ +.......++.+.++|..+. .+ |+||+|+++.... ...+
T Consensus 237 advLv~VVD~s~~e------~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el----~e~l 306 (500)
T PRK12296 237 CAVLVHVVDCATLE------PGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL----AEFV 306 (500)
T ss_pred cCEEEEEECCcccc------cccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH----HHHH
Confidence 99999999986311 11123334444444443322 12 8999999743211 1112
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...... ..+..+.+|+.++.|+..|+.+|.+..
T Consensus 307 ~~~l~~-~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 307 RPELEA-RGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred HHHHHH-cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 222221 135789999999999999999998764
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-19 Score=179.74 Aligned_cols=140 Identities=28% Similarity=0.374 Sum_probs=107.3
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|+|+|||.| ++++|+.+++ +..++|.+ +||+++...+.|.+++++.+..+ .++..+.+.
T Consensus 25 aDvIL~VvDar~p------~~~~~~~l~~----~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi 94 (287)
T PRK09563 25 VDVVIEVLDARIP------LSSENPMIDK----IIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGV 94 (287)
T ss_pred CCEEEEEEECCCC------CCCCChhHHH----HhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccH
Confidence 4688999999999 9999999988 56678877 99998877889999997655433 566665554
Q ss_pred CCchhhhHh---------hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKTDEGEKK---------MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~~~~~~~---------~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
......... ...+....+.+++++|+||||||||||+|++.. +.+++.||+|++.+. ...+.+++++||
T Consensus 95 ~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~l~Dt 173 (287)
T PRK09563 95 KKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW-IKLGKGLELLDT 173 (287)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE-EEeCCcEEEEEC
Confidence 432111100 011123456899999999999999999999988 799999999999754 556678999999
Q ss_pred CCcccCCc
Q psy17315 149 AGLVKGAA 156 (561)
Q Consensus 149 pG~~~~~~ 156 (561)
||+..+..
T Consensus 174 PGi~~~~~ 181 (287)
T PRK09563 174 PGILWPKL 181 (287)
T ss_pred CCcCCCCC
Confidence 99987654
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=182.67 Aligned_cols=163 Identities=28% Similarity=0.424 Sum_probs=120.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c-C-CeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V-P-AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~-~-~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..|++||+||||||||+|+|++.+..++++|+||+.++.+.. . + ..+.++||||+..+.+.+.++...|+.++..+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 479999999999999999999988889999999999988753 2 2 359999999999888776778888999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC-C
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT-N 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~-~ 244 (561)
++++|+|++..+ .......+..+.+++..+. .+ |+||+|+..... ....+..+...... .
T Consensus 240 vlL~VVD~s~~~-------~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e----l~~~l~~l~~~~~~~~ 308 (390)
T PRK12298 240 VLLHLIDIAPID-------GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE----AEERAKAIVEALGWEG 308 (390)
T ss_pred EEEEEeccCccc-------ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH----HHHHHHHHHHHhCCCC
Confidence 999999875110 1122333444444444432 22 899999874321 11223333333332 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+.++.|+..|+++|.+...+
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 68999999999999999999887543
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-19 Score=177.45 Aligned_cols=140 Identities=29% Similarity=0.355 Sum_probs=107.2
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|+|+|||.| ++++|+.+++ +..++|.+ +||+++...+.|.+++++.+..+ .+++.+.+.
T Consensus 22 aDvVl~V~Dar~p------~~~~~~~i~~----~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi 91 (276)
T TIGR03596 22 VDVVIEVLDARIP------LSSRNPMIDE----IRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGV 91 (276)
T ss_pred CCEEEEEEeCCCC------CCCCChhHHH----HHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccH
Confidence 4688999999999 9999999988 56678877 99999887899999987655443 666666555
Q ss_pred CCchhhhHh---------hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKTDEGEKK---------MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~~~~~~~---------~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
......... ...+......+++++|+||||||||+|+|++.. +.+++.||+|+..+. ......++++||
T Consensus 92 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~l~Dt 170 (276)
T TIGR03596 92 KKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW-IKLSDGLELLDT 170 (276)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE-EEeCCCEEEEEC
Confidence 442111111 011122456899999999999999999999988 889999999998764 455567999999
Q ss_pred CCcccCCc
Q psy17315 149 AGLVKGAA 156 (561)
Q Consensus 149 pG~~~~~~ 156 (561)
||+..+..
T Consensus 171 PG~~~~~~ 178 (276)
T TIGR03596 171 PGILWPKF 178 (276)
T ss_pred CCcccCCC
Confidence 99987653
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=177.34 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=119.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc--CCeEEEEeCCCcccCCcccccccccc---cccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV--PAFLNVVDIAGLVKGAAEGQGLGNAF---LSHI 169 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~--~~~i~l~DtpG~~~~~~~~~~~~~~~---l~~i 169 (561)
-+.|++|||+|+|||||||+||+....+.+..|.|.++++.. .. +..+.|-||-|++..-+ +.+..+| |+.+
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP--~~LV~AFksTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLP--HPLVEAFKSTLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCC--hHHHHHHHHHHHHh
Confidence 368999999999999999999999888899999999998863 22 35799999999997765 4566666 6778
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+||+++||||++.+ ....+++...+.|.++... +.||+|+..... .+..+....
T Consensus 270 ~~aDlllhVVDaSdp----------~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-------~~~~~~~~~-- 330 (411)
T COG2262 270 KEADLLLHVVDASDP----------EILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-------ILAELERGS-- 330 (411)
T ss_pred hcCCEEEEEeecCCh----------hHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-------hhhhhhhcC--
Confidence 999999999998742 4567777777778776443 999999873322 122222221
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...|.+|+.+|.|++.|...|.+..
T Consensus 331 ~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 331 PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 2689999999999999999999875
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=182.48 Aligned_cols=157 Identities=27% Similarity=0.417 Sum_probs=120.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--c-CCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--V-PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..|++||+||||||||+|+|++.+..++++||+|+.++.+.. . ...+.++||||+....+.+.+++..|+.++..+|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 489999999999999999999988888999999999987742 2 4579999999999877777788889999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+++||+|++..+ .....+.++.+.++|..+. .+ |+||+|+... ...+..+...+. ..
T Consensus 239 llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-------~e~l~~l~~~l~-~~ 303 (424)
T PRK12297 239 VIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-------EENLEEFKEKLG-PK 303 (424)
T ss_pred EEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-------HHHHHHHHHHhC-Cc
Confidence 999999875211 1234445555555555432 12 9999997421 122333333333 56
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+.++.|+..|++++.+..
T Consensus 304 i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 304 VFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-18 Score=169.08 Aligned_cols=85 Identities=28% Similarity=0.528 Sum_probs=71.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
+|+++|.||+|||||+|+|++....++++||+|.++..+. ..+..++++||||+.+......++..+++..++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999998877899999999887763 34567999999999876544445556677889999999
Q ss_pred EEEeccc
Q psy17315 176 FHLCKEK 182 (561)
Q Consensus 176 l~VvD~~ 182 (561)
++|+|++
T Consensus 82 l~V~D~t 88 (233)
T cd01896 82 LMVLDAT 88 (233)
T ss_pred EEEecCC
Confidence 9999875
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-18 Score=175.42 Aligned_cols=160 Identities=25% Similarity=0.388 Sum_probs=119.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cC-CeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VP-AFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~-~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
-..|++||+||||||||+|+|++....++++|++|+.++.+.. .+ ..+.++||||+++..+...++...|+.++..|
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 3579999999999999999999988889999999999987743 22 57999999999988777677888999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|++++|+|++..+ ....++.+..+.+++..+. .+ |+||+|+..... .....+.+.... ..
T Consensus 237 d~ll~VvD~s~~~-------~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~----~~~~~~~l~~~~-~~ 304 (329)
T TIGR02729 237 RVLLHLIDISPLD-------GRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE----LAELLKELKKAL-GK 304 (329)
T ss_pred CEEEEEEcCcccc-------ccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH----HHHHHHHHHHHc-CC
Confidence 9999999976321 1123444555555554432 12 899999974321 111222232222 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|++++.|++.|++++.+.
T Consensus 305 ~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 305 PVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred cEEEEEccCCcCHHHHHHHHHHH
Confidence 68999999999999999999764
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-18 Score=157.93 Aligned_cols=140 Identities=17% Similarity=0.148 Sum_probs=99.8
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc---ccccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK---ADSKKKM 76 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~---~~~~~~~ 76 (561)
..+++|.|+|||.| .+++++.+.+.......++|.+ +||++++....|+.++++..... .++..+.
T Consensus 8 ~aD~il~VvD~~~p------~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 8 SSDVVIQVLDARDP------MGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hCCEEEEEEECCCC------ccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 35789999999999 8888998887333222346766 99999988889999987654322 3444444
Q ss_pred CCCCchhhhHhhhh-cCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCc
Q psy17315 77 GPKKTDEGEKKMLL-GRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGL 151 (561)
Q Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~ 151 (561)
+............. .......+|+++|.||||||||+|+|.+.. +.+++.||+|++.+. ...+..++++||||+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~liDtPGi 157 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY-ITLMKRIYLIDCPGV 157 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE-EEcCCCEEEEECcCC
Confidence 43321111111110 112345789999999999999999999987 789999999998654 445567999999996
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=167.52 Aligned_cols=159 Identities=19% Similarity=0.120 Sum_probs=109.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-ccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~D 173 (561)
+|+++|.||||||||+|+|++.+ ..+++.|++|++...+.. ...++.++||||+...... ...+...+...++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999988 678999999998765532 3357999999999865321 1122333456789999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIV 250 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~is 250 (561)
++++|+|++..... . ..+.+.+.....+ |.||+|+..... .......+.........+++|
T Consensus 82 vvl~VvD~~~~~~~----------~--~~i~~~l~~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~v~~iS 145 (270)
T TIGR00436 82 LILFVVDSDQWNGD----------G--EFVLTKLQNLKRPVVLTRNKLDNKFKDK----LLPLIDKYAILEDFKDIVPIS 145 (270)
T ss_pred EEEEEEECCCCCch----------H--HHHHHHHHhcCCCEEEEEECeeCCCHHH----HHHHHHHHHhhcCCCceEEEe
Confidence 99999998631100 0 1222333333333 899999973211 112223333333344789999
Q ss_pred ccCCCCHHHHHHHHHhhccCCC
Q psy17315 251 GVPNVGKSTFFNVLTKRAFEDD 272 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~~~~~~ 272 (561)
|++|.|++.|++++.+..+...
T Consensus 146 A~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 146 ALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred cCCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999998865433
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=173.81 Aligned_cols=155 Identities=22% Similarity=0.216 Sum_probs=110.3
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc--ccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG--QGLGNAFLS 167 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~ 167 (561)
.+.+++++++|.||||||||+|+|++.+ +.|++.||||||..... ..+..+.++||+|+.+....- .|+ ++...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGI-eRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGI-ERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHH-HHHHH
Confidence 4578999999999999999999999999 89999999999987763 245579999999998544321 233 23467
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+.+||++++|+|++..- .......+. ......+ |.||+|+........ . ......
T Consensus 293 ~i~~ADlvL~v~D~~~~~----------~~~d~~~~~--~~~~~~~~i~v~NK~DL~~~~~~~~--------~-~~~~~~ 351 (454)
T COG0486 293 AIEEADLVLFVLDASQPL----------DKEDLALIE--LLPKKKPIIVVLNKADLVSKIELES--------E-KLANGD 351 (454)
T ss_pred HHHhCCEEEEEEeCCCCC----------chhhHHHHH--hcccCCCEEEEEechhcccccccch--------h-hccCCC
Confidence 789999999999986310 000011111 1111111 899999985433211 1 222344
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+.+|+++|.|++.|.++|.+...
T Consensus 352 ~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 352 AIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ceEEEEecCccCHHHHHHHHHHHHh
Confidence 6899999999999999999988643
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-17 Score=150.92 Aligned_cols=157 Identities=27% Similarity=0.398 Sum_probs=109.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCC-eEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPA-FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~-~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
.|+++|.||||||||+|+|++....++..|++|.++..+.. .+. .+.++||||+.........+...++..++.+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 48999999999999999999887778888999988766532 233 799999999865443333455666777788999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+++|+|++..+ ..+..+..+.+.+.... .+ |+||+|+.+.... ................
T Consensus 82 vi~v~D~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 82 LLHVIDLSGDD---------DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL----FELLKELLKELWGKPV 148 (170)
T ss_pred EEEEEecCCCC---------CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh----HHHHHHHHhhCCCCCE
Confidence 99999986431 12233333444443321 22 8999998754322 1223333333234568
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..+++++.+.
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 149 FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 999999999999999998763
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-17 Score=169.64 Aligned_cols=151 Identities=23% Similarity=0.287 Sum_probs=104.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCcccccccc---ccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGN---AFLSH 168 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~---~~l~~ 168 (561)
..++|+++|+||||||||+|+|++....+.+.||+|+++.+... .+..+.++||||++...+. .+.. ..+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~--~lie~f~~tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH--ELVAAFRATLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH--HHHHHHHHHHHH
Confidence 34899999999999999999999988778899999999876532 2357999999999653221 1222 23556
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+++||++++|+|++... ...+++.+.+.+..+. .+ |.||+|+... ..+..... .
T Consensus 266 ~~~ADlil~VvD~s~~~----------~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--------~~v~~~~~--~ 325 (351)
T TIGR03156 266 VREADLLLHVVDASDPD----------REEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--------PRIERLEE--G 325 (351)
T ss_pred HHhCCEEEEEEECCCCc----------hHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--------HhHHHHHh--C
Confidence 88999999999986432 1122222233343332 12 9999999732 11111111 1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.+|+++|.|+..|+++|.+.
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2357999999999999999998753
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-17 Score=147.62 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=95.6
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+.+|.|+|||.| .++.+..+.+.......++|.+ +||++++....|.+++++.+..+ .++..+.
T Consensus 12 aD~vl~ViD~~~p------~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~-- 83 (141)
T cd01857 12 SDIVVQIVDARNP------LLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKEN-- 83 (141)
T ss_pred CCEEEEEEEccCC------cccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--
Confidence 5678999999999 8888888877222222367776 99999888889999998877544 3443321
Q ss_pred CCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccC
Q psy17315 79 KKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~ 154 (561)
.+++++|.||||||||+|+|++.. ..++..||+|++... ...+..+.++||||+..|
T Consensus 84 ------------------~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 84 ------------------ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT-IFLTPTITLCDCPGLVFP 141 (141)
T ss_pred ------------------cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE-EEeCCCEEEEECCCcCCC
Confidence 169999999999999999999988 688899999998654 445557999999999753
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=165.35 Aligned_cols=239 Identities=16% Similarity=0.115 Sum_probs=154.2
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhh-cCCCCc-----cCCCChHHHHHHHHHHHhcCCC--c-ccccccc
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SDKPTW-----GDGDGPKAPKRRKQHLSDKLRP--K-ADSKKKM 76 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~--~-~~~~~~~ 76 (561)
++++|=|+|+|.= .+.....+.+ .+. .+||.+ +|--. .+.-...|-+.|.. + +++..+.
T Consensus 84 ADvilfvVD~~~G------it~~D~~ia~---~Lr~~~kpviLvvNK~D~~~---~e~~~~efyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREG------ITPADEEIAK---ILRRSKKPVILVVNKIDNLK---AEELAYEFYSLGFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCC------CCHHHHHHHH---HHHhcCCCEEEEEEcccCch---hhhhHHHHHhcCCCCceEeehhhcc
Confidence 4678999999986 5555555554 233 346776 55442 22333333343332 2 6777666
Q ss_pred CCCCchhhhHhhh----hcCC---CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEE
Q psy17315 77 GPKKTDEGEKKML----LGRV---GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVV 146 (561)
Q Consensus 77 ~~~~~~~~~~~~~----~~~~---~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~ 146 (561)
+............ .... ..++++++||.||||||||+|+|+|.. +-+++.||+|++...... .+..+.++
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~li 231 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLI 231 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEE
Confidence 6654211111111 0011 246899999999999999999999998 899999999999876543 36689999
Q ss_pred eCCCcccCCccccc----cccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccc
Q psy17315 147 DIAGLVKGAAEGQG----LGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKAD 219 (561)
Q Consensus 147 DtpG~~~~~~~~~~----~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D 219 (561)
||+|+.+...-.+. -..+.+.++..||++++|+|++..- ..+-..+-..+.+.++. +.||.|
T Consensus 232 DTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~-----------~~qD~~ia~~i~~~g~~~vIvvNKWD 300 (444)
T COG1160 232 DTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGI-----------SEQDLRIAGLIEEAGRGIVIVVNKWD 300 (444)
T ss_pred ECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCc-----------hHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 99999854422111 1123467889999999999986311 11111122223333333 899999
Q ss_pred ccCcCCCC-CccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 220 SKKKMGPK-KTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 220 ~~~~~~~~-~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+..... ......+...+...+..+.+.+||.+|.|+..|+..+.+-
T Consensus 301 l~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 301 LVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred cCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 98652221 1223345566667788899999999999999999998775
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-17 Score=173.51 Aligned_cols=153 Identities=28% Similarity=0.345 Sum_probs=122.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccC--CccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKG--AAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~--~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|-||||||||||+|||....++|+||+|.+..++. ..+.++.++|+||..+- .+.++.+...|+.. .++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~-~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE-GKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc-CCC
Confidence 56999999999999999999999999999999999988874 34557999999999863 34455555566532 567
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|+|+.|+|++. +.+++- +.-|+.+++.+ +.|++|..++.+... +.+.+++.++. +.+.+
T Consensus 83 D~ivnVvDAtn------------LeRnLy-ltlQLlE~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGv----PVv~t 144 (653)
T COG0370 83 DLIVNVVDATN------------LERNLY-LTLQLLELGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGV----PVVPT 144 (653)
T ss_pred CEEEEEcccch------------HHHHHH-HHHHHHHcCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCC----CEEEE
Confidence 99999998872 223332 33467777777 899999999988866 56667777776 99999
Q ss_pred EccCCCCHHHHHHHHHhhc
Q psy17315 250 VGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~ 268 (561)
|+.+|.|.+.++..+.+..
T Consensus 145 vA~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 145 VAKRGEGLEELKRAIIELA 163 (653)
T ss_pred EeecCCCHHHHHHHHHHhc
Confidence 9999999999999998764
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=146.61 Aligned_cols=137 Identities=23% Similarity=0.314 Sum_probs=100.4
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--cccccccCC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKKKMGP 78 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~~~~~ 78 (561)
+++|.|+|||.| .++.+..++. ......++|.+ +||++++....|+.+++.... .+ .+++.+.+.
T Consensus 1 Dvvl~VvD~~~p------~~~~~~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDP------LGTRSPDIER-VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCC------ccccCHHHHH-HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcCh
Confidence 468999999999 9999888872 11223456776 999998888899877765433 22 677777666
Q ss_pred CCchhhhHh---------hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKTDEGEKK---------MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~~~~~~~---------~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
......... ..........+++++|.||||||||+|+|++.. ..+++.||+|++... ...+..++++||
T Consensus 74 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~liDt 152 (155)
T cd01849 74 EKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE-VKLDNKIKLLDT 152 (155)
T ss_pred hhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE-EEecCCEEEEEC
Confidence 553221100 011113456889999999999999999999987 788999999999766 445567999999
Q ss_pred CCc
Q psy17315 149 AGL 151 (561)
Q Consensus 149 pG~ 151 (561)
||+
T Consensus 153 PG~ 155 (155)
T cd01849 153 PGI 155 (155)
T ss_pred CCC
Confidence 996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-16 Score=167.52 Aligned_cols=152 Identities=23% Similarity=0.324 Sum_probs=103.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c-C-CeEEEEeCCCcccCCcccccccccc---ccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V-P-AFLNVVDIAGLVKGAAEGQGLGNAF---LSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~-~-~~i~l~DtpG~~~~~~~~~~~~~~~---l~~i~ 170 (561)
++|+++|+||||||||||+|++....+++.||+|+++..... . + ..+.++||||++...+ ..+..+| +..++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp--~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLP--HDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCC--HHHHHHHHHHHHHhh
Confidence 589999999999999999999988668899999999877522 2 2 3789999999965322 1222223 56678
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+||++++|+|++... ...++..+.+.+.++. .+ |.||+|+.+... ...... .....
T Consensus 276 ~ADlIL~VvDaS~~~----------~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~------~~~~~~--~~~~~ 337 (426)
T PRK11058 276 QATLLLHVVDAADVR----------VQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE------PRIDRD--EENKP 337 (426)
T ss_pred cCCEEEEEEeCCCcc----------HHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh------HHHHHH--hcCCC
Confidence 999999999986322 2233333333444432 22 999999963211 011111 11112
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|++.|++++.+..
T Consensus 338 ~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 338 IRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHh
Confidence 248899999999999999998874
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-16 Score=156.57 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=105.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCccc-CCcccccccccc---ccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVK-GAAEGQGLGNAF---LSH 168 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~-~~~~~~~~~~~~---l~~ 168 (561)
...++.|.|+||||||||+++||+.+..+++|||||+..+.|.. .+..++++||||+.. |..+-..+..+. +.+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999988843 345899999999984 322211222222 445
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+. ++|+|++|++ ..+.+.+..++.++.+.-.....+ |.||+|....... ..............
T Consensus 247 l~--~~IlF~~D~S-------e~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~-----~~~~~~~~~~~~~~ 312 (346)
T COG1084 247 LA--GVILFLFDPS-------ETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKL-----EEIEASVLEEGGEE 312 (346)
T ss_pred hc--CeEEEEEcCc-------cccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHH-----HHHHHHHHhhcccc
Confidence 54 8899999986 234456677777766655544433 9999998832211 11111112212222
Q ss_pred EEEEEccCCCCHHHHHHHHHh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~ 266 (561)
...+++..++|.+.+...+.+
T Consensus 313 ~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 313 PLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred ccceeeeehhhHHHHHHHHHH
Confidence 355666677777665555544
|
|
| >cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-17 Score=130.00 Aligned_cols=57 Identities=33% Similarity=0.412 Sum_probs=53.3
Q ss_pred CCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEe
Q psy17315 475 QDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 549 (561)
Q Consensus 475 ~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~ 549 (561)
+.+.++|++++|+|++++|+.||+||.++|++|+||+ +|++|++|+|+|||||+|.+
T Consensus 20 ~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 20 NVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred CccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECCCEEecCCCEEEEEC
Confidence 3466999999999999999999999999999999997 59999999999999999975
|
The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=160.05 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=107.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-ccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~ 170 (561)
...+|+++|.||||||||+|+|++.. ..+++.|++|++...+. ..+.++.+|||||+..+... ...+....+.+++
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 34689999999999999999999988 66788999998865542 23457999999999754321 1223333445678
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHh-hhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLL-GRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~-~~~~~~~ 245 (561)
.||++++|+|+.. .+...+ .+.+.+.....+ |+||+|+.+. ....+.... .......
T Consensus 131 ~aDvil~VvD~~~------------s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~------~~~~~~~~l~~~~~~~~ 192 (339)
T PRK15494 131 SADLVLLIIDSLK------------SFDDITHNILDKLRSLNIVPIFLLNKIDIESK------YLNDIKAFLTENHPDSL 192 (339)
T ss_pred hCCEEEEEEECCC------------CCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc------cHHHHHHHHHhcCCCcE
Confidence 9999999998642 011111 112222222222 8999998632 112222222 2223456
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDD 272 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~ 272 (561)
.+++||++|.|++.|+++|.+..++..
T Consensus 193 i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 193 LFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred EEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 899999999999999999999875533
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-16 Score=155.37 Aligned_cols=156 Identities=22% Similarity=0.299 Sum_probs=126.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCcccccccccc---cccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAF---LSHI 169 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~---l~~i 169 (561)
...|++|||+|+|||||+|+||+......+.-|.|.|++.. ...+..+.+.||-|+++..+ ..+..+| ++++
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP--~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP--IQLVAAFQATLEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCc--HHHHHHHHHHHHHH
Confidence 46899999999999999999997777788889999998765 22345789999999998766 3556555 7788
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
..+|+|+||+|.+.++...+......+.+.++.-...+..-+..|.||+|..+..-..+ ....+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------------~n~~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------------KNLDVGI 321 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------------cCCcccc
Confidence 99999999999998887777777778888887766666666667999999986544432 2347999
Q ss_pred EccCCCCHHHHHHHHHhh
Q psy17315 250 VGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~ 267 (561)
|+.+|.|...+.+.+-..
T Consensus 322 saltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETK 339 (410)
T ss_pred ccccCccHHHHHHHHHHH
Confidence 999999999999998765
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-16 Score=165.92 Aligned_cols=240 Identities=18% Similarity=0.160 Sum_probs=142.5
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--cccccccC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKKKMG 77 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~~~~ 77 (561)
.+.+|-|+|++.+ .+.....+.+... ..++|.+ +|+.+.+... ..+...+. .+ +++..+.+
T Consensus 79 ad~vl~vvD~~~~------~~~~d~~i~~~l~--~~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 79 ADVILFVVDGREG------LTPEDEEIAKWLR--KSGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred CCEEEEEEeCCCC------CCHHHHHHHHHHH--HhCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeCCcCCC
Confidence 4678999999998 6555444444111 1245665 8987654321 22333343 22 66666665
Q ss_pred CCCchhhhHhhh------hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeC
Q psy17315 78 PKKTDEGEKKML------LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDI 148 (561)
Q Consensus 78 ~~~~~~~~~~~~------~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~Dt 148 (561)
............ .......++++++|.||+|||||+|+|++.. ..+++.||+|++..... ..+..+.++||
T Consensus 148 v~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT 227 (429)
T TIGR03594 148 IGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDT 227 (429)
T ss_pred hHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEEC
Confidence 543211110000 0112235799999999999999999999987 67889999999875432 23457999999
Q ss_pred CCcccCCccccccc----cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccccc
Q psy17315 149 AGLVKGAAEGQGLG----NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSK 221 (561)
Q Consensus 149 pG~~~~~~~~~~~~----~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~ 221 (561)
||+.........+. .+.+.+++.||++++|+|++.... ..... +...+.....+ |+||+|+.
T Consensus 228 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~----------~~~~~-~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 228 AGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT----------EQDLR-IAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc----------HHHHH-HHHHHHHcCCcEEEEEECcccC
Confidence 99975543221111 122456899999999999863110 11111 11222222233 89999997
Q ss_pred CcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 222 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 222 ~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+....-......+..........+.+.+||++|.|+..+++++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 297 KDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred CCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 2100000011112222222345678999999999999999998775
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-15 Score=146.42 Aligned_cols=170 Identities=18% Similarity=0.109 Sum_probs=106.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccccc--CCeEEEEeCCCcccCCcc-ccccc----ccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKV--PAFLNVVDIAGLVKGAAE-GQGLG----NAF 165 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~--~~~i~l~DtpG~~~~~~~-~~~~~----~~~ 165 (561)
.+.+.|++||.||||||||.|.+.|.+ +.++..+.||++...+... ..++.|+||||++..... ...+. ...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 345789999999999999999999999 8899999999998887543 358999999999975532 11222 233
Q ss_pred ccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCC--------CCccHHH-HHH
Q psy17315 166 LSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGP--------KKTDEGE-KKM 236 (561)
Q Consensus 166 l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~--------~~~~~~~-l~~ 236 (561)
..++..||+++.|+|++..... -...+ ++.+.......-.-++||+|..+.+.. +...... .-+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~----l~p~v---l~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTP----LHPRV---LHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCc----cChHH---HHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 5667889999999998721100 00000 011111110000015666666654321 0000000 001
Q ss_pred Hhhhc---C-------------CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 237 LLGRV---G-------------TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 237 l~~~~---~-------------~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
+.+.+ + ....+++||++|.|+.+|.++|....+.
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 11111 1 2247999999999999999999988643
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-15 Score=152.25 Aligned_cols=161 Identities=21% Similarity=0.187 Sum_probs=109.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~ 172 (561)
..|+++|.||||||||+|+|+|.. +.+++.|++|+....+.. ...++.++||||+..+... +..+.......+..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 459999999999999999999988 678899999988765533 2358999999999765421 122223345567899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++|+|++.. .......+.+.+.....+ |+||+|+.... ......+..+.........+.+
T Consensus 86 D~il~vvd~~~~-----------~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~---~~l~~~~~~l~~~~~~~~i~~i 151 (292)
T PRK00089 86 DLVLFVVDADEK-----------IGPGDEFILEKLKKVKTPVILVLNKIDLVKDK---EELLPLLEELSELMDFAEIVPI 151 (292)
T ss_pred CEEEEEEeCCCC-----------CChhHHHHHHHHhhcCCCEEEEEECCcCCCCH---HHHHHHHHHHHhhCCCCeEEEe
Confidence 999999987630 001111222223222223 89999997321 0112233444444455678999
Q ss_pred EccCCCCHHHHHHHHHhhccCC
Q psy17315 250 VGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~~~ 271 (561)
|+++|.|...|++++.+..+..
T Consensus 152 SA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999886543
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-15 Score=161.88 Aligned_cols=240 Identities=16% Similarity=0.143 Sum_probs=141.4
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCC-c--ccccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRP-K--ADSKKKM 76 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~-~--~~~~~~~ 76 (561)
+.+++|-|+|++.+ .+.....+.+.. -..++|.+ +|+.+.+. .. ..+...+.. + +++..+.
T Consensus 80 ~ad~il~vvd~~~~------~~~~~~~~~~~l--~~~~~piilv~NK~D~~~~~~--~~-~~~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAG------LTPADEEIAKIL--RKSNKPVILVVNKVDGPDEEA--DA-YEFYSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCC------CCHHHHHHHHHH--HHcCCcEEEEEECccCccchh--hH-HHHHhcCCCCCEEEEeeCCC
Confidence 45778999999998 555443333311 11245555 89765321 11 222233322 2 6666665
Q ss_pred CCCCchhhhHh-----hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeC
Q psy17315 77 GPKKTDEGEKK-----MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDI 148 (561)
Q Consensus 77 ~~~~~~~~~~~-----~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~Dt 148 (561)
+....-..... .........++|+++|.||+|||||+|+|++.. ..+++.||+|++..... ..+..+.++||
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT 228 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDT 228 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEEC
Confidence 55431110000 000002346899999999999999999999887 77899999999875432 23457999999
Q ss_pred CCcccCCccccccc----cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccccc
Q psy17315 149 AGLVKGAAEGQGLG----NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSK 221 (561)
Q Consensus 149 pG~~~~~~~~~~~~----~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~ 221 (561)
||+.........+. ...+.+++.+|++++|+|++.... .... .+...+.+...+ ++||+|+.
T Consensus 229 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~----------~~~~-~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 229 AGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT----------EQDL-RIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC----------HHHH-HHHHHHHHcCCcEEEEEECccCC
Confidence 99976543221111 223457889999999999863210 0111 111222222333 89999997
Q ss_pred CcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 222 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 222 ~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..... ......+..........+.+.+||++|.|+..+++.+.+.
T Consensus 298 ~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 298 DEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred CHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 22110 0011112222233345688999999999999999988764
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-15 Score=138.60 Aligned_cols=158 Identities=31% Similarity=0.473 Sum_probs=103.0
Q ss_pred EEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--cc-CCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KV-PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 101 ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
++|.+|||||||+|+|++....++++|++|.++..+. .. +..+.++||||+.......+.+...++..++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5799999999999999998777788999998887653 23 56799999999975444334455566777889999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHH----------hcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRD----------LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----------~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|+|++..... ......+....+...+.. ...+ |+||+|+........ ............
T Consensus 81 v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~----~~~~~~~~~~~~ 152 (176)
T cd01881 81 VVDASEDDDI----GGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEE----ELVRELALEEGA 152 (176)
T ss_pred EEeccCCccc----cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHH----HHHHHHhcCCCC
Confidence 9998643100 000111111111112211 1222 899999974322111 001122223456
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+|+.++.|+..+++++..
T Consensus 153 ~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 153 EVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred CEEEEehhhhcCHHHHHHHHHh
Confidence 6899999999999999998865
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-15 Score=160.72 Aligned_cols=240 Identities=20% Similarity=0.156 Sum_probs=139.1
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC--Cc-ccccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR--PK-ADSKKKM 76 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~--~~-~~~~~~~ 76 (561)
+.+.+|=|+|++.+ .+.....+.+ .....++|.+ +|+..... ...+.+ ..+. .+ +++..+.
T Consensus 117 ~aD~il~VvD~~~~------~s~~~~~i~~--~l~~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 117 TADAVLFVVDATVG------ATATDEAVAR--VLRRSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGR 185 (472)
T ss_pred hCCEEEEEEECCCC------CCHHHHHHHH--HHHHcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCC
Confidence 46788999999988 5433333322 0111345665 99865321 111111 2222 12 7777776
Q ss_pred CCCCch-hhhHhhh-----hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEe
Q psy17315 77 GPKKTD-EGEKKML-----LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVD 147 (561)
Q Consensus 77 ~~~~~~-~~~~~~~-----~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~D 147 (561)
+....- ....... .......++|+++|.||||||||+|+|++.. ..+++.||+|++..... ..+..+.++|
T Consensus 186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~D 265 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVD 265 (472)
T ss_pred CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEE
Confidence 665521 1110000 0011345899999999999999999999987 57889999999876542 2345689999
Q ss_pred CCCcccCCcccc--cccc--ccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccc
Q psy17315 148 IAGLVKGAAEGQ--GLGN--AFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADS 220 (561)
Q Consensus 148 tpG~~~~~~~~~--~~~~--~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~ 220 (561)
|||+........ .... ....+++.||++++|+|++.... ...+..+ ..+.....+ |+||+|+
T Consensus 266 TaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s----------~~~~~~~-~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 266 TAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS----------EQDQRVL-SMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred CCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC----------HHHHHHH-HHHHHcCCCEEEEEECccc
Confidence 999864322111 1000 11235789999999999863210 1111111 122222333 8999999
Q ss_pred cCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 221 KKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 221 ~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.... ......+..........+.+.+||++|.|+..+++.+.+.
T Consensus 335 ~~~~~~-~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 335 VDEDRR-YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred CChhHH-HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 742110 0001112222222234577999999999999999999875
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-15 Score=158.09 Aligned_cols=150 Identities=22% Similarity=0.195 Sum_probs=103.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccc-cccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGL-GNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~i 169 (561)
..+++|+++|+||||||||+|+|++.. ..+++.||+|++..... ..+..+.++||||+..+...-+.. ....+..+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 456899999999999999999999987 57889999999876542 234578999999986432211111 11235678
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+++|++++|+|++.... ......+.. ....+ |+||+|+.+..... .......
T Consensus 293 ~~aD~il~VvD~s~~~s----------~~~~~~l~~---~~~~piiiV~NK~DL~~~~~~~------------~~~~~~~ 347 (449)
T PRK05291 293 EEADLVLLVLDASEPLT----------EEDDEILEE---LKDKPVIVVLNKADLTGEIDLE------------EENGKPV 347 (449)
T ss_pred HhCCEEEEEecCCCCCC----------hhHHHHHHh---cCCCCcEEEEEhhhccccchhh------------hccCCce
Confidence 99999999999863221 111122211 11122 99999997432110 1223467
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.|++++.+..
T Consensus 348 i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 348 IRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred EEEEeeCCCCHHHHHHHHHHHH
Confidence 9999999999999999998874
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-15 Score=138.00 Aligned_cols=136 Identities=27% Similarity=0.386 Sum_probs=98.1
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|.|+||+.| .++.+..+.+ ...++|.+ +||.+++....|+++++..+..+ .++..+.+.
T Consensus 20 aD~il~v~D~~~~------~~~~~~~i~~----~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi 89 (171)
T cd01856 20 VDLVIEVRDARIP------LSSRNPLLEK----ILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGV 89 (171)
T ss_pred CCEEEEEeeccCc------cCcCChhhHh----HhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccH
Confidence 4678999999999 7777766655 44566666 99998877778998887765544 666665554
Q ss_pred CCchhhhHhh--------hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCC
Q psy17315 79 KKTDEGEKKM--------LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIA 149 (561)
Q Consensus 79 ~~~~~~~~~~--------~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dtp 149 (561)
.......... .........+++++|.||||||||+|+|++.. ..+++.||+|+..+. ...+..+.++|||
T Consensus 90 ~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~-~~~~~~~~~iDtp 168 (171)
T cd01856 90 KKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW-IKISPGIYLLDTP 168 (171)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE-EEecCCEEEEECC
Confidence 4321111110 11123345789999999999999999999987 688899999998765 3334679999999
Q ss_pred Ccc
Q psy17315 150 GLV 152 (561)
Q Consensus 150 G~~ 152 (561)
|+.
T Consensus 169 G~~ 171 (171)
T cd01856 169 GIL 171 (171)
T ss_pred CCC
Confidence 984
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=164.28 Aligned_cols=236 Identities=18% Similarity=0.156 Sum_probs=139.2
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC--Cc-cccccccC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR--PK-ADSKKKMG 77 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~--~~-~~~~~~~~ 77 (561)
.+.+|=|+|++.+ +......+.+ ..-..++|.+ +|+...... ...+...+. .. +++..+.+
T Consensus 355 aD~iL~VvDa~~~------~~~~d~~i~~--~Lr~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 355 ADAVVFVVDGQVG------LTSTDERIVR--MLRRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred CCEEEEEEECCCC------CCHHHHHHHH--HHHhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECCCCCC
Confidence 3577889999987 4433333322 1112356666 898654221 111212222 12 77777777
Q ss_pred CCCchh-hhHhhhhc-------CCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEE
Q psy17315 78 PKKTDE-GEKKMLLG-------RVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVV 146 (561)
Q Consensus 78 ~~~~~~-~~~~~~~~-------~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~ 146 (561)
....-. ........ .....++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.++
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~li 503 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFI 503 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEE
Confidence 655211 11000000 01234799999999999999999999987 56889999999876542 344578899
Q ss_pred eCCCcccCCcccccc--c--cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccc
Q psy17315 147 DIAGLVKGAAEGQGL--G--NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKAD 219 (561)
Q Consensus 147 DtpG~~~~~~~~~~~--~--~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D 219 (561)
||||+........+. . .....+++.+|++++|+|++.... ...+..+ ..+.+...+ |+||+|
T Consensus 504 DTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s----------~~~~~i~-~~~~~~~~piIiV~NK~D 572 (712)
T PRK09518 504 DTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS----------EQDLKVM-SMAVDAGRALVLVFNKWD 572 (712)
T ss_pred ECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC----------HHHHHHH-HHHHHcCCCEEEEEEchh
Confidence 999987533221110 0 112345789999999999863210 1111111 122222333 899999
Q ss_pred ccCcCCCCCccHHHHHH-Hh---hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 220 SKKKMGPKKTDEGEKKM-LL---GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 220 ~~~~~~~~~~~~~~l~~-l~---~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+... ...+.. +. ......+.+.+||++|.|+..|++.+.+..
T Consensus 573 L~~~~~-----~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 573 LMDEFR-----RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred cCChhH-----HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 974211 112222 11 222345679999999999999999998863
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-15 Score=152.28 Aligned_cols=172 Identities=23% Similarity=0.256 Sum_probs=106.6
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccc---cccccc
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEG---QGLGNA 164 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~---~~~~~~ 164 (561)
.+...+++|+|+|.||||||||+|+|++.+ ..|++.||+|+|...... .+..++|+||+|+.+..... .++. +
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~-r 341 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIE-R 341 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHH-H
Confidence 344578999999999999999999999998 889999999999876532 45579999999998733221 1222 3
Q ss_pred cccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHH------Hhcch--hhccccccCc-CCCCCccHHHHH
Q psy17315 165 FLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIR------DLRRS--VDAKADSKKK-MGPKKTDEGEKK 235 (561)
Q Consensus 165 ~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~~--v~NK~D~~~~-~~~~~~~~~~l~ 235 (561)
....++.||+|++|+|+-.-+.. ......+.+.....-+. +..+. +.||+|.... ..........+.
T Consensus 342 A~k~~~~advi~~vvda~~~~t~----sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~ 417 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTE----SDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS 417 (531)
T ss_pred HHHHHhhcCEEEEEecccccccc----cchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc
Confidence 34567899999999998210000 00000011110000000 00111 7899998754 111111111111
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
. ...-.......+|+.++.|.+.|.+.+.+..
T Consensus 418 ~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 418 A-EGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred c-ccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 1 1111233445599999999999999999874
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=133.49 Aligned_cols=158 Identities=20% Similarity=0.162 Sum_probs=97.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccc-ccccccccc-cccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQ-GLGNAFLSH-ISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~-i~~~ 172 (561)
++|+++|.||||||||+|+|++....++++|++|.+...+.. ....+.++||||+........ .+....+.. ...+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 368999999999999999999988667778898887765422 235799999999853221111 010011111 1235
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|++.... ... .....+.+.+... ..+ |+||+|+....... ...... .......+
T Consensus 81 d~~l~v~d~~~~~~-------~~~-~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~-----~~~~~~-~~~~~~~~ 146 (168)
T cd01897 81 AAVLFLFDPSETCG-------YSL-EEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS-----EIEEEE-ELEGEEVL 146 (168)
T ss_pred CcEEEEEeCCcccc-------cch-HHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH-----HHHHhh-hhccCceE
Confidence 89999998763210 000 1111122223222 122 99999997433221 112222 22456789
Q ss_pred EEEccCCCCHHHHHHHHHhhc
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+|+++|.|+..+++++.+..
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 147 KISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred EEEecccCCHHHHHHHHHHHh
Confidence 999999999999999998753
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-16 Score=152.76 Aligned_cols=161 Identities=24% Similarity=0.285 Sum_probs=115.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
-.+++.|+||+|||||+|.|.+. ..+.+|+.+.|| +.++++.. .+.+++|+||||+.+.-..+.+.+.+...+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~--KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl- 83 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ--KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL- 83 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC--ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh-
Confidence 35899999999999999999999 778999988887 55566543 45789999999998876666666543333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++|+++++++... .|...|..+++.+.. ...|+++++||+ |...++
T Consensus 84 --------------------~dvDlilfvvd~~~----------~~~~~d~~il~~lk~-~~~pvil~iNKI--D~~~~~ 130 (298)
T COG1159 84 --------------------KDVDLILFVVDADE----------GWGPGDEFILEQLKK-TKTPVILVVNKI--DKVKPK 130 (298)
T ss_pred --------------------ccCcEEEEEEeccc----------cCCccHHHHHHHHhh-cCCCeEEEEEcc--ccCCcH
Confidence 33377776655422 366677777776654 467999999999 444322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.. +..+.+.+....++..++|+||+.|.|+..|.+....
T Consensus 131 ~~-l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~ 169 (298)
T COG1159 131 TV-LLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKE 169 (298)
T ss_pred HH-HHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHH
Confidence 21 2344455555556889999999999999999765544
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-14 Score=136.08 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=103.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCc-c--cccc---ccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA-E--GQGL---GNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~-~--~~~~---~~~~l 166 (561)
....|+++|++|||||||||+|++++ +.+|..||.|+..+. ......+.++|.||+.-..- . -+.+ ...++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf-f~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF-FEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE-EEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999977 999999999999876 44455699999999963221 0 1111 12223
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHh---h
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLL---G 239 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~---~ 239 (561)
..=.+-..+++++|++. .....|. +-+.+.+...+ ++||+|+.+..+. .+.+..+. .
T Consensus 102 ~~R~~L~~vvlliD~r~------------~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~----~k~l~~v~~~l~ 165 (200)
T COG0218 102 EKRANLKGVVLLIDARH------------PPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER----NKQLNKVAEELK 165 (200)
T ss_pred hhchhheEEEEEEECCC------------CCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH----HHHHHHHHHHhc
Confidence 22223466778887752 2233332 33445555554 8999999954332 12222332 2
Q ss_pred hcCCCc--EEEEEccCCCCHHHHHHHHHhh
Q psy17315 240 RVGTNL--KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 240 ~~~~~~--~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+. .+..|..++.|++.|.+.|.+.
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHH
Confidence 223333 8999999999999999998775
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-16 Score=159.06 Aligned_cols=309 Identities=17% Similarity=0.163 Sum_probs=163.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc------------------
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE------------------ 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~------------------ 157 (561)
.+++.|.||+||++|.|. ...+.+.+.+|+|+|...+. +.|..+...||.|+.-....
T Consensus 77 s~~v~~~~~~~~~~l~~~--~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~avv~~~l~a~~~sg~~~i 154 (531)
T KOG1191|consen 77 SVMVPKRRNAGLRALYNP--EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSSAVVVGVLTALGASGIPGI 154 (531)
T ss_pred ccccCCCCccccccccCh--hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEEEecCccchhhHHHHhhhccCCCc
Confidence 478899999999999998 22255677889999987663 45667888899888522111
Q ss_pred -----cccccccccc---cc----ccCCEEEEEecccccchh-hhccchhh-HhhhHHHHHHHHHHhcchhhccccccCc
Q psy17315 158 -----GQGLGNAFLS---HI----SACDAIFHLCKEKLRNIF-FISLNTIT-IWRNLKLLETRIRDLRRSVDAKADSKKK 223 (561)
Q Consensus 158 -----~~~~~~~~l~---~i----~~~D~il~VvD~~~~~~~-~~~~~~~~-~~~~~~~l~~~l~~~~~~v~NK~D~~~~ 223 (561)
++....+|++ .+ ...|+|....++...... ........ .+. +...+-+....+.--+|..+.
T Consensus 155 r~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~~----~r~~lIe~~a~l~a~idf~e~ 230 (531)
T KOG1191|consen 155 RLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCFG----WRKILIEALAGLEARIDFEEE 230 (531)
T ss_pred cccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhhh----HHHHHHHHHhccceeechhhc
Confidence 1111111111 11 112333333322100000 00000000 000 112222222222233444333
Q ss_pred CCCC-----CccHHHHH---H---------HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc
Q psy17315 224 MGPK-----KTDEGEKK---M---------LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR 285 (561)
Q Consensus 224 ~~~~-----~~~~~~l~---~---------l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~ 285 (561)
..+. ......++ + .......+..|++.|+||+|||+|+|+|.+. +.++|++++||| |.++
T Consensus 231 ~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~--drsIVSpv~GTTRDaie 308 (531)
T KOG1191|consen 231 RPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSRE--DRSIVSPVPGTTRDAIE 308 (531)
T ss_pred CchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcC--CceEeCCCCCcchhhhe
Confidence 3221 11111111 1 1233467899999999999999999999999 889999999998 4443
Q ss_pred -chhhhhHhhhcccHHHHHH-HHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcc
Q psy17315 286 -DIEIINEELRLKDVEHIEK-EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHA 363 (561)
Q Consensus 286 -~~~~~~~el~l~Dt~Gi~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~ 363 (561)
.+++.+..+.|.||+|+++ .-+.+++.....+++.+.+ +|++..|++..+.
T Consensus 309 a~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~---------------------advi~~vvda~~~------ 361 (531)
T KOG1191|consen 309 AQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER---------------------ADVILLVVDAEES------ 361 (531)
T ss_pred eEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh---------------------cCEEEEEeccccc------
Confidence 3566678899999999987 4444555554443333222 2555544443221
Q ss_pred cCCCCCHHHHH---HHHhhh--------hccCCceEEEecCChhhhhhhccchHHHHHHHHHh-cCC-CCeEEeechhhh
Q psy17315 364 RYGDWSNADIE---HLNKLN--------LLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA-NDP-GATIIPFSGVFE 430 (561)
Q Consensus 364 ~~~~~~~~e~~---~l~~~~--------~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~-~~~-~~~vi~iSA~~~ 430 (561)
+..++.. .|.... ....+|+++++||+|. ...-.........+... ..+ +..++.+||+++
T Consensus 362 ----~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~--~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tk 435 (531)
T KOG1191|consen 362 ----DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL--VSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTK 435 (531)
T ss_pred ----ccccchHHHHHHHHhccceEEEeccccccceEEEechhhc--cCccccccCCceeccccccCcccceEEEeeechh
Confidence 1111211 121111 0123899999999954 32101110000011111 111 234555999999
Q ss_pred hhhCCCCHHHHHHHHHH
Q psy17315 431 HQLVDMPDDERQRYLDE 447 (561)
Q Consensus 431 ~gl~~L~~~~~~~~~~~ 447 (561)
+|+.+|.......+...
T Consensus 436 eg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 436 EGCERLSTALLNIVERL 452 (531)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 99999988777666544
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=161.84 Aligned_cols=153 Identities=20% Similarity=0.304 Sum_probs=106.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc------cccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE------GQGLGNAFLS 167 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~------~~~~~~~~l~ 167 (561)
.++|+++|.||||||||+|+|+|....++++||+|.+...+.. .+..+.++||||+.+.... ++.+...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l- 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI- 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH-
Confidence 3589999999999999999999998889999999998766532 3457999999999754321 111111111
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
....+|++++|+|++..+ +.+. +..++.+...+ +.||+|..++.+... ..+.+....+ .
T Consensus 82 ~~~~aD~vI~VvDat~le------------r~l~-l~~ql~e~giPvIvVlNK~Dl~~~~~i~i----d~~~L~~~LG-~ 143 (772)
T PRK09554 82 LSGDADLLINVVDASNLE------------RNLY-LTLQLLELGIPCIVALNMLDIAEKQNIRI----DIDALSARLG-C 143 (772)
T ss_pred hccCCCEEEEEecCCcch------------hhHH-HHHHHHHcCCCEEEEEEchhhhhccCcHH----HHHHHHHHhC-C
Confidence 125789999999986311 1222 33455555555 999999986554421 2233322222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+.+|.|++.+.+.+.+.
T Consensus 144 pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 144 PVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred CEEEEEeecCCCHHHHHHHHHHh
Confidence 78999999999999999999765
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-14 Score=134.64 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=96.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCC--cc--cccccc---ccc-
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGA--AE--GQGLGN---AFL- 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~--~~--~~~~~~---~~l- 166 (561)
...+|+++|.+|||||||+|+|++....++..||+|.+..... . ..+.+|||||+.... +. .+.+.. .++
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~-~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD-W-GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe-e-cceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998877888999998765422 2 269999999973211 10 011111 112
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
..+..+|++++|+|++.................-..+...+.....+ |+||+|+.+.. ......+......
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~------~~~~~~~~~~~~~ 159 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR------DEVLDEIAERLGL 159 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH------HHHHHHHHHHhcC
Confidence 23456789999998752110000000000000000111222222223 99999986432 1122222222221
Q ss_pred --------CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 --------NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 --------~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+||++| |++.++++|.+..
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 25799999999 9999999998863
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-15 Score=156.92 Aligned_cols=163 Identities=26% Similarity=0.318 Sum_probs=118.6
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
.+.+.++.+.|+||+|||||+|+|.++ +.++|+.++||| |.++ ++...+..+.+.||+|+++.-+.+++...++.+
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~--d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGR--DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcC--CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 378899999999999999999999999 899999999998 4443 356677899999999999888888888776555
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
+.+.++ |.++.+++.. ..++.++...+. .....+|+++|.||. |+
T Consensus 292 ~~i~~A---------------------DlvL~v~D~~----------~~~~~~d~~~~~--~~~~~~~~i~v~NK~--DL 336 (454)
T COG0486 292 KAIEEA---------------------DLVLFVLDAS----------QPLDKEDLALIE--LLPKKKPIIVVLNKA--DL 336 (454)
T ss_pred HHHHhC---------------------CEEEEEEeCC----------CCCchhhHHHHH--hcccCCCEEEEEech--hc
Confidence 443433 6655554421 124556666665 222579999999999 55
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
... .....+ ++ .++.+++.+||+++.||+.|.++..+.|...
T Consensus 337 ~~~--~~~~~~-~~----~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 337 VSK--IELESE-KL----ANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccc--cccchh-hc----cCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 431 112222 11 1245799999999999999988777766544
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-14 Score=136.31 Aligned_cols=151 Identities=22% Similarity=0.272 Sum_probs=99.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cC-CeEEEEeCCCcccCCcccccccc---cccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VP-AFLNVVDIAGLVKGAAEGQGLGN---AFLSHI 169 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~-~~i~l~DtpG~~~~~~~~~~~~~---~~l~~i 169 (561)
-++|+++|.||||||||+|+|++....+.+.++.|.++..... .+ ..+.++||||+....+. .+.. ..+..+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTLEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCH--HHHHHHHHHHHHH
Confidence 3689999999999999999999987666677788877655421 12 27999999999643221 1111 123446
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
..+|++++|+|++.... ......+.+.+..+. .+ |+||+|+...... ... .....
T Consensus 119 ~~~d~ii~v~D~~~~~~----------~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~--------~~~-~~~~~ 179 (204)
T cd01878 119 AEADLLLHVVDASDPDY----------EEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL--------EER-LEAGR 179 (204)
T ss_pred hcCCeEEEEEECCCCCh----------hhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH--------HHH-hhcCC
Confidence 78999999998863221 111222223333221 12 9999999743221 111 11234
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+.+|+++|.|+..++++|...
T Consensus 180 ~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 180 PDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CceEEEEcCCCCCHHHHHHHHHhh
Confidence 568999999999999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-14 Score=128.67 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=97.3
Q ss_pred EEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCc-cccccccccccccccCCEE
Q psy17315 100 GIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAA-EGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 100 ~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~-~~~~~~~~~l~~i~~~D~i 175 (561)
+++|.+|||||||+|+|++.. ..+++.|++|++..... ..+..+.++||||+..... ....+...+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 478999999999999999887 55677888887765432 2345789999999975432 1112223344567889999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
++|+|+..... .... .+...+.....+ ++||+|..+.... ............+.+|++
T Consensus 81 i~v~d~~~~~~----------~~~~-~~~~~~~~~~~piiiv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~Sa~ 141 (157)
T cd01894 81 LFVVDGREGLT----------PADE-EIAKYLRKSKKPVILVVNKVDNIKEEDE--------AAEFYSLGFGEPIPISAE 141 (157)
T ss_pred EEEEeccccCC----------ccHH-HHHHHHHhcCCCEEEEEECcccCChHHH--------HHHHHhcCCCCeEEEecc
Confidence 99998752110 0011 112223222333 9999999753211 111222333467999999
Q ss_pred CCCCHHHHHHHHHhh
Q psy17315 253 PNVGKSTFFNVLTKR 267 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~ 267 (561)
+|.|+..+++++.+.
T Consensus 142 ~~~gv~~l~~~l~~~ 156 (157)
T cd01894 142 HGRGIGDLLDAILEL 156 (157)
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=126.97 Aligned_cols=148 Identities=24% Similarity=0.270 Sum_probs=97.9
Q ss_pred EEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc--ccccccccccccccCCEEE
Q psy17315 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 101 ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~~D~il 176 (561)
++|.+|||||||+|++++....++.+|++|.+..... ..+..+.++||||+...... ...+...++.. ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 5799999999999999998777888999999876542 22357899999998643321 11233334433 6899999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccC
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVP 253 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~ 253 (561)
+|+|+...+ .... +..++.....+ ++||+|+......... ...+.... ..+.+.+|+.+
T Consensus 80 ~v~d~~~~~------------~~~~-~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~----~~~~~~~~-~~~~~~iSa~~ 141 (158)
T cd01879 80 NVVDATNLE------------RNLY-LTLQLLELGLPVVVALNMIDEAEKRGIKID----LDKLSELL-GVPVVPTSARK 141 (158)
T ss_pred EEeeCCcch------------hHHH-HHHHHHHcCCCEEEEEehhhhcccccchhh----HHHHHHhh-CCCeEEEEccC
Confidence 999876311 0111 11223333333 9999999755433221 12222221 24689999999
Q ss_pred CCCHHHHHHHHHhh
Q psy17315 254 NVGKSTFFNVLTKR 267 (561)
Q Consensus 254 ~~Gks~l~~~l~~~ 267 (561)
|.|+..+++++...
T Consensus 142 ~~~~~~l~~~l~~~ 155 (158)
T cd01879 142 GEGIDELKDAIAEL 155 (158)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-14 Score=146.58 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=93.8
Q ss_pred CceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCCh----HHHHHHHHHHH-hcCCC---c--ccc
Q psy17315 8 PTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGP----KAPKRRKQHLS-DKLRP---K--ADS 72 (561)
Q Consensus 8 ~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~----~~~~~w~~~l~-~~~~~---~--~~~ 72 (561)
+++-|+|++++ .++.++.+.+ +.+++|.+ +||.++ +.++.|++.+. ..+.. + .++
T Consensus 72 lIv~VVD~~D~------~~s~~~~L~~----~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA 141 (365)
T PRK13796 72 LVVNVVDIFDF------NGSWIPGLHR----FVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA 141 (365)
T ss_pred EEEEEEECccC------CCchhHHHHH----HhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence 78999999999 8999999988 66677776 999863 45677876554 34432 2 566
Q ss_pred ccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcC-----C-CcccCCCcccccCccccccCCeEEEE
Q psy17315 73 KKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS-----S-AAAENFPFCTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~-----~-~~~~~~~~~T~~~~~~~~~~~~i~l~ 146 (561)
..+.+.+....... . ...+.++.+||.||||||||||+|.+. . ..+++.||||++... ...+....++
T Consensus 142 k~g~gI~eL~~~I~---~--~~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~-~~l~~~~~l~ 215 (365)
T PRK13796 142 QKGHGIDELLEAIE---K--YREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE-IPLDDGSFLY 215 (365)
T ss_pred CCCCCHHHHHHHHH---H--hcCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE-EEcCCCcEEE
Confidence 66555433211111 1 112458999999999999999999853 2 458999999999765 3445567999
Q ss_pred eCCCcccC
Q psy17315 147 DIAGLVKG 154 (561)
Q Consensus 147 DtpG~~~~ 154 (561)
||||+...
T Consensus 216 DTPGi~~~ 223 (365)
T PRK13796 216 DTPGIIHR 223 (365)
T ss_pred ECCCcccc
Confidence 99999743
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=125.83 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=100.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccc----cccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLG----NAFLSH 168 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~----~~~l~~ 168 (561)
+++|+++|.||+|||||+|+|++.. ...++.|++|++..... ..+..+.+|||||+....+....+. ...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4789999999999999999999877 56677888888764432 2344688999999975533211111 122345
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCC-ccHHHHHHHhhhcCCC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKK-TDEGEKKMLLGRVGTN 244 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~-~~~~~l~~l~~~~~~~ 244 (561)
++.+|++++|+|+..... ..... +...+.....+ ++||+|+.+...... .....+..........
T Consensus 82 ~~~~d~vi~v~d~~~~~~----------~~~~~-~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (174)
T cd01895 82 IERADVVLLVIDATEGIT----------EQDLR-IAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYA 150 (174)
T ss_pred HhhcCeEEEEEeCCCCcc----------hhHHH-HHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCC
Confidence 678999999998753210 01111 11122222233 899999975421100 0011122222222346
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+.+.+|++++.|+..+++++..
T Consensus 151 ~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 151 PIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred ceEEEeccCCCCHHHHHHHHHH
Confidence 7899999999999999998865
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=124.74 Aligned_cols=148 Identities=22% Similarity=0.189 Sum_probs=99.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc-ccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG-QGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~-~~~~~~~l~~i~~ 171 (561)
+++|+++|.||+|||||+|+|++.. ..+++.|++|.+..... .....+.++||||+....... ..........+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987 56788899998765432 223478999999986543210 0011123455678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++... .......+.. ....+ +.||+|+...... .......+.+.
T Consensus 81 ~~~~v~v~d~~~~~----------~~~~~~~~~~---~~~~~vi~v~nK~D~~~~~~~-----------~~~~~~~~~~~ 136 (157)
T cd04164 81 ADLVLFVIDASRGL----------DEEDLEILEL---PADKPIIVVLNKSDLLPDSEL-----------LSLLAGKPIIA 136 (157)
T ss_pred CCEEEEEEECCCCC----------CHHHHHHHHh---hcCCCEEEEEEchhcCCcccc-----------ccccCCCceEE
Confidence 99999999886311 0011111111 12222 8999999854322 12223557899
Q ss_pred EEccCCCCHHHHHHHHHhh
Q psy17315 249 IVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~ 267 (561)
+|+.+|.|+..|+++|.+.
T Consensus 137 ~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 137 ISAKTGEGLDELKEALLEL 155 (157)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-13 Score=126.26 Aligned_cols=151 Identities=20% Similarity=0.133 Sum_probs=91.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCcccc--cc-CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENN--KV-PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~--~~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
|.|+++|.||||||||+|+|++.. ......+++|.+..... .. ...+.+|||||.... .......++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-------~~~~~~~~~ 73 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-------IKNMLAGAG 73 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-------HHHHHhhhh
Confidence 468999999999999999999754 22223456676543321 11 457999999997422 122345578
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccccccCcCCCCCccHHHHHHHhhhc--CCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKADSKKKMGPKKTDEGEKKMLLGRV--GTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~--~~~ 244 (561)
.+|++++|+|++.. ........+.. +..... + ++||+|+....... .....+....... ...
T Consensus 74 ~ad~ii~V~d~~~~-------~~~~~~~~~~~----~~~~~~~~~ilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04171 74 GIDLVLLVVAADEG-------IMPQTREHLEI----LELLGIKRGLVVLTKADLVDEDWLE-LVEEEIRELLAGTFLADA 141 (164)
T ss_pred cCCEEEEEEECCCC-------ccHhHHHHHHH----HHHhCCCcEEEEEECccccCHHHHH-HHHHHHHHHHHhcCcCCC
Confidence 89999999987521 00111111111 111222 3 89999997421100 0011222222221 346
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+.+.+|+++|.|+..+++.+..
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 142 PIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cEEEEeCCCCcCHHHHHHHHhh
Confidence 7899999999999999998753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-13 Score=123.57 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=96.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc----cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|+++|.||||||||+|+|++.....+..|++|.+...... ....+.+|||||..... ......++.+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR-------SLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccCC
Confidence 79999999999999999999988666667777766543211 12358899999964322 11233468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-hc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
++++|+|.+.++ .++.++.+...+.. .. .+ ++||+|+...... .......+.... ....+
T Consensus 75 ~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~---~~~~~~~~~~~~-~~~~~ 140 (161)
T cd01861 75 VAVVVYDITNRQ----------SFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV---STEEGEKKAKEL-NAMFI 140 (161)
T ss_pred EEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCcc---CHHHHHHHHHHh-CCEEE
Confidence 999999875321 23333332222222 11 22 8999999633222 222222222222 25679
Q ss_pred EEEccCCCCHHHHHHHHHhh
Q psy17315 248 GIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~ 267 (561)
.+|+.+|.|.+.+++++.+.
T Consensus 141 ~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 141 ETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-14 Score=122.83 Aligned_cols=85 Identities=34% Similarity=0.448 Sum_probs=67.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccc--ccccccccccccC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQ--GLGNAFLSHISAC 172 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~--~~~~~~l~~i~~~ 172 (561)
+|+++|.||||||||+|+|++.. ..+++.+++|+.+.... .....+.++||||+..+..... .....+++.+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999976 78999999999985432 3445789999999987654322 1334567778999
Q ss_pred CEEEEEeccc
Q psy17315 173 DAIFHLCKEK 182 (561)
Q Consensus 173 D~il~VvD~~ 182 (561)
|++++|+|+.
T Consensus 81 d~ii~vv~~~ 90 (116)
T PF01926_consen 81 DLIIYVVDAS 90 (116)
T ss_dssp SEEEEEEETT
T ss_pred CEEEEEEECC
Confidence 9999999864
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=126.18 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=100.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc-C--CeEEEEeCCCcccCCc-ccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV-P--AFLNVVDIAGLVKGAA-EGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~-~--~~i~l~DtpG~~~~~~-~~~~~~~~~l~~i~~ 171 (561)
++|+++|.||||||||+|++.+........|.++.+.... ... + ..+.+|||||...... .+..........++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 4799999999999999999998764333344444332111 111 2 3578999999854221 111111112345789
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc------ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+|++++|+|.+.. ..++.+..+.+.+.... .+ |+||+|+.+.... .......+.....
T Consensus 81 ad~iilv~D~~~~----------~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~---~~~~~~~~~~~~~ 147 (198)
T cd04142 81 SRAFILVYDICSP----------DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA---PRHVLSVLVRKSW 147 (198)
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc---cHHHHHHHHHHhc
Confidence 9999999987632 23334444444444432 11 8999999753221 2222333322223
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~ 273 (561)
..+.+.+|+++|.|+..|++.+....+....
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 3467999999999999999999987554333
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-13 Score=131.39 Aligned_cols=131 Identities=20% Similarity=0.114 Sum_probs=87.3
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHH----HHHHHHHH--HhcCC---Cc--
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKA----PKRRKQHL--SDKLR---PK-- 69 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~----~~~w~~~l--~~~~~---~~-- 69 (561)
.+.+|.|+|++.| ..+.++.+.. ...++|.+ +||.+++. .+.|.+.+ +..+. .+
T Consensus 35 ad~il~VvD~~~~------~~~~~~~l~~----~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (190)
T cd01855 35 KALVVHVVDIFDF------PGSLIPRLRL----FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVIL 104 (190)
T ss_pred CcEEEEEEECccC------CCccchhHHH----hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEE
Confidence 4688999999999 7777776633 33456655 99986543 34465212 22221 22
Q ss_pred cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC---------CcccCCCcccccCccccccC
Q psy17315 70 ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS---------AAAENFPFCTIDPNENNKVP 140 (561)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~---------~~~~~~~~~T~~~~~~~~~~ 140 (561)
+++..+.+........ ......+.+++++|.||||||||||+|.+.. ..++..||+|++++.. ..+
T Consensus 105 vSA~~~~gi~eL~~~l----~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~-~~~ 179 (190)
T cd01855 105 ISAKKGWGVEELINAI----KKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKI-PLG 179 (190)
T ss_pred EECCCCCCHHHHHHHH----HHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEE-ecC
Confidence 6666665554421111 1111245689999999999999999999743 4678899999998763 334
Q ss_pred CeEEEEeCCCc
Q psy17315 141 AFLNVVDIAGL 151 (561)
Q Consensus 141 ~~i~l~DtpG~ 151 (561)
..+.++||||+
T Consensus 180 ~~~~~~DtPG~ 190 (190)
T cd01855 180 NGKKLYDTPGI 190 (190)
T ss_pred CCCEEEeCcCC
Confidence 46899999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-13 Score=123.90 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=94.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|++.+........|..+.+.... .. ....+.++||||...... .....++++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------ITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH-------HHHHHhCcC
Confidence 5899999999999999999998764333334333322211 11 123588999999643221 112346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|++..+ .+..+..+...+.... .+ ++||+|+.+...... .....+.... ..+.
T Consensus 76 ~~ii~v~d~~~~~----------s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~~ 141 (166)
T cd01869 76 HGIIIVYDVTDQE----------SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY---SEAQEFADEL-GIPF 141 (166)
T ss_pred CEEEEEEECcCHH----------HHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH---HHHHHHHHHc-CCeE
Confidence 9999999876321 2333333333333322 12 899999875443321 2222222222 3468
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|+..++.++.+..
T Consensus 142 ~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 142 LETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-13 Score=130.12 Aligned_cols=151 Identities=21% Similarity=0.152 Sum_probs=91.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccc------cccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQ------GLGNAF 165 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~------~~~~~~ 165 (561)
....+|+++|.+|+|||||+|+|++.. ..+++.+|+|.+..... .+..+.++||||+........ .+...+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE-VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE-eCCcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 455799999999999999999999875 56788899998765432 234799999999864322111 111223
Q ss_pred ccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc-
Q psy17315 166 LSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV- 241 (561)
Q Consensus 166 l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~- 241 (561)
+.....+|++++|+|++..- . ..... +...+.....+ +.||+|+....... .....++......
T Consensus 95 l~~~~~~~~ii~vvd~~~~~---------~-~~~~~-~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPL---------K-ELDLE-MLEWLRERGIPVLIVLTKADKLKKSELN-KQLKKIKKALKKDA 162 (179)
T ss_pred HHhChhhcEEEEEecCCCCC---------C-HHHHH-HHHHHHHcCCCEEEEEECcccCCHHHHH-HHHHHHHHHHhhcc
Confidence 33334578999999875210 0 01111 11223333333 89999997322111 1112233333322
Q ss_pred CCCcEEEEEccCCCCH
Q psy17315 242 GTNLKVGIVGVPNVGK 257 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gk 257 (561)
.....+.+|+++|.|+
T Consensus 163 ~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGI 178 (179)
T ss_pred CCCceEEEECCCCCCC
Confidence 2347899999999985
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=122.26 Aligned_cols=148 Identities=21% Similarity=0.208 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcc----cCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAA----ENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~----~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+|+++|.+|||||||+|+|++..... ...+..|.....+ ...+..+.++||||...... .+...++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS-------LWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHhCC
Confidence 48999999999999999998754211 1122333333222 12345789999999853221 22344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh----
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR---- 240 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~---- 240 (561)
+|++++|+|++..+ .+.... .+...+.. ...+ ++||+|...... ..........
T Consensus 74 ~~~~v~vvd~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~-----~~~~~~~~~~~~~~ 138 (167)
T cd04160 74 CHAIIYVIDSTDRE----------RFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS-----VEEIKEVFQDKAEE 138 (167)
T ss_pred CCEEEEEEECchHH----------HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC-----HHHHHHHhcccccc
Confidence 99999999876321 111111 11111111 1112 899999864321 1222222221
Q ss_pred c--CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 241 V--GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 241 ~--~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
. .....+.+|+++|.|+.+++++|.++
T Consensus 139 ~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 139 IGRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred ccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 1 23468999999999999999999753
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-13 Score=123.48 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=90.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
..++|+++|.+|||||||+++|+.... ....|.++.+..........+.++||||...... .....++.||+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~a~~ 79 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-------LWRHYYTGTQG 79 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceEEEEECCEEEEEEECCCCHHHHH-------HHHHHhccCCE
Confidence 347999999999999999999986542 1122322222211122345699999999853321 12234688999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhhc----CCC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GTN 244 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~~ 244 (561)
+++|+|++... ...+....+.+.+... ..+ |+||+|+.+.. ...++....... ...
T Consensus 80 ii~v~D~t~~~---------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~ 145 (168)
T cd04149 80 LIFVVDSADRD---------RIDEARQELHRIINDREMRDALLLVFANKQDLPDAM-----KPHEIQEKLGLTRIRDRNW 145 (168)
T ss_pred EEEEEeCCchh---------hHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC-----CHHHHHHHcCCCccCCCcE
Confidence 99999986321 1111112222222211 112 89999986431 223333332211 123
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+||++|.|+..++++|.+
T Consensus 146 ~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCCChHHHHHHHhc
Confidence 5688999999999999999975
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-15 Score=137.36 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=84.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhhcccHHHHHHH-----HHHHHHHHhhCCc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELRLKDVEHIEKE-----INKIEKLVQRGDK 318 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~l~Dt~Gi~~~-----~~~l~~~~~~~~~ 318 (561)
+|++.|.||+|||+|||+|++.....+++ ||+| ++..+ +...+.++.++||||+... -+++...+...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~---pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~-- 76 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNW---PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS-- 76 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEES---TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCC---CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh--
Confidence 68999999999999999999997554444 5664 54443 4555678999999997431 01111111000
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
...|++..|+|+ .. .+.++..+.++.. .++|+|+|+||+|.-.
T Consensus 77 ------------------------~~~D~ii~VvDa-----------~~-l~r~l~l~~ql~e-~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 77 ------------------------EKPDLIIVVVDA-----------TN-LERNLYLTLQLLE-LGIPVVVVLNKMDEAE 119 (156)
T ss_dssp ------------------------TSSSEEEEEEEG-----------GG-HHHHHHHHHHHHH-TTSSEEEEEETHHHHH
T ss_pred ------------------------cCCCEEEEECCC-----------CC-HHHHHHHHHHHHH-cCCCEEEEEeCHHHHH
Confidence 000111111111 01 1233444444433 5899999999996533
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
........+.+.+.+ +.|++++||+++.|+++|.+
T Consensus 120 ~~g~~id~~~Ls~~L-----g~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 120 RKGIEIDAEKLSERL-----GVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HTTEEE-HHHHHHHH-----TS-EEEEBTTTTBTHHHHHH
T ss_pred HcCCEECHHHHHHHh-----CCCEEEEEeCCCcCHHHHHh
Confidence 222233456666665 78999999999999988744
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-13 Score=124.04 Aligned_cols=136 Identities=25% Similarity=0.301 Sum_probs=93.2
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|.|+|++.| ..+.+..+.+ .....++|.+ +||.+.+..+.|..+.+..+..+ .+++.+.+.
T Consensus 13 aD~vl~V~D~~~~------~~~~~~~l~~--~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi 84 (156)
T cd01859 13 SDVVLEVLDARDP------ELTRSRKLER--YVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred CCEEEEEeeCCCC------cccCCHHHHH--HHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccH
Confidence 4678999999999 7777766654 1112356766 99998766677764444334333 677766665
Q ss_pred CCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCc
Q psy17315 79 KKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGL 151 (561)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~ 151 (561)
+.......... .......+++++|.||+|||||+|+|.+.. ..+++.+|+|++.+. ...+..++++||||+
T Consensus 85 ~~L~~~l~~~~-~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~DtpGi 156 (156)
T cd01859 85 KILRRTIKELA-KIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL-VKITSKIYLLDTPGV 156 (156)
T ss_pred HHHHHHHHHHH-hhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE-EEcCCCEEEEECcCC
Confidence 44222221111 122345789999999999999999999876 678889999977543 334557999999996
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=123.27 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=91.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
...+|+++|.+|||||||+|+|++.. ....+..|...... ......+.++||||...... .+...++.+|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~--~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~d 83 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTL--EYEGYKLNIWDVGGQKTLRP-------YWRNYFESTD 83 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEE--EECCEEEEEEECCCCHHHHH-------HHHHHhCCCC
Confidence 45789999999999999999999875 23333333222111 11234689999999753221 1234468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh----cC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VG 242 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~ 242 (561)
++++|+|++..+. +... ..+...+.. ...+ ++||+|+.+.. ........... ..
T Consensus 84 ~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~ 148 (173)
T cd04154 84 ALIWVVDSSDRLR----------LDDCKRELKELLQEERLAGATLLILANKQDLPGAL-----SEEEIREALELDKISSH 148 (173)
T ss_pred EEEEEEECCCHHH----------HHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-----CHHHHHHHhCccccCCC
Confidence 9999998763221 1111 112222211 1112 89999997432 22333333322 13
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+.+|+++|.|++.+++++.+
T Consensus 149 ~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 149 HWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ceEEEeccCCCCcCHHHHHHHHhc
Confidence 446899999999999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-13 Score=122.25 Aligned_cols=158 Identities=20% Similarity=0.146 Sum_probs=101.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-cccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~ 171 (561)
..+|+++|.||+|||||+|+|++.. +.+.+.+.+|+....... ....+.++||||+..+... ...+.......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999999987 556666777765544322 2246889999998754421 11122223445788
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++.. .......+.+.+.....+ +.||+|+.... ......+..+.........+.
T Consensus 83 ~d~i~~v~d~~~~-----------~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~ 148 (168)
T cd04163 83 VDLVLFVVDASEP-----------IGEGDEFILELLKKSKTPVILVLNKIDLVKDK---EDLLPLLEKLKELGPFAEIFP 148 (168)
T ss_pred CCEEEEEEECCCc-----------cCchHHHHHHHHHHhCCCEEEEEEchhccccH---HHHHHHHHHHHhccCCCceEE
Confidence 9999999987632 011111222233332222 89999997311 111222344444444567899
Q ss_pred EEccCCCCHHHHHHHHHhh
Q psy17315 249 IVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~ 267 (561)
+|++++.|...++++|.+.
T Consensus 149 ~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 149 ISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEeccCCChHHHHHHHHhh
Confidence 9999999999999999764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=121.30 Aligned_cols=147 Identities=15% Similarity=0.145 Sum_probs=85.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
+||+++|.+|||||||++++...... ...|.+.............+.++||||..... ..+...++.||+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~~i 72 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGLI 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCEEE
Confidence 47999999999999999999654421 22232211111111223568999999974322 12234579999999
Q ss_pred EEecccccchhhhccchhhHhhhH-HHHHHHHHH--h-cch---hhccccccCcCCCCCccHHHHHHHhhh----cCCCc
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNL-KLLETRIRD--L-RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTNL 245 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~--~-~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~~ 245 (561)
+|+|++..+ .++.. +.+.+.+.. . ..+ ++||+|+.+... ..++...... .....
T Consensus 73 ~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i~~~~~~~~~~~~~~~ 137 (159)
T cd04150 73 FVVDSNDRE----------RIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-----AAEVTDKLGLHSLRNRNWY 137 (159)
T ss_pred EEEeCCCHH----------HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-----HHHHHHHhCccccCCCCEE
Confidence 999986322 11111 112222211 1 112 899999964321 1122111111 12234
Q ss_pred EEEEEccCCCCHHHHHHHHHh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~ 266 (561)
.+.+||++|.|+++++++|.+
T Consensus 138 ~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 138 IQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEeeCCCCCCHHHHHHHHhc
Confidence 568999999999999999975
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-13 Score=143.88 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=99.0
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccc-ccccc
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLG-NAFLS 167 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~-~~~l~ 167 (561)
....+++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.++||||+......-+..+ .....
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 34567899999999999999999999987 67899999999875542 2345689999999964332111111 22345
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.++++|++++|+|++.... .+.. +...+.....+ |+||+|+.+. ....+. .. ...
T Consensus 279 ~~~~aD~il~V~D~s~~~s----------~~~~--~l~~~~~~~~piIlV~NK~Dl~~~------~~~~~~---~~-~~~ 336 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLT----------KDDF--LIIDLNKSKKPFILVLNKIDLKIN------SLEFFV---SS-KVL 336 (442)
T ss_pred HHhhCCEEEEEEECCCCCC----------hhHH--HHHHHhhCCCCEEEEEECccCCCc------chhhhh---hh-cCC
Confidence 6789999999999863211 1111 11122222222 8999999643 111111 11 112
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++ .|+..+++.+.+..
T Consensus 337 ~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 337 NSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ceEEEEEec-CCHHHHHHHHHHHH
Confidence 467899998 57777777776653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=122.29 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=88.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
+|+++|.+|||||||+|+|++.... . +..|...... ......+.++||||..... ..+...++.+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-C--cCCcCceeEEEEEECCEEEEEEECCCChhcc-------hHHHHHhccCCEE
Confidence 5899999999999999999976421 1 2223222111 1234578999999975322 1233456889999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHH--hc-ch---hhccccccCcCCCCCccHHHHHHHhhhcC-----CC
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD--LR-RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG-----TN 244 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~-----~~ 244 (561)
++|+|++..+.. .+-...+.+.+.. .. .+ ++||+|+... ........+..... ..
T Consensus 71 i~V~D~s~~~s~---------~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~ 136 (169)
T cd04158 71 VFVVDSSHRDRV---------SEAHSELAKLLTEKELRDALLLIFANKQDVAGA-----LSVEEMTELLSLHKLCCGRSW 136 (169)
T ss_pred EEEEeCCcHHHH---------HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-----CCHHHHHHHhCCccccCCCcE
Confidence 999988642211 1111111112211 11 12 8999998632 12222333222111 12
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.+|+++|.|+.+++++|.+...
T Consensus 137 ~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 137 YIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999988743
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-13 Score=123.69 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=85.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
+|+++|.||||||||+|+|+|...... .|.... .... .+|||||...... .+...+...++.+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~~----~~~~v~---~~~~--~~iDtpG~~~~~~---~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLAR----KTQAVE---FNDK--GDIDTPGEYFSHP---RWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccCc----cceEEE---ECCC--CcccCCccccCCH---HHHHHHHHHHhcCCEEEE
Confidence 699999999999999999998652111 111111 1111 2699999864432 122233445789999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcC-CCcEEEEEc
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG-TNLKVGIVG 251 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~-~~~~i~isg 251 (561)
|+|++..+.. .. .++... ..+ +.||+|+.+. ....+........ ..+.+.+|+
T Consensus 71 v~d~~~~~s~---------~~------~~~~~~~~~~~ii~v~nK~Dl~~~------~~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 71 VHGANDPESR---------LP------AGLLDIGVSKRQIAVISKTDMPDA------DVAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred EEeCCCcccc---------cC------HHHHhccCCCCeEEEEEccccCcc------cHHHHHHHHHHcCCCCCEEEEEC
Confidence 9998643211 00 011111 112 8999998641 1223333333333 258899999
Q ss_pred cCCCCHHHHHHHHHhhc
Q psy17315 252 VPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 252 ~~~~Gks~l~~~l~~~~ 268 (561)
++|.|++.|+.++.+..
T Consensus 130 ~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 130 HDPQSVQQLVDYLASLT 146 (158)
T ss_pred CCccCHHHHHHHHHHhc
Confidence 99999999999998764
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=121.59 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=93.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|.+........|.++.+.... ... ...+.++||||...... + ....++.+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA----I---TSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH----H---HHHHHCCC
Confidence 5899999999999999999998774433344444332221 111 23588999999753221 1 12345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .+..+..+...+.+... + |+||+|+....... ......+.... ....
T Consensus 77 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~ 142 (165)
T cd01868 77 VGALLVYDITKKQ----------TFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP---TEEAKAFAEKN-GLSF 142 (165)
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC---HHHHHHHHHHc-CCEE
Confidence 9999999875311 23333333333333221 2 89999987543222 22233333222 3467
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..+++++.+.
T Consensus 143 ~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999865
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-13 Score=141.54 Aligned_cols=135 Identities=22% Similarity=0.204 Sum_probs=97.6
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCCh----HHHHHHHH-HHHhcCCC---c--
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGP----KAPKRRKQ-HLSDKLRP---K-- 69 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~----~~~~~w~~-~l~~~~~~---~-- 69 (561)
.+.+++.|+|++++ .++.++.+.+ ..+++|.+ +||.++ +..+.|++ +++..+.. +
T Consensus 63 ~~~~Il~VvD~~d~------~~s~~~~l~~----~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~ 132 (360)
T TIGR03597 63 SNALIVYVVDIFDF------EGSLIPELKR----FVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL 132 (360)
T ss_pred CCcEEEEEEECcCC------CCCccHHHHH----HhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence 34588999999999 9999999988 55677776 999865 35677874 45555542 2
Q ss_pred cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC------CcccCCCcccccCccccccCCeE
Q psy17315 70 ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS------AAAENFPFCTIDPNENNKVPAFL 143 (561)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~------~~~~~~~~~T~~~~~~~~~~~~i 143 (561)
+++..+.+........... ..+.++++||.||||||||||+|++.. ..+++.||+|++... ...+..+
T Consensus 133 vSAk~g~gv~eL~~~l~~~-----~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~-~~~~~~~ 206 (360)
T TIGR03597 133 VSAKKGNGIDELLDKIKKA-----RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE-IPLDDGH 206 (360)
T ss_pred ecCCCCCCHHHHHHHHHHH-----hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE-EEeCCCC
Confidence 5666665544321111111 124689999999999999999999753 578999999998765 3344568
Q ss_pred EEEeCCCcccCC
Q psy17315 144 NVVDIAGLVKGA 155 (561)
Q Consensus 144 ~l~DtpG~~~~~ 155 (561)
.++||||+....
T Consensus 207 ~l~DtPG~~~~~ 218 (360)
T TIGR03597 207 SLYDTPGIINSH 218 (360)
T ss_pred EEEECCCCCChh
Confidence 999999998543
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=127.55 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=96.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc----cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||+|+|++........|..+.+.... .. ....+.+|||||...+. .+. -..+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~----~l~---~~~~~~ 73 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG----KML---DKYIYG 73 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----HHH---HHHhhc
Confidence 4799999999999999999997764333334443332211 11 12468899999964322 122 233689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc------h---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR------S---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+|++++|+|.+..+ .++.+..+...+..... + |+||+|+.+..... ......+....+
T Consensus 74 ad~iilV~D~t~~~----------s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~---~~~~~~~~~~~~ 140 (215)
T cd04109 74 AHAVFLVYDVTNSQ----------SFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK---DDKHARFAQANG 140 (215)
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC---HHHHHHHHHHcC
Confidence 99999999876322 23444444444443321 1 89999997443322 222333332222
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
...+.+|+++|.|+..+++++.+....
T Consensus 141 -~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 141 -MESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred -CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357889999999999999999987543
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=121.16 Aligned_cols=150 Identities=16% Similarity=0.138 Sum_probs=91.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccC--ccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP--NEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~--~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|+|++........|..+.+. ... ......+.+|||||...... .....++.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-------~~~~~~~~~ 74 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-------ITTAYYRGA 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHccCC
Confidence 5899999999999999999998763222222221111 110 11124689999999753221 123446899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .++.+..+...+..... + |+||+|+.+..... ......+.... ..+.
T Consensus 75 ~~~l~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~ 140 (165)
T cd01865 75 MGFILMYDITNEE----------SFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS---SERGRQLADQL-GFEF 140 (165)
T ss_pred cEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC---HHHHHHHHHHc-CCEE
Confidence 9999999875321 22233322233332221 1 89999997543322 12222222222 2358
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..++.++...
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 141 FEASAKENINVKQVFERLVDI 161 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=121.95 Aligned_cols=148 Identities=18% Similarity=0.110 Sum_probs=90.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
..+|+++|.+|||||||+++|++.. ....+..|.+... .......+.++||||..... ..+..+++.+|+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~ 85 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVYKNIRFLMWDIGGQESLR-------SSWNTYYTNTDA 85 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEECCeEEEEEECCCCHHHH-------HHHHHHhhcCCE
Confidence 4789999999999999999998765 3333333333221 12234579999999975322 223345689999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh----cCCC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTN 244 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~ 244 (561)
+++|+|++..+ ......+.+...+... ..+ ++||+|+.... ...++...+.. ....
T Consensus 86 vi~V~D~s~~~---------~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~-----~~~~i~~~l~~~~~~~~~~ 151 (174)
T cd04153 86 VILVIDSTDRE---------RLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM-----TPAEISESLGLTSIRDHTW 151 (174)
T ss_pred EEEEEECCCHH---------HHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC-----CHHHHHHHhCcccccCCce
Confidence 99999986422 1111111222222211 112 89999986421 12222222221 1223
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+|+++|.|+..++++|.+
T Consensus 152 ~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 152 HIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEEecccCCCCCHHHHHHHHhc
Confidence 5789999999999999999975
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-13 Score=127.06 Aligned_cols=160 Identities=20% Similarity=0.148 Sum_probs=99.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCccc------ccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEG------QGLGNAF 165 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~ 165 (561)
...++|+++|.+|||||||+|+|++.. ..+++.+|+|+..... ..+.++.++||||+....... ..+...+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF-EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEE-ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 355789999999999999999999874 6778889998876542 234679999999975322111 1112233
Q ss_pred ccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 166 LSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 166 l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+.....++++++|+|+.... ..... .+.+.+.....+ +.||+|+....... .....+.......
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~--------~~~~~---~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~-~~~~~i~~~l~~~- 167 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPL--------KELDL---QMIEWLKEYGIPVLIVLTKADKLKKGERK-KQLKKVRKALKFG- 167 (196)
T ss_pred HHhCccceEEEEEEecCCCC--------CHHHH---HHHHHHHHcCCcEEEEEECcccCCHHHHH-HHHHHHHHHHHhc-
Confidence 44445668888998765211 00000 111222332222 89999986321110 0011122222221
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.+||+++.|...+++.|.+.
T Consensus 168 ~~~~~~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 168 DDEVILFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998764
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=120.04 Aligned_cols=149 Identities=18% Similarity=0.139 Sum_probs=87.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
+|+++|.+|||||||+++|++... ...+..|.+.... ......+.++||||...... .+...++.+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~--~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~ 71 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF--EKGNLSFTAFDMSGQGKYRG-------LWEHYYKNIQG 71 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE--EECCEEEEEEECCCCHhhHH-------HHHHHHccCCE
Confidence 489999999999999999998642 2334444332211 12345689999999753321 12234688999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHH--HHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc----CCCc
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETR--IRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GTNL 245 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~~~ 245 (561)
+++|+|++...... .....++.+.+. +.....+ ++||+|+.+.. ....+...+... ....
T Consensus 72 ii~v~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-----~~~~~~~~l~~~~~~~~~~~ 140 (162)
T cd04157 72 IIFVIDSSDRLRLV------VVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-----TAVKITQLLGLENIKDKPWH 140 (162)
T ss_pred EEEEEeCCcHHHHH------HHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-----CHHHHHHHhCCccccCceEE
Confidence 99999986322100 001111111110 0111122 99999997432 122233222211 1224
Q ss_pred EEEEEccCCCCHHHHHHHHHh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~ 266 (561)
.+.+|+++|.|++.++++|.+
T Consensus 141 ~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 141 IFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEeeCCCCCchHHHHHHHhc
Confidence 678999999999999999865
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=121.14 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=93.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCccc--CCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE--NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~--~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|++++...... +..|.+...... ......+.++||||..... ......++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR-------SITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccC
Confidence 6899999999999999999998763322 222332221111 1112368899999954221 1123456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|++.. ..++.+..+...+..... + |+||+|+.+.... .......+.... ....
T Consensus 78 d~il~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~---~~~~~~~~~~~~-~~~~ 143 (168)
T cd01866 78 AGALLVYDITRR----------ETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV---SYEEGEAFAKEH-GLIF 143 (168)
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCC---CHHHHHHHHHHc-CCEE
Confidence 999999987632 223333333333333221 1 8999999753322 222233332222 3357
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+..|.|++.++..+....+
T Consensus 144 ~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 144 METSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987643
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=122.95 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=91.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|+++|.+|||||||+|+|.+.. ..+.+..+.+.... ...+..+.++||||...... .+..+++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~a 85 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEEL--AIGNIKFTTFDLGGHQQARR-------LWKDYFPEV 85 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEE--EECCEEEEEEECCCCHHHHH-------HHHHHhCCC
Confidence 455899999999999999999999875 22222222221111 12245688999999753321 223456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhhc-----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----- 241 (561)
|++++|+|++..+. .......+.+.+.. ...+ ++||+|+.... ...++...++..
T Consensus 86 d~ii~vvD~~~~~~---------~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-----~~~~i~~~l~l~~~~~~ 151 (184)
T smart00178 86 NGIVYLVDAYDKER---------FAESKRELDALLSDEELATVPFLILGNKIDAPYAA-----SEDELRYALGLTNTTGS 151 (184)
T ss_pred CEEEEEEECCcHHH---------HHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC-----CHHHHHHHcCCCccccc
Confidence 99999999863221 11111111111111 1112 99999986321 223333332211
Q ss_pred ------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 ------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+....+.+|+++|.|++.++++|.++
T Consensus 152 ~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 152 KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 34457999999999999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.8e-13 Score=146.39 Aligned_cols=146 Identities=24% Similarity=0.281 Sum_probs=99.6
Q ss_pred EcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc--ccccccccccccccCCEEEEE
Q psy17315 103 GVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISACDAIFHL 178 (561)
Q Consensus 103 G~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~~D~il~V 178 (561)
|.||||||||+|+|++....++++||+|.+...+. ..+..+.++||||..+.... .+.+...++. .+.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEEE
Confidence 88999999999999998888999999999876542 23457899999999754321 1122222221 2578999999
Q ss_pred ecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCC
Q psy17315 179 CKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNV 255 (561)
Q Consensus 179 vD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~ 255 (561)
+|++.. .+.+... .++.+...+ ++||+|+.++.+... +.+.+++.. ..+.+.+|+++|.
T Consensus 80 vDat~l------------er~l~l~-~ql~~~~~PiIIVlNK~Dl~~~~~i~~-d~~~L~~~l----g~pvv~tSA~tg~ 141 (591)
T TIGR00437 80 VDASNL------------ERNLYLT-LQLLELGIPMILALNLVDEAEKKGIRI-DEEKLEERL----GVPVVPTSATEGR 141 (591)
T ss_pred ecCCcc------------hhhHHHH-HHHHhcCCCEEEEEehhHHHHhCCChh-hHHHHHHHc----CCCEEEEECCCCC
Confidence 988631 1122221 233333444 899999976555432 222233322 2478999999999
Q ss_pred CHHHHHHHHHhh
Q psy17315 256 GKSTFFNVLTKR 267 (561)
Q Consensus 256 Gks~l~~~l~~~ 267 (561)
|++++++++.+.
T Consensus 142 Gi~eL~~~i~~~ 153 (591)
T TIGR00437 142 GIERLKDAIRKA 153 (591)
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=120.13 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=93.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||+|++++........|..+.+.... .. ....+.++||||...... .....+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~~~ 75 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------ITTAYYRG 75 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH-------HHHHHhCC
Confidence 36899999999999999999998763332223222221111 11 123688999999643221 12344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.. ..++.+..+...+..... + ++||+|+.+..... ......+.... ..+
T Consensus 76 ad~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~ 141 (167)
T cd01867 76 AMGIILVYDITDE----------KSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS---KEEGEALADEY-GIK 141 (167)
T ss_pred CCEEEEEEECcCH----------HHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC---HHHHHHHHHHc-CCE
Confidence 9999999987532 223333333333333221 1 89999998543322 22222332222 235
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+.+|.|+..++.++.+..
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 142 FLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=122.54 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=94.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCccc-ccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCT-IDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T-~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||++++++.......++.++ .+.... ... ...+.+|||||...... .....++.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 73 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS-------VTHAYYRD 73 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH-------hhHHHccC
Confidence 4799999999999999999998764433333222 221110 111 23688999999643221 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.. ..+..+..+...+.+... + ++||+|+....... ......+.... ..+
T Consensus 74 ad~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~---~~~~~~l~~~~-~~~ 139 (191)
T cd04112 74 AHALLLLYDITNK----------ASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVK---REDGERLAKEY-GVP 139 (191)
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccC---HHHHHHHHHHc-CCe
Confidence 9999999987532 122333333333443322 1 89999997432221 12233333222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
.+.+|+++|.|++.++.++.+.....
T Consensus 140 ~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 140 FMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 79999999999999999999876443
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=118.96 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=93.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c-c--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N-K--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~-~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|.+........+..+.+.... . . ....+.++||||...... .....++.+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~ 73 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS-------LGVAFYRGA 73 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh-------HHHHHhcCC
Confidence 4799999999999999999998763322222222111111 1 1 123477999999643221 123446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
|++++|+|+...+ .+..+..+...+.... .+ ++||+|+...... .......+....+
T Consensus 74 d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 140 (172)
T cd01862 74 DCCVLVYDVTNPK----------SFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV---STKKAQQWCQSNG 140 (172)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc---CHHHHHHHHHHcC
Confidence 9999999875321 1222322222222211 12 8899999852221 2333444544444
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
....+.+|+++|.|+..+++++.+..+
T Consensus 141 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 141 NIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999987643
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-14 Score=142.94 Aligned_cols=160 Identities=20% Similarity=0.191 Sum_probs=107.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh-hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII-NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.-+.|++.|+||+|||+|+|.|++......+..| .|.||. +.+.+. +..+.+.||.|+ ++.++......++.+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF--ATLdpttR~~~l~~g~~vlLtDTVGF---I~~LP~~LV~AFksT 265 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLF--ATLDPTTRRIELGDGRKVLLTDTVGF---IRDLPHPLVEAFKST 265 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecccccc--ccccCceeEEEeCCCceEEEecCccC---cccCChHHHHHHHHH
Confidence 4578999999999999999999988766666655 566776 445555 467999999999 777777776666666
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+++. .++|+++||+|+.+. ......+....+|..+.. ..+|+|+|+||+ |.+.
T Consensus 266 LEE~------------------~~aDlllhVVDaSdp------~~~~~~~~v~~vL~el~~-~~~p~i~v~NKi--D~~~ 318 (411)
T COG2262 266 LEEV------------------KEADLLLHVVDASDP------EILEKLEAVEDVLAEIGA-DEIPIILVLNKI--DLLE 318 (411)
T ss_pred HHHh------------------hcCCEEEEEeecCCh------hHHHHHHHHHHHHHHcCC-CCCCEEEEEecc--cccC
Confidence 5554 445788877775332 111111223445666654 579999999999 4443
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
. ......+.. . ....|++||++|.|++.|.+...
T Consensus 319 ~-~~~~~~~~~----~--~~~~v~iSA~~~~gl~~L~~~i~ 352 (411)
T COG2262 319 D-EEILAELER----G--SPNPVFISAKTGEGLDLLRERII 352 (411)
T ss_pred c-hhhhhhhhh----c--CCCeEEEEeccCcCHHHHHHHHH
Confidence 1 112222222 1 12589999999999988755443
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-12 Score=118.10 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
+|+++|.+|||||||+|++++.. ....+..+.+..... ......+.++||||..... ..+...++.+|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~~~iv 72 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQ-LEKHLSLTVWDVGGQEKMR-------TVWKCYLENTDGLV 72 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEE-eCCceEEEEEECCCCHhHH-------HHHHHHhccCCEEE
Confidence 48999999999999999999876 333333332221111 1123468999999975322 12334568899999
Q ss_pred EEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhh--hc---CCC
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLG--RV---GTN 244 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~--~~---~~~ 244 (561)
+|+|++... .+...+ .+.+.+.. ...+ ++||+|+.... ....+..... .. ...
T Consensus 73 ~v~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~ 137 (160)
T cd04156 73 YVVDSSDEA----------RLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-----TAEEITRRFKLKKYCSDRDW 137 (160)
T ss_pred EEEECCcHH----------HHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-----CHHHHHHHcCCcccCCCCcE
Confidence 999876321 111111 11222211 1112 99999996321 1222222211 11 123
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+|+++|.|++.++++|.+
T Consensus 138 ~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCCChHHHHHHHhc
Confidence 4678999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=117.79 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+|+++|.+|||||||++++.+........+..+.+.... ...+ ..+.++||||..... ......++.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~ 75 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR-------TITQSYYRS 75 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhcc
Confidence 36899999999999999999987652211111111111111 1111 368899999964221 112334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .+..+..+...+..... + |+||+|+.+.... .......+........
T Consensus 76 ~d~~llv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 142 (165)
T cd01864 76 ANGAIIAYDITRRS----------SFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREV---LFEEACTLAEKNGMLA 142 (165)
T ss_pred CCEEEEEEECcCHH----------HHHhHHHHHHHHHHhCCCCCcEEEEEECccccccccc---CHHHHHHHHHHcCCcE
Confidence 99999999876322 22233222222322211 1 8999999754332 2223333434444456
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..+++.+.+.
T Consensus 143 ~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 143 VLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999864
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-12 Score=116.69 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=92.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--c--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--N--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+|+|.+........|..+.+.... . .....+.++||||...... .....++.+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~ 73 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS-------VTRSYYRGA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH-------hHHHHhcCC
Confidence 4799999999999999999998763332223222221111 1 1123588999999743221 123346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .++++..+...+...... ++||+|..+.... .......+..... ...
T Consensus 74 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-~~~ 139 (161)
T cd04113 74 AGALLVYDITNRT----------SFEALPTWLSDARALASPNIVVILVGNKSDLADQREV---TFLEASRFAQENG-LLF 139 (161)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccC---CHHHHHHHHHHcC-CEE
Confidence 9999999876322 223333333333222211 8999999753322 2233333333333 578
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..+++++...
T Consensus 140 ~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 140 LETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-12 Score=117.81 Aligned_cols=150 Identities=18% Similarity=0.137 Sum_probs=90.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c-----ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N-----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~-----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
++|+++|.+|+|||||+|++++........|..+.+.... . .....+.++||||...... + ....++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~ 73 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA----I---TKAYYR 73 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH----h---HHHHhc
Confidence 4799999999999999999998653222222222222111 0 1123689999999642221 1 233468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+........ .+...+.... ..+
T Consensus 74 ~~~~~v~v~d~~~~~----------s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~---~~~~~~~~~~-~~~ 139 (162)
T cd04106 74 GAQACILVFSTTDRE----------SFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN---EEAEALAKRL-QLP 139 (162)
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH---HHHHHHHHHc-CCe
Confidence 999999999875322 2233333222222211 11 899999975433221 2222222222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..++.+|.+.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 140 LFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-12 Score=116.74 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=91.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|++........|..+.+.... ......+.++||||..... .+. ...++.+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~---~~~~~~~ 73 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL----EVR---NEFYKDT 73 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH----HHH---HHHhccC
Confidence 4799999999999999999998773322223222221110 1123468899999974322 111 2235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--------ch---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
|++++|+|.+.++ .+..+..+..++.... .+ |+||+|+.+.... .......+....
T Consensus 74 d~~ilv~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~ 140 (168)
T cd04119 74 QGVLLVYDVTDRQ----------SFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV---SEDEGRLWAESK 140 (168)
T ss_pred CEEEEEEECCCHH----------HHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccccc---CHHHHHHHHHHc
Confidence 9999999876321 2233333333332221 11 8999999742222 122222222222
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..+++++.+..
T Consensus 141 -~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 141 -GFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 24579999999999999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-12 Score=116.33 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=91.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|++.+... +..++.++.+.... ... ...+.++||||...... + ....++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA----M---REQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH----H---HHHHHhhC
Confidence 6899999999999999999987653 23333333322111 111 23578999999753321 1 22345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .++.+..+...+.... .+ ++||+|+.+..... ......+.... ..+
T Consensus 75 ~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~---~~~~~~~~~~~-~~~ 140 (164)
T cd04145 75 EGFLLVFSVTDRG----------SFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS---REEGQELARKL-KIP 140 (164)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec---HHHHHHHHHHc-CCc
Confidence 9999999876322 1223333333333221 12 89999997543221 12222232222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..+++++.+.
T Consensus 141 ~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 141 YIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHh
Confidence 7999999999999999999764
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=116.68 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=89.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
||+++|.+|||||||+|++++.. ....+..+.+.... ......+.++||||...... .+...++.+|+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~~i 71 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETV--EYKNVSFTVWDVGGQDKIRP-------LWKHYYENTNGII 71 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEE--EECCEEEEEEECCCChhhHH-------HHHHHhccCCEEE
Confidence 58999999999999999999886 23333333333221 12245799999999753321 2233457889999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh----cCCCcE
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTNLK 246 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~~~ 246 (561)
+|+|++..+ ........+...+.. ...+ ++||+|..... ....+...... ....+.
T Consensus 72 ~v~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 137 (158)
T cd00878 72 FVVDSSDRE---------RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-----SVSELIEKLGLEKILGRRWHI 137 (158)
T ss_pred EEEECCCHH---------HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-----CHHHHHHhhChhhccCCcEEE
Confidence 999986322 111111111111111 1112 89999997532 12223332222 134468
Q ss_pred EEEEccCCCCHHHHHHHHHh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~ 266 (561)
+.+|+++|.|...++++|..
T Consensus 138 ~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 138 QPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEeeCCCCCCHHHHHHHHhh
Confidence 99999999999999999865
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=118.50 Aligned_cols=150 Identities=19% Similarity=0.124 Sum_probs=92.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||++++.+.... ..++.++...... . .....+.+|||||...... .....+++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 74 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA-------VTRSYYRG 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHHHhcC
Confidence 68999999999999999999977522 1222221111100 1 1123688999999743221 12345689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.++ .++.+..+.+.+...... |+||+|+.+..... ......+... ....
T Consensus 75 ~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~---~~~~~~~~~~-~~~~ 140 (166)
T cd04122 75 AAGALMVYDITRRS----------TYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT---YEEAKQFADE-NGLL 140 (166)
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC---HHHHHHHHHH-cCCE
Confidence 99999999876322 233333333333222211 89999997554332 2222223222 2346
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+.+++..+....
T Consensus 141 ~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 141 FLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998764
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.1e-12 Score=116.24 Aligned_cols=149 Identities=18% Similarity=0.190 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|++.+.... ..++.++.+.... ... ...+.++||||...... +. -..++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----MR---DLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCccccch----HH---HHHhhcC
Confidence 58999999999999999999876522 2223333221111 111 23577899999754331 11 2235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .++.+..+.+.+.... .+ ++||+|+.+.... .......+..... .+
T Consensus 74 ~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-~~ 139 (163)
T cd04136 74 QGFVLVYSITSQS----------SFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVV---SREEGQALARQWG-CP 139 (163)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee---cHHHHHHHHHHcC-Ce
Confidence 9999999875321 2233333333333321 12 8999998753222 1222222322222 56
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..++.++.+.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 140 FYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHh
Confidence 7999999999999999999864
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-12 Score=119.12 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=88.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
.++|+++|.+|||||||++++..... ....|.+..+..........+.++||||...... .+...+++||++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~ad~i 84 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRP-------LWRHYYTNTQGL 84 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CCcCCccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHhCCCCEE
Confidence 47999999999999999999964432 1122322222111122334689999999753221 223346899999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHH--hc-ch---hhccccccCcCCCCCccHHHHHHHhhh----cCCCc
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD--LR-RS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTNL 245 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~~ 245 (561)
++|+|++.++. ..+..+.+...+.+ .. .+ ++||+|+.+... ..++....+. .....
T Consensus 85 i~v~D~t~~~s---------~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i~~~~~~~~~~~~~~~ 150 (175)
T smart00177 85 IFVVDSNDRDR---------IDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-----AAEITEKLGLHSIRDRNWY 150 (175)
T ss_pred EEEEECCCHHH---------HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-----HHHHHHHhCccccCCCcEE
Confidence 99999874221 11111222222211 11 12 899999864321 1222222211 12234
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+++++++|.+.
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 5689999999999999999765
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-13 Score=108.76 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=62.8
Q ss_pred ceeccccCCCce----eccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCC
Q psy17315 467 LQYFFTAGQDEV----KAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDG 542 (561)
Q Consensus 467 li~~~t~~~~ev----~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 542 (561)
|+.+||..++.. ++..+|+|+|+.|+|..||+|+.+.|.+|.||+-+- +...|++|.+|+|+||
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~------------~~~gq~Vgl~~~L~d~ 68 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSV------------KHSPQRVGLDHVLEDE 68 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCC------------cCCCeECCCCCEecCC
Confidence 588999987764 999999999999999999999999999999998663 3356999999999999
Q ss_pred CEEEEE
Q psy17315 543 DIIFFK 548 (561)
Q Consensus 543 di~~~~ 548 (561)
|||+|.
T Consensus 69 DvVeI~ 74 (75)
T cd01666 69 DVVQIV 74 (75)
T ss_pred CEEEEe
Confidence 999984
|
DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-12 Score=124.07 Aligned_cols=153 Identities=15% Similarity=0.120 Sum_probs=93.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-------CcccCCCcccccCcccc--c--------------cCCeEEEEeCCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-------AAAENFPFCTIDPNENN--K--------------VPAFLNVVDIAGLVK 153 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-------~~~~~~~~~T~~~~~~~--~--------------~~~~i~l~DtpG~~~ 153 (561)
++|+++|.+|+|||||+|+|++.. ......+|+|.+..... . ....+.+|||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 369999999999999999999731 22333556776654321 1 145789999999732
Q ss_pred CCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCcc
Q psy17315 154 GAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 154 ~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~ 230 (561)
+...+...++.+|++++|+|++... .....+.+. .......+ ++||+|+........ .
T Consensus 81 -------~~~~~~~~~~~~d~vi~VvD~~~~~-------~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~~-~ 141 (192)
T cd01889 81 -------LIRTIIGGAQIIDLMLLVVDATKGI-------QTQTAECLV----IGEILCKKLIVVLNKIDLIPEEERER-K 141 (192)
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCc-------cHHHHHHHH----HHHHcCCCEEEEEECcccCCHHHHHH-H
Confidence 2334455567889999999876311 001111111 11112223 899999874322110 1
Q ss_pred HHHHHH----Hhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 231 EGEKKM----LLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 231 ~~~l~~----l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.. .... ....+.+.+|+++|.|+..|++++.+..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 142 IEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 111211 1111 1345789999999999999999998874
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-12 Score=117.63 Aligned_cols=150 Identities=18% Similarity=0.119 Sum_probs=88.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCC---cccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFP---FCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~---~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
++|+++|.+|||||||+|++++........| ..+............+.++||||...... + ....++.+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~~ 74 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA----M---QRLSISKGH 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH----H---HHHHhhcCC
Confidence 5899999999999999999997763221111 11111000011234688999999853321 1 123457889
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc------ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
++++|+|.+.. ..++.+..+.+.+.+.. .+ |+||+|+.+...... ....... .....
T Consensus 75 ~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~-~~~~~ 140 (165)
T cd04140 75 AFILVYSVTSK----------QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS---NEGAACA-TEWNC 140 (165)
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH---HHHHHHH-HHhCC
Confidence 99999987532 22333333333333321 11 899999975322211 1111111 11223
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+++|.|+..++++|.+.
T Consensus 141 ~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 141 AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred cEEEeecCCCCCHHHHHHHHHhc
Confidence 56899999999999999999764
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=116.48 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=90.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.||+++|.||||||||+|++.+..... .++.++.+.... ... ...+.++||||...... +. ...++.+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~---~~~~~~~ 72 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA----MR---DQYMRTG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH----HH---HHHHhhC
Confidence 379999999999999999999866322 222222221111 111 23578999999754321 11 2335788
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|++..+ .++.+..+...+... ..+ ++||+|+.+..... ......+.... ..+
T Consensus 73 ~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~ 138 (164)
T smart00173 73 EGFLLVYSITDRQ----------SFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVS---TEEGKELARQW-GCP 138 (164)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEc---HHHHHHHHHHc-CCE
Confidence 9999999876321 222333222232222 112 89999997543222 12222222222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..+++++.+.
T Consensus 139 ~~~~Sa~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 139 FLETSAKERVNVDEAFYDLVRE 160 (164)
T ss_pred EEEeecCCCCCHHHHHHHHHHH
Confidence 7999999999999999999875
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.5e-12 Score=119.94 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=94.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c----ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||+|++++........|..+.+.... . .....+.+|||||..... ......+++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~ 73 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-------GMTRVYYRG 73 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-------hhHHHHhCC
Confidence 4799999999999999999997653222222222221111 1 112358899999974322 112334689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-------cch---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-------RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
+|++++|+|.+.++ .++.+..+...+... ..+ |+||+|+.+.... .......+....
T Consensus 74 a~~~ilv~D~t~~~----------s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~ 140 (201)
T cd04107 74 AVGAIIVFDVTRPS----------TFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK---DGEQMDQFCKEN 140 (201)
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc---CHHHHHHHHHHc
Confidence 99999999876322 223333333333221 111 8999999742222 223344444443
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.....+.+|+++|.|+..++.++.+...
T Consensus 141 ~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 141 GFIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3356799999999999999999998753
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=114.44 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++++++|.||||||||+|+|++... ...+.++.+........ ....+.++||||...... + ....++.+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~ 73 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT----L---TSSYYRGA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh----h---hHHHhCCC
Confidence 4799999999999999999998763 23444444332221111 124689999999643221 1 12345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+.+.+..... + ++||+|+..... .......+... ....
T Consensus 74 d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~----~~~~~~~~~~~-~~~~ 138 (161)
T cd01863 74 QGVILVYDVTRRD----------TFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREV----TREEGLKFARK-HNML 138 (161)
T ss_pred CEEEEEEECCCHH----------HHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccccc----CHHHHHHHHHH-cCCE
Confidence 9999999875321 12233333333333221 1 899999983321 12222222222 2345
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+.+++..+.+.
T Consensus 139 ~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 139 FIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEEecCCCCCHHHHHHHHHHh
Confidence 8999999999999999998764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=117.14 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=92.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--c---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--K---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.|+++|.+|+|||||+|+|++........+++|.+..... . .+..+.++||||...... .....++.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~-------~~~~~~~~~ 74 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-------MRARGASLT 74 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH-------HHHHHHhhc
Confidence 5899999999999999999987754455567776543221 1 145799999999743221 112235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh-----cCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR-----VGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~-----~~~~ 244 (561)
|++++|+|++... .......+. .+.....+ ++||+|+..... ......+...... ....
T Consensus 75 d~il~v~d~~~~~-------~~~~~~~~~----~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd01887 75 DIAILVVAADDGV-------MPQTIEAIK----LAKAANVPFIVALNKIDKPNANP--ERVKNELSELGLQGEDEWGGDV 141 (168)
T ss_pred CEEEEEEECCCCc-------cHHHHHHHH----HHHHcCCCEEEEEEceecccccH--HHHHHHHHHhhccccccccCcC
Confidence 9999999886321 011111111 12223333 899999873210 0011112222111 1235
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+.+|.|+..|++++.+.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 142 QIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred cEEEeecccCCCHHHHHHHHHHh
Confidence 78999999999999999999775
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.7e-12 Score=114.44 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=89.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|++++.... ..++.++.+.... ...+ ..+.+|||||...... + ....++.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----l---~~~~~~~~ 73 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA----M---RDQYMRTG 73 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH----H---HHHHHhcC
Confidence 57999999999999999999976622 1222222221111 1111 2477899999743221 1 22346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.. ..++.++.+...+.... .+ |+||+|+.++.. .......+.... ..+
T Consensus 74 ~~~i~v~~~~~~----------~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~-~~~ 138 (162)
T cd04138 74 EGFLCVFAINSR----------KSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV----SSRQGQDLAKSY-GIP 138 (162)
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee----cHHHHHHHHHHh-CCe
Confidence 999999976521 12333433333333321 12 899999975311 122222222222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..++.++.+.
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred EEEecCCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=117.17 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccC--CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+++++|.+|||||||+++|++........+..+.+.... ...+ ..+.++||||...... .....++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~ 79 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS-------ITQSYYRS 79 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHHHhcC
Confidence 36899999999999999999997653333333333222111 1112 3578899999743221 11234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+..+ .+..+..+...+...... ++||+|+......... ....+. ......
T Consensus 80 ~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~---~~~~~~-~~~~~~ 145 (169)
T cd04114 80 ANALILTYDITCEE----------SFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQ---RAEEFS-DAQDMY 145 (169)
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHH---HHHHHH-HHcCCe
Confidence 99999999875311 122222233333332221 8999998754333221 112222 223356
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+.+|.|...+++++...
T Consensus 146 ~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 146 YLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999864
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-13 Score=146.89 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=97.9
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+..-..|.++|.+|+|||||+|.|++..+..++++++ |++|... +...+..+.+|||||+.+..+.-....
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfT--Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg------ 227 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFT--TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLG------ 227 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcc--cccceEEEEEECCeEEEEEECCCCccccchhhHHH------
Confidence 4555789999999999999999999987766666552 3466654 334456799999999843211100000
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHH--HHHHHhhh----------hccCCce
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNAD--IEHLNKLN----------LLTAKTQ 387 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e--~~~l~~~~----------~l~~kP~ 387 (561)
.+++ +++.+++++++|+|.... ...+ ..+.+.+ ...|..+. .+..+|+
T Consensus 228 --~~fL--------------rhieradvLv~VVD~s~~---e~~r-dp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~ 287 (500)
T PRK12296 228 --LDFL--------------RHIERCAVLVHVVDCATL---EPGR-DPLSDIDALEAELAAYAPALDGDLGLGDLAERPR 287 (500)
T ss_pred --HHHH--------------HHHHhcCEEEEEECCccc---cccc-CchhhHHHHHHHHHHhhhcccccchhhhhcCCCE
Confidence 0111 123344555555543210 0000 0111100 01121111 2357999
Q ss_pred EEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 388 IYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 388 iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
|+|+||+|. .+ .....+.+.+.+... +.++++|||+++.|+.+|.....+.+
T Consensus 288 IVVlNKiDL--~d-a~el~e~l~~~l~~~--g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 288 LVVLNKIDV--PD-ARELAEFVRPELEAR--GWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred EEEEECccc--hh-hHHHHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999954 32 222334444444433 56899999999999999876655443
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=114.21 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
++|+++|.+|||||||+|+|++........|......... ......+.++||||...... +. ...++.+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----~~---~~~~~~~~ 73 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----LR---PLSYPNTD 73 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----cc---hhhcCCCC
Confidence 4799999999999999999998764222222111110000 11123588999999864321 11 12347899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCC--------CccHHHHHHHhhh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPK--------KTDEGEKKMLLGR 240 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~--------~~~~~~l~~l~~~ 240 (561)
++++|+|.+..+ ........+...+.... .+ |+||+|+.+..... .............
T Consensus 74 ~~i~v~d~~~~~---------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 74 VFLICFSVDSPS---------SFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred EEEEEEECCCHH---------HHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 999999875311 11111111222222222 22 89999998654321 1112233333333
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
......+.+|+++|.|+..+++++.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 44447899999999999999998864
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-12 Score=115.40 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=91.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+|++++|.+|||||||+|+|.+........+.++...... . .....+.++||||...... +... .++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~---~~~~~ 73 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA----LGPI---YYRDA 73 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH----hhHH---HhccC
Confidence 4799999999999999999998763322222222221111 1 1123588999999643221 1122 24789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .++.+..+...+..... + ++||+|+....... ......+... .....
T Consensus 74 ~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~---~~~~~~~~~~-~~~~~ 139 (162)
T cd04123 74 DGAILVYDITDAD----------SFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS---KSEAEEYAKS-VGAKH 139 (162)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC---HHHHHHHHHH-cCCEE
Confidence 9999999875322 22333333333333322 2 89999998543322 2223333222 23456
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|++.+++++.+.
T Consensus 140 ~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 140 FETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 899999999999999999764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-13 Score=145.81 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=30.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTI 131 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~ 131 (561)
+.++++|.+|+|||||+|+|.|.. ..+++.|.+|.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 789999999999999999999988 56667777665
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-12 Score=116.82 Aligned_cols=140 Identities=17% Similarity=0.129 Sum_probs=83.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
||+++|.||||||||+|+|++.... ++. |.. .... ..++||||..... ..+.......++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~~----~~~~--~~~iDt~G~~~~~---~~~~~~~~~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQA----VEYN--DGAIDTPGEYVEN---RRLYSALIVTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-cee----EEEc--CeeecCchhhhhh---HHHHHHHHHHhhcCCEEEE
Confidence 6999999999999999999987532 111 111 1111 2689999973211 1111122235789999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCH
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGK 257 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gk 257 (561)
|+|++....... . .+.+.+.....-++||+|+.+... ...............+.+.+|+++|.|+
T Consensus 69 v~d~~~~~s~~~----------~-~~~~~~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 69 VQSATDPESRFP----------P-GFASIFVKPVIGLVTKIDLAEADV----DIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred EecCCCCCcCCC----------h-hHHHhccCCeEEEEEeeccCCccc----CHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 999864332110 0 111111111111889999874211 1222333333333346789999999999
Q ss_pred HHHHHHHH
Q psy17315 258 STFFNVLT 265 (561)
Q Consensus 258 s~l~~~l~ 265 (561)
+.+++++.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-12 Score=115.95 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=91.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|++........+..+.+.... ... ...+.++||||...... .....++.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 73 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS-------ITSSYYRGA 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHhCCC
Confidence 4799999999999999999998764333333333322111 111 13688999999642221 112335789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+... .+..+..+...+.... .+ ++||+|+.+..... ......+.... ....
T Consensus 74 d~~ilv~d~~~~~----------s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~---~~~~~~~~~~~-~~~~ 139 (164)
T smart00175 74 VGALLVYDITNRE----------SFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS---REEAEAFAEEH-GLPF 139 (164)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC---HHHHHHHHHHc-CCeE
Confidence 9999999875311 1222222222222222 12 89999987532222 22222232222 2357
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+.+|.|+..+++++.+..
T Consensus 140 ~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 140 FETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998864
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.8e-12 Score=113.72 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCccc--CCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE--NFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~--~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|++...... +..+.+....... .....+.++||||...... .....++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~ 73 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS-------ITPSYYRGA 73 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH-------HHHHHhcCC
Confidence 4799999999999999999998874332 3333333222111 1234688999999743221 223446789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|++.. ..+..+..+...+.... .+ ++||+|....... .......+... .....
T Consensus 74 d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~-~~~~~ 139 (159)
T cd00154 74 HGAILVYDITNR----------ESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV---STEEAQQFAKE-NGLLF 139 (159)
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc---cHHHHHHHHHH-cCCeE
Confidence 999999987531 12233333333333332 22 8999999722221 22333343333 34568
Q ss_pred EEEEccCCCCHHHHHHHHHh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~ 266 (561)
+.+|+.+|.|+..+++++.+
T Consensus 140 ~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 140 FETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEEecCCCCCHHHHHHHHhC
Confidence 99999999999999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.8e-12 Score=115.09 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
||+++|.+|||||||+++|+..... ...|............+..+.++||||.....+ .+...++.+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~ii~ 72 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRP-------YWRCYYSNTDAIIY 72 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHH-------HHHHHhcCCCEEEE
Confidence 5899999999999999999765521 112211111111112345789999999853221 22344678999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhhc----CCCcEE
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GTNLKV 247 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~~~~i 247 (561)
|+|++.... .......+...+... ..+ ++||+|+.+.. ....+....... .....+
T Consensus 73 v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 73 VVDSTDRDR---------LGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-----SEAEISEKLGLSELKDRTWSIF 138 (158)
T ss_pred EEECCCHHH---------HHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-----CHHHHHHHhCccccCCCcEEEE
Confidence 998763211 000011111111111 122 89999987432 112222221111 123589
Q ss_pred EEEccCCCCHHHHHHHHHh
Q psy17315 248 GIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~ 266 (561)
.+|+++|.|+..++++|.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999999865
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.9e-12 Score=116.62 Aligned_cols=149 Identities=16% Similarity=0.076 Sum_probs=89.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|+++|.+|||||||+|+|++.. ....+..|.+.... ...+..+.++||||..... ..+...++.+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i--~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 82 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTV--QSDGFKLNVWDIGGQRAIR-------PYWRNYFENT 82 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEE--EECCEEEEEEECCCCHHHH-------HHHHHHhcCC
Confidence 346899999999999999999999875 23333344332211 1224568899999974221 1223446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhhc----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV---- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~---- 241 (561)
|++++|+|++... .+.... .+...+.. ...+ ++||+|..+.. ....+....+..
T Consensus 83 ~~ii~v~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----~~~~i~~~l~~~~~~~ 147 (173)
T cd04155 83 DCLIYVIDSADKK----------RLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-----PAEEIAEALNLHDLRD 147 (173)
T ss_pred CEEEEEEeCCCHH----------HHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-----CHHHHHHHcCCcccCC
Confidence 9999999876311 111111 11111111 1122 68999986432 122222222221
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+..+.+|+++|.|++.++++|.+
T Consensus 148 ~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 148 RTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1234678999999999999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-12 Score=118.57 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=90.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..++|.++|.+|||||||+++++... ....+..|.+. .........+.++||||..... ..+...++++|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~~-------~~~~~~~~~a~ 86 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 86 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeE--EEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCC
Confidence 34799999999999999999998654 32222222221 1111234568999999963221 12234468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHH--h-cch---hhccccccCcCCCCCccHHHHHHHhhhc----CC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD--L-RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GT 243 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~-~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~ 243 (561)
++++|+|++..+.. .+-...+...+.+ . ..+ ++||+|+.+... ...+...++.. +.
T Consensus 87 ~iI~V~D~s~~~s~---------~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~-----~~~~~~~l~l~~~~~~~ 152 (181)
T PLN00223 87 GLIFVVDSNDRDRV---------VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-----AAEITDKLGLHSLRQRH 152 (181)
T ss_pred EEEEEEeCCcHHHH---------HHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC-----HHHHHHHhCccccCCCc
Confidence 99999998743211 1111122222211 1 111 899999975432 23333333321 12
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+||++|.|+.+++++|.+..
T Consensus 153 ~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 153 WYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHH
Confidence 2345789999999999999998763
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-12 Score=114.54 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=90.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccC--CeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|+|||||+|+|.+........+++|.+..... ..+ ..+.++||||....... .. ...+++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----~~---~~~~~~ 74 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI----RR---LYYRAV 74 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH----HH---HHHhhh
Confidence 58999999999999999999988866677788887765431 222 45889999995433211 11 112344
Q ss_pred CEEEEEecccccchhhhccchhhHh-hhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIW-RNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+.++.++|....-. +..... .....+...... ..+ ++||+|+.... .................+.
T Consensus 75 ~~~i~~~d~~~~v~-----~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~ 143 (161)
T TIGR00231 75 ESSLRVFDIVILVL-----DVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-----LKTHVAFLFAKLNGEPIIP 143 (161)
T ss_pred hEEEEEEEEeeeeh-----hhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-----hhHHHHHHHhhccCCceEE
Confidence 55555554331100 011111 111111111111 112 89999997433 2223344444455567999
Q ss_pred EEccCCCCHHHHHHHHH
Q psy17315 249 IVGVPNVGKSTFFNVLT 265 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~ 265 (561)
+|+..|.|++.++++|.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999999873
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=115.17 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=89.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||++++..... +..++.++.+.... ... ...+.++||||...... +. -..++.+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----MR---DLYMKNG 73 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----HH---HHHHhhC
Confidence 5899999999999999999986542 22333333322111 111 23467999999754332 11 2245889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+... .+..+..+...+.... .+ ++||+|+.+...... .....+.... ..+
T Consensus 74 d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 139 (164)
T cd04175 74 QGFVLVYSITAQS----------TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK---EQGQNLARQW-GCA 139 (164)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH---HHHHHHHHHh-CCE
Confidence 9999999865221 1222222222222211 11 899999975433221 2222232222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+||++|.|+..++.++.+.
T Consensus 140 ~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 140 FLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999865
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=117.08 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=88.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcc--cccCccc---cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFC--TIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~--T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.++|+++|.+|||||||++++...... ...|.. +...... ......+.++||||..... ..+...++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~ 74 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------PLWKSYTR 74 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH-------HHHHHHhc
Confidence 478999999999999999999876521 123322 2111110 1123468999999974222 12233468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHH----Hhcch---hhccccccCcCCCCCccHHHHHHHhh---h
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIR----DLRRS---VDAKADSKKKMGPKKTDEGEKKMLLG---R 240 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~---~ 240 (561)
++|++++|+|++..+ .+..+......+. ....+ ++||+|+.+.. ....+..... .
T Consensus 75 ~~d~ii~v~D~~~~~----------~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~-----~~~~~~~~~~~~~~ 139 (183)
T cd04152 75 CTDGIVFVVDSVDVE----------RMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL-----SVSEVEKLLALHEL 139 (183)
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC-----CHHHHHHHhCcccc
Confidence 899999999976322 1111111111111 11122 89999986321 1222332222 1
Q ss_pred c--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 V--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
. .....+.+|+.+|.|+..++++|.+..
T Consensus 140 ~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 140 SASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred CCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 1 123467899999999999999998763
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=119.47 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=92.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||++++.+........|..+.+.... .. ....+.+|||||...... .....++.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~ 78 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-------ITSTYYRG 78 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH-------HHHHHhCC
Confidence 47899999999999999999998763222222222111110 11 113588999999643221 22345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+|++++|+|++..+ .+..+..+.+.+...... |+||+|+.+..... ......+.... ....
T Consensus 79 a~~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~---~~~~~~~~~~~-~~~~ 144 (199)
T cd04110 79 THGVIVVYDVTNGE----------SFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE---TEDAYKFAGQM-GISL 144 (199)
T ss_pred CcEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC---HHHHHHHHHHc-CCEE
Confidence 99999999876322 222232222233222111 89999997544332 22222222222 2467
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+.+|.|+..+++++....
T Consensus 145 ~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 145 FETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 8999999999999999998874
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=114.60 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=92.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|+|++.... ..+.+|.+...... ......+.+|||||...... .....++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 74 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS-------LAPMYYRGA 74 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH-------HHHHHhccC
Confidence 58999999999999999999987732 33444432221111 11223578999999642221 112346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|++..+ .+.....+.+.+.... .. ++||+|+...... .......+..... ...
T Consensus 75 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-~~~ 140 (163)
T cd01860 75 AAAIVVYDITSEE----------SFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQV---STEEAQEYADENG-LLF 140 (163)
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcC---CHHHHHHHHHHcC-CEE
Confidence 9999999876322 1222222223333322 11 7899998753322 2223333333333 468
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|++.+++++.+.
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 141 FETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-12 Score=121.01 Aligned_cols=156 Identities=17% Similarity=0.109 Sum_probs=95.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+++|++.. ....+..|.+........ ....+.|+||||...... + ....++.
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~---~~~~~~~ 85 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT----L---TSSYYRN 85 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHhc
Confidence 34799999999999999999999776 333333443322211111 123688999999754321 1 1234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHHhc----c---hhhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDLR----R---SVDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~----~---~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
+|++++|+|.+.++ .+..+.. +...+.... . -|+||+|+....... ......+.... .
T Consensus 86 ~d~~vlv~D~~~~~----------sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~---~~~~~~~~~~~-~ 151 (211)
T PLN03118 86 AQGIILVYDVTRRE----------TFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS---REEGMALAKEH-G 151 (211)
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC---HHHHHHHHHHc-C
Confidence 99999999876322 2223321 222222111 1 189999997543332 12222222221 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
...+.+|+++|.|++.++++|....+..
T Consensus 152 ~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 152 CLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 3568999999999999999999886443
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=115.69 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=98.8
Q ss_pred EEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccccc---CCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 101 IVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 101 ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
++|.+|+|||||+|+|++.. ...+..+++|......... ...+.++||||+.............+...++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 57999999999999999887 4477788888776553222 4579999999997655432222233445568899999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccC
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVP 253 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~ 253 (561)
+|+|+...... .... +.........+ +.||+|.......... ..............+.+.+|+.+
T Consensus 81 ~v~~~~~~~~~--------~~~~---~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~ 148 (163)
T cd00880 81 FVVDADLRADE--------EEEK---LLELLRERGKPVLLVLNKIDLLPEEEEEEL-LELRLLILLLLLGLPVIAVSALT 148 (163)
T ss_pred EEEeCCCCCCH--------HHHH---HHHHHHhcCCeEEEEEEccccCChhhHHHH-HHHHHhhcccccCCceEEEeeec
Confidence 99987632211 0000 12222222333 8999999743211100 00011222334566789999999
Q ss_pred CCCHHHHHHHHHhh
Q psy17315 254 NVGKSTFFNVLTKR 267 (561)
Q Consensus 254 ~~Gks~l~~~l~~~ 267 (561)
|.|+..+++++.+.
T Consensus 149 ~~~v~~l~~~l~~~ 162 (163)
T cd00880 149 GEGIDELREALIEA 162 (163)
T ss_pred cCCHHHHHHHHHhh
Confidence 99999999998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=114.29 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.||+++|.+|||||||+|+|.+.... ..+|.++...... ......+.+|||||..... ..+...++.+|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad 72 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANLAAEIRKAN 72 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HHHhhhcccCC
Confidence 37999999999999999999986632 1233221111110 1123468899999975322 12233468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcCC-CcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT-NLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~-~~~ 246 (561)
++++|+|.+..+ .+..+. .+...+... ..+ |+||+|+.+...... ....+..+...... ...
T Consensus 73 ~~ilv~d~~~~~----------s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~ 141 (166)
T cd01893 73 VICLVYSVDRPS----------TLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAG-LEEEMLPIMNEFREIETC 141 (166)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhH-HHHHHHHHHHHHhcccEE
Confidence 999999865321 122211 122222222 122 899999975443210 11222222222222 367
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|...+++.+...
T Consensus 142 ~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 142 VECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred EEeccccccCHHHHHHHHHHH
Confidence 899999999999999998765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-12 Score=114.89 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=86.3
Q ss_pred EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEE
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~V 178 (561)
|+++|.+|||||||+|+|++........|..+.+..........+.++||||..... ......++.+|++++|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii~v 74 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFR-------SMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHHhcCCEEEEE
Confidence 799999999999999999987643333343332221111223468999999974322 1123346789999999
Q ss_pred ecccccchhhhccchhhHhhhH-HHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHh-hh--cCCCcEEE
Q psy17315 179 CKEKLRNIFFISLNTITIWRNL-KLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLL-GR--VGTNLKVG 248 (561)
Q Consensus 179 vD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~-~~--~~~~~~i~ 248 (561)
+|++..+ .+... ..+...+.. ...+ ++||+|+.+.... ......+. .. ......+.
T Consensus 75 ~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 75 VDAADRT----------ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV----DELIEQMNLKSITDREVSCYS 140 (159)
T ss_pred EECCCHH----------HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH----HHHHHHhCcccccCCceEEEE
Confidence 9876321 11111 111111111 1112 7899998743211 11122221 11 12245699
Q ss_pred EEccCCCCHHHHHHHHHh
Q psy17315 249 IVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~ 266 (561)
+|+++|.|+..++++|.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999999864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-12 Score=133.87 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=115.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccc----ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQ----GLGNAFLSH 168 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~----~~~~~~l~~ 168 (561)
...+..++|+|||||||++|.++..+..+.+|||||+....|. +.+..++++||||+...--+.. ...-..+++
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999887763 3456899999999984332211 111234788
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
++. ++|+++|.+ ......+..+++++...-.-.... |.||||......+.....+.++.+.+. +..
T Consensus 247 Lra--aVLYfmDLS-------e~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-~~v 316 (620)
T KOG1490|consen 247 LRS--AVLYFMDLS-------EMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-GNV 316 (620)
T ss_pred hhh--hheeeeech-------hhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc-cCc
Confidence 884 489999865 223344555666554432222222 899999998777766555556655443 335
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+-.|+.+-.|+-++.+.-++++
T Consensus 317 ~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 317 KVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred eEEEecccchhceeeHHHHHHHHH
Confidence 678899999999988776666543
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=116.50 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=91.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--c------------ccCCeEEEEeCCCcccCCccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--N------------KVPAFLNVVDIAGLVKGAAEGQGLG 162 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~------------~~~~~i~l~DtpG~~~~~~~~~~~~ 162 (561)
+||+++|.+|||||||+|++.+........|..+.+.... . .....+.+|||||......
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------ 78 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS------ 78 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH------
Confidence 6899999999999999999987653222122111111100 0 1123588999999643221
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
.....++++|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+...... ....
T Consensus 79 -~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~---~~~~ 144 (180)
T cd04127 79 -LTTAFFRDAMGFLLIFDLTNEQ----------SFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE---EQAK 144 (180)
T ss_pred -HHHHHhCCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH---HHHH
Confidence 1233468899999999876322 2222322222232211 11 899999975433322 2233
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+..... .+.+.+|+++|.|+.+++++|.+..
T Consensus 145 ~~~~~~~-~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 145 ALADKYG-IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3332222 3679999999999999999998753
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-12 Score=119.02 Aligned_cols=152 Identities=17% Similarity=0.102 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccC----------------CCcccccCccc--cccCCeEEEEeCCCcccCCcccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAEN----------------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~----------------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~ 159 (561)
+|+++|.+|+|||||+|+|++....... ..++|.+.... ......+.++||||.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4899999999999999999987622211 23344433221 1123468999999975322
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
..+...++.+|++++|+|+.... .. ..... ...+.....+ ++||+|+........ ....+..
T Consensus 77 ---~~~~~~~~~~d~~i~v~d~~~~~-------~~---~~~~~-~~~~~~~~~~i~iv~nK~D~~~~~~~~~-~~~~~~~ 141 (189)
T cd00881 77 ---SEVIRGLSVSDGAILVVDANEGV-------QP---QTREH-LRIAREGGLPIIVAINKIDRVGEEDLEE-VLREIKE 141 (189)
T ss_pred ---HHHHHHHHhcCEEEEEEECCCCC-------cH---HHHHH-HHHHHHCCCCeEEEEECCCCcchhcHHH-HHHHHHH
Confidence 22344567899999999875311 00 00111 1112222222 899999985221110 1111222
Q ss_pred Hhhhc-------------CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 237 LLGRV-------------GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~-------------~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..... ...+.+.+|++.|.|.+.+++++....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 142 LLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 22221 246678999999999999999998874
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=113.64 Aligned_cols=151 Identities=16% Similarity=0.097 Sum_probs=92.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||++++.+........|..+.+.... . .....+.+|||||...... + ....++.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~ 77 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS----L---RTPFYRG 77 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH----h---HHHHhcC
Confidence 47899999999999999999997663332223222221110 1 1123578999999643221 1 2234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
+|++++|+|.+..+ .+..+..+...+.... .+ ++||+|+.++.. ...+...+....
T Consensus 78 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~ 143 (170)
T cd04116 78 SDCCLLTFAVDDSQ----------SFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQV----STEEAQAWCREN 143 (170)
T ss_pred CCEEEEEEECCCHH----------HHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccccc----CHHHHHHHHHHC
Confidence 99999999765322 2233333322222211 11 899999873211 223344444444
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+.+++.++.+.
T Consensus 144 ~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 144 GDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 44567999999999999999999864
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=117.79 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=90.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc-C--CeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV-P--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~-~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|+++|.+|||||||+|+|++.... ..++.++.+.... ... + ..+.+|||||...... + ....++.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA----L---RDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHHhCC
Confidence 4899999999999999999866532 2233333221110 111 1 2488999999643221 1 123468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc------ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
++++|+|.+..+ .++.+..+...+.... .+ |+||+|+.+...... .....+..... .
T Consensus 73 ~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~---~~~~~~~~~~~-~ 138 (190)
T cd04144 73 GFILVYSITSRS----------TFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST---EEGAALARRLG-C 138 (190)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH---HHHHHHHHHhC-C
Confidence 999999875322 2333333333333221 12 899999975433221 12222222222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.+|+++|.|+..+++++.+...
T Consensus 139 ~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 139 EFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999998653
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=115.57 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=88.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|+++|.+|||||||++++.... ....+..|.... ........+.++||||..... ......++.+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~a 85 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYKNLKFTMWDVGGQDKLR-------PLWRHYYQNT 85 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEECCEEEEEEECCCCHhHH-------HHHHHHhcCC
Confidence 345799999999999999999997544 222222222111 111234568999999974322 1223446899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHH--hc-ch---hhccccccCcCCCCCccHHHHHHHhhhc----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRD--LR-RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV---- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~--~~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~---- 241 (561)
|++++|+|++..+. ++.. ..+.+.+.. .. .+ ++||+|+.+... ..++....+..
T Consensus 86 d~iI~v~D~t~~~s----------~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i~~~l~~~~~~~ 150 (182)
T PTZ00133 86 NGLIFVVDSNDRER----------IGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS-----TTEVTEKLGLHSVRQ 150 (182)
T ss_pred CEEEEEEeCCCHHH----------HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC-----HHHHHHHhCCCcccC
Confidence 99999999863221 1111 112222211 11 12 899999864321 12222222211
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+.+++++|.+.
T Consensus 151 ~~~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 151 RNWYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred CcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence 11234578999999999999999875
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-12 Score=118.47 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=87.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
+|+++|.+|||||||+|+|++.. ....+..|.+.... ...+..+.++||||..... ..+..++++||+++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~--~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~a~~ii 71 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKL--RLDKYEVCIFDLGGGANFR-------GIWVNYYAEAHGLV 71 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEE--EECCEEEEEEECCCcHHHH-------HHHHHHHcCCCEEE
Confidence 47999999999999999999764 23334444432211 1234568999999964322 22345678999999
Q ss_pred EEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCcc-HHHHHHHhhhcC-CCcEE
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTD-EGEKKMLLGRVG-TNLKV 247 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~-~~~l~~l~~~~~-~~~~i 247 (561)
+|+|++..+ .+.... .+...+.. ...+ ++||+|+.+........ ...+..+..... ....+
T Consensus 72 ~V~D~s~~~----------s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 72 FVVDSSDDD----------RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIE 141 (167)
T ss_pred EEEECCchh----------HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEE
Confidence 999986321 111111 11211111 1112 89999997543211000 000111111111 23567
Q ss_pred EEEccCC------CCHHHHHHHHHh
Q psy17315 248 GIVGVPN------VGKSTFFNVLTK 266 (561)
Q Consensus 248 ~isg~~~------~Gks~l~~~l~~ 266 (561)
.+|+.+| .|+...++||..
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 7999998 899999999964
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=112.37 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=89.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||++++........ ++.++.+.... ... ...+.++||||...... + ....++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~a 73 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS----M---RDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchhheEEEEEEECCEEEEEEEEECCCcccccc----h---HHHHHhhC
Confidence 5899999999999999999987653211 12222111110 111 23578999999753332 1 22346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+..... ......+.... ..+
T Consensus 74 d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~ 139 (163)
T cd04176 74 QGFIVVYSLVNQQ----------TFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVS---SAEGRALAEEW-GCP 139 (163)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccC---HHHHHHHHHHh-CCE
Confidence 9999999876322 2233333333333321 12 89999986533221 11222222222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..++.++.+.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 140 FMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHh
Confidence 7899999999999999999864
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=116.88 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=90.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
....+|+++|.+|||||||+|+|++... ...+ |..+..+ ...+..+.++||||..... ..+...++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~~-------~~~~~~~~ 85 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQAR-------RLWKDYFP 85 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhc
Confidence 4467899999999999999999997652 2211 2222222 1224468899999964321 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhhc---
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV--- 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~--- 241 (561)
.+|++++|+|++..+. ..+....+.+.+.. ...+ ++||+|+.+. .....+.......
T Consensus 86 ~ad~iilV~D~~~~~s---------~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-----~~~~~~~~~~~~~~~~ 151 (190)
T cd00879 86 EVDGIVFLVDAADPER---------FQESKEELDSLLSDEELANVPFLILGNKIDLPGA-----VSEEELRQALGLYGTT 151 (190)
T ss_pred cCCEEEEEEECCcHHH---------HHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-----cCHHHHHHHhCccccc
Confidence 8999999998763211 11111122222211 1122 8999998641 1223344433321
Q ss_pred ------------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 ------------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ------------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+.+++++|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 12346999999999999999999763
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-13 Score=105.49 Aligned_cols=61 Identities=33% Similarity=0.474 Sum_probs=52.3
Q ss_pred cccCCCce--eccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEE
Q psy17315 471 FTAGQDEV--KAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 548 (561)
Q Consensus 471 ~t~~~~ev--~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~ 548 (561)
||.+.+.+ ++|++|+|+|+.|+|+.||+|+.++|++|.++ | ..|++|++|+|+|||||+|.
T Consensus 13 ~~~~~~~~~~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~--------------k---~~~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 13 LTDKEGNVLPDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA--------------R---TGRRVGEDYELKHRDVIKIV 75 (76)
T ss_pred ccCCCCCCccceEEECCCCCHHHHHHHHHHHHHhcceeeEEe--------------e---CCEEeCCCcEecCCCEEEEe
Confidence 45544555 99999999999999999999999999999642 2 26999999999999999984
|
Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=117.17 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|.++|.+|||||||++++........-.|..+.+.... ... ...+.+|||||...... ..-..+++|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-------l~~~y~~~a 73 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-------ITSAYYRSA 73 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-------HHHHHhcCC
Confidence 3689999999999999999987653221112222221111 111 24688999999754331 123456899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.++ .++.+..+.+.+...... |+||+|+.+..... ......+.........
T Consensus 74 d~iIlVfDvtd~~----------Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~---~~~~~~~a~~~~~~~~ 140 (202)
T cd04120 74 KGIILVYDITKKE----------TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIS---RQQGEKFAQQITGMRF 140 (202)
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC---HHHHHHHHHhcCCCEE
Confidence 9999999987433 233333333333332211 89999997533322 1222222222223457
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+||++|.|+..+|.++.+..
T Consensus 141 ~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 141 CEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998864
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=115.48 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=88.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCc---------------ccCCCcccccCcccc-------ccCCeEEEEeCCCcccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAA---------------AENFPFCTIDPNENN-------KVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~---------------~~~~~~~T~~~~~~~-------~~~~~i~l~DtpG~~~~~ 155 (561)
+|+++|.+|||||||+|+|++.... .....|+|....... .....+.+|||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 5899999999999999999874310 011234444332211 113357899999986432
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEG 232 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~ 232 (561)
. .....++.+|++++|+|++... .....+.+ . .+.....+ ++||+|+.+... .....
T Consensus 82 ~-------~~~~~~~~ad~~i~v~D~~~~~-------~~~~~~~~---~-~~~~~~~~iiiv~NK~Dl~~~~~--~~~~~ 141 (179)
T cd01890 82 Y-------EVSRSLAACEGALLLVDATQGV-------EAQTLANF---Y-LALENNLEIIPVINKIDLPSADP--ERVKQ 141 (179)
T ss_pred H-------HHHHHHHhcCeEEEEEECCCCc-------cHhhHHHH---H-HHHHcCCCEEEEEECCCCCcCCH--HHHHH
Confidence 1 2234568899999999876321 01111111 1 11112222 999999864210 00111
Q ss_pred HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 233 EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 233 ~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+...... .....+.+|+++|.|++.|++++.+..
T Consensus 142 ~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 142 QIEDVLGL-DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHhCC-CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 22222221 223579999999999999999998763
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=115.85 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=91.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCc-cccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPN-ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~-~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.+|||||||++++.+.... ..+..+.+.... ........+.+|||||...... + ....++.+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----l---~~~~~~~~ 77 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA----M---RDQYMRTG 77 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh----h---HHHHhhcC
Confidence 478999999999999999999976521 112112111100 0001122477899999754332 1 22346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .++.+..+...+..... + ++||+|+.+..... ........... ..+
T Consensus 78 d~iilv~D~s~~~----------s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~---~~~~~~~~~~~-~~~ 143 (189)
T PTZ00369 78 QGFLCVYSITSRS----------SFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS---TGEGQELAKSF-GIP 143 (189)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC---HHHHHHHHHHh-CCE
Confidence 9999999876322 23333333333333221 1 89999986432222 11222222222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++.+..
T Consensus 144 ~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 144 FLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=112.67 Aligned_cols=151 Identities=18% Similarity=0.122 Sum_probs=90.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.||+++|.+|||||||+|++..... ...+..+........ ......+.++||||..... .+.. ..++.+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~~---~~~~~~ 73 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG----GLRD---GYYIGG 73 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc----cccH---HHhcCC
Confidence 3799999999999999999986542 222222222211110 1122468899999975332 1222 235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|.+..+ .+..+..+...+.... .+ ++||+|+.+.... ... ..+. .......+
T Consensus 74 d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~----~~~-~~~~-~~~~~~~~ 137 (166)
T cd00877 74 QCAIIMFDVTSRV----------TYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK----AKQ-ITFH-RKKNLQYY 137 (166)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC----HHH-HHHH-HHcCCEEE
Confidence 9999999876322 2222222222232222 22 8999999733211 111 1121 12345689
Q ss_pred EEEccCCCCHHHHHHHHHhhccC
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.+|+++|.|+..++++|.+....
T Consensus 138 e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 138 EISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999987644
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=118.75 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=93.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c----ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||+|+|++........|..+.+.... . .....+.++||||...... .....+++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 75 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS-------ITRSYYRN 75 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH-------HHHHHhcC
Confidence 6899999999999999999998763222223333222111 0 1123688999999643221 12345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-c---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-R---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .++.+..+...+.... . . ++||+|+.+..... ......+....+ .
T Consensus 76 ~d~iilv~D~~~~~----------Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~-~ 141 (211)
T cd04111 76 SVGVLLVFDITNRE----------SFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT---REEAEKLAKDLG-M 141 (211)
T ss_pred CcEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC---HHHHHHHHHHhC-C
Confidence 99999999876322 2233333223222221 1 1 78999997543322 222233333333 5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.+|+++|.|+..++++|.+..+
T Consensus 142 ~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 142 KYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999998653
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=114.46 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=91.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.||||||||+|++++.....+++..++...... ...+ ..+.+|||||...... +. -..++.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~~~ 73 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA----MS---RIYYRG 73 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh----hh---HhhcCC
Confidence 4799999999999999999998764333333222111100 1111 2467999999743221 11 123578
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCC-CCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMG-PKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~-~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.. ..++.+..+.+.+.... .+ |+||+|+.+... ...........+.... ...
T Consensus 74 ~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-~~~ 142 (193)
T cd04118 74 AKAAIVCYDLTDS----------SSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-KAQ 142 (193)
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-CCe
Confidence 9999999987532 12222222223333221 12 999999864321 1111112233332222 245
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+|+++|.|++.|++++.+...
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=114.01 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=91.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
++|+++|.+|||||||++++.+........|........... ....+.++||||...... + ....++.+|
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----l---~~~~~~~~d 75 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA----M---RDQYMRCGE 75 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH----H---hHHHhhcCC
Confidence 689999999999999999998765321111111101100011 123588999999754331 2 223467899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.++ .++.+..+...+.... .+ |+||+|+.+...... .....+.... ..+.
T Consensus 76 ~~ilv~d~~~~~----------Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~---~~~~~~a~~~-~~~~ 141 (172)
T cd04141 76 GFIICYSVTDRH----------SFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT---EEGRNLAREF-NCPF 141 (172)
T ss_pred EEEEEEECCchh----------HHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH---HHHHHHHHHh-CCEE
Confidence 999999876322 2233332333333321 12 899999875433321 1222222222 3467
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+++|.|+..+++++.+...
T Consensus 142 ~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 142 FETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred EEEecCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999997643
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=112.37 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=90.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||++++.+........|..+.+.... .. ....+.++||||...... .....++.+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~~~~ 73 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYYRRA 73 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHhcCC
Confidence 3799999999999999999997763322223222221111 11 123578999999643221 122346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.++ .++.+..+.+.+..... . |+||+|+.+...........+.. ... -..
T Consensus 74 ~~~i~v~d~~~~~----------sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~---~~~-~~~ 139 (161)
T cd04117 74 QGIFLVYDISSER----------SYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAK---EYG-MDF 139 (161)
T ss_pred cEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH---HcC-CEE
Confidence 9999999876322 23333333333333221 1 89999987544333222222222 222 346
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..++.+|.+.
T Consensus 140 ~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 140 FETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHhh
Confidence 999999999999999999764
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=115.42 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=92.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
++|+++|.+|||||||+|++.+.... ..+..|.+..... ... ...+.++||||...... .....+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~~~ 72 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKT-VYIENKIIKLQIWDTNGQERFRS-------LNNSYYRG 72 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEE-EEECCEEEEEEEEECCCcHHHHh-------hHHHHccC
Confidence 47999999999999999999987633 2223332221111 111 23578999999643221 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.. ..+..+..+...+..... + ++||+|+.+....... ....+.... ...
T Consensus 73 ~d~iilv~d~~~~----------~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~---~~~~~~~~~-~~~ 138 (188)
T cd04125 73 AHGYLLVYDVTDQ----------ESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSN---IAKSFCDSL-NIP 138 (188)
T ss_pred CCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHH---HHHHHHHHc-CCe
Confidence 9999999987532 223333333333333221 1 8999999854433221 112222221 226
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+|+++|.|+..++.++.+..+
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999988753
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=111.35 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=88.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCccc--CCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE--NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~--~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||++++.+...... +..+.+...... ......+.+|||||...... .....++.+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 73 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-------MHASYYHKA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHhCCC
Confidence 4799999999999999999987653221 111222111000 11123588999999753321 123446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|.+... .+..+..+...+.... .+ ++||+|+.+. .......+... ...+.+
T Consensus 74 d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~~-~~~~~~ 136 (161)
T cd04124 74 HACILVFDVTRKI----------TYKNLSKWYEELREYRPEIPCIVVANKIDLDPS------VTQKKFNFAEK-HNLPLY 136 (161)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCcEEEEEECccCchh------HHHHHHHHHHH-cCCeEE
Confidence 9999999875321 2223333333333221 12 9999998521 11111111111 234678
Q ss_pred EEEccCCCCHHHHHHHHHhhc
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+|+++|.|+..+++.+.+..
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 137 YVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998753
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=113.44 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=92.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcc-ccc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-NNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~-~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||++++.+........|....+... ... ....+.+|||+|...... + ....++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~----~---~~~~~~~a 73 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN----M---LPLVCNDA 73 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH----h---hHHHCcCC
Confidence 479999999999999999998765321112211111110 011 123689999999753321 1 12356899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-----hhhccccccCcCCCCC--ccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-----SVDAKADSKKKMGPKK--TDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~v~NK~D~~~~~~~~~--~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.++ .+..+..+..++..... -|+||+|+........ ........+..... ..
T Consensus 74 ~~iilv~D~t~~~----------s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~ 142 (182)
T cd04128 74 VAILFMFDLTRKS----------TLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-AP 142 (182)
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcC-CE
Confidence 9999999876432 22233222223322211 1899999964321111 01122222322222 46
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.+.+|+++|.|++.+++++.+..+.
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999987654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=112.56 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=88.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCccc-ccC--ccc-c--ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCT-IDP--NEN-N--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T-~~~--~~~-~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
++|+++|.+|||||||+++|.... .....+..++ .+. ... . .....+.+|||||..... .+. ...+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~---~~~~ 73 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS----DMV---SNYW 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH----HHH---HHHh
Confidence 479999999999999999998542 1222222111 111 000 0 112468999999964322 111 2345
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+++|++++|+|.+..+ .++.+..+.+.+.... .+ |+||+|+.+...... .....+... ...
T Consensus 74 ~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~-~~~ 139 (164)
T cd04101 74 ESPSVFILVYDVSNKA----------SFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTD---AQAQAFAQA-NQL 139 (164)
T ss_pred CCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCH---HHHHHHHHH-cCC
Confidence 8899999999876321 2233333333333322 22 899999975433221 111222111 123
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+.+|.|+..+++.+.+.
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 140 KFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred eEEEEeCCCCCChHHHHHHHHHH
Confidence 57899999999999999998765
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-12 Score=115.08 Aligned_cols=157 Identities=20% Similarity=0.121 Sum_probs=95.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcc------cccccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAE------GQGLGNAFLSHI 169 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~------~~~~~~~~l~~i 169 (561)
.|+++|.+|+|||||+|+|++.. ...++.+++|..... ......+.++||||+...... -..+...++...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF-FNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE-EEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 38999999999999999999433 667888888876543 333448999999998543210 011112233333
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhh-hcCCCc
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLG-RVGTNL 245 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~-~~~~~~ 245 (561)
.+++++++|+|..... . .....+...+.....+ +.||+|........ .....+..... ......
T Consensus 80 ~~~~~~~~v~d~~~~~--------~---~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~ 147 (170)
T cd01876 80 ENLKGVVLLIDSRHGP--------T---EIDLEMLDWLEELGIPFLVVLTKADKLKKSELA-KALKEIKKELKLFEIDPP 147 (170)
T ss_pred hhhhEEEEEEEcCcCC--------C---HhHHHHHHHHHHcCCCEEEEEEchhcCChHHHH-HHHHHHHHHHHhccCCCc
Confidence 5678899999764210 0 0001122334433333 89999996321110 01111222222 234557
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|++++.|...++++|.+.
T Consensus 148 ~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 148 IILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred eEEEecCCCCCHHHHHHHHHHh
Confidence 7899999999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-11 Score=110.31 Aligned_cols=150 Identities=18% Similarity=0.112 Sum_probs=89.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-c---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-K---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|+..... ..+.+++.+..... . ....+.++||||...... + .-..++.+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~~ 72 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA----I---RDNYHRSG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH----H---HHHHhhcC
Confidence 37999999999999999999976522 23333333221111 1 123588999999753321 1 12345788
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|.+++|+|.... ..+..+..+...+... ..+ |+||+|+...... .......+.... ..+
T Consensus 73 ~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~---~~~~~~~~~~~~-~~~ 138 (164)
T cd04139 73 EGFLLVFSITDM----------ESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV---SSEEAANLARQW-GVP 138 (164)
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc---CHHHHHHHHHHh-CCe
Confidence 999999976421 1222233222222222 122 9999999752111 122222222222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|++.+++.+.+..
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 139 YVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998763
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-11 Score=110.85 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=104.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-----CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-----AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-----~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...|+.++|..|||||||+-+....+ .++-...|.|+..... .....+.+|||+|.....+ +.. -++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQERy~s----lap---MYy 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQERYHS----LAP---MYY 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCcccccc----ccc---cee
Confidence 34789999999999999999998655 2233445555543221 1123688999999976442 222 346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---------hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---------VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---------v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
|+|+++|+|.|.+..+ .+..+.+++.++.+. ++||+|+.........+...+.+-
T Consensus 76 RgA~AAivvYDit~~~-------------SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~--- 139 (200)
T KOG0092|consen 76 RGANAAIVVYDITDEE-------------SFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAES--- 139 (200)
T ss_pred cCCcEEEEEEecccHH-------------HHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHh---
Confidence 9999999999886422 333344444444433 899999997555543333333222
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~ 273 (561)
.....+..|+++|.|+..++..|.++.+....
T Consensus 140 -~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 140 -QGLLFFETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred -cCCEEEEEecccccCHHHHHHHHHHhccCccc
Confidence 34477999999999999999999999765543
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-11 Score=115.91 Aligned_cols=154 Identities=16% Similarity=0.080 Sum_probs=96.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.++||||||++++..........|..+.+.... .. ....+.+|||||...... .+...++.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------l~~~~~~~ 78 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT-------IFRSYSRG 78 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHhcC
Confidence 47999999999999999999997552211111122221111 11 124688999999853331 12344689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+|++++|+|.+.+ ..++++..+.+++...... |+||+|+.+..... ..+...+.... ....
T Consensus 79 ad~illVfD~t~~----------~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~---~~~~~~~a~~~-~~~~ 144 (189)
T cd04121 79 AQGIILVYDITNR----------WSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA---TEQAQAYAERN-GMTF 144 (189)
T ss_pred CCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC---HHHHHHHHHHc-CCEE
Confidence 9999999987632 2344444444444332222 89999997543332 22233333322 3468
Q ss_pred EEEEccCCCCHHHHHHHHHhhccC
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
+.+|+++|.|+..+|.++.+....
T Consensus 145 ~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 145 FEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999986543
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-11 Score=112.75 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=91.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc----cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|++.+........|....+...... ....+.++||||...... + ....++.+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~a 73 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR----L---RPLSYPDV 73 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH----H---HHHhCCCC
Confidence 479999999999999999999876332222222111111111 123588999999643221 1 11245889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCCCC-CccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMGPK-KTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~~~-~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+. .+...+.... .+ |+||+|+.+..... .........+........
T Consensus 74 d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (187)
T cd04132 74 DVLLICYAVDNPT----------SLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFA 143 (187)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcE
Confidence 9999999876322 122221 1111222111 12 89999987543211 112233344433344446
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++.+.+..
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998874
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=111.70 Aligned_cols=148 Identities=21% Similarity=0.213 Sum_probs=92.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc---CCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|+++|.+|||||||+|+|++.. ....++.++.+..... .. ...+.++|+||...... .....++.+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA-------MRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHHhcCC
Confidence 58999999999999999999776 3333444444332221 11 23588999999754221 1123457889
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.. ..+..+..+...+..... + ++||+|..+..... ............ .+.
T Consensus 73 ~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~-~~~ 138 (160)
T cd00876 73 GFILVYSITDR----------ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS---KEEGKALAKEWG-CPF 138 (160)
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec---HHHHHHHHHHcC-CcE
Confidence 99999986521 122233333333333222 2 89999998633222 222222222222 567
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..++++|...
T Consensus 139 ~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 139 IETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEeccCCCCCHHHHHHHHHhh
Confidence 999999999999999999764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-13 Score=133.61 Aligned_cols=200 Identities=18% Similarity=0.201 Sum_probs=107.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.|++.|.+|+|||+|+|.|++.. .+.+++.++|| +++..+.. .+.++.||||||+.+....+...+.+....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~--~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~---- 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK--ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARS---- 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHH----
Confidence 58899999999999999999984 34556666665 33334322 235689999999854322222211100000
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
.+..+|++..|+|.. .....+..++..+.. ..+|+++|+||+|. .. ..
T Consensus 76 -----------------~l~~aDvvl~VvD~~-----------~~~~~~~~i~~~l~~-~~~p~ilV~NK~Dl--~~-~~ 123 (270)
T TIGR00436 76 -----------------AIGGVDLILFVVDSD-----------QWNGDGEFVLTKLQN-LKRPVVLTRNKLDN--KF-KD 123 (270)
T ss_pred -----------------HHhhCCEEEEEEECC-----------CCCchHHHHHHHHHh-cCCCEEEEEECeeC--CC-HH
Confidence 011223333332211 011111222332222 47899999999954 32 22
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH-------Hhccc-c---hHHHHHH-HHHcccCceecc
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD-------EQKAT-S---VLDKIIT-QGYKSLQLQYFF 471 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~-------~~~~~-~---~l~~li~-~~~~~l~li~~~ 471 (561)
...+.+.++.... +..+++++||++|.|+++|.+...+.+.+ ++... + ....+++ .+|..++=-..|
T Consensus 124 ~~~~~~~~~~~~~-~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~ 202 (270)
T TIGR00436 124 KLLPLIDKYAILE-DFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPH 202 (270)
T ss_pred HHHHHHHHHHhhc-CCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCc
Confidence 2333444443322 24579999999999999987665443211 11111 1 1223333 355554444445
Q ss_pred ccCCCceeccccCC
Q psy17315 472 TAGQDEVKAWTIQK 485 (561)
Q Consensus 472 t~~~~ev~a~~~~~ 485 (561)
... -++..|....
T Consensus 203 ~~~-~~~~~~~~~~ 215 (270)
T TIGR00436 203 SVR-VEIERKSFNE 215 (270)
T ss_pred eEE-EEEEEEEECC
Confidence 554 5668887754
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=111.64 Aligned_cols=153 Identities=17% Similarity=0.083 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
||+++|.+|||||||++++.+......-.|....+.... . .....+.+|||||...... .....++.+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ad 74 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC-------IASTYYRGAQ 74 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh-------hHHHHhcCCC
Confidence 689999999999999999998753222122222221111 1 1123689999999854321 1234468999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHH-Hhcc------hhhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIR-DLRR------SVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~------~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|++.. ..+..+..+...+. .... -|+||+|+.+...... .......+..... ...
T Consensus 75 ~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~-~~~~~~~~~~~~~-~~~ 142 (170)
T cd04108 75 AIIIVFDLTDV----------ASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYAL-MEQDAIKLAAEMQ-AEY 142 (170)
T ss_pred EEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccc-cHHHHHHHHHHcC-CeE
Confidence 99999987532 22233333332222 2111 1899999865432211 1122222222222 356
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+.+|.|+..+++.+.+..+
T Consensus 143 ~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 143 WSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999988753
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=129.01 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=85.9
Q ss_pred CCceEEEeccCCCCCCCCccccCC-Ccccchhhh-hcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNP-KIPRSNQIL-ISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMG 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~-~l~~~~~~~-~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~ 77 (561)
+.+|-|.|+..| .. ++ .++++.... ..+.|.+ +||++++..+.|.++++..+..+ +++..+.+
T Consensus 91 D~vLlV~d~~~p------~~--~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~G 162 (352)
T PRK12289 91 DQILLVFALAEP------PL--DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIG 162 (352)
T ss_pred CEEEEEEECCCC------CC--CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence 346778888777 21 22 233311111 1244444 99999888899999888777655 56666654
Q ss_pred CCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-------ccccCccccccCCeEEEEeCC
Q psy17315 78 PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-------CTIDPNENNKVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-------~T~~~~~~~~~~~~i~l~Dtp 149 (561)
..... .... +..++++|.||||||||||+|.+.. ..++..++ ||++... ...+.+.+|+|||
T Consensus 163 I~eL~--------~~L~-~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l-~~l~~g~~liDTP 232 (352)
T PRK12289 163 LEALL--------EQLR-NKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL-FELPNGGLLADTP 232 (352)
T ss_pred HHHHh--------hhhc-cceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE-EECCCCcEEEeCC
Confidence 43211 1111 1248999999999999999999876 77888888 6766533 3344456999999
Q ss_pred CcccCC
Q psy17315 150 GLVKGA 155 (561)
Q Consensus 150 G~~~~~ 155 (561)
|+..+.
T Consensus 233 G~~~~~ 238 (352)
T PRK12289 233 GFNQPD 238 (352)
T ss_pred Cccccc
Confidence 997544
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=111.72 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|.++|++|+||||+++.|.... ..+.|.-|...... ...+..+.++|.+|-.... ..+-..+.++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i--~~~~~~~~~~d~gG~~~~~-------~~w~~y~~~~ 82 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEI--KYKGYSLTIWDLGGQESFR-------PLWKSYFQNA 82 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEE--EETTEEEEEEEESSSGGGG-------GGGGGGHTTE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCccccccccee--eeCcEEEEEEecccccccc-------ccceeecccc
Confidence 456899999999999999999998765 33333333332211 2234579999999964322 2334456789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhh--h---c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLG--R---V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~--~---~ 241 (561)
|++++|+|++..+ ...+....+.+.+.... .+ ++||+|..+.. ...++...+. . .
T Consensus 83 ~~iIfVvDssd~~---------~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-----~~~~i~~~l~l~~l~~~ 148 (175)
T PF00025_consen 83 DGIIFVVDSSDPE---------RLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-----SEEEIKEYLGLEKLKNK 148 (175)
T ss_dssp SEEEEEEETTGGG---------GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-----THHHHHHHTTGGGTTSS
T ss_pred ceeEEEEecccce---------eecccccchhhhcchhhcccceEEEEeccccccCcc-----hhhHHHhhhhhhhcccC
Confidence 9999999987422 12222223333222211 11 78999998542 2333333322 1 2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+.+|.|+.+.++||.+.
T Consensus 149 ~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 149 RPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp SCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CceEEEeeeccCCcCHHHHHHHHHhc
Confidence 45567899999999999999999874
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-11 Score=116.09 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=88.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
++|+++|.+|||||||++++.+..... ..|....+..........+.+|||||...... +.. ..++.+|+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~----l~~---~~~~~ad~~I 72 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHG----LGS---MYCRGAAAVI 72 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchh----hHH---HHhccCCEEE
Confidence 479999999999999999999776321 12211111111012234689999999754332 222 2368999999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHh-cc--h---hhccccccCcCC----------------CCCccHHHH
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RR--S---VDAKADSKKKMG----------------PKKTDEGEK 234 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~--~---v~NK~D~~~~~~----------------~~~~~~~~l 234 (561)
+|+|.+.++ .+..+...-..+... .. + |+||+|+.+... ...-...+.
T Consensus 73 lV~Dvt~~~----------Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 73 LTYDVSNVQ----------SLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred EEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 999876432 122222111111111 11 1 899999975110 000111122
Q ss_pred HHHhhhcC-------------CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVG-------------TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~-------------~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+-.... ..+.+.+|+++|.|+..++..+.+..
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 22211111 13568999999999999999998764
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-11 Score=112.80 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||++++++........| ++...... .. ....+.++||||...... + .......+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~ 73 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI----L---PQKYSIGI 73 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCc-chhhhEEEEEEECCEEEEEEEEECCChHhhHH----H---HHHHHhhC
Confidence 4799999999999999999997663222222 22221111 11 123578999999753221 1 11234678
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-hc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+... .++.+..+...+.. .. .+ |+||+|+...... .......+.... ...
T Consensus 74 ~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~ 139 (180)
T cd04137 74 HGYILVYSVTSRK----------SFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV---STEEGKELAESW-GAA 139 (180)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc---CHHHHHHHHHHc-CCe
Confidence 9999999876322 22222222222222 11 12 9999998753222 122223332222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++....
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 140 FLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998764
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-11 Score=111.62 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=89.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|+++|.||||||||++++..... ...++.++...... ... ...+.+|||||...... ......++.+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHHHHHHhCC
Confidence 489999999999999999986442 22333333211111 111 23588999999864211 11233468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
++++|+|.+.. ..++.+..+...+.... .+ |+||+|+.+...... .....+..... .+
T Consensus 74 ~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~~~~-~~ 139 (165)
T cd04146 74 GFVLVYSITDR----------SSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST---EEGEKLASELG-CL 139 (165)
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH---HHHHHHHHHcC-CE
Confidence 99999987632 22333333333333332 11 899999864432221 22222222222 45
Q ss_pred EEEEEccCC-CCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPN-VGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~-~Gks~l~~~l~~~ 267 (561)
.+.+|+++| .|+..+++.+.+.
T Consensus 140 ~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 140 FFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred EEEeCCCCCchhHHHHHHHHHHH
Confidence 789999999 5999999999875
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-11 Score=116.82 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=93.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+++|++........|..+.+.... .. ....+.+|||||...... .....++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~ 83 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-------ITSAYYR 83 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHHHhC
Confidence 347999999999999999999998763322223222222111 11 123688999999643221 2234468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|.+..+ .+..+..+...+..... + ++||+|+.+...... .....+... ...
T Consensus 84 ~~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~---~~~~~l~~~-~~~ 149 (216)
T PLN03110 84 GAVGALLVYDITKRQ----------TFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAE---EDGQALAEK-EGL 149 (216)
T ss_pred CCCEEEEEEECCChH----------HHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCH---HHHHHHHHH-cCC
Confidence 899999999875322 22333322222332211 1 899999864433322 122222222 245
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..+++++.+..
T Consensus 150 ~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 150 SFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998764
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=113.81 Aligned_cols=152 Identities=11% Similarity=0.105 Sum_probs=84.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
+|+++|.+|||||||++++.+........|-...........+..+.+|||||..... ..+...++++|++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad~ii~ 73 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLR-------KYWKRYLSGSQGLIF 73 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchh-------HHHHHHHhhCCEEEE
Confidence 3799999999999999999976522111121111111111234578999999974322 122345789999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHh-cch---hhccccccCcCCCCCcc-HHHHHHHhhhcCCCcEEEEEcc
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RRS---VDAKADSKKKMGPKKTD-EGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~---v~NK~D~~~~~~~~~~~-~~~l~~l~~~~~~~~~i~isg~ 252 (561)
|+|++... ...+....+.+.+... ..+ |+||+|+.......... ...+..+.. -.....+.+|++
T Consensus 74 V~D~t~~~---------s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~Sa~ 143 (164)
T cd04162 74 VVDSADSE---------RLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIAR-GRRWILQGTSLD 143 (164)
T ss_pred EEECCCHH---------HHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcC-CCceEEEEeeec
Confidence 99986322 1111111122222111 111 99999987543211000 000111111 123445778888
Q ss_pred C------CCCHHHHHHHHHh
Q psy17315 253 P------NVGKSTFFNVLTK 266 (561)
Q Consensus 253 ~------~~Gks~l~~~l~~ 266 (561)
+ +.|+..+|+.+.+
T Consensus 144 ~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 144 DDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 8 9999999988764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-11 Score=115.24 Aligned_cols=159 Identities=16% Similarity=0.075 Sum_probs=97.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+||+++|.+|||||||+++++... ....+..|++....... .....+.+|||||...... +. ...++
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~ 84 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----LR---DGYYI 84 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh----hh---HHHcc
Confidence 45799999999999999999987655 23344444443322111 1124689999999754331 11 23468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|.+.++ .+..+..+...+...... |+||+|+..+... ...+ .+.. .....
T Consensus 85 ~~~~~ilvfD~~~~~----------s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~----~~~~-~~~~-~~~~~ 148 (219)
T PLN03071 85 HGQCAIIMFDVTARL----------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQV-TFHR-KKNLQ 148 (219)
T ss_pred cccEEEEEEeCCCHH----------HHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCC----HHHH-HHHH-hcCCE
Confidence 899999999876322 223333232333322222 8999998643211 1122 1111 12335
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~ 276 (561)
.+.+|+++|.|+..+|.+|..........+.
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~~~~~~~~~~~ 179 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHcCcchhc
Confidence 6899999999999999999998765544433
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-13 Score=141.04 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hhh-hHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EII-NEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..-..|.++|.+|+|||||++.|++..+..+.++++ |.+|.... .+. +..+.+|||||+.+....- +.
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT--Tl~PnlG~v~~~~~~~~~laD~PGliega~~~--------~g 225 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT--TLVPNLGVVETDDGRSFVMADIPGLIEGASEG--------VG 225 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcc--eeceEEEEEEEeCCceEEEEECCCCccccccc--------ch
Confidence 445679999999999999999999987766666653 44665442 333 4679999999974321100 00
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHH-HH---HHhhh-hccCCceEEEecCC
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADI-EH---LNKLN-LLTAKTQIYLVNLS 394 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~-~~---l~~~~-~l~~kP~iiv~NK~ 394 (561)
....++ +++++++++++|+|.... .. ..+.++. .+ |..+. .+..+|+++|+||+
T Consensus 226 Lg~~fL--------------rhier~~llI~VID~s~~------~~-~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 226 LGHQFL--------------RHIERTRVIVHVIDMSGS------EG-RDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred HHHHHH--------------HHHhhCCEEEEEEeCCcc------cc-CChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 001111 122333444444442110 00 0011111 11 11111 12479999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
|. .. ....++.+.+ .. ..+++++||+++.|+++|.+...+.
T Consensus 285 DL--~~-~~e~l~~l~~---~l--~~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 285 DL--PE-AEENLEEFKE---KL--GPKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred CC--cC-CHHHHHHHHH---Hh--CCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 54 21 1222233332 22 3579999999999999986665443
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=108.41 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=89.5
Q ss_pred EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
|+++|.+|||||||++++.+........|........... ....+.++||||...... +. ...++.+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~---~~~~~~~d~~ 73 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR----LR---PLSYPDTDVF 73 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch----hc---hhhcCCCCEE
Confidence 5799999999999999999876332222221111111111 123588999999753321 11 1235789999
Q ss_pred EEEecccccchhhhccchhhHhhhH-HHHHHHHHHhc--ch---hhccccccCcCCC---------CCccHHHHHHHhhh
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLR--RS---VDAKADSKKKMGP---------KKTDEGEKKMLLGR 240 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~--~~---v~NK~D~~~~~~~---------~~~~~~~l~~l~~~ 240 (561)
++|+|.+..+ .+..+ +.+...+.... .+ |+||+|+...... ......+...+...
T Consensus 74 ilv~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 74 LICFSVDSPA----------SFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred EEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 9999875322 22222 12222332221 12 8999999753210 00112223334444
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+....+.+|+++|.|+..+++.+.+..
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4444678999999999999999998753
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=108.50 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=90.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||++++.+.... ..+..++...... .. ....+.+|||||...... +.. ..++.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~---~~~~~~ 73 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA----MRE---LYIKSG 73 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh----hhH---HHHhhC
Confidence 57999999999999999999876622 1122222111110 11 113578999999754332 222 235778
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|.+++|+|.+..+ .++.+..+...+.... .+ ++||+|....... .......+......-+
T Consensus 74 ~~~vlv~~~~~~~----------s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 140 (168)
T cd04177 74 QGFLLVYSVTSEA----------SLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQV---SREDGVSLSQQWGNVP 140 (168)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCcc---CHHHHHHHHHHcCCce
Confidence 9999999765322 2222322333332211 11 8999998744322 1222233333333346
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++..+.
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=108.77 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=90.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcc-c-ccc-C--CeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-N-NKV-P--AFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~-~-~~~-~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...+|+++|.+|||||||++++++....+..+..++..... . ... + ..+.++||+|...... .....+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~ 75 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------LNDAEL 75 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------cchhhh
Confidence 34789999999999999999999876432344333322111 0 111 2 3577899998753321 122345
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+++|++++|+|++.++ .+..+..+.+.+... ..+ |+||+|+.+...........+. .......
T Consensus 76 ~~~d~~llv~d~~~~~----------s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~ 142 (169)
T cd01892 76 AACDVACLVYDSSDPK----------SFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC---RKLGLPP 142 (169)
T ss_pred hcCCEEEEEEeCCCHH----------HHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHH---HHcCCCC
Confidence 8999999999876321 122221111222111 122 9999998643321111122222 2223333
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+.+|.|+..+++.+.+..
T Consensus 143 ~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 143 PLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CEEEEeccCccHHHHHHHHHHHh
Confidence 58999999999999999998864
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.5e-11 Score=115.05 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=92.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++........|..+.+.... .. ....+.+|||||...... .....++.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------~~~~~~~~ 78 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------ITRSYYRG 78 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHhcc
Confidence 37899999999999999999998763332223222221111 11 123588999999753221 12344678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+..+ .+..+..+...+.... .+ ++||+|+.+...... .....+.... ..+
T Consensus 79 ad~~vlv~D~~~~~----------s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 144 (210)
T PLN03108 79 AAGALLVYDITRRE----------TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST---EEGEQFAKEH-GLI 144 (210)
T ss_pred CCEEEEEEECCcHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCH---HHHHHHHHHc-CCE
Confidence 99999999876322 2222322222222221 11 899999976543321 2222222222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+|.++....
T Consensus 145 ~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 145 FMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999988764
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=119.51 Aligned_cols=143 Identities=15% Similarity=0.054 Sum_probs=83.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-Cccc------------------------------CCCcccccCcccc--ccCCeEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAE------------------------------NFPFCTIDPNENN--KVPAFLN 144 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~------------------------------~~~~~T~~~~~~~--~~~~~i~ 144 (561)
+|+++|.||+|||||+|+|.... ...+ ..+|+|++..... ..+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 48999999999999999997644 2111 1266777664432 2345799
Q ss_pred EEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhccccc
Q psy17315 145 VVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKADS 220 (561)
Q Consensus 145 l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D~ 220 (561)
++||||..... ......++.+|++++|+|++... ..+.......+.... .. |.||+|+
T Consensus 81 liDTpG~~~~~-------~~~~~~~~~ad~~llVvD~~~~~-----------~~~~~~~~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 81 IADTPGHEQYT-------RNMVTGASTADLAILLVDARKGV-----------LEQTRRHSYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred EEECCcHHHHH-------HHHHHhhhhCCEEEEEEECCCCc-----------cHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence 99999974221 12344578999999999986311 000001111122222 22 6899999
Q ss_pred cCcCCCC-CccHHHHHHHhhhcC--CCcEEEEEccCCCCHH
Q psy17315 221 KKKMGPK-KTDEGEKKMLLGRVG--TNLKVGIVGVPNVGKS 258 (561)
Q Consensus 221 ~~~~~~~-~~~~~~l~~l~~~~~--~~~~i~isg~~~~Gks 258 (561)
....... ......+..+...+. ..+.+.+||++|.|+.
T Consensus 143 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 143 VDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 7421100 001122333333333 3458999999999974
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=107.43 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=88.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|+|||||++++.+..... .+..++.+.... ...+ ..+.+|||||...... +.. ..++.+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~---~~~~~~ 72 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPE-EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----LRP---LSYPMT 72 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----ccc---ccCCCC
Confidence 479999999999999999998766221 111111111110 1111 2477999999754322 111 235788
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCCCC---------CccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMGPK---------KTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~~~---------~~~~~~l~~l 237 (561)
|++++|+|....+ .++.+. .+...+..... + ++||+|+.+..... .........+
T Consensus 73 ~~~ilv~~~~~~~----------s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (174)
T cd04135 73 DVFLICFSVVNPA----------SFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKL 142 (174)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 9999999765322 222221 22223322211 1 89999986542110 1112223333
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+....+.+|+++|.|+++++..+.+.
T Consensus 143 ~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 143 AKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 333444467899999999999999998765
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=108.36 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||+++|.+|||||||++++..........|.......... .....+.+|||||...... +. ...++.+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~a~ 74 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR----LR---PLSYPQTD 74 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh----hh---hhhcccCC
Confidence 58999999999999999999976532111222111110001 1124688999999854321 11 22468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCCCC---------CccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMGPK---------KTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~~~---------~~~~~~l~~l~ 238 (561)
++++|+|.+.++ .++.+. .+...+.... .+ |+||+|+.+..... .....+...+.
T Consensus 75 ~~ilv~d~~~~~----------s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 75 VFLVCFSVVSPS----------SFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 999999876322 222221 2222332221 12 99999986542110 11112222233
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
........+.+|+++|.|+..+++.+...
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 33344578999999999999999998764
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.4e-11 Score=109.69 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=90.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||++++++........|..+.+.... . .....+.++||||...... .+ ....++++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~---~~~~~~~~ 76 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK---SM---VQHYYRNV 76 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH---hh---HHHhhcCC
Confidence 6899999999999999999987653222222222111111 1 1123688999999743221 11 12335889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+...........+. .. ....
T Consensus 77 d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~~-~~~~ 142 (170)
T cd04115 77 HAVVFVYDVTNMA----------SFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA---DA-HSMP 142 (170)
T ss_pred CEEEEEEECCCHH----------HHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH---HH-cCCc
Confidence 9999999876322 2233333333333322 11 8999999765443222222222 22 2356
Q ss_pred EEEEEccC---CCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVP---NVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~---~~Gks~l~~~l~~~ 267 (561)
.+.+|+++ +.|+.+++..+...
T Consensus 143 ~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 143 LFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred EEEEeccCCcCCCCHHHHHHHHHHH
Confidence 78899999 88999999988764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=109.00 Aligned_cols=156 Identities=18% Similarity=0.125 Sum_probs=90.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.+|+++|.+|||||||++++.+........|........... ....+.++||||...... +.. ..++.+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----l~~---~~~~~a~ 73 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR----LRS---LSYADTD 73 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc----ccc---ccccCCC
Confidence 379999999999999999999765221111211111110011 123588999999753321 111 2357899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCCCC---------CccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMGPK---------KTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~~~---------~~~~~~l~~l~ 238 (561)
++++|+|.+..+ .++.+. .+...+..... + |+||+|+.+..... .....+...+.
T Consensus 74 ~~ilv~dv~~~~----------sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 74 VIMLCFSVDSPD----------SLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 999999765322 222222 12222222211 1 89999997543211 01111122222
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
........+.+|+++|.|+..+|.++.+..+
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 2223345789999999999999999998753
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-11 Score=110.84 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=86.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+. .+. ... .+... ...+.+|||+|.+ .+..+...+.+....++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~l~~~~~~~~~~~i 77 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IED--SYRKQVVIDGETCLLDILDTAGQE-EYSAMRDQYMRTGEGFL 77 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCc-chh--eEEEEEEECCEEEEEEEEECCCCc-chHHHHHHHHhcCCEEE
Confidence 36899999999999999999988654432221 111 111 11111 2346789999954 45555555544333222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..+... +.........|+++|+||+|. ..
T Consensus 78 ~v~----------------~~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piivv~nK~Dl--~~- 120 (162)
T cd04138 78 CVF----------------AINSRKSFEDIHTYREQ------------------IKRVKDSDDVPMVLVGNKCDL--AA- 120 (162)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--cc-
Confidence 211 11222333322222211 111111247899999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.......+.++.+.. +.+++++||++|.|++++.+..
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 121 RTVSSRQGQDLAKSY--GIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred ceecHHHHHHHHHHh--CCeEEEecCCCCCCHHHHHHHH
Confidence 222334444554443 5689999999999998875543
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=114.36 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=93.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.+|||||||++++.+..... .+..++.+.... ... ...+.+|||||...... +. ...++.+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~----~~---~~~~~~a 72 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA----MR---RLSILTG 72 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH----HH---HHHhccC
Confidence 379999999999999999998765322 232333222211 111 13578999999753221 11 1235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh------------cch---hhccccccCcCCCCCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL------------RRS---VDAKADSKKKMGPKKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~---v~NK~D~~~~~~~~~~~~~~l~~l 237 (561)
|++++|+|.+. ...++.+..+.+++.+. ..+ |+||+|+...... ...++..+
T Consensus 73 d~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v---~~~ei~~~ 139 (247)
T cd04143 73 DVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV---QRDEVEQL 139 (247)
T ss_pred CEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc---CHHHHHHH
Confidence 99999998753 22334444444444332 111 9999999753222 23334444
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.........+.+|+++|.|++.++++|....
T Consensus 140 ~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 140 VGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3332344679999999999999999998853
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-11 Score=112.29 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=85.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+....+.....+.+ + +... .+... ...+.+|||+|.++ +..+...+.++...++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~~i 77 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-E--DSYRKQIEVDGQQCMLEILDTAGTEQ-FTAMRDLYIKNGQGFV 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCch-h--hhEEEEEEECCEEEEEEEEECCCccc-cchHHHHHhhcCCEEE
Confidence 478999999999999999999876543322211 1 1111 12122 23577899999543 5555544443333222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +........+|+++|+||+|. ...
T Consensus 78 lv~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 121 (163)
T cd04136 78 LVY----------------SITSQSSFNDLQDLREQ------------------ILRVKDTENVPMVLVGNKCDL--EDE 121 (163)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--ccc
Confidence 211 12222333333333221 111111146899999999954 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+...++.+.. +.+++++||++|.|+.++.+..
T Consensus 122 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 122 RVVSREEGQALARQW--GCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred ceecHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHH
Confidence 222233333444433 4789999999999988875543
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=105.65 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=87.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.||+++|.+|||||||++++.+........| +....... .. ....+.++||||...... +. ...++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGQEDYDR----LR---PLSYPDT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ccccceEEEEEECCEEEEEEEEeCCCchhhhh----cc---ccccCCC
Confidence 4799999999999999999997652211111 11111111 11 123578999999743221 11 1235889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCCCC---------CccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMGPK---------KTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~~~---------~~~~~~l~~l 237 (561)
|++++|+|.+..+ .++.+. .+...+.... .+ ++||+|+.+..... .........+
T Consensus 74 d~~i~v~~~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~ 143 (175)
T cd01870 74 DVILMCFSIDSPD----------SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 143 (175)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHH
Confidence 9999999765321 222221 2222232221 12 89999987542211 0011122222
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.........+.+|+++|.|+.+++.++.+.
T Consensus 144 ~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 144 ANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 222334467999999999999999999864
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=110.32 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=89.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccC--CeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
||+++|.+|||||||++++.+.... ..++.++.+.... ...+ ..+.++||||...... +. ...++.+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA----MR---KLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----HH---HHHhhcCC
Confidence 5899999999999999999976632 2222232221111 1111 3588999999754321 11 12468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+... .+..+..+...+.... .+ ++||+|+.+...... ................
T Consensus 73 ~vilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~--~~~~~~~~~~~~~~~~ 140 (198)
T cd04147 73 AFALVYAVDDPE----------SFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP--AKDALSTVELDWNCGF 140 (198)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc--HHHHHHHHHhhcCCcE
Confidence 999999876321 2223333333333322 12 899999975422111 1111111111122356
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|+..+++++.+..
T Consensus 141 ~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 141 VETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998864
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=113.72 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=88.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCC--Ccc-cccCccc--cccCCeEEEEeCCCcccCCccccccccccccccc-
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENF--PFC-TIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS- 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~--~~~-T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~- 170 (561)
++|+++|.+|||||||++++++.......+ ++. .....+. ......+.+|||||... .+... .++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~~~---~~~~ 71 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------WTEDS---CMQY 71 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch------HHHhH---Hhhc
Confidence 479999999999999999997554221111 110 1100010 11234688999999851 11111 234
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .++.+..+...+.... .+ |+||+|+.+...... .+...+... ..
T Consensus 72 ~ad~iilV~d~td~~----------S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~---~~~~~~a~~-~~ 137 (221)
T cd04148 72 QGDAFVVVYSVTDRS----------SFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV---QEGRACAVV-FD 137 (221)
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH---HHHHHHHHH-cC
Confidence 899999999886422 2233333333333322 12 899999875433221 112222222 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
...+.+|+.+|.|+..+++++.+...
T Consensus 138 ~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 138 CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998753
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-10 Score=104.95 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+|++++|.+|||||||++++.+.... ..++.++.+.... .. ....+.+|||||...... +. -..++.+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~---~~~~~~a 72 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP-TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK----LR---PLCYPDT 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc----cc---ccccCCC
Confidence 47999999999999999999865422 2233333221111 11 123578999999854332 11 1246889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhc--ch---hhccccccCcCCC---------CCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLR--RS---VDAKADSKKKMGP---------KKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~--~~---v~NK~D~~~~~~~---------~~~~~~~l~~l 237 (561)
|++++|+|.+.++ .+..+ ..+...+.... .+ ++||+|+.+..+. ......+...+
T Consensus 73 ~~~i~v~d~~~~~----------sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 73 DVFLLCFSVVNPS----------SFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred cEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 9999999876322 12222 11222222211 12 8999998754321 01112223333
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHH
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLT 265 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~ 265 (561)
.........+.+|+++|.|+..+++.+.
T Consensus 143 a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 3344445789999999999999998874
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-13 Score=131.10 Aligned_cols=163 Identities=18% Similarity=0.300 Sum_probs=98.9
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh-hh-HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI-IN-EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~-~~-~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+.-..+.++|.||+|||||+++|+...+..+.|+|+ |+.|..+... .+ .++.+.|+||+.+.... .+-
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFT--TL~P~iG~v~yddf~q~tVADiPGiI~GAh~--------nkG 263 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFT--TLRPHIGTVNYDDFSQITVADIPGIIEGAHM--------NKG 263 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCccccccee--eeccccceeeccccceeEeccCccccccccc--------cCc
Confidence 455678999999999999999999999999999884 4555544222 12 23778888887543111 111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCH-----HHHHHHHhhhhccCCceEEEecCC
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSN-----ADIEHLNKLNLLTAKTQIYLVNLS 394 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~-----~e~~~l~~~~~l~~kP~iiv~NK~ 394 (561)
.-..+| +||++++.+..|+|.-.. . ...+|.. .|++.++. .+.++|.++|+||+
T Consensus 264 lG~~FL--------------rHiER~~~l~fVvD~s~~----~-~~~p~~~~~lL~~ELe~yek--~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 264 LGYKFL--------------RHIERCKGLLFVVDLSGK----Q-LRNPWQQLQLLIEELELYEK--GLADRPALIVANKI 322 (366)
T ss_pred ccHHHH--------------HHHHhhceEEEEEECCCc----c-cCCHHHHHHHHHHHHHHHhh--hhccCceEEEEecc
Confidence 112221 356666666655553111 0 0112221 12222221 24789999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
|. .+.....+..+.+.+. +..|+|+||++++|+.+|....+
T Consensus 323 D~--~eae~~~l~~L~~~lq----~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 323 DL--PEAEKNLLSSLAKRLQ----NPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred Cc--hhHHHHHHHHHHHHcC----CCcEEEeeeccccchHHHHHHHh
Confidence 65 2222333455554442 34599999999999988855443
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=110.94 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=80.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-Cccc---------------CCCcccccCccc--cccCCeEEEEeCCCcccCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAE---------------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEG 158 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~---------------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~ 158 (561)
.+|+++|.+|||||||+|+|++.. .... ...|+|...... ......+.++||||......
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-- 80 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG-- 80 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH--
Confidence 369999999999999999998632 1111 123444443221 12244789999999854221
Q ss_pred cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHH
Q psy17315 159 QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 159 ~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
.....++.+|++++|+|++.. .......+...+.....+ ++||+|+..... ......+.
T Consensus 81 -----~~~~~~~~~d~~ilV~d~~~~-----------~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~ 142 (194)
T cd01891 81 -----EVERVLSMVDGVLLLVDASEG-----------PMPQTRFVLKKALELGLKPIVVINKIDRPDARP--EEVVDEVF 142 (194)
T ss_pred -----HHHHHHHhcCEEEEEEECCCC-----------ccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH--HHHHHHHH
Confidence 223456889999999987631 011111111122222222 899999974211 01112222
Q ss_pred HHhhhc------CCCcEEEEEccCCCCH
Q psy17315 236 MLLGRV------GTNLKVGIVGVPNVGK 257 (561)
Q Consensus 236 ~l~~~~------~~~~~i~isg~~~~Gk 257 (561)
...... ...+.+.+||++|.|.
T Consensus 143 ~~~~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 143 DLFIELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred HHHHHhCCccccCccCEEEeehhccccc
Confidence 222111 1346799999999765
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=113.39 Aligned_cols=171 Identities=16% Similarity=0.095 Sum_probs=110.6
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
...++.+.++|.+|+|||||||+|.... ..++..+-+|. +.... .....+.||||||+..+...+......+.+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~-~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTD-ITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCC-chhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 3456889999999999999999999766 44554443443 33321 2335799999999987666555566667788
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhccccccCcC-----C---CCCccHHHHHH
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKADSKKKM-----G---PKKTDEGEKKM 236 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D~~~~~-----~---~~~~~~~~l~~ 236 (561)
+...|++++++|+.++.+. ...+.+.+.+.... .+ +.|.+|..... + +..+....+++
T Consensus 115 l~~~DLvL~l~~~~draL~----------~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 115 LPKLDLVLWLIKADDRALG----------TDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred hhhccEEEEeccCCCcccc----------CCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 8899999999987644322 22233333333322 22 78888887552 1 11222222322
Q ss_pred Hhhh----c-CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcc
Q psy17315 237 LLGR----V-GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDV 274 (561)
Q Consensus 237 l~~~----~-~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v 274 (561)
-.+. + .-.+.+..+|+.+-|++.|..++....+.....
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 2111 1 345778888999999999999999987644443
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-10 Score=105.13 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=88.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCc----cccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN----ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~----~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++++++|.+|||||||+.++..........|. ..+.. ........+.++||||...... +. ...++.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-VFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----LR---PLSYPQT 73 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCc-ceeeeEEEEEECCEEEEEEEEECCCchhhhh----hh---hhhcCCC
Confidence 58999999999999999999875422111111 11100 0011123588999999743321 11 2246789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCC---------CCCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMG---------PKKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~---------~~~~~~~~l~~l 237 (561)
|++++|+|.+.++ .+..+. .+...+.... .+ |+||+|+.+... .......+...+
T Consensus 74 d~~ilv~d~~~~~----------sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 143 (174)
T cd01871 74 DVFLICFSLVSPA----------SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 9999999876322 222221 1222222211 11 899999964321 001112222233
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+....+.+|+++|.|+..+++.+.+.
T Consensus 144 ~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 144 AKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 333333467899999999999999998753
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.1e-12 Score=117.16 Aligned_cols=168 Identities=25% Similarity=0.313 Sum_probs=100.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+-|++.|++|+|||||+|+|+++. ..+.++.+||.|..+.-+++ +.++.++|+||+- +.+..+......+..+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k-~LArtSktPGrTq~iNff~~-~~~~~lVDlPGYG--yAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQK-NLARTSKTPGRTQLINFFEV-DDELRLVDLPGYG--YAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCc-ceeecCCCCCccceeEEEEe-cCcEEEEeCCCcc--cccCCHHHHHHHHHHHH
Confidence 34679999999999999999999963 34667778888844433333 3458899999962 33333332222333334
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK- 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~- 401 (561)
+||+... + +..++. +.+ ..+ ...+.|.+.+..+.. .+.|+++|+||+|+ +..
T Consensus 99 ~YL~~R~----------------~-L~~vvl-liD--~r~----~~~~~D~em~~~l~~-~~i~~~vv~tK~DK--i~~~ 151 (200)
T COG0218 99 EYLEKRA----------------N-LKGVVL-LID--ARH----PPKDLDREMIEFLLE-LGIPVIVVLTKADK--LKKS 151 (200)
T ss_pred HHHhhch----------------h-heEEEE-EEE--CCC----CCcHHHHHHHHHHHH-cCCCeEEEEEcccc--CChh
Confidence 4433221 1 111111 112 222 345556676665554 68999999999954 432
Q ss_pred -ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHH
Q psy17315 402 -KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 -~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+..+.+.+....+.. .++.+|+.++.|+++|.....
T Consensus 152 ~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~ 193 (200)
T COG0218 152 ERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKIL 193 (200)
T ss_pred HHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHH
Confidence 2233455554443332222 288899999999887754443
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-11 Score=113.98 Aligned_cols=143 Identities=18% Similarity=0.118 Sum_probs=84.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC----------------cccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA----------------AAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG 158 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~----------------~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~ 158 (561)
++|+++|.+|+|||||+++|++... ......|+|.+..... ..+.++.++||||...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 6799999999999999999986410 0011456666543321 2345789999999852
Q ss_pred cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHH
Q psy17315 159 QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 159 ~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l 234 (561)
+.......+..+|++++|+|+... ...+-..+-..+.....+ +.||+|+............++
T Consensus 78 --~~~~~~~~~~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i 144 (195)
T cd01884 78 --YIKNMITGAAQMDGAILVVSATDG-----------PMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEV 144 (195)
T ss_pred --HHHHHHHHhhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHH
Confidence 223345667889999999987521 000111112223333332 689999963211111112234
Q ss_pred HHHhhhcC----CCcEEEEEccCCCCH
Q psy17315 235 KMLLGRVG----TNLKVGIVGVPNVGK 257 (561)
Q Consensus 235 ~~l~~~~~----~~~~i~isg~~~~Gk 257 (561)
..++.... ..+.+++||.+|.+.
T Consensus 145 ~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 145 RELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHhcccccCCeEEEeeCccccCC
Confidence 44443332 356899999998863
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-11 Score=112.55 Aligned_cols=165 Identities=15% Similarity=0.082 Sum_probs=94.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-Cccc-CCCcccccCcccc--ccCCeEEEEeCCCcccCCcccc----ccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAE-NFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQ----GLGNAFLSH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~-~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~----~~~~~~l~~ 168 (561)
++|+++|.||||||||+|+|+|.. ..++ ..+++|+..+... ..+..+.++||||+........ .+...+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 369999999999999999999987 3333 2568888766542 3456899999999986542211 222223334
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHH----HhcchhhccccccCcCCCCC---ccHHHHHHHhhhc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIR----DLRRSVDAKADSKKKMGPKK---TDEGEKKMLLGRV 241 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~v~NK~D~~~~~~~~~---~~~~~l~~l~~~~ 241 (561)
....|++++|+|+.. . ......-++.+.+.+- .....+.+++|......... .....+..+....
T Consensus 81 ~~g~~~illVi~~~~--~------t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c 152 (196)
T cd01852 81 APGPHAFLLVVPLGR--F------TEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC 152 (196)
T ss_pred CCCCEEEEEEEECCC--c------CHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh
Confidence 577899999997642 0 0011111222222111 11112788888875432211 1123455555543
Q ss_pred CCCcEEEE-----EccCCCCHHHHHHHHHhhccC
Q psy17315 242 GTNLKVGI-----VGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 242 ~~~~~i~i-----sg~~~~Gks~l~~~l~~~~~~ 270 (561)
... ...+ ++..+.+...|+..+.+...+
T Consensus 153 ~~r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 153 GGR-YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CCe-EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 221 1222 345667888888888776433
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-12 Score=131.35 Aligned_cols=201 Identities=20% Similarity=0.277 Sum_probs=111.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+.+.|.+|+|||+|+|.+.+..+ +.+++.++|| +.... +...+.++.+|||||+.+....+...+.+....
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~--- 127 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS--- 127 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHH---
Confidence 4799999999999999999998744 3455555554 22222 233456789999999854333333222111000
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+..+|+++.|++.. ..+...+..++..... ..+|.++|+||+|. ..
T Consensus 128 ------------------~l~~aDvil~VvD~~----------~s~~~~~~~il~~l~~-~~~p~IlViNKiDl--~~-- 174 (339)
T PRK15494 128 ------------------SLHSADLVLLIIDSL----------KSFDDITHNILDKLRS-LNIVPIFLLNKIDI--ES-- 174 (339)
T ss_pred ------------------HhhhCCEEEEEEECC----------CCCCHHHHHHHHHHHh-cCCCEEEEEEhhcC--cc--
Confidence 011224443332210 1223333344443332 35788899999954 32
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH-------HHHhcccc----hHHHHHH-HHHcccCceec
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY-------LDEQKATS----VLDKIIT-QGYKSLQLQYF 470 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~-------~~~~~~~~----~l~~li~-~~~~~l~li~~ 470 (561)
.....+.+++....++.+++++||++|.|+++|.+...... .+.+.... ....+++ .++..++=-..
T Consensus 175 -~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP 253 (339)
T PRK15494 175 -KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELP 253 (339)
T ss_pred -ccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccC
Confidence 12445555555443457899999999999998876554421 11111111 1223333 35555544444
Q ss_pred cccCCCceeccccCC
Q psy17315 471 FTAGQDEVKAWTIQK 485 (561)
Q Consensus 471 ~t~~~~ev~a~~~~~ 485 (561)
|... -+++.|....
T Consensus 254 ~~~~-v~i~~~~~~~ 267 (339)
T PRK15494 254 YKLT-VQTEKWEDLK 267 (339)
T ss_pred ceEE-EEEEEEEEcC
Confidence 5544 4558887654
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=108.34 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=93.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..|.....+++..+. ....+...+ ..+.+|||+|.+ .+..+...+.+....++.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~l~l~D~~g~~-~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDF-KIRTIELDGKKIKLQIWDTAGQE-RFRTITTAYYRGAMGIIL 81 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceE-EEEEEEECCEEEEEEEEeCCchH-HHHHHHHHHhCCCCEEEE
Confidence 5799999999999999999999877655444322111 112222222 367899999954 355544444333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. .+..
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~p~iiv~nK~Dl--~~~~ 124 (167)
T cd01867 82 VY----------------DITDEKSFENIRNWMRN------------------IEEHA-SEDVERMLVGNKCDM--EEKR 124 (167)
T ss_pred EE----------------ECcCHHHHHhHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--cccc
Confidence 11 12223344433333322 11111 136899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
....+...++++.. +.+++++||+++.|+.++.++..+.+
T Consensus 125 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 125 VVSKEEGEALADEY--GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 23344555555544 56899999999999988866655443
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-11 Score=114.09 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=84.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH---------HHHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK---------EINKIEKLV 313 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~---------~~~~l~~~~ 313 (561)
....|.+.|.+|+|||+|+|.+++..+ ...++..+|++....-+.. +..+.+|||||+.. .+..+...+
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKK-LARTSKTPGRTQLINFFEV-NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-cccccCCCCcceEEEEEEe-CCcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 457899999999999999999998742 2233444454411111111 24689999999631 122111111
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
.+.. ...+.+..|++. . ......+...+..... ..+|+++|+||
T Consensus 95 l~~~-------------------------~~~~~ii~vvd~------~----~~~~~~~~~~~~~~~~-~~~pviiv~nK 138 (179)
T TIGR03598 95 LEKR-------------------------ENLKGVVLLMDI------R----HPLKELDLEMLEWLRE-RGIPVLIVLTK 138 (179)
T ss_pred HHhC-------------------------hhhcEEEEEecC------C----CCCCHHHHHHHHHHHH-cCCCEEEEEEC
Confidence 1100 001222222221 0 1233444444443332 47999999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhC
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLV 434 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~ 434 (561)
+|...........+++++.+.......+++++||++|.|++
T Consensus 139 ~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 139 ADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 96422111223455666666554223579999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-11 Score=105.80 Aligned_cols=139 Identities=16% Similarity=0.149 Sum_probs=90.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
.+|++||.+++|||||+++|.+...... .|... ... =.+|||||-.-..+ .+..+++....+||+|+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i----~~~--~~~IDTPGEyiE~~---~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAI----EYY--DNTIDTPGEYIENP---RFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC----cccee----Eec--ccEEECChhheeCH---HHHHHHHHHHhhCCEEE
Confidence 3799999999999999999998663221 22111 112 23599999764332 34455666678999999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccC
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVP 253 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~ 253 (561)
+|.|++.....+.. ....-..++ |.+|+|+.+. .++.......+...+-...+.+|+.+
T Consensus 69 ll~dat~~~~~~pP--------------~fa~~f~~pvIGVITK~Dl~~~----~~~i~~a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 69 LLQDATEPRSVFPP--------------GFASMFNKPVIGVITKIDLPSD----DANIERAKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred EEecCCCCCccCCc--------------hhhcccCCCEEEEEECccCccc----hhhHHHHHHHHHHcCCCCeEEEECCC
Confidence 99998743311110 000111122 7889998732 12333444555555666679999999
Q ss_pred CCCHHHHHHHHHh
Q psy17315 254 NVGKSTFFNVLTK 266 (561)
Q Consensus 254 ~~Gks~l~~~l~~ 266 (561)
|.|+..|..+|.+
T Consensus 131 ~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 131 GEGIEELKDYLEE 143 (143)
T ss_pred CcCHHHHHHHHhC
Confidence 9999999998853
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.3e-10 Score=104.61 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCc-cccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPN-ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~-~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|++++|.++||||||+.++....... .+..+.+.... ........+.+|||+|...... + ....++.+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~----~---~~~~~~~a~ 74 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR----L---RPLSYRGAD 74 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc----c---chhhcCCCc
Confidence 579999999999999999999765321 12111111000 0001124688999999754332 1 123568999
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC-----C--CCccHHHHHHHhhh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG-----P--KKTDEGEKKMLLGR 240 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~-----~--~~~~~~~l~~l~~~ 240 (561)
++++|+|.+.++ .++++ ..+...+...... |+||+|+.+... + ......+...+...
T Consensus 75 ~~ilvyd~~~~~----------Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 75 VFVLAFSLISRA----------SYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred EEEEEEEcCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 999999876322 23333 2222233322111 999999965421 0 01122233333333
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
......+.+|+++|.|+..+|+.+.+.
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 333357899999999999999999875
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-11 Score=118.18 Aligned_cols=131 Identities=18% Similarity=0.084 Sum_probs=81.3
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhh-cCCCCc-----cCCCChHHH-HHHHHHHHhcCCCc--cccccccC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SDKPTW-----GDGDGPKAP-KRRKQHLSDKLRPK--ADSKKKMG 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~k~~l-----~DL~~~~~~-~~w~~~l~~~~~~~--~~~~~~~~ 77 (561)
+..+.|.|++.| ..|.+. +++....+. .+.|.+ +||.+.... ..|.+.+++.+..+ ++++.+.+
T Consensus 38 D~viiV~d~~~p------~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 38 DQIVIVSSAVLP------ELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG 110 (245)
T ss_pred CEEEEEEECCCC------CCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence 556899999999 544433 333111111 233333 999865544 47888887766655 66666554
Q ss_pred CCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCC-------cccccCccccccCCeEEEEeCC
Q psy17315 78 PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFP-------FCTIDPNENNKVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~-------~~T~~~~~~~~~~~~i~l~Dtp 149 (561)
..... . . . ....++++|.||||||||+|+|.+.. ..+++.+ +||++... ... ...+++|||
T Consensus 111 i~eLf--~-~-----l-~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l-~~l-~~~~liDtP 179 (245)
T TIGR00157 111 LKELI--E-A-----L-QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL-FHF-HGGLIADTP 179 (245)
T ss_pred HHHHH--h-h-----h-cCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE-EEc-CCcEEEeCC
Confidence 33211 1 0 0 12468999999999999999999875 4444443 36665433 223 346899999
Q ss_pred CcccCC
Q psy17315 150 GLVKGA 155 (561)
Q Consensus 150 G~~~~~ 155 (561)
|+....
T Consensus 180 G~~~~~ 185 (245)
T TIGR00157 180 GFNEFG 185 (245)
T ss_pred CccccC
Confidence 997644
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=108.05 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=84.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|.+|+||++|++.+.+..+.....+.+.........+......+.+|||||.++ +..+...+.+....++..+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE-FSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc-hhHHHHHHHhhCCEEEEEE
Confidence 579999999999999999998875532222111101100001111123577899999543 4445444443332222111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
.+.+...+..+..+... +.........|+++|+||+|.. .....
T Consensus 82 ----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piiiv~NK~Dl~--~~~~~ 125 (164)
T cd04145 82 ----------------SVTDRGSFEEVDKFHTQ------------------ILRVKDRDEFPMILVGNKADLE--HQRKV 125 (164)
T ss_pred ----------------ECCCHHHHHHHHHHHHH------------------HHHHhCCCCCCEEEEeeCcccc--cccee
Confidence 11222222222222211 1111111368999999999643 21222
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..+...++++.. +.+++++||++|.|+.++.+..
T Consensus 126 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 126 SREEGQELARKL--KIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred cHHHHHHHHHHc--CCcEEEeeCCCCCCHHHHHHHH
Confidence 233445555443 5689999999999998875543
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-11 Score=112.64 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=91.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCccc------------------CCCcccccCccc--c--ccCCeEEEEeCCCcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE------------------NFPFCTIDPNEN--N--KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~------------------~~~~~T~~~~~~--~--~~~~~i~l~DtpG~~~~ 154 (561)
..|+++|..++|||||+++|++...... ...+.|.+.... . .....+.++||||....
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 5799999999999999999985442111 112344433222 1 23457999999997432
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccH
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~ 231 (561)
.......++.+|++++|+|+... ... .....-..+.....+ ++||+|..+. .+. ...
T Consensus 84 -------~~~~~~~~~~~D~ailvVda~~g-------~~~----~~~~~l~~~~~~~~p~ivvlNK~D~~~~-~~~-~~~ 143 (188)
T PF00009_consen 84 -------IKEMIRGLRQADIAILVVDANDG-------IQP----QTEEHLKILRELGIPIIVVLNKMDLIEK-ELE-EII 143 (188)
T ss_dssp -------HHHHHHHHTTSSEEEEEEETTTB-------STH----HHHHHHHHHHHTT-SEEEEEETCTSSHH-HHH-HHH
T ss_pred -------eecccceecccccceeeeecccc-------ccc----ccccccccccccccceEEeeeeccchhh-hHH-HHH
Confidence 22334557899999999987521 011 111122233333333 8999999811 000 011
Q ss_pred HHHH-HHhhhcC-----CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 232 GEKK-MLLGRVG-----TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 232 ~~l~-~l~~~~~-----~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+. .+..... ..+.+++||.+|.|+..|++.+.+..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 1111 2222222 34789999999999999999998764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=108.44 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=92.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh------------hhhHhhhcccHHHHHHHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE------------IINEELRLKDVEHIEKEINKIEK 311 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~------------~~~~el~l~Dt~Gi~~~~~~l~~ 311 (561)
..+|.+.|.+|+||++|++.+.+..+.....+.+...... ..+. .....+.+|||+|.+ .+..+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~~~ 81 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFRE-KRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-RFRSLTT 81 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEE-EEEEEcCccccccccCCCEEEEEEEeCCChH-HHHHHHH
Confidence 3679999999999999999999887654433322111100 0010 112357899999954 4555555
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEe
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLV 391 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~ 391 (561)
.+.+....++..+ ++.+.+.+..+..|+.. +.........|+++|+
T Consensus 82 ~~~~~~~~~i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piiiv~ 127 (180)
T cd04127 82 AFFRDAMGFLLIF----------------DLTNEQSFLNVRNWMSQ------------------LQTHAYCENPDIVLCG 127 (180)
T ss_pred HHhCCCCEEEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEE
Confidence 5444333222222 23334555544444332 1111111357899999
Q ss_pred cCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 392 NLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 392 NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
||+|. ........+++.+++... +.+++++||++|.|++++.+...+
T Consensus 128 nK~Dl--~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 128 NKADL--EDQRQVSEEQAKALADKY--GIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred eCccc--hhcCccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99954 322222334555565554 578999999999999888655443
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=108.33 Aligned_cols=154 Identities=13% Similarity=0.151 Sum_probs=84.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+....+... +.++.+. ... .+... ...+.+|||+|.+ .+..+...+.++....+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~d~~i 77 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIED--SYRKQVEVDGQQCMLEILDTAGTE-QFTAMRDLYMKNGQGFV 77 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchh--eEEEEEEECCEEEEEEEEECCCcc-cchhHHHHHHhhCCEEE
Confidence 4689999999999999999987654322 2222221 111 22222 2346789999954 35555555544433222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ...+...+..+..+... +.........|+++|+||+|.. ..
T Consensus 78 lv~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl~--~~ 121 (164)
T cd04175 78 LVY----------------SITAQSTFNDLQDLREQ------------------ILRVKDTEDVPMILVGNKCDLE--DE 121 (164)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECCcch--hc
Confidence 211 11111222222222221 1111111468999999999542 21
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+.+.++.+.. +.+++++||++|.|+.++.+..
T Consensus 122 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 122 RVVGKEQGQNLARQW--GCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred cEEcHHHHHHHHHHh--CCEEEEeeCCCCCCHHHHHHHH
Confidence 222223334444433 5789999999999998875544
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-10 Score=104.63 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=89.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||+++|.+|||||||++++.+........|........... ....+.+|||||...... +. ...++.+|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~----~~---~~~~~~a~ 74 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN----VR---PLCYPDSD 74 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh----cc---hhhcCCCC
Confidence 589999999999999999999765321111211111110011 123588999999743321 11 23468999
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC---------CCCccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l~~l~ 238 (561)
++++|+|.+.++ .++++ ..+...+...... |+||+|+.+... ...-...+...+.
T Consensus 75 ~~ilvfdit~~~----------Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 75 AVLICFDISRPE----------TLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred EEEEEEECCChh----------hHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999876322 22332 3333333332222 899999864210 0011122233333
Q ss_pred hhcCCCcEEEEEccCCCC-HHHHHHHHHhh
Q psy17315 239 GRVGTNLKVGIVGVPNVG-KSTFFNVLTKR 267 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~G-ks~l~~~l~~~ 267 (561)
........+.+|+++|.| +..+|+.+.+.
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 333333568999999995 99999998773
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-11 Score=111.08 Aligned_cols=158 Identities=15% Similarity=0.249 Sum_probs=113.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|..++|||+|.-++....|.....+++....-. ..+... ...+.+|||+| ++++..+..+|++++..++.
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~t-ktv~~~~~~ikfeIWDTAG-QERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLT-KTVTVDDNTIKFEIWDTAG-QERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccccccccccEEEE-EEEEeCCcEEEEEEEEcCC-cccccccccceecCCcEEEE
Confidence 578999999999999999999998877655555432100 011111 23577999999 55699999999999887766
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +|++.+.+.....|+.+ |..... .+.-+-+|.||+ |+....
T Consensus 84 vY----------------Dit~~~SF~~aK~Wvke------------------L~~~~~-~~~vialvGNK~--DL~~~R 126 (200)
T KOG0092|consen 84 VY----------------DITDEESFEKAKNWVKE------------------LQRQAS-PNIVIALVGNKA--DLLERR 126 (200)
T ss_pred EE----------------ecccHHHHHHHHHHHHH------------------HHhhCC-CCeEEEEecchh--hhhhcc
Confidence 66 67888888888887765 222211 122344599999 555445
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....++...+++.. +..++.+|||++.|++++...+.+.
T Consensus 127 ~V~~~ea~~yAe~~--gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 127 EVEFEEAQAYAESQ--GLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred cccHHHHHHHHHhc--CCEEEEEecccccCHHHHHHHHHHh
Confidence 66678888888875 7889999999999998876555443
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.9e-12 Score=130.40 Aligned_cols=58 Identities=29% Similarity=0.409 Sum_probs=42.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhh-hhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEI-INEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~-~~~el~l~Dt~Gi 302 (561)
..+.+++.|.+|+|||+|+|.+++..+...+.++ .|.||.. .+.+ .+..+.+|||+|+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~--tT~d~~~~~i~~~~~~~i~l~DT~G~ 247 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLF--ATLDPTTRRLDLPDGGEVLLTDTVGF 247 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCc--cccCCEEEEEEeCCCceEEEEecCcc
Confidence 4488999999999999999999997533333332 3346653 3344 2457899999998
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=107.10 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=90.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+||++|++.+.+..+... ++++.|..-....+.. ....+.+|||+|.+ .+..+...+.++...++.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD-CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE-RFRAVTRSYYRGAAGALM 80 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCcccceeEEEEEEEECCEEEEEEEEECCCcH-HHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999998865432 2222221000011112 22357899999954 355544444443333222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..|+.+ +.... ....|+++|+||+|. ....
T Consensus 81 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~iiiv~nK~Dl--~~~~ 123 (166)
T cd04122 81 VY----------------DITRRSTYNHLSSWLTD------------------ARNLT-NPNTVIFLIGNKADL--EAQR 123 (166)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhC-CCCCeEEEEEECccc--cccc
Confidence 22 23333444444444332 11111 135799999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+++... +.+++.+||++|.|+.++.....
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 124 DVTYEEAKQFADEN--GLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred CcCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHH
Confidence 23345555666554 57899999999999888755443
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.9e-11 Score=122.44 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=92.6
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hh-hhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EI-INEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
+..-..|.++|.+|+|||||++.|++..+..+.++++ |.+|.... .+ ...++.+|||||+.+....- .
T Consensus 155 lk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfT--T~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~--------~ 224 (335)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT--TLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--------A 224 (335)
T ss_pred EcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCc--eeCceEEEEEeCCCcEEEEEeCCCccCCCCcc--------c
Confidence 3455679999999999999999999987766666653 45676653 23 23469999999984311100 0
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH----HHhhh-hccCCceEEEecC
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH----LNKLN-LLTAKTQIYLVNL 393 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~----l~~~~-~l~~kP~iiv~NK 393 (561)
..-..++ +++++++++++|+|.... . +.++.+. |..+. .+..+|+++|+||
T Consensus 225 gLg~~fl--------------rhie~a~vlI~ViD~s~~---------~-s~e~~~~~~~EL~~~~~~L~~kp~IIV~NK 280 (335)
T PRK12299 225 GLGHRFL--------------KHIERTRLLLHLVDIEAV---------D-PVEDYKTIRNELEKYSPELADKPRILVLNK 280 (335)
T ss_pred cHHHHHH--------------HHhhhcCEEEEEEcCCCC---------C-CHHHHHHHHHHHHHhhhhcccCCeEEEEEC
Confidence 0001111 122333444444442111 0 1111111 11111 1247999999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
+|. ........+.++.++... +.+++++||+++.|+++|.+...+
T Consensus 281 iDL--~~~~~~~~~~~~~~~~~~--~~~i~~iSAktg~GI~eL~~~L~~ 325 (335)
T PRK12299 281 IDL--LDEEEEREKRAALELAAL--GGPVFLISAVTGEGLDELLRALWE 325 (335)
T ss_pred ccc--CCchhHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 954 321111112233333322 467999999999999988665544
|
|
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-10 Score=100.94 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=100.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+.++|.++|+.|+||||+++.|.+.. -.+++.-|.-.... .....++.++|..|....+ ..+-++...+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl--~~~~~~L~iwDvGGq~~lr-------~~W~nYfestd 85 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTL--EYKGYTLNIWDVGGQKTLR-------SYWKNYFESTD 85 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEE--EecceEEEEEEcCCcchhH-------HHHHHhhhccC
Confidence 36899999999999999999999987 45565555544322 3345689999999976433 34556678899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCcc-HHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTD-EGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~-~~~l~~l~~~~~~~~~ 246 (561)
++++|+|++++.. ..+-...+.+-+.+-. .+ ++||.|........+-. .-.++.+. ....++.
T Consensus 86 glIwvvDssD~~r---------~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-ks~~~~l 155 (185)
T KOG0073|consen 86 GLIWVVDSSDRMR---------MQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-KSHHWRL 155 (185)
T ss_pred eEEEEEECchHHH---------HHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-cccCceE
Confidence 9999999874332 2222222222222211 11 89999998443322111 11122222 2235678
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+||.+|.|.-.-+.|++...
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred EEEeccccccHHHHHHHHHHHH
Confidence 9999999998888888887764
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=106.18 Aligned_cols=158 Identities=14% Similarity=0.084 Sum_probs=85.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+|||+|++.++...+.....+.+.........+......+.+|||||... +..+.....+....++..+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~i~v~- 79 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED-YAAIRDNYHRSGEGFLLVF- 79 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhh-hhHHHHHHhhcCCEEEEEE-
Confidence 68999999999999999999876543322211111100001111224588999999543 4444444333322221111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
.+...+.+..+..+... +........+|+++|+||+|. .......
T Consensus 80 ---------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piiiv~NK~D~--~~~~~~~ 124 (164)
T cd04139 80 ---------------SITDMESFTATAEFREQ------------------ILRVKDDDNVPLLLVGNKCDL--EDKRQVS 124 (164)
T ss_pred ---------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEEcccc--ccccccC
Confidence 12222333323222221 111111147999999999954 3212223
Q ss_pred HHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 406 LPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 406 ~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+..... +.+++++||+++.|+.++.+...+
T Consensus 125 ~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 125 SEEAANLARQW--GVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred HHHHHHHHHHh--CCeEEEeeCCCCCCHHHHHHHHHH
Confidence 33344444433 578999999999999998665543
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=106.79 Aligned_cols=156 Identities=16% Similarity=0.244 Sum_probs=89.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.++|.+|+|||+|++.+....+.....+.. |..-....+... ...+.+|||||.++ +..+...+.+....++.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI-GVDFKIRTIELDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIII 80 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ceeEEEEEEEECCEEEEEEEEECCCcHh-HHHHHHHHhCcCCEEEE
Confidence 478999999999999999999876654332221 211011112222 23578999999543 44444444333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+.+..+..++.. +.... ....|+++|+||+|. ....
T Consensus 81 v~----------------d~~~~~s~~~l~~~~~~------------------~~~~~-~~~~~~iiv~nK~Dl--~~~~ 123 (166)
T cd01869 81 VY----------------DVTDQESFNNVKQWLQE------------------IDRYA-SENVNKLLVGNKCDL--TDKR 123 (166)
T ss_pred EE----------------ECcCHHHHHhHHHHHHH------------------HHHhC-CCCCcEEEEEEChhc--cccc
Confidence 11 12223344434333332 21111 136899999999954 2222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+...++.... +.+++++||++|.|+.++.+...
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 124 VVDYSEAQEFADEL--GIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred CCCHHHHHHHHHHc--CCeEEEEECCCCcCHHHHHHHHH
Confidence 22334455555543 67899999999999988855443
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=106.69 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=89.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+|||+|++.+.+..+.....+++ |..-....+.. ....+.+|||+|.++ +..+...+.++...++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVFRNDKRVKLQIWDTAGQER-YRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeEEEEEEEEECCEEEEEEEEECCChHH-HHHHHHHHccCCcEEEE
Confidence 468999999999999999999987654443332 21101112211 124688999999644 44444444333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+.+..+.+|+.. +..... ...|+++|+||+|. ....
T Consensus 80 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piivv~nK~Dl--~~~~ 122 (165)
T cd01865 80 MY----------------DITNEESFNAVQDWSTQ------------------IKTYSW-DNAQVILVGNKCDM--EDER 122 (165)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCCEEEEEECccc--Cccc
Confidence 11 12222344444443322 221111 36899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+...++.... +.+++++||+++.|+.+|.+...
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 123 VVSSERGRQLADQL--GFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ccCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHH
Confidence 22234444444433 56899999999999988865543
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=109.65 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=89.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc--cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV--RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~--~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+|||+|++.+....+....+.++.+..-.. ..+......+.+|||||- +++..+...+.+....++..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ-ERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc-HHHHHhhHHHccCCCEEEEE
Confidence 588999999999999999998876544333322211010 111112246889999994 44544444433222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.. +..... ...|+++|+||+|. .....
T Consensus 81 ~----------------D~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piiiv~NK~Dl--~~~~~ 123 (191)
T cd04112 81 Y----------------DITNKASFDNIRAWLTE------------------IKEYAQ-EDVVIMLLGNKADM--SGERV 123 (191)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCcEEEEEEcccc--hhccc
Confidence 1 12222333333333222 222221 36899999999954 22122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
...+...++.... +.+++++||++|.|+.++.+...+...
T Consensus 124 ~~~~~~~~l~~~~--~~~~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 124 VKREDGERLAKEY--GVPFMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred cCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223444444443 568999999999999998766655443
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-10 Score=108.33 Aligned_cols=156 Identities=13% Similarity=0.163 Sum_probs=86.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++++.+..|.....+..+.+.............+.+|||+|.++ +..+...+.+.....+..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQ-FPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCc-chHHHHHHhhcCCEEEEEE
Confidence 468999999999999999999887655444433222211111112234678999999643 4444444433332222111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh--hccCCceEEEecCChhhhhhhc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN--LLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~--~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+.+...+..+..+... +.... .....|+++|+||+|. ....
T Consensus 81 ----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~piilv~nK~Dl--~~~~ 124 (165)
T cd04140 81 ----------------SVTSKQSLEELKPIYEL------------------ICEIKGNNIEKIPIMLVGNKCDE--SHKR 124 (165)
T ss_pred ----------------ECCCHHHHHHHHHHHHH------------------HHHHhcCCCCCCCEEEEEECccc--cccC
Confidence 12222333333332211 11111 0136899999999954 2211
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+....+.... +.+++++||++|.|+.++.+.
T Consensus 125 ~v~~~~~~~~~~~~--~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 125 EVSSNEGAACATEW--NCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred eecHHHHHHHHHHh--CCcEEEeecCCCCCHHHHHHH
Confidence 22222333343333 567899999999998887544
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-12 Score=126.92 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=102.9
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..-..+.++|.||+|||||++.++...+..++|+|+ |.-|..++.. .+..+++.|.||+.+.... -.-
T Consensus 157 KllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFT--TL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~--------G~G 226 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFT--TLVPNLGVVRVDGGESFVVADIPGLIEGASE--------GVG 226 (369)
T ss_pred eeecccccccCCCCcHHHHHHHHhhcCCcccCCccc--cccCcccEEEecCCCcEEEecCccccccccc--------CCC
Confidence 344568999999999999999999999999999994 4456554322 2345889999998442110 111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHH----hh-hhccCCceEEEecCC
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLN----KL-NLLTAKTQIYLVNLS 394 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~----~~-~~l~~kP~iiv~NK~ 394 (561)
.-.++ ++||+++.++.|++|.... +. ..+.++.+.|. .+ ..+..||.++|+||+
T Consensus 227 LG~~F--------------LrHIERt~vL~hviD~s~~------~~-~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKi 285 (369)
T COG0536 227 LGLRF--------------LRHIERTRVLLHVIDLSPI------DG-RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKI 285 (369)
T ss_pred ccHHH--------------HHHHHhhheeEEEEecCcc------cC-CCHHHHHHHHHHHHHHhhHHhccCceEEEEecc
Confidence 11222 3578888888888775332 10 11223332222 11 234689999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
|... ..+.++.+.+.+.........++|||.++.|++.|.....
T Consensus 286 D~~~---~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~ 329 (369)
T COG0536 286 DLPL---DEEELEELKKALAEALGWEVFYLISALTREGLDELLRALA 329 (369)
T ss_pred CCCc---CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHH
Confidence 6322 2334455555444322122233499999999988865443
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-10 Score=107.24 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=84.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+||++|++++.+..+.....+.+ + +... .+.. ....+.+|||||.++ +..+...+.+....++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI-E--DSYRKQIEIDGEVCLLDILDTAGQEE-FSAMRDQYMRTGEGFLL 77 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCch-h--hhEEEEEEECCEEEEEEEEECCCccc-chHHHHHHHhhCCEEEE
Confidence 68999999999999999999876543322211 1 1111 1111 123577899999543 44444433332222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..+... +........+|+++|+||+|. ....
T Consensus 78 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~pii~v~nK~Dl--~~~~ 121 (164)
T smart00173 78 VY----------------SITDRQSFEEIKKFREQ------------------ILRVKDRDDVPIVLVGNKCDL--ESER 121 (164)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--cccc
Confidence 11 11222333322222111 111111136899999999954 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+.+.++.+.. +.+++++||+++.|+.++.+...
T Consensus 122 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 122 VVSTEEGKELARQW--GCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred eEcHHHHHHHHHHc--CCEEEEeecCCCCCHHHHHHHHH
Confidence 22233444444443 57899999999999988865543
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=123.79 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=95.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCC-eEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPA-FLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~-~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.+++.|+++|.+|+|||||+++|++........+|+|.+..... ..+. .+.+|||||...... .....++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-------~r~rga~ 157 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-------MRARGAK 157 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhh-------HHHhhhc
Confidence 46679999999999999999999987755566778887653321 1123 799999999754331 1123467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh-------
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR------- 240 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~------- 240 (561)
.+|++++|+|+.... .....+.+. .+.....+ +.||+|+... ........+..
T Consensus 158 ~aDiaILVVda~dgv-------~~qT~e~i~----~~~~~~vPiIVviNKiDl~~~------~~e~v~~~L~~~g~~~~~ 220 (587)
T TIGR00487 158 VTDIVVLVVAADDGV-------MPQTIEAIS----HAKAANVPIIVAINKIDKPEA------NPDRVKQELSEYGLVPED 220 (587)
T ss_pred cCCEEEEEEECCCCC-------CHhHHHHHH----HHHHcCCCEEEEEECcccccC------CHHHHHHHHHHhhhhHHh
Confidence 889999999875311 011111111 12222223 8999999642 11111111111
Q ss_pred c-CCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 241 V-GTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 241 ~-~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
. ...+.+.+||++|.|++.|++++..
T Consensus 221 ~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 221 WGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cCCCceEEEEECCCCCChHHHHHhhhh
Confidence 1 1235799999999999999999865
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-11 Score=129.41 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=91.0
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh-hhh-HhhhcccHHHHHHHHHH---HHHHHhhC
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE-IIN-EELRLKDVEHIEKEINK---IEKLVQRG 316 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~-~~~-~el~l~Dt~Gi~~~~~~---l~~~~~~~ 316 (561)
+.-..|+++|++|+|||||+|.|++..+..+.+++ .|.+|...+. ..+ ..++|+||||+.+.... +...+.
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~--TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l-- 232 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPF--TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFL-- 232 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCcccccCCCC--CccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHH--
Confidence 34456999999999999999999988654444443 2346666542 333 35999999998542111 111111
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh----ccCCceEEEec
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL----LTAKTQIYLVN 392 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~----l~~kP~iiv~N 392 (561)
+++++++++++|++... .......+....+++.+.. +..+|+|+|+|
T Consensus 233 -----------------------~~i~radvlL~VVD~s~------~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN 283 (390)
T PRK12298 233 -----------------------KHLERCRVLLHLIDIAP------IDGSDPVENARIIINELEKYSPKLAEKPRWLVFN 283 (390)
T ss_pred -----------------------HHHHhCCEEEEEeccCc------ccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence 01233344444443210 0000011111122222211 24699999999
Q ss_pred CChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 393 K~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
|+|. .. .....+.+.++.+......+++++||+++.|+.+|.+...+.
T Consensus 284 KiDl--~~-~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~ 331 (390)
T PRK12298 284 KIDL--LD-EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTF 331 (390)
T ss_pred CCcc--CC-hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHH
Confidence 9954 32 222333344433332112368999999999999886655443
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-10 Score=124.78 Aligned_cols=149 Identities=18% Similarity=0.115 Sum_probs=87.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc-------------------------------cCCCcccccCcccc--ccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA-------------------------------ENFPFCTIDPNENN--KVPA 141 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~-------------------------------~~~~~~T~~~~~~~--~~~~ 141 (561)
..++|+++|.+|+|||||+|+|+.....+ ...+|+|++..... ....
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 44789999999999999999998543110 11578888876542 2345
Q ss_pred eEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhcc
Q psy17315 142 FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAK 217 (561)
Q Consensus 142 ~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK 217 (561)
.+.++||||..... ......++.+|++++|+|++.. .. ......+.+. .+..+.. + ++||
T Consensus 85 ~i~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvDa~~~-~~----~~~~~~~~~~----~~~~~~~~~iivviNK 148 (425)
T PRK12317 85 YFTIVDCPGHRDFV-------KNMITGASQADAAVLVVAADDA-GG----VMPQTREHVF----LARTLGINQLIVAINK 148 (425)
T ss_pred EEEEEECCCcccch-------hhHhhchhcCCEEEEEEEcccC-CC----CCcchHHHHH----HHHHcCCCeEEEEEEc
Confidence 79999999963221 2233446889999999998631 00 0000111111 1222222 2 8999
Q ss_pred ccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHH
Q psy17315 218 ADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 218 ~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~ 259 (561)
+|+....... .....++..+..... ..+.+.+||.+|.|+..
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 9997411000 001122333333222 34689999999999874
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-11 Score=126.43 Aligned_cols=161 Identities=22% Similarity=0.244 Sum_probs=91.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..|++.|.+|+|||+|+|.+++.. .+.+++.++|+ +....+.. .+.++.++||||+.+....+...+.......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~--~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~-- 81 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS-- 81 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCc--eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH--
Confidence 458999999999999999999874 34445545554 23333322 2357999999998543333222211000000
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+..+|++..+++.. ..+...+...+..+.. ..+|+++|+||+| +....
T Consensus 82 -------------------~~~~D~il~vvd~~----------~~~~~~~~~i~~~l~~-~~~pvilVlNKiD--l~~~~ 129 (292)
T PRK00089 82 -------------------LKDVDLVLFVVDAD----------EKIGPGDEFILEKLKK-VKTPVILVLNKID--LVKDK 129 (292)
T ss_pred -------------------HhcCCEEEEEEeCC----------CCCChhHHHHHHHHhh-cCCCEEEEEECCc--CCCCH
Confidence 01113333222210 0233344444443332 3689999999995 43212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+.++.+. .++.+++++||+++.|+.+|.+....
T Consensus 130 ~~l~~~~~~l~~~-~~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 130 EELLPLLEELSEL-MDFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred HHHHHHHHHHHhh-CCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 2233344444332 23678999999999999988665544
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-10 Score=109.56 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=87.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+||++|++.+....|.....+. .+ +.. ..+...+ ..+.+|||+|.+ ++..+...+.+....++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t-~~--~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~ad~~il 76 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPT-IE--DSYRKQVVVDGQPCMLEVLDTAGQE-EYTALRDQWIREGEGFIL 76 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc-hH--hhEEEEEEECCEEEEEEEEECCCch-hhHHHHHHHHHhCCEEEE
Confidence 3789999999999999999987664432221 11 111 1111222 347889999954 355555555444333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +....... ....|+++|+||+|. ....
T Consensus 77 v~----------------d~~~~~s~~~~~~~~~~---------------i~~~~~~~-~~~~piilvgNK~Dl--~~~~ 122 (190)
T cd04144 77 VY----------------SITSRSTFERVERFREQ---------------IQRVKDES-AADVPIMIVGNKCDK--VYER 122 (190)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH---------------HHHHhccc-CCCCCEEEEEEChhc--cccC
Confidence 22 22223333333333322 00011000 136899999999954 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
........++.... +.+++++||++|.|+.++.+...+.+
T Consensus 123 ~v~~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 123 EVSTEEGAALARRL--GCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred ccCHHHHHHHHHHh--CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 22223333444433 56899999999999998866655443
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-10 Score=106.51 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=112.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.-.+|.+.|..|+||+-|+.++....|.....+++.-.. ..+.++..+ ..+++|||+| ++++..+...+++++..+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf-~~rt~e~~gk~iKlQIWDTAG-QERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDF-KIRTVELDGKTIKLQIWDTAG-QERFRTITSSYYRGAHGI 85 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEE-EEEEeeecceEEEEEeeeccc-cHHHhhhhHhhccCCCeE
Confidence 346899999999999999999998877766665432111 112333332 3688999999 678888888999998888
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +|+..+....+.+|+.+ +..+.. ...|.++|.||+ |+.+
T Consensus 86 i~vy----------------DiT~~~SF~~v~~Wi~E------------------i~~~~~-~~v~~lLVGNK~--Dl~~ 128 (205)
T KOG0084|consen 86 IFVY----------------DITKQESFNNVKRWIQE------------------IDRYAS-ENVPKLLVGNKC--DLTE 128 (205)
T ss_pred EEEE----------------EcccHHHhhhHHHHHHH------------------hhhhcc-CCCCeEEEeecc--ccHh
Confidence 7766 67777888888888776 122222 357999999999 4444
Q ss_pred hccchHHHHHHHHHhcCCCCe-EEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGAT-IIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~-vi~iSA~~~~gl~~L~~~~~ 441 (561)
......+..++++... +.+ ++++||+.+.++++......
T Consensus 129 ~~~v~~~~a~~fa~~~--~~~~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 129 KRVVSTEEAQEFADEL--GIPIFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred heecCHHHHHHHHHhc--CCcceeecccCCccCHHHHHHHHH
Confidence 3444455555666554 566 99999999998766544433
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-10 Score=104.87 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=87.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||+|++.+.+..+.....+.+ |. +.. ..+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~~i 80 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI-GV-EFATRSIQIDGKTIKAQIWDTAGQER-YRAITSAYYRGAVGAL 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ce-EEEEEEEEECCEEEEEEEEeCCChHH-HHHHHHHHHCCCCEEE
Confidence 579999999999999999999886654443332 21 111 1222222 3578999999643 4444444433222121
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ +..+...+..+..|+.. +..... .+.|+++|+||+|. ...
T Consensus 81 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~pi~vv~nK~Dl--~~~ 123 (165)
T cd01868 81 LVY----------------DITKKQTFENVERWLKE------------------LRDHAD-SNIVIMLVGNKSDL--RHL 123 (165)
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECccc--ccc
Confidence 111 11222333333333221 111111 35899999999954 222
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....++..+++... +.+++++||++|.|+.++.+..
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 124 RAVPTEEAKAFAEKN--GLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred ccCCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 222344455555443 5789999999999988875543
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=107.04 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=84.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+||++|++.+....+.....+.+ +.. ....+...+ ..+.+|||+|.++ +..+...+.+....++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDF-YRKEIEVDSSPSVLEILDTAGTEQ-FASMRDLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-hhe-EEEEEEECCEEEEEEEEECCCccc-ccchHHHHHhhCCEEEE
Confidence 368999999999999999998876654332221 111 001122222 3477899999543 44455444433332222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..+... +........+|+++|+||+|.. ...
T Consensus 79 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piviv~nK~Dl~--~~~ 122 (163)
T cd04176 79 VY----------------SLVNQQTFQDIKPMRDQ------------------IVRVKGYEKVPIILVGNKVDLE--SER 122 (163)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccch--hcC
Confidence 11 12222333333333222 1111111478999999999642 211
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.........+.... +.+++++||++|.|+.++.+.
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 123 EVSSAEGRALAEEW--GCPFMETSAKSKTMVNELFAE 157 (163)
T ss_pred ccCHHHHHHHHHHh--CCEEEEecCCCCCCHHHHHHH
Confidence 21222233333332 568999999999998877543
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-10 Score=106.13 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=90.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+||++|++.+....|.....+.+ +.. -...+...+ ..+.+|||+|.. .+..+...+.+....++.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~-~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI-EDA-YKQQARIDNEPALLDILDTAGQA-EFTAMRDQYMRCGEGFII 79 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcc-cce-EEEEEEECCEEEEEEEEeCCCch-hhHHHhHHHhhcCCEEEE
Confidence 478999999999999999998876643322221 110 001112222 357899999954 455665555444333222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+.++... +.........|+++|+||+|... ..
T Consensus 80 v~----------------d~~~~~Sf~~~~~~~~~------------------i~~~~~~~~~piilvgNK~Dl~~--~~ 123 (172)
T cd04141 80 CY----------------SVTDRHSFQEASEFKKL------------------ITRVRLTEDIPLVLVGNKVDLES--QR 123 (172)
T ss_pred EE----------------ECCchhHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEEChhhhh--cC
Confidence 22 22333444433332211 22221114689999999996422 11
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
....++..++++.. +.+++++||++|.|++++.+......
T Consensus 124 ~v~~~~~~~~a~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 124 QVTTEEGRNLAREF--NCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ccCHHHHHHHHHHh--CCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 22223344454443 67899999999999988866554443
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=109.07 Aligned_cols=165 Identities=15% Similarity=0.090 Sum_probs=92.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.+.|.+|+||++|++.+.+..+.....+....+......+......+.+|||+|.+ .+..+...+.+....++..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQE-EYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCc-cchhhHHHHhhcCCEEEEE
Confidence 367999999999999999999987654332222111110000111122357789999954 3555555554433322222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..+... +.........|+++|+||+|. .....
T Consensus 84 ~----------------D~s~~~s~~~~~~~~~~------------------i~~~~~~~~~piiiv~nK~Dl--~~~~~ 127 (189)
T PTZ00369 84 Y----------------SITSRSSFEEIASFREQ------------------ILRVKDKDRVPMILVGNKCDL--DSERQ 127 (189)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--ccccc
Confidence 2 22333444444333222 111111136799999999954 22111
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
...+...++.... +.+++.+||++|.|+.++.+...+...+.
T Consensus 128 i~~~~~~~~~~~~--~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 128 VSTGEGQELAKSF--GIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred cCHHHHHHHHHHh--CCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 1222333344333 56899999999999999877766555444
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=107.08 Aligned_cols=162 Identities=14% Similarity=0.199 Sum_probs=114.3
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
+...++.++|.+|+||+.++..+.+..|.....+... +|-. +.+.. ....+++|||+| ++++..+...|.+++.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG--IDFk~kti~l~g~~i~lQiWDtaG-Qerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG--IDFKIKTIELDGKKIKLQIWDTAG-QERFRTITTAYYRGAM 86 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEE--EEEEEEEEEeCCeEEEEEEEEccc-chhHHHHHHHHHhhcC
Confidence 3456899999999999999999999988766654431 1111 12222 224588999999 6778888888888887
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
.++-.+ .+++....+++..|+.. +.+... .+.|.++|.||+|...
T Consensus 87 gi~Lvy----------------Ditne~Sfeni~~W~~~------------------I~e~a~-~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 87 GILLVY----------------DITNEKSFENIRNWIKN------------------IDEHAS-DDVVKILVGNKCDLEE 131 (207)
T ss_pred eeEEEE----------------EccchHHHHHHHHHHHH------------------HHhhCC-CCCcEEEeeccccccc
Confidence 765555 56777888888888765 222322 4789999999995433
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......++-++++.+. +.+++.+||++|.++.+..-..+.+.+
T Consensus 132 --~R~V~~e~ge~lA~e~--G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 132 --KRQVSKERGEALAREY--GIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred --cccccHHHHHHHHHHh--CCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 2344455566666665 899999999999999887555544443
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=100.65 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=85.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCc-cccc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN-ENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~-~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||++++........ ++ .|.... .... ....+.++||+|.... ...+.+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~------------~~~~~~ 66 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPDA------------QFASWV 66 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CC-CCccceEEEEEECCEEEEEEEEECCCCCch------------hHHhcC
Confidence 4799999999999999998875542111 11 011100 0011 1235889999998421 124678
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--c--h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--R--S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~--~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.++ .+.++..+..++.... . + |+||+|+....... ....+...+........
T Consensus 67 ~~~ilv~d~~~~~----------sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~-v~~~~~~~~~~~~~~~~ 135 (158)
T cd04103 67 DAVIFVFSLENEA----------SFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRV-IDDARARQLCADMKRCS 135 (158)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcc-cCHHHHHHHHHHhCCCc
Confidence 9999999876433 2333332333333222 1 1 89999985321111 11222233333333457
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+||++|.|+..+|..+.+.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 8899999999999999998754
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-10 Score=109.07 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=97.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.|.+.|..|+||++|+.++....|.....+.+.-... ...+...+ ..+.+|||+|. +++..+...+.++...++..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~-~~~i~~~~~~v~l~iwDtaGq-e~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFK-IKTVELRGKKIRLQIWDTAGQ-ERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEE-EEEEEECCEEEEEEEEeCCCc-hhhHHHHHHHhcCCCEEEEE
Confidence 4789999999999999999988775433322210110 01122222 46789999995 45666766666655544333
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++++.+.+..+..|+.. +.... ....|+++|+||+|. .....
T Consensus 80 f----------------Dvtd~~Sf~~l~~w~~~------------------i~~~~-~~~~piilVgNK~DL--~~~~~ 122 (202)
T cd04120 80 Y----------------DITKKETFDDLPKWMKM------------------IDKYA-SEDAELLLVGNKLDC--ETDRE 122 (202)
T ss_pred E----------------ECcCHHHHHHHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--ccccc
Confidence 3 34555665555444332 22221 146899999999964 22122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
...+...+++... .+..++.+||++|.|+.++.+.....+.+
T Consensus 123 v~~~~~~~~a~~~-~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 123 ISRQQGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred cCHHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2233444444432 14678999999999999987766555443
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-10 Score=108.23 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=83.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCc---ccccCcccc-ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPF---CTIDPNENN-KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~---~T~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
+++|+++|.+|||||||+|+|++... ......+ +|....... .....+.++||||+.........+... ..+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~--~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEE--MKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHH--hCc
Confidence 36899999999999999999998542 1111112 233221110 112468999999997533221111111 124
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcCCCC----C-ccHHHHHHHhhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKMGPK----K-TDEGEKKMLLGR 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~~~~----~-~~~~~l~~l~~~ 240 (561)
..+|++++|.|... ...+ .+.+.+.....+ |.||+|+....... . .....+..+...
T Consensus 79 ~~~d~~l~v~~~~~--------------~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~ 144 (197)
T cd04104 79 SEYDFFIIISSTRF--------------SSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred cCcCEEEEEeCCCC--------------CHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence 67899999875421 1111 122233444333 99999995321110 0 011112222111
Q ss_pred ---------cCCCcEEEEEcc--CCCCHHHHHHHHHhhc
Q psy17315 241 ---------VGTNLKVGIVGV--PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ---------~~~~~~i~isg~--~~~Gks~l~~~l~~~~ 268 (561)
......+.+|+. .+.|...|..++...+
T Consensus 145 ~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred HHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 123456677776 4567777777666654
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=103.42 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=91.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcc-ccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNE-NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.+|||||||++++...... ..+..|....... .......+.+|||||...... +. -..++++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----l~---~~~~~~a 75 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR----LR---TLSYPQT 75 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh----hh---hhhccCC
Confidence 368999999999999999999875521 1121111110000 001123588999999854332 11 2246889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCCC---------CCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMGP---------KKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~~---------~~~~~~~l~~l 237 (561)
|++++|+|.+.++ .++.+. .+...+..... + |+||+|+.+.... ......+...+
T Consensus 76 ~~~ilvydit~~~----------Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (191)
T cd01875 76 NVFIICFSIASPS----------SYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGAL 145 (191)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 9999999876322 223332 22222222111 1 9999999643221 00111222223
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.........+.+||++|.|+..+++++.+..
T Consensus 146 a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 146 AKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2233334678999999999999999999875
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-10 Score=104.60 Aligned_cols=158 Identities=11% Similarity=0.111 Sum_probs=87.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc-ccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP-VRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp-~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
+|.+.|.+|+|||+|++.+++..+.....+.+.-.... ...+......+.+|||+|.++ ...+...+.+....++..+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-YLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-HHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999987654333222111100 011112234678999999654 4444444433332222111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh----hccCCceEEEecCChhhhhh
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN----LLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~----~l~~kP~iiv~NK~D~d~~~ 400 (561)
+.++.+.+..+..|+.+ +.... .....|+++|+||+|. ..
T Consensus 81 ----------------D~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~~~~piilv~nK~Dl--~~ 124 (168)
T cd04119 81 ----------------DVTDRQSFEALDSWLKE------------------MKQEGGPHGNMENIVVVVCANKIDL--TK 124 (168)
T ss_pred ----------------ECCCHHHHHhHHHHHHH------------------HHHhccccccCCCceEEEEEEchhc--cc
Confidence 22222333333333322 11111 1136899999999954 21
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+....++... +.+++++||+++.|+.++.+....
T Consensus 125 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 125 HRAVSEDEGRLWAESK--GFKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred ccccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 1222334444455443 577999999999999888655433
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=106.19 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=91.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|-+|||||||++++.+........|.......... .....+.||||||...... + ....+++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~----~---~~~~~~~ 84 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDN----V---RPLCYSD 84 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHH----H---HHHHcCC
Confidence 3478999999999999999999876522111121111111001 1124689999999643221 1 1234689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhh-HHHHHHHHHHhcc--h---hhccccccCcCCC---------CCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRN-LKLLETRIRDLRR--S---VDAKADSKKKMGP---------KKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~--~---v~NK~D~~~~~~~---------~~~~~~~l~~ 236 (561)
||++++|+|.+..+ .++. +..+..++..... + |+||+|+....+. ......+...
T Consensus 85 ad~vIlVyDit~~~----------Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 85 SDAVLLCFDISRPE----------TVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred CcEEEEEEECCChH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 99999999876322 2222 2333333333222 1 8999998642110 0111223333
Q ss_pred HhhhcCCCcEEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 237 LLGRVGTNLKVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
+-........+.+|+++|. |+..+|..+....
T Consensus 155 ~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 155 LAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 3333333346889999998 8999999988764
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-10 Score=108.61 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=96.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
+|.+.|.+|+||++|++.+.+..+.....+++ | .|.. ..+... ...+.+|||+|. +.+..+...+.++...++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~-~-~d~~~~~v~~~~~~~~~l~l~Dt~G~-~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI-G-VDFALKVIEWDPNTVVRLQLWDIAGQ-ERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-e-EEEEEEEEEECCCCEEEEEEEECCCc-hhhhhhHHHHhCCCCEEE
Confidence 68999999999999999999876543332221 2 1111 112222 245789999995 445555555554443332
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++++.+.+..+..|+.+ +............|+|+|+||+|. ...
T Consensus 79 lv~----------------D~t~~~s~~~~~~~~~~---------------i~~~~~~~~~~~~piilv~NK~Dl--~~~ 125 (201)
T cd04107 79 IVF----------------DVTRPSTFEAVLKWKAD---------------LDSKVTLPNGEPIPCLLLANKCDL--KKR 125 (201)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH---------------HHHhhcccCCCCCcEEEEEECCCc--ccc
Confidence 222 33444555555444432 000000111146899999999954 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
.....+++.++++.. ...+++++||++|.|+.++.+...+...+
T Consensus 126 ~~~~~~~~~~~~~~~-~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 126 LAKDGEQMDQFCKEN-GFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred cccCHHHHHHHHHHc-CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 233445666666654 12679999999999999987766555443
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=102.19 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCc-cccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPN-ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~-~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+||+++|-++||||||++++...... ..+..+...... ........+.+|||+|...... +. ...+++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~----~~---~~~~~~ 76 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----VR---PLSYPD 76 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh----hh---hhhcCC
Confidence 3478999999999999999999876522 111111111000 0011123589999999743221 11 234689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC---------CCCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l~~ 236 (561)
+|++++|+|.+.+ ..++.+ ..+...+...... |+||+|+.+..+ .......+...
T Consensus 77 ad~~ilvyDit~~----------~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 77 SDAVLICFDISRP----------ETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 9999999987632 233333 3333334332222 899999864211 00112222333
Q ss_pred HhhhcCCCcEEEEEccCCCC-HHHHHHHHHhh
Q psy17315 237 LLGRVGTNLKVGIVGVPNVG-KSTFFNVLTKR 267 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~G-ks~l~~~l~~~ 267 (561)
+.........+.+|+++|.| +..+|..+.+.
T Consensus 147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 33333333578999999998 99999988764
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-10 Score=99.95 Aligned_cols=146 Identities=18% Similarity=0.110 Sum_probs=85.8
Q ss_pred EEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc----cCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 101 ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
++|.+|+|||||+|+|.+..........+..+...... ....+.++||||....... ....++.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL-------RRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhH-------HHHHhcCCCEEE
Confidence 57999999999999999876421222111122222111 2457899999998643321 134458899999
Q ss_pred EEecccccchhhhccchhhHhhhHHHH----HHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLL----ETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
+|+|++... .......+ .........+ ++||+|......... ...............+.+
T Consensus 74 ~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 140 (157)
T cd00882 74 LVYDVTDRE----------SFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSE---EELAEQLAKELGVPYFET 140 (157)
T ss_pred EEEECcCHH----------HHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHH---HHHHHHHHhhcCCcEEEE
Confidence 999876311 11111111 0111111122 899999975432211 101222333455678999
Q ss_pred EccCCCCHHHHHHHHHh
Q psy17315 250 VGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~ 266 (561)
|+..+.|...++++|.+
T Consensus 141 s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 141 SAKTGENVEELFEELAE 157 (157)
T ss_pred ecCCCCChHHHHHHHhC
Confidence 99999999999998853
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-10 Score=105.94 Aligned_cols=158 Identities=12% Similarity=0.103 Sum_probs=86.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.++|.+|+||++|++++.+..+.... .++.+.. ....+.. ....+.+|||||..+ +..+...+.+.....+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~-~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY-DPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQ-FTAMRELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-CCcchhe-EEEEEEECCEEEEEEEEeCCCccc-chhhhHHHHhhCCEEEE
Confidence 46899999999999999999987654332 2211111 1111111 224678999999543 44444444433322211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..+... +.......+.|+++++||+|. ....
T Consensus 79 v~----------------~~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piiiv~nK~D~--~~~~ 122 (168)
T cd04177 79 VY----------------SVTSEASLNELGELREQ------------------VLRIKDSDNVPMVLVGNKADL--EDDR 122 (168)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhhCCCCCCEEEEEEChhc--cccC
Confidence 11 12222344433333221 111111247899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+...++.+.. ...+++++||+++.|+.++.++..+
T Consensus 123 ~~~~~~~~~~~~~~-~~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 123 QVSREDGVSLSQQW-GNVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred ccCHHHHHHHHHHc-CCceEEEeeCCCCCCHHHHHHHHHH
Confidence 22233333444433 1368999999999998887655443
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-10 Score=103.53 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=86.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.++|.+|+|||+|++.+....+.....+.. +..-....+.+.+ ..+.+|||||. ..+..+.....+....++.
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~l~i~D~~G~-~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI-GVDFTMKTLEIEGKRVKLQIWDTAGQ-ERFRTITQSYYRSANGAII 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc-ceEEEEEEEEECCEEEEEEEEECCCh-HHHHHHHHHHhccCCEEEE
Confidence 579999999999999999998765543322221 2100112232222 36889999995 3354444443332222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+...+..+..|+.. +.... ....|+++|+||+|. ....
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~p~ivv~nK~Dl--~~~~ 124 (165)
T cd01864 82 AY----------------DITRRSSFESVPHWIEE------------------VEKYG-ASNVVLLLIGNKCDL--EEQR 124 (165)
T ss_pred EE----------------ECcCHHHHHhHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--cccc
Confidence 11 12222333333333322 11111 136899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+...++++.. ....++++||++|.|+.++.+..
T Consensus 125 ~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 125 EVLFEEACTLAEKN-GMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred ccCHHHHHHHHHHc-CCcEEEEEECCCCCCHHHHHHHH
Confidence 33344455555443 13468999999999988875544
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-10 Score=106.30 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=100.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|..|+||++|+..+....+.... .++.|. .. ...+.. ....+.+|||+|. +++..+...+.++...+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~-~~t~~~~~~-~~~i~~~~~~~~l~iwDt~G~-~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPY-GYNMGIDYK-TTTILLDGRRVKLQLWDTSGQ-GRFCTIFRSYSRGAQGI 82 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCcceeEEE-EEEEEECCEEEEEEEEeCCCc-HHHHHHHHHHhcCCCEE
Confidence 468999999999999999999987654332 222121 10 011111 2246789999995 44666666665555444
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++++...+..+..|+.+ +.... ...|+|+|+||.|.. .
T Consensus 83 llVf----------------D~t~~~Sf~~~~~w~~~------------------i~~~~--~~~piilVGNK~DL~--~ 124 (189)
T cd04121 83 ILVY----------------DITNRWSFDGIDRWIKE------------------IDEHA--PGVPKILVGNRLHLA--F 124 (189)
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccch--h
Confidence 3333 44555666666555544 11111 368999999999643 2
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......++++++++.. +.+++.+||++|.|++++.+...+..
T Consensus 125 ~~~v~~~~~~~~a~~~--~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 125 KRQVATEQAQAYAERN--GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred ccCCCHHHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 2233355666776655 67899999999999988866555443
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-11 Score=127.43 Aligned_cols=155 Identities=24% Similarity=0.300 Sum_probs=91.2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
....++.+.|.+|+|||+|+|.+++.. ...++..+||+ |... .+.+.+..+.+|||||+++..+.++....+..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~-- 288 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEE--RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERS-- 288 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHH--
Confidence 466889999999999999999999873 33344455665 4432 23444567899999997542222222111000
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
+. .+..+|++..|++... ..+.++...+.. ...+|+++|+||+| +.
T Consensus 289 -----~~--------------~~~~aD~il~VvD~s~----------~~s~~~~~~l~~---~~~~piiiV~NK~D--L~ 334 (449)
T PRK05291 289 -----RE--------------AIEEADLVLLVLDASE----------PLTEEDDEILEE---LKDKPVIVVLNKAD--LT 334 (449)
T ss_pred -----HH--------------HHHhCCEEEEEecCCC----------CCChhHHHHHHh---cCCCCcEEEEEhhh--cc
Confidence 00 0122244444444211 122233444433 25799999999995 43
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.. .. .. .. .+.+++++||++|.|+++|.+...+.+
T Consensus 335 ~~-~~-~~------~~--~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 335 GE-ID-LE------EE--NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred cc-ch-hh------hc--cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 21 11 11 11 256789999999999999877665543
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-09 Score=100.13 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=88.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.+++++|.+|+|||||++++..........|.+......... ....+.++||||...... .. ...++.+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~---~~~~~~a~ 74 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER----LR---PLSYSKAH 74 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccc----cc---hhhcCCCC
Confidence 479999999999999999998544221111211111110011 123578999999753321 11 12357889
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch-----hhccccccCcCCCC-------CccHHHHHHHhhh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS-----VDAKADSKKKMGPK-------KTDEGEKKMLLGR 240 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~-----v~NK~D~~~~~~~~-------~~~~~~l~~l~~~ 240 (561)
++++|+|.+.. ..+..+. .+...+...... |+||+|+.+..... .........+...
T Consensus 75 ~~llv~~i~~~----------~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 75 VILIGFAVDTP----------DSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 99999976421 1233332 122223222111 89999986432110 1112223333333
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+....+.+|+++|.|++.++.++.+..
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 4444678999999999999999999874
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.9e-10 Score=103.57 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=87.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..++.+.|.+|+|||+|++.+.+..+.....++ .|. +.. ..+.. ...++.+|||+|.+ .+..+...+.+....+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t-~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~~~~~~~~~d~i 80 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGV-EFGARMITIDGKQIKLQIWDTAGQE-SFRSITRSYYRGAAGA 80 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cce-eEEEEEEEECCEEEEEEEEECCCcH-HHHHHHHHHhccCCEE
Confidence 368999999999999999999987543332222 121 111 11112 22468899999954 3444444433322222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+...+..+..|+.. +.... ....|+++|+||+|. ..
T Consensus 81 l~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~pvivv~nK~Dl--~~ 123 (168)
T cd01866 81 LLVY----------------DITRRETFNHLTSWLED------------------ARQHS-NSNMTIMLIGNKCDL--ES 123 (168)
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--cc
Confidence 1111 11222333333333322 11111 146899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
......+..+.++... +.+++++||+.+.|+.++....
T Consensus 124 ~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 124 RREVSYEEGEAFAKEH--GLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred ccCCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 2223344555555543 6789999999999998875443
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-10 Score=127.26 Aligned_cols=152 Identities=19% Similarity=0.098 Sum_probs=94.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+.|+++|.+|+|||||+|+|++.. ......+|+|.+..... ..+..+.+|||||... +.......+..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~-------f~~~~~~g~~~ 73 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK-------FISNAIAGGGG 73 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH-------HHHHHHhhhcc
Confidence 358999999999999999999854 22233467777654321 1234688999999632 22334556788
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHHHHHhhhc---CCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEKKMLLGRV---GTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l~~l~~~~---~~~ 244 (561)
+|++++|+|++.. ......+.+..+ .....+ ++||+|+.+..... .....+..+.... ...
T Consensus 74 aD~aILVVDa~~G-------~~~qT~ehl~il----~~lgi~~iIVVlNK~Dlv~~~~~~-~~~~ei~~~l~~~~~~~~~ 141 (581)
T TIGR00475 74 IDAALLVVDADEG-------VMTQTGEHLAVL----DLLGIPHTIVVITKADRVNEEEIK-RTEMFMKQILNSYIFLKNA 141 (581)
T ss_pred CCEEEEEEECCCC-------CcHHHHHHHHHH----HHcCCCeEEEEEECCCCCCHHHHH-HHHHHHHHHHHHhCCCCCC
Confidence 9999999988631 111122223222 222222 89999997432110 0112233333222 146
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+.+|.|+..+++.+.+.
T Consensus 142 ~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 142 KIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred cEEEEeCCCCCCchhHHHHHHHH
Confidence 78999999999999999888654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-10 Score=102.98 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=86.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh----hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI----INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~----~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
+|.+.|.+|+||++|++.+++..+.....+.+ + .+.. ..+.. ....+.+|||||.+ .+..+...+.+.....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~~~~~~~~~~~~ 78 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTI-G-VDFLEKQIFLRQSDEDVRLMLWDTAGQE-EFDAITKAYYRGAQAC 78 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcE-E-EEEEEEEEEEcCCCCEEEEEEeeCCchH-HHHHhHHHHhcCCCEE
Confidence 68999999999999999999876543332221 1 1111 11111 12468899999954 4555555554433332
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+.+.+..+..|+.. +... ....|+++|+||+|. ..
T Consensus 79 v~v~----------------d~~~~~s~~~l~~~~~~------------------~~~~--~~~~p~iiv~nK~Dl--~~ 120 (162)
T cd04106 79 ILVF----------------STTDRESFEAIESWKEK------------------VEAE--CGDIPMVLVQTKIDL--LD 120 (162)
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHh--CCCCCEEEEEEChhc--cc
Confidence 2221 12222333333333221 1111 147899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
......++..++.+.. +.+++++||+++.|++++.+.
T Consensus 121 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 121 QAVITNEEAEALAKRL--QLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred ccCCCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHH
Confidence 2222234444444443 578999999999998776443
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=121.38 Aligned_cols=153 Identities=15% Similarity=0.074 Sum_probs=87.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cc----------------cCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NK----------------VPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~----------------~~~~i~l~DtpG~~~~~ 155 (561)
++-|+++|.+|+|||||+|+|++.........|+|.+.... .. ...++.+|||||.....
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 45699999999999999999998764322223345431110 00 00248899999974322
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCC-----
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPK----- 227 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~----- 227 (561)
. + ....++.+|++++|+|++... ....+..+.. +.....+ ++||+|+.......
T Consensus 84 ~----l---~~~~~~~aD~~IlVvD~~~g~-------~~qt~e~i~~----l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f 145 (590)
T TIGR00491 84 N----L---RKRGGALADLAILIVDINEGF-------KPQTQEALNI----LRMYKTPFVVAANKIDRIPGWRSHEGRPF 145 (590)
T ss_pred H----H---HHHHHhhCCEEEEEEECCcCC-------CHhHHHHHHH----HHHcCCCEEEEEECCCccchhhhccCchH
Confidence 1 1 123457899999999876310 1111222221 2222223 89999997421100
Q ss_pred ---C-ccH----HHH--------HHHh-------------hhcCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 228 ---K-TDE----GEK--------KMLL-------------GRVGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 228 ---~-~~~----~~l--------~~l~-------------~~~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+ .+. ..+ ..+. ......+.+++||.+|.|++.|+.+|..
T Consensus 146 ~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 146 MESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0 000 000 0111 1112457899999999999999998854
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=123.58 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=96.4
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+++.|+++|.+|+|||||+++|++.....+..+|.|.+..... +.+..+.||||||...... .....++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~-------m~~rga~ 359 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA-------MRARGAQ 359 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchh-------HHHhhhh
Confidence 356788999999999999999999987755566778886654321 2245799999999754321 1223457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhh------hc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLG------RV 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~------~~ 241 (561)
.+|++++|+|++..- .....+.+. .......+ ++||+|+.... .......+.. ..
T Consensus 360 ~aDiaILVVdAddGv-------~~qT~e~i~----~a~~~~vPiIVviNKiDl~~a~-----~e~V~~eL~~~~~~~e~~ 423 (787)
T PRK05306 360 VTDIVVLVVAADDGV-------MPQTIEAIN----HAKAAGVPIIVAINKIDKPGAN-----PDRVKQELSEYGLVPEEW 423 (787)
T ss_pred hCCEEEEEEECCCCC-------CHhHHHHHH----HHHhcCCcEEEEEECccccccC-----HHHHHHHHHHhcccHHHh
Confidence 789999999876311 011111111 12222222 89999996421 0111111111 11
Q ss_pred -CCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 242 -GTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 242 -~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
...+.+.+||++|.|+..|+++|..
T Consensus 424 g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 424 GGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCCceEEEEeCCCCCCchHHHHhhhh
Confidence 2357899999999999999999874
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=100.65 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=100.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..|+.++|-.+|||||||++.+-......-.+-...+.... + -....++||||+|..+... -.-.++|+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs-------lipsY~Rd 94 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRD 94 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh-------hhhhhccC
Confidence 37899999999999999999985442211111111111110 1 1234699999999876553 23467899
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+.+++.|.|.+..+ .+++.+ .+.+.+.+-... |+||.|+....+...+.-+....-+ ..
T Consensus 95 s~vaviVyDit~~~----------Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel----~a 160 (221)
T KOG0094|consen 95 SSVAVIVYDITDRN----------SFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL----NA 160 (221)
T ss_pred CeEEEEEEeccccc----------hHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHh----Cc
Confidence 99999999876322 233333 333333333221 8999999977665432222221111 22
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDV 274 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v 274 (561)
.-+..|+++|.|+..||..+....+.....
T Consensus 161 ~f~etsak~g~NVk~lFrrIaa~l~~~~~~ 190 (221)
T KOG0094|consen 161 EFIETSAKAGENVKQLFRRIAAALPGMEVL 190 (221)
T ss_pred EEEEecccCCCCHHHHHHHHHHhccCcccc
Confidence 678999999999999999999987766553
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-10 Score=120.69 Aligned_cols=145 Identities=15% Similarity=0.075 Sum_probs=85.8
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCc----------------ccCCCcccccCcccc--ccCCeEEEEeCCCcccC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAA----------------AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~----------------~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~ 154 (561)
....++|+++|.+|+|||||+|+|++.... ....+|+|++..... ..+.++.|+||||...
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~- 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD- 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH-
Confidence 445689999999999999999999975311 112367777654322 2345789999999531
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
+.......+..+|++++|+|+... ......+ .-..+..+..+ +.||+|+..........
T Consensus 88 ------~~~~~~~~~~~~D~~ilVvda~~g-------~~~qt~~----~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~ 150 (409)
T CHL00071 88 ------YVKNMITGAAQMDGAILVVSAADG-------PMPQTKE----HILLAKQVGVPNIVVFLNKEDQVDDEELLELV 150 (409)
T ss_pred ------HHHHHHHHHHhCCEEEEEEECCCC-------CcHHHHH----HHHHHHHcCCCEEEEEEEccCCCCHHHHHHHH
Confidence 222335567889999999987521 0001111 11222333332 69999997432211111
Q ss_pred HHHHHHHhhhcC----CCcEEEEEccCCC
Q psy17315 231 EGEKKMLLGRVG----TNLKVGIVGVPNV 255 (561)
Q Consensus 231 ~~~l~~l~~~~~----~~~~i~isg~~~~ 255 (561)
..++...+.... ..+.+++||.+|.
T Consensus 151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 151 ELEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 123333433322 2567999999885
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-10 Score=103.78 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=85.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+|||+|++.+.+..+.....+...... ...+.. ....+.+|||||.. .+..+...........+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~l~D~~g~~-~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF--SKIIRYKGQDYHLEIVDTAGQD-EYSILPQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE--EEEEEECCEEEEEEEEECCChH-hhHHHHHHHHhhCCEEEE
Confidence 4689999999999999999998765433333211110 111222 22357899999964 354444443322222111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..+.. .+++... ....|+|+|+||+|... ..
T Consensus 79 v~----------------d~~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~p~ilv~NK~Dl~~--~~ 122 (180)
T cd04137 79 VY----------------SVTSRKSFEVVKVIYD-----------------KILDMLG-KESVPIVLVGNKSDLHT--QR 122 (180)
T ss_pred EE----------------ECCCHHHHHHHHHHHH-----------------HHHHhcC-CCCCCEEEEEEchhhhh--cC
Confidence 11 1111122222222111 1122111 24689999999996532 11
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
....+.+..+.+.. +.+++++||+++.|+.++.+.....+
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 123 QVSTEEGKELAESW--GAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred ccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11223333444333 56899999999999988866554443
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-10 Score=106.99 Aligned_cols=151 Identities=19% Similarity=0.127 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC--ccc-CCCcccccCc---------------------------c------c--ccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA--AAE-NFPFCTIDPN---------------------------E------N--NKV 139 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~--~~~-~~~~~T~~~~---------------------------~------~--~~~ 139 (561)
.||++|..++|||||+.+|++... ... -.-|.|.... . + ...
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999987521 000 0001111000 0 0 000
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hh
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VD 215 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~ 215 (561)
...+.||||||.. .+...++..+..+|++++|+|++... ......+.+.. +.... .+ ++
T Consensus 82 ~~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~------~~~~t~~~l~~----~~~~~~~~iiivv 144 (203)
T cd01888 82 VRHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPC------PQPQTSEHLAA----LEIMGLKHIIIVQ 144 (203)
T ss_pred ccEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCC------CCcchHHHHHH----HHHcCCCcEEEEE
Confidence 1578999999952 23345567778899999999876310 00111112221 11111 12 89
Q ss_pred ccccccCcCCCCCccHHHHHHHhhhc-----CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 216 AKADSKKKMGPKKTDEGEKKMLLGRV-----GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 216 NK~D~~~~~~~~~~~~~~l~~l~~~~-----~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
||+|+..... ....++.+.... ...+.+.+|+++|.|++.|++++.+..+
T Consensus 145 NK~Dl~~~~~----~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 145 NKIDLVKEEQ----ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred EchhccCHHH----HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 9999973211 111122222222 2456899999999999999999988653
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.8e-10 Score=123.50 Aligned_cols=154 Identities=11% Similarity=0.029 Sum_probs=95.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--c----cCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--K----VPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
.++..|+++|.+|+|||||+++|++.....+..+|.|.+..... . ....+.||||||..... .....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~-------~mr~r 314 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS-------SMRSR 314 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH-------HHHHH
Confidence 46679999999999999999999987755555677776543221 1 13579999999974322 11233
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHH---hhhc
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKML---LGRV 241 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l---~~~~ 241 (561)
.++.+|++++|+|+...- .....+.+.. +.....+ ++||+|+.... . ......+... ....
T Consensus 315 g~~~aDiaILVVDA~dGv-------~~QT~E~I~~----~k~~~iPiIVViNKiDl~~~~-~-e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 315 GANVTDIAILIIAADDGV-------KPQTIEAINY----IQAANVPIIVAINKIDKANAN-T-ERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HHHHCCEEEEEEECcCCC-------ChhhHHHHHH----HHhcCceEEEEEECCCccccC-H-HHHHHHHHHhccchHhh
Confidence 567899999999875311 1111222221 2222222 89999997421 0 0000111111 0111
Q ss_pred -CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 -GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 -~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+.+.+||++|.|+..|+.++...
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 23468999999999999999998763
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-10 Score=124.55 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=93.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCccccc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
-|+++|.+++|||||+|+|+|.. .......|.|.+...... .+..+.+|||||... +....+..+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------fi~~m~~g~~~ 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------FLSNMLAGVGG 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------HHHHHHHHhhc
Confidence 48999999999999999999864 223344678876533211 234588999999732 22233555788
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----hhhccccccCcCCCCCccHHHHHHHhhhc--CCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----SVDAKADSKKKMGPKKTDEGEKKMLLGRV--GTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~v~NK~D~~~~~~~~~~~~~~l~~l~~~~--~~~~ 245 (561)
+|++++|+|+... ......+.+. .+..+.. .|+||+|+.+...... ....+....... ...+
T Consensus 75 ~D~~lLVVda~eg-------~~~qT~ehl~----il~~lgi~~iIVVlNKiDlv~~~~~~~-v~~ei~~~l~~~~~~~~~ 142 (614)
T PRK10512 75 IDHALLVVACDDG-------VMAQTREHLA----ILQLTGNPMLTVALTKADRVDEARIAE-VRRQVKAVLREYGFAEAK 142 (614)
T ss_pred CCEEEEEEECCCC-------CcHHHHHHHH----HHHHcCCCeEEEEEECCccCCHHHHHH-HHHHHHHHHHhcCCCCCc
Confidence 9999999987521 0111122222 2222222 2899999974221110 111222222221 2357
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+++|+.+|.|+.+|+++|.+.
T Consensus 143 ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 143 LFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred EEEEeCCCCCCCHHHHHHHHHh
Confidence 8999999999999999999864
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-10 Score=107.94 Aligned_cols=154 Identities=20% Similarity=0.169 Sum_probs=77.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhh-hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEII-NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.|++.|.+|+|||+|++.+++.....-.....+++ ++... .+.+. +..+.+|||||.++....+... .++.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~-~~~a----- 75 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAG-AGGI----- 75 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhh-hhcC-----
Confidence 58999999999999999998752111000011122 22211 12222 4578899999975533222211 1111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
|++..|++... .+..+....+........+|+++|+||+|.......
T Consensus 76 -----------------------d~ii~V~d~~~----------~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 76 -----------------------DLVLLVVAADE----------GIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred -----------------------CEEEEEEECCC----------CccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH
Confidence 22222222100 111111222221221123599999999954211101
Q ss_pred cchHHHHHHHHHhc-CCCCeEEeechhhhhhhCCCCH
Q psy17315 403 NKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 403 ~~~~~~l~~~~~~~-~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
....+++.+.+... ..+.+++++||+++.|++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 123 ELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHH
Confidence 12234444544431 1256899999999999887643
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=97.47 Aligned_cols=158 Identities=20% Similarity=0.185 Sum_probs=111.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-----CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-----AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-----~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
...+||.+.|-+|||||||+|.+...+ -.+-..-+.|++.... ..-..+++|||+|..+..+- +-.|
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERFqsL----g~aF--- 78 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERFQSL----GVAF--- 78 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHhhhc----ccce---
Confidence 456899999999999999999998765 2244456778776542 22246899999999776642 2333
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----------hhccccccCcCCCCCccHHHHHHHh
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----------VDAKADSKKKMGPKKTDEGEKKMLL 238 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------v~NK~D~~~~~~~~~~~~~~l~~l~ 238 (561)
.|.||+.++|.|. +....+..++.+++++.....+ ++||+|......-.. ..+.....=
T Consensus 79 YRgaDcCvlvydv----------~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V-S~~~Aq~WC 147 (210)
T KOG0394|consen 79 YRGADCCVLVYDV----------NNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV-SEKKAQTWC 147 (210)
T ss_pred ecCCceEEEEeec----------CChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee-eHHHHHHHH
Confidence 6999999999965 4455677888887777655443 899999975321111 112222333
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
...+..+.+.+||+.+.++...|..++.+...
T Consensus 148 ~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 148 KSKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HhcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 34467788999999999999999999887543
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=101.19 Aligned_cols=154 Identities=15% Similarity=0.192 Sum_probs=86.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
++.+.|.+|+||++|++.+.+..+.....+. .+. ..+. ..+......+.+|||+|.++ +..+.....+....++..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHT-IGVEFGSKIIRVGGKRVKLQIWDTAGQER-FRSVTRSYYRGAAGALLV 79 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeEEEEEEEECCEEEEEEEEECcchHH-HHHhHHHHhcCCCEEEEE
Confidence 6899999999999999999987654332222 121 1111 11111224678999999643 444433333322222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+......+..++.. +.... ....|+++|+||+|. .....
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~iivv~nK~D~--~~~~~ 122 (161)
T cd04113 80 Y----------------DITNRTSFEALPTWLSD------------------ARALA-SPNIVVILVGNKSDL--ADQRE 122 (161)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhC-CCCCeEEEEEEchhc--chhcc
Confidence 1 12222333333333222 11111 147899999999954 32223
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+.+..++... +.+++.+||+++.|+.++.+..
T Consensus 123 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 123 VTFLEASRFAQEN--GLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred CCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 3344555555554 5789999999999998875544
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=102.70 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=85.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+||++|++++.+..|.....+.+.-.... ..+... ...+.+|||+|.++ +..+...+.++..-++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEM-ERFEILGVPFSLQLWDTAGQER-FKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEE-EEEEECCEEEEEEEEeCCChHH-HHhhHHHHhcCCCEEEEE
Confidence 58899999999999999999987765443332111110 112111 24588999999643 555544444333222221
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.+ +.....-...|+++|+||+|. .+...
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~iilVgnK~Dl--~~~~~ 123 (170)
T cd04108 80 F----------------DLTDVASLEHTRQWLED------------------ALKENDPSSVLLFLVGTKKDL--SSPAQ 123 (170)
T ss_pred E----------------ECcCHHHHHHHHHHHHH------------------HHHhcCCCCCeEEEEEEChhc--Ccccc
Confidence 1 11222333333333221 111111023578999999954 22111
Q ss_pred --chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 404 --KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 404 --~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
...+...++.... +.+++.+||++|.|+.++.+...+
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~e~Sa~~g~~v~~lf~~l~~ 162 (170)
T cd04108 124 YALMEQDAIKLAAEM--QAEYWSVSALSGENVREFFFRVAA 162 (170)
T ss_pred ccccHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 1122333444433 467899999999999888655443
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.4e-10 Score=102.31 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=83.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
+|.+.|.+|+|||+|++.+....+.....+....+.... ..+......+.+|||+|.+ .+..+...+.+....++..+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE-RFQTMHASYYHKAHACILVF 80 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch-hhhhhhHHHhCCCCEEEEEE
Confidence 689999999999999999988765433322211111000 1111122457899999954 45555444433332221111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
+..+......+..|+.. +... ....|+++|+||+|.+..
T Consensus 81 ----------------d~~~~~s~~~~~~~~~~------------------i~~~--~~~~p~ivv~nK~Dl~~~----- 119 (161)
T cd04124 81 ----------------DVTRKITYKNLSKWYEE------------------LREY--RPEIPCIVVANKIDLDPS----- 119 (161)
T ss_pred ----------------ECCCHHHHHHHHHHHHH------------------HHHh--CCCCcEEEEEECccCchh-----
Confidence 11112222222222211 1111 136899999999964211
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
..++..++.... +.+++++||++|.|+.++.+...+.
T Consensus 120 ~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 120 VTQKKFNFAEKH--NLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred HHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 112223333332 5789999999999998886655443
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-10 Score=102.06 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=106.5
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
....++|.++|+-|+||||++..|...+ ..+.|.-|.-.+... +.+..+.+||.-|..+-++ -+..+.++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~--ykn~~f~vWDvGGq~k~R~-------lW~~Y~~~ 84 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVE--YKNISFTVWDVGGQEKLRP-------LWKHYFQN 84 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEE--EcceEEEEEecCCCccccc-------chhhhccC
Confidence 3456899999999999999999998766 666666665555433 3466799999999854332 34556789
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch----hhccccccCcCCCCCc-cHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS----VDAKADSKKKMGPKKT-DEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~----v~NK~D~~~~~~~~~~-~~~~l~~l~~~~~~~ 244 (561)
.+.+++|||+++++ ...+.-+.+...+.+.. .. ++||.|.+.++.+.+. ..-.+..+.. ..+
T Consensus 85 t~~lIfVvDS~Dr~---------Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~--~~w 153 (181)
T KOG0070|consen 85 TQGLIFVVDSSDRE---------RIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS--RNW 153 (181)
T ss_pred CcEEEEEEeCCcHH---------HHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC--CCc
Confidence 99999999988533 22233333333333321 11 7999999977664321 1111222222 678
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..-++++.+|.|+.+.++++.+..
T Consensus 154 ~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 154 HIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred EEeeccccccccHHHHHHHHHHHH
Confidence 889999999999999999998763
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-09 Score=100.65 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=109.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||.|+-+++.+.|....-++. | ++-. +.+.+. ...|.+|||+| ++.+..+.+.+++++..++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti-G-vefg~r~~~id~k~IKlqiwDtaG-qe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI-G-VEFGARMVTIDGKQIKLQIWDTAG-QESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcccccccee-e-eeeceeEEEEcCceEEEEEEecCC-cHHHHHHHHHHhccCcceE
Confidence 468899999999999999999987653322211 1 1100 122222 24578999999 5668888888888877766
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ +|++.+...++-.||++ ++... ..+.-++++.||+|.+. .
T Consensus 84 LVy----------------dit~r~sF~hL~~wL~D------------------~rq~~-~~NmvImLiGNKsDL~~--r 126 (216)
T KOG0098|consen 84 LVY----------------DITRRESFNHLTSWLED------------------ARQHS-NENMVIMLIGNKSDLEA--R 126 (216)
T ss_pred EEE----------------EccchhhHHHHHHHHHH------------------HHHhc-CCCcEEEEEcchhhhhc--c
Confidence 655 67888999999888887 22221 14677889999995543 2
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....++-+.+++++ +..+..+||++++|++++......
T Consensus 127 R~Vs~EEGeaFA~eh--gLifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 127 REVSKEEGEAFAREH--GLIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred ccccHHHHHHHHHHc--CceeehhhhhhhhhHHHHHHHHHH
Confidence 344556777788876 777889999999998887554433
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=105.52 Aligned_cols=160 Identities=17% Similarity=0.234 Sum_probs=91.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.++|.+|+|||+|++.+.+..+.....+++.... ....+... ...+.+|||||. +.+..+...+.+....++
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~l~l~D~~G~-~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF-KIRTVEINGERVKLQIWDTAGQ-ERFRTITSTYYRGTHGVI 83 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccccee-EEEEEEECCEEEEEEEEeCCCc-hhHHHHHHHHhCCCcEEE
Confidence 36899999999999999999998865433332221111 01122222 235789999995 335555544443332222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|+.. +.... ...|+++|+||+|. ...
T Consensus 84 lv~----------------D~~~~~s~~~~~~~~~~------------------i~~~~--~~~piivVgNK~Dl--~~~ 125 (199)
T cd04110 84 VVY----------------DVTNGESFVNVKRWLQE------------------IEQNC--DDVCKVLVGNKNDD--PER 125 (199)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccc--ccc
Confidence 111 22333444434333322 11111 35799999999954 321
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+...+++... +.+++++||++|.|+.++.+.....++
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 126 KVVETEDAYKFAGQM--GISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred cccCHHHHHHHHHHc--CCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 222234444555443 578999999999999988766655443
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-10 Score=114.63 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=81.2
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhh-hcCCCCc-----cCCC-ChHHHHHHHHHHHhcCCCc--cccccccC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQIL-ISDKPTW-----GDGD-GPKAPKRRKQHLSDKLRPK--ADSKKKMG 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~-~~~k~~l-----~DL~-~~~~~~~w~~~l~~~~~~~--~~~~~~~~ 77 (561)
+..+-|.|++.| ....+ .+++..... ..+.|.+ +||+ +....+.|.+.++..+..+ +++..+.+
T Consensus 82 D~vllV~d~~~p------~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 82 DQAVLVFAAKEP------DFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred CEEEEEEECCCC------CCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 456889999988 43322 123311111 1234544 9998 5556677888887766554 56665544
Q ss_pred CCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-------ccccCccccccCCeEEEEeCC
Q psy17315 78 PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-------CTIDPNENNKVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-------~T~~~~~~~~~~~~i~l~Dtp 149 (561)
..... ... .+..++++|.||||||||+|+|.+.. ..++..++ +|+.... ...+...+++|||
T Consensus 155 i~~L~--------~~l-~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~-~~~~~~~~~~Dtp 224 (298)
T PRK00098 155 LDELK--------PLL-AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVEL-YDLPGGGLLIDTP 224 (298)
T ss_pred HHHHH--------hhc-cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEE-EEcCCCcEEEECC
Confidence 33211 111 24579999999999999999999876 55555554 4544322 2334557999999
Q ss_pred Cccc
Q psy17315 150 GLVK 153 (561)
Q Consensus 150 G~~~ 153 (561)
|+..
T Consensus 225 G~~~ 228 (298)
T PRK00098 225 GFSS 228 (298)
T ss_pred CcCc
Confidence 9974
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.1e-11 Score=126.12 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=42.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh-HhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN-EELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~-~el~l~Dt~Gi~ 303 (561)
.+.++++|.+|+|||+|+|.|++..+...+.++ .|.||.. .+.+.+ ..+.+|||||+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~--tTld~~~~~i~l~~~~~~~l~DTaG~~ 256 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLF--ATLDPTLRRIDVADVGETVLADTVGFI 256 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCC--CCcCCceEEEEeCCCCeEEEEecCccc
Confidence 368999999999999999999987554434433 3456653 344444 378899999983
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.3e-10 Score=117.14 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=94.8
Q ss_pred hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-------C---------cccCCCcccccCcccc--ccCCeEEEEeCCCc
Q psy17315 90 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-------A---------AAENFPFCTIDPNENN--KVPAFLNVVDIAGL 151 (561)
Q Consensus 90 ~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-------~---------~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~ 151 (561)
..+....++|+++|.+|+|||||+++|++.. . ......|+|.+..... ..+.++.|+||||.
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 3445566899999999999999999998621 1 0111456666643221 22457899999997
Q ss_pred ccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCC
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPK 227 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~ 227 (561)
.. +.......+..+|++++|+|+...- .....+.+ ..+.....+ +.||+|+......-
T Consensus 86 ~~-------f~~~~~~~~~~aD~~llVvda~~g~-------~~qt~e~l----~~~~~~gi~~iivvvNK~Dl~~~~~~~ 147 (396)
T PRK12735 86 AD-------YVKNMITGAAQMDGAILVVSAADGP-------MPQTREHI----LLARQVGVPYIVVFLNKCDMVDDEELL 147 (396)
T ss_pred HH-------HHHHHHhhhccCCEEEEEEECCCCC-------chhHHHHH----HHHHHcCCCeEEEEEEecCCcchHHHH
Confidence 42 2233345677899999999875310 01111111 122233333 48999997421111
Q ss_pred CccHHHHHHHhhhcC----CCcEEEEEccCCC----------CHHHHHHHHHhh
Q psy17315 228 KTDEGEKKMLLGRVG----TNLKVGIVGVPNV----------GKSTFFNVLTKR 267 (561)
Q Consensus 228 ~~~~~~l~~l~~~~~----~~~~i~isg~~~~----------Gks~l~~~l~~~ 267 (561)
.....++..++.... ..+.+.+||.+|. |..+|+++|.+.
T Consensus 148 ~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 148 ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 111123444443332 3567999999983 677888888764
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=102.17 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=89.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+....+.....+.+ |. +.. ..+... ...+.+|||+|. +++..+...+.+.....+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~i~D~~G~-~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-GV-EFLNKDLEVDGHFVTLQIWDTAGQ-ERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce-ee-EEEEEEEEECCeEEEEEEEeCCCh-HHHHHhHHHHhcCCCEEE
Confidence 579999999999999999999876654433322 21 111 112222 235788999995 445555555544333222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..|..+ -.. ..........|+++|+||+|.. .
T Consensus 83 ~v~----------------d~~~~~s~~~~~~~~~~--------------~~~-~~~~~~~~~~piilv~nK~Dl~--~- 128 (170)
T cd04116 83 LTF----------------AVDDSQSFQNLSNWKKE--------------FIY-YADVKEPESFPFVVLGNKNDIP--E- 128 (170)
T ss_pred EEE----------------ECCCHHHHHhHHHHHHH--------------HHH-hcccccCCCCcEEEEEECcccc--c-
Confidence 111 22333444433333222 000 0000011357999999999642 2
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+++.++++... ..+++++||++|.|+.++.+..
T Consensus 129 ~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 129 RQVSTEEAQAWCRENG-DYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred cccCHHHHHHHHHHCC-CCeEEEEECCCCCCHHHHHHHH
Confidence 2333456666665541 3578999999999988875543
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=104.53 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=88.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+|||+|++.+....+....+.++.|..--...+...+ ..+.+|||+|.+ +...+...+.+....++..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE-RYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch-hhhhhhHhhcCCCCEEEEE
Confidence 6899999999999999999988765433333222210011222222 346799999953 3444444433222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
+ ++.+.+.+..+..|+.. +.... ...|+++|+||+|......
T Consensus 81 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~piilv~nK~Dl~~~~~~~ 124 (193)
T cd04118 81 Y----------------DLTDSSSFERAKFWVKE------------------LQNLE--EHCKIYLCGTKSDLIEQDRSL 124 (193)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHhcC--CCCCEEEEEEccccccccccc
Confidence 1 11222222222222221 11111 3689999999996421110
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
.....+++.++.... +.+++++||+++.|+.+|.+...+.+.+
T Consensus 125 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 125 RQVDFHDVQDFADEI--KAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred CccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111123444544443 5778999999999999887766555543
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=103.13 Aligned_cols=149 Identities=18% Similarity=0.110 Sum_probs=90.3
Q ss_pred EEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 102 VGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 102 vG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
+|.+|||||||++++...... ..+..|.+....... .....+.+|||||...... + ....++.+|++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~----l---~~~~~~~ad~~il 73 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG----L---RDGYYIQGQCAII 73 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh----h---hHHHhcCCCEEEE
Confidence 589999999999999865421 222222222211101 1234689999999854331 1 1235689999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
|+|.+.++ .+.++..+..++...... |+||+|+..+.- . .... .+ ........+.+|++
T Consensus 74 V~D~t~~~----------S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v--~--~~~~-~~-~~~~~~~~~e~SAk 137 (200)
T smart00176 74 MFDVTARV----------TYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV--K--AKSI-TF-HRKKNLQYYDISAK 137 (200)
T ss_pred EEECCChH----------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC--C--HHHH-HH-HHHcCCEEEEEeCC
Confidence 99886322 223333333334332222 899999864321 1 1112 11 11234567999999
Q ss_pred CCCCHHHHHHHHHhhccCCCc
Q psy17315 253 PNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~~~~~~~ 273 (561)
+|.|+..+|+++....+....
T Consensus 138 ~~~~v~~~F~~l~~~i~~~~~ 158 (200)
T smart00176 138 SNYNFEKPFLWLARKLIGDPN 158 (200)
T ss_pred CCCCHHHHHHHHHHHHHhccc
Confidence 999999999999988655433
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=106.39 Aligned_cols=158 Identities=14% Similarity=0.143 Sum_probs=91.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
++.+.|.+|+|||+|++.+.+..|.....++. | .|.. +.+... ...+.+|||+|.+ ....+...+.+....++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~-~-~d~~~~~i~~~~~~~~~~~i~Dt~G~~-~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTI-G-LDFFSKRVTLPGNLNVTLQVWDIGGQS-IGGKMLDKYIYGAHAVF 78 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCce-e-EEEEEEEEEeCCCCEEEEEEEECCCcH-HHHHHHHHHhhcCCEEE
Confidence 68999999999999999999886654433321 1 2221 122221 2467899999953 34444444443333222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh--ccCCceEEEecCChhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL--LTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~--l~~kP~iiv~NK~D~d~~ 399 (561)
..+ ++.+.+.+..+..|+.. +..... ....|+++|+||+|. .
T Consensus 79 lV~----------------D~t~~~s~~~~~~w~~~------------------l~~~~~~~~~~~piilVgNK~DL--~ 122 (215)
T cd04109 79 LVY----------------DVTNSQSFENLEDWYSM------------------VRKVLKSSETQPLVVLVGNKTDL--E 122 (215)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhccccCCCceEEEEEECccc--c
Confidence 222 23333444444444332 111110 124579999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.......++..++.... +.+.+++||++|.|+.++.+.....+
T Consensus 123 ~~~~v~~~~~~~~~~~~--~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 123 HNRTVKDDKHARFAQAN--GMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred cccccCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 22233334455555443 56789999999999999876655443
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-10 Score=123.42 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHHhcchhhccccccCcCCCCCccH-------HHHHHHh-----hhcCCCcEEEEEccCCCCHHHHHHHH
Q psy17315 197 WRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDE-------GEKKMLL-----GRVGTNLKVGIVGVPNVGKSTFFNVL 264 (561)
Q Consensus 197 ~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~-------~~l~~l~-----~~~~~~~~i~isg~~~~Gks~l~~~l 264 (561)
.+.++.+.+.+.++...+---+|-++...+..... ..+++++ .......++.+.|.+|+|||+|+|.+
T Consensus 144 s~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L 223 (442)
T TIGR00450 144 DQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNAL 223 (442)
T ss_pred HHHHHHHHHHHHHHHHHeeEECCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHH
Confidence 44555566666666555555677775432111001 1112222 22356789999999999999999999
Q ss_pred HhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCC
Q psy17315 265 TKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHI 342 (561)
Q Consensus 265 ~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i 342 (561)
++. ....++..+||+ |... .+.+.+..+.+|||||+++..+.+++........ + +
T Consensus 224 ~~~--~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~----~-----------------~ 280 (442)
T TIGR00450 224 LKQ--DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK----A-----------------I 280 (442)
T ss_pred hCC--CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH----H-----------------H
Confidence 986 334455566775 3332 2344456788999999854333332221110000 0 1
Q ss_pred ChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeE
Q psy17315 343 GHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATI 422 (561)
Q Consensus 343 ~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~v 422 (561)
..+|++..|.+... ..+.++. ++..... ..+|+++|+||+|. .. . . .+ ++.+.. +.++
T Consensus 281 ~~aD~il~V~D~s~----------~~s~~~~-~l~~~~~-~~~piIlV~NK~Dl--~~-~-~-~~---~~~~~~--~~~~ 338 (442)
T TIGR00450 281 KQADLVIYVLDASQ----------PLTKDDF-LIIDLNK-SKKPFILVLNKIDL--KI-N-S-LE---FFVSSK--VLNS 338 (442)
T ss_pred hhCCEEEEEEECCC----------CCChhHH-HHHHHhh-CCCCEEEEEECccC--CC-c-c-hh---hhhhhc--CCce
Confidence 11233333322110 1122222 3333322 47899999999954 32 1 1 11 222221 4678
Q ss_pred EeechhhhhhhCCCCHHHHH
Q psy17315 423 IPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 423 i~iSA~~~~gl~~L~~~~~~ 442 (561)
+.+||++ .|+.++.+...+
T Consensus 339 ~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 339 SNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred EEEEEec-CCHHHHHHHHHH
Confidence 9999998 466666544433
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.2e-10 Score=115.24 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=46.0
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hhhh-HhhhcccHHHHH
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EIIN-EELRLKDVEHIE 303 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~~~-~el~l~Dt~Gi~ 303 (561)
+..-..|.++|.+|+|||||++.|++..+..+.++++ |.+|.... .+.+ .++.+|||||+.
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fT--T~~p~ig~v~~~~~~~~~i~D~PGli 216 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT--TLVPNLGVVRVDDGRSFVIADIPGLI 216 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCC--ccCCEEEEEEeCCceEEEEEeCCCcc
Confidence 3455779999999999999999999987666666653 34565543 3333 578999999974
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=99.67 Aligned_cols=156 Identities=16% Similarity=0.229 Sum_probs=85.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
++.+.|.+|+||++|++.+.+..+.....+.+.-+.. ...+...+ ..+.+|||+|.. .+..+.....+....++..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~-~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFK-TKTIEVDGKRVKLQIWDTAGQE-RFRSITSSYYRGAVGALLV 79 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE-EEEEEECCEEEEEEEEECCChH-HHHHHHHHHhCCCCEEEEE
Confidence 6899999999999999999988653333222111110 11222222 367899999954 3444444433222211111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+...+..+..|+.. +..... ...|+++|+||+|. .....
T Consensus 80 ~----------------d~~~~~s~~~~~~~l~~------------------~~~~~~-~~~pivvv~nK~D~--~~~~~ 122 (164)
T smart00175 80 Y----------------DITNRESFENLKNWLKE------------------LREYAD-PNVVIMLVGNKSDL--EDQRQ 122 (164)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEEchhc--ccccC
Confidence 1 11222222222222221 111111 36899999999954 32122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
...+.+.++.+.. +.+++++||+++.|+.++.+...+
T Consensus 123 ~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 123 VSREEAEAFAEEH--GLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred CCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 2334455555443 578999999999998888655443
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=103.26 Aligned_cols=62 Identities=5% Similarity=-0.039 Sum_probs=40.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
...|+++|+||+|.. .......+.+.+++... .+.+++++||++|.|+.+|.+...+.++..
T Consensus 115 ~~~piiivgNK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 115 KEPPIVVVGNKRDQQ--RHRFAPRHVLSVLVRKS-WKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCEEEEEECcccc--ccccccHHHHHHHHHHh-cCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 468999999999652 21122223344443322 157899999999999999977766655443
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=99.63 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=85.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+|||+|++.+.+..+.....+. .|. .... ..+......+.+|||||- +++......+.++...++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~v~~~~~~~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQEST-IGAAFLTQTVNLDDTTVKFEIWDTAGQ-ERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceeEEEEEEEECCEEEEEEEEeCCch-HHHHHHHHHHhccCCEEEE
Confidence 47899999999999999999998654422222 222 1110 112222346789999994 3344444444332222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+.+..+..++.. +..... ...|+++++||+|. ....
T Consensus 80 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~~iivv~nK~D~--~~~~ 122 (163)
T cd01860 80 VY----------------DITSEESFEKAKSWVKE------------------LQRNAS-PNIIIALVGNKADL--ESKR 122 (163)
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECccc--cccC
Confidence 11 11122222222222211 222211 46899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+.+.++.... +.+++++||++|.|+.++.+..
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 123 QVSTEEAQEYADEN--GLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred cCCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 22344455555544 5789999999999988875543
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.5e-09 Score=100.88 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=89.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||++||.+|||||||++++++......-.|.+......... ....+.+|||+|...... +. ...++.+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~----l~---~~~~~~~d 74 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN----VR---PLAYPDSD 74 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH----Hh---HHhccCCC
Confidence 589999999999999999999765322212221111110011 123588999999753221 11 12468999
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC---------CCCccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l~~l~ 238 (561)
++++|+|.+..+ .++.+ ..+..++...... |+||+|+..... .......+-..+.
T Consensus 75 ~illvfdis~~~----------Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 75 AVLICFDISRPE----------TLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 999999876322 22222 2222223222111 899999964311 0011122223333
Q ss_pred hhcCCCcEEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 239 GRVGTNLKVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
...+....+.+|++++. |+..+|.......
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 33333467889999988 5999999988764
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=99.33 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=84.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+|||+|++.+....+.....+.+.... ....+.. ....+.+|||+|. +.+..+...+......++..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASF-FQKTVNIGGKRIDLAIWDTAGQ-ERYHALGPIYYRDADGAILV 79 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeE-EEEEEEECCEEEEEEEEECCch-HHHHHhhHHHhccCCEEEEE
Confidence 689999999999999999998865433222211111 0011211 2235889999994 33444444433222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.+ +..... ..+|+++|+||+|. .....
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piiiv~nK~D~--~~~~~ 122 (162)
T cd04123 80 Y----------------DITDADSFQKVKKWIKE------------------LKQMRG-NNISLVIVGNKIDL--ERQRV 122 (162)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECccc--ccccC
Confidence 1 11222333322222211 221211 26899999999954 32122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+.+.++.... +.+++++||+++.|+.++.+..
T Consensus 123 ~~~~~~~~~~~~~--~~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 123 VSKSEAEEYAKSV--GAKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred CCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 2234444554443 6778999999999998875543
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-10 Score=116.18 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=65.9
Q ss_pred cCCCChH---HHHHHHHHHHhcCCCc--cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-
Q psy17315 47 GDGDGPK---APKRRKQHLSDKLRPK--ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS- 120 (561)
Q Consensus 47 ~DL~~~~---~~~~w~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~- 120 (561)
+||++.. ....|++.++..+..+ +++..+.+....... .. ...++++|.||||||||||+|.+..
T Consensus 160 ~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~----L~-----~ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 160 IDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAA----LT-----GRISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred ccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHH----Hh-----hCCEEEECCCCCCHHHHHHHhccccc
Confidence 9999754 3677888887777655 566666554331111 11 1247999999999999999999876
Q ss_pred CcccCCCc-------ccccCccccccCCeEEEEeCCCcccCC
Q psy17315 121 AAAENFPF-------CTIDPNENNKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 121 ~~~~~~~~-------~T~~~~~~~~~~~~i~l~DtpG~~~~~ 155 (561)
..++..++ ||+.... ...+.+..|+||||+....
T Consensus 231 ~~t~~is~~~~rGrHTT~~~~l-~~l~~~~~liDTPGir~~~ 271 (347)
T PRK12288 231 ILVGDVSDNSGLGQHTTTAARL-YHFPHGGDLIDSPGVREFG 271 (347)
T ss_pred eeeccccCcCCCCcCceeeEEE-EEecCCCEEEECCCCCccc
Confidence 66666665 3433221 3344456799999997543
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-09 Score=96.22 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=96.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
||+++|.++||||||++++.+........|....+.... ......+.++|+||...... +. ...++++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----~~---~~~~~~~~ 73 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS----LR---DIFYRNSD 73 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH----HH---HHHHTTES
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc----cc---cccccccc
Confidence 689999999999999999998763222222111111111 11234699999999642221 11 12368899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
++++|+|.+. ...++.+..+...+...... ++||+|..+..... ..+...+....+ ...+
T Consensus 74 ~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~---~~~~~~~~~~~~-~~~~ 139 (162)
T PF00071_consen 74 AIIIVFDVTD----------EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS---VEEAQEFAKELG-VPYF 139 (162)
T ss_dssp EEEEEEETTB----------HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC---HHHHHHHHHHTT-SEEE
T ss_pred cccccccccc----------cccccccccccccccccccccccceeeeccccccccccch---hhHHHHHHHHhC-CEEE
Confidence 9999997653 33455566555555555442 89999998743332 233344444444 6789
Q ss_pred EEEccCCCCHHHHHHHHHhh
Q psy17315 248 GIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~ 267 (561)
.+|++++.|+.+++..+.+.
T Consensus 140 e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 140 EVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp EEBTTTTTTHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=103.56 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=91.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|..|+||++|+..+....|.....+.+.........+......+.+|||+|- +.+..+...+.++..-++..+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ-EEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCc-hhhhhhhhhhccCCCEEEEEE
Confidence 5799999999999999999998876544333321111100011112245889999994 556667666655544433333
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
++.+.+.+..+.. |... +... ....|+++|+||.|......
T Consensus 83 ----------------dit~~~Sf~~~~~~w~~~------------------i~~~--~~~~piilvgNK~DL~~~~~~~ 126 (191)
T cd01875 83 ----------------SIASPSSYENVRHKWHPE------------------VCHH--CPNVPILLVGTKKDLRNDADTL 126 (191)
T ss_pred ----------------ECCCHHHHHHHHHHHHHH------------------HHhh--CCCCCEEEEEeChhhhcChhhH
Confidence 3444455554432 3221 1111 14689999999996421100
Q ss_pred --------ccchHHHHHHHHHhcCCC-CeEEeechhhhhhhCCCCHHHH
Q psy17315 402 --------KNKWLPKIKEWVDANDPG-ATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 --------~~~~~~~l~~~~~~~~~~-~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....++.++++... + .+++.+||++|.|+.++.+...
T Consensus 127 ~~~~~~~~~~v~~~~~~~~a~~~--~~~~~~e~SAk~g~~v~e~f~~l~ 173 (191)
T cd01875 127 KKLKEQGQAPITPQQGGALAKQI--HAVKYLECSALNQDGVKEVFAEAV 173 (191)
T ss_pred HHHhhccCCCCCHHHHHHHHHHc--CCcEEEEeCCCCCCCHHHHHHHHH
Confidence 001122333444433 3 5799999999999888755443
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.2e-11 Score=128.28 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=94.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+++.|.||+||++|+|++++.....++++.+ |++..++ +...+.++.++|+||++..-.. ..++.+..+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGv--TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~------S~DE~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGV--TVEKKEGKLKYKGHEIEIVDLPGTYSLTAY------SEDEKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCe--eEEEEEEEEEecCceEEEEeCCCcCCCCCC------CchHHHHHH
Confidence 459999999999999999999998888888653 3455544 4556678999999998541000 000111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
++. -.+.|++..|+|+.. + +..+...-++. ..++|+++++|++|......-.
T Consensus 76 ~ll---------------~~~~D~ivnVvDAtn-----------L-eRnLyltlQLl-E~g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 76 FLL---------------EGKPDLIVNVVDATN-----------L-ERNLYLTLQLL-ELGIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred HHh---------------cCCCCEEEEEcccch-----------H-HHHHHHHHHHH-HcCCCeEEEeccHhhHHhcCCc
Confidence 100 011144444433211 1 11111111121 2589999999999654432223
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
-..+++++.+ +.|++++||++|.|++++.++..
T Consensus 128 ID~~~L~~~L-----GvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 128 IDIEKLSKLL-----GVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred ccHHHHHHHh-----CCCEEEEEeecCCCHHHHHHHHH
Confidence 3456666654 89999999999999988866543
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.7e-10 Score=98.19 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=96.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...+.+.++|+-|+|||||+|.+.... -.+.+..|...... ......+.++|.||...... .+-...|.
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~--tkgnvtiklwD~gGq~rfrs-------mWerycR~ 88 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV--TKGNVTIKLWDLGGQPRFRS-------MWERYCRG 88 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe--ccCceEEEEEecCCCccHHH-------HHHHHhhc
Confidence 345789999999999999999987644 23344333322111 12344799999999854442 34455799
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----------hhccccccCcCCCCCccHHHHHHH---h
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----------VDAKADSKKKMGPKKTDEGEKKML---L 238 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------v~NK~D~~~~~~~~~~~~~~l~~l---~ 238 (561)
+++|+++||+.+++ ++....++|..+... ++||.|++.+.+.. +...++ .
T Consensus 89 v~aivY~VDaad~~-------------k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~----~li~rmgL~s 151 (186)
T KOG0075|consen 89 VSAIVYVVDAADPD-------------KLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI----ALIERMGLSS 151 (186)
T ss_pred CcEEEEEeecCCcc-------------cchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH----HHHHHhCccc
Confidence 99999999987533 222333344333222 79999998654421 111111 1
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
-..++-...++|++...+++-+..||.+.
T Consensus 152 itdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 152 ITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred cccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 12345567999999999999999999886
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=99.43 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=84.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
++.+.|.+|+|||+|++.+.+..+..... ++.+..-....+.. ....+.+|||+|.++ +..+.....+....++..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLA-ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER-FRTLTSSYYRGAQGVILV 79 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccC-CcccceEEEEEEEECCEEEEEEEEECCCchh-hhhhhHHHhCCCCEEEEE
Confidence 68999999999999999999876543322 22222101111212 224688999999543 333333332222211111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+.+..+..++.. +..+......|+++|+||+|.. . ..
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~~iv~nK~D~~--~-~~ 122 (161)
T cd01863 80 Y----------------DVTRRDTFTNLETWLNE------------------LETYSTNNDIVKMLVGNKIDKE--N-RE 122 (161)
T ss_pred E----------------ECCCHHHHHhHHHHHHH------------------HHHhCCCCCCcEEEEEECCccc--c-cc
Confidence 1 11222222222222211 2222222478999999999543 2 22
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...++..++.... +.+++++||++|.|+.++.++.
T Consensus 123 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 123 VTREEGLKFARKH--NMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred cCHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHH
Confidence 2334455555543 6789999999999988875543
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=99.14 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=83.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+|||+|++.+.+..+.....+. .+.|... .+...+ ..+.+|||||..+ +..+.....+...-++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQAT--IGIDFLSKTMYLEDKTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVV 78 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCc--eeeeEEEEEEEECCEEEEEEEEECCCcHH-HHHHHHHHhccCCEEEE
Confidence 6899999999999999999988655432222 1122221 122222 3578999999544 43333333322221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ....
T Consensus 79 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~~iilv~nK~D~--~~~~ 121 (161)
T cd01861 79 VY----------------DITNRQSFDNTDKWIDD------------------VRDERG-NDVIIVLVGNKTDL--SDKR 121 (161)
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCEEEEEEEChhc--cccC
Confidence 11 11222222222222221 111111 25899999999965 2222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+......... +.+++++||+++.|++++.+..
T Consensus 122 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 122 QVSTEEGEKKAKEL--NAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred ccCHHHHHHHHHHh--CCEEEEEeCCCCCCHHHHHHHH
Confidence 33344444444443 5789999999999988875543
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=105.92 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=97.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|..|+||++|++.+.+..|.....+.+.........+......+.+|||+| ++.+..+...+.++...++..+
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG-~e~~~~~~~~~~~~ad~vIlVy 92 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSG-SPYYDNVRPLCYSDSDAVLLCF 92 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCC-chhhHHHHHHHcCCCcEEEEEE
Confidence 579999999999999999999887765544333211100001111224688999999 4556666666655554443333
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh----
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI---- 399 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~---- 399 (561)
++++.+.+..+ ..|..+ +.... ...|+|+|+||+|....
T Consensus 93 ----------------Dit~~~Sf~~~~~~w~~~------------------i~~~~--~~~piilVgNK~DL~~~~~~~ 136 (232)
T cd04174 93 ----------------DISRPETVDSALKKWKAE------------------IMDYC--PSTRILLIGCKTDLRTDLSTL 136 (232)
T ss_pred ----------------ECCChHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECcccccccchh
Confidence 33444555443 233322 11111 36799999999964210
Q ss_pred ------hhccchHHHHHHHHHhcCCCC-eEEeechhhhh-hhCCCCHHHHHHHHH
Q psy17315 400 ------KKKNKWLPKIKEWVDANDPGA-TIIPFSGVFEH-QLVDMPDDERQRYLD 446 (561)
Q Consensus 400 ------~~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~-gl~~L~~~~~~~~~~ 446 (561)
.......++.+++++.. +. +++.+||++|. |+.++.......+++
T Consensus 137 ~~l~~~~~~~Vs~~e~~~~a~~~--~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 137 MELSNQKQAPISYEQGCALAKQL--GAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred hhhccccCCcCCHHHHHHHHHHc--CCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 00122344566666655 55 58999999997 798887666555444
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=102.29 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=93.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|..|+||++|++.+....|.....+.+.........+......+.+|||+|- +.+..+...+.++...++..+
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~-e~~~~~~~~~~~~ad~~ilvy 84 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS-PYYDNVRPLSYPDSDAVLICF 84 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCc-hhhHhhhhhhcCCCCEEEEEE
Confidence 5799999999999999999999877554433321111000011112246889999994 446666665554444333333
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh----
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI---- 399 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~---- 399 (561)
++.+.+.+..+ ..|... +.... ...|+++|+||+|....
T Consensus 85 ----------------Dit~~~Sf~~~~~~w~~~------------------i~~~~--~~~piilVgNK~DL~~~~~~~ 128 (182)
T cd04172 85 ----------------DISRPETLDSVLKKWKGE------------------IQEFC--PNTKMLLVGCKSDLRTDLTTL 128 (182)
T ss_pred ----------------ECCCHHHHHHHHHHHHHH------------------HHHHC--CCCCEEEEeEChhhhcChhhH
Confidence 34444555554 233322 22221 36899999999964210
Q ss_pred ------hhccchHHHHHHHHHhcCCC-CeEEeechhhhhh-hCCCCHH
Q psy17315 400 ------KKKNKWLPKIKEWVDANDPG-ATIIPFSGVFEHQ-LVDMPDD 439 (561)
Q Consensus 400 ------~~~~~~~~~l~~~~~~~~~~-~~vi~iSA~~~~g-l~~L~~~ 439 (561)
.......++..++++.. + .+++.+||+++.| +.++...
T Consensus 129 ~~~~~~~~~~v~~~~~~~~a~~~--~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 129 VELSNHRQTPVSYDQGANMAKQI--GAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHc--CCCEEEECCcCCCCCCHHHHHHH
Confidence 00112344556666654 5 4899999999998 8887544
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=101.73 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=88.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+|||+|++.+.+..+.....+++..+.. ...+... ...+.+|||+|.++ ...+.....+....++..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFK-IKTVYIENKIIKLQIWDTNGQER-FRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE-EEEEEECCEEEEEEEEECCCcHH-HHhhHHHHccCCCEEEEE
Confidence 6899999999999999999988664433332211111 1122222 23567899999543 444444433333222221
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.. +..+.. ...|+++|+||+|. .+...
T Consensus 80 ~----------------d~~~~~s~~~i~~~~~~------------------i~~~~~-~~~~~ivv~nK~Dl--~~~~~ 122 (188)
T cd04125 80 Y----------------DVTDQESFENLKFWINE------------------INRYAR-ENVIKVIVANKSDL--VNNKV 122 (188)
T ss_pred E----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECCCC--ccccc
Confidence 1 22333444444444332 111111 35799999999954 32122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
...+...++.... +.+++.+||+++.|+.++.+...+..
T Consensus 123 v~~~~~~~~~~~~--~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 123 VDSNIAKSFCDSL--NIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred CCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2223333444433 56899999999999988866554443
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.9e-10 Score=104.01 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=93.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|.+|+|||+|+..+....|.....+++.........+......+.+|||+|. +.+..+...+.++....+..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~-~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCC-ccccccchhhcCCCcEEEEEE
Confidence 3689999999999999999999887655444432221110111112246789999995 445555555544444333333
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
++++.+.+..+ ..|+.+ +.... ...|+++|+||+|......
T Consensus 81 ----------------d~~~~~Sf~~~~~~w~~~------------------i~~~~--~~~piilvgnK~Dl~~~~~~~ 124 (176)
T cd04133 81 ----------------SLISRASYENVLKKWVPE------------------LRHYA--PNVPIVLVGTKLDLRDDKQYL 124 (176)
T ss_pred ----------------EcCCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEeChhhccChhhh
Confidence 33444555544 234332 22121 3689999999996421100
Q ss_pred ------ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHH
Q psy17315 402 ------KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ------~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....++..+++... +. +++.+||++|.|++++.+...+
T Consensus 125 ~~~~~~~~v~~~~~~~~a~~~--~~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 125 ADHPGASPITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred hhccCCCCCCHHHHHHHHHHc--CCCEEEECCCCcccCHHHHHHHHHH
Confidence 012344455555544 44 6899999999999887555443
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-09 Score=113.92 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=93.7
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCCC-------c---------ccCCCcccccCccccc--cCCeEEEEeCCCccc
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSSA-------A---------AENFPFCTIDPNENNK--VPAFLNVVDIAGLVK 153 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~~-------~---------~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~ 153 (561)
.....++|+++|.+++|||||+++|++... . .....|+|.+...... .+.++.++||||...
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 345568899999999999999999986310 0 1114677776543222 245789999999742
Q ss_pred CCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCc
Q psy17315 154 GAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKT 229 (561)
Q Consensus 154 ~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~ 229 (561)
+.......+..+|++++|+|+...- .....+ +...+.....+ +.||+|+.+....-..
T Consensus 88 -------f~~~~~~~~~~aD~~llVVDa~~g~-------~~qt~~----~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~ 149 (396)
T PRK00049 88 -------YVKNMITGAAQMDGAILVVSAADGP-------MPQTRE----HILLARQVGVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred -------HHHHHHhhhccCCEEEEEEECCCCC-------chHHHH----HHHHHHHcCCCEEEEEEeecCCcchHHHHHH
Confidence 2223345568899999999875210 000111 11223333333 4799999742111011
Q ss_pred cHHHHHHHhhhc----CCCcEEEEEccCCC----------CHHHHHHHHHhh
Q psy17315 230 DEGEKKMLLGRV----GTNLKVGIVGVPNV----------GKSTFFNVLTKR 267 (561)
Q Consensus 230 ~~~~l~~l~~~~----~~~~~i~isg~~~~----------Gks~l~~~l~~~ 267 (561)
....+..++... ...+.+++||.+|. |..+|+++|.+.
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 112233343332 23567999999875 567888888764
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-09 Score=105.45 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=37.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
...|.+.|.+|+|||+|+|.+++..+..+.. +|++.....+.. ..+.+|||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~---~~~t~~~~~~~~--~~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKR---PGVTRKPNHYDW--GDFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCC---CceeeCceEEee--cceEEEeCCcc
Confidence 4689999999999999999999876543332 344311112222 26889999995
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-09 Score=105.29 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=90.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+||++|++.+....|.. ..+.+.+.. ....+....+.+|||+|.+ .+..+...+.+....++..+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~---~~~~~~~~~l~iwDt~G~e-~~~~l~~~~~~~ad~~IlV~- 75 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAF---YLKQWGPYNISIWDTAGRE-QFHGLGSMYCRGAAAVILTY- 75 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEE---EEEEeeEEEEEEEeCCCcc-cchhhHHHHhccCCEEEEEE-
Confidence 58899999999999999999887643 222222211 0011123457899999954 45555555544333322222
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh-----
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK----- 400 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~----- 400 (561)
++.+.+.+..+..++.. +.... ....|+|+|+||+|.....
T Consensus 76 ---------------Dvt~~~Sf~~l~~~~~~------------------l~~~~-~~~~piIlVgNK~DL~~~~~~~~~ 121 (220)
T cd04126 76 ---------------DVSNVQSLEELEDRFLG------------------LTDTA-NEDCLFAVVGNKLDLTEEGALAGQ 121 (220)
T ss_pred ---------------ECCCHHHHHHHHHHHHH------------------HHHhc-CCCCcEEEEEECcccccccccccc
Confidence 22333444433332221 11111 1357999999999642100
Q ss_pred ------------hccchHHHHHHHHHhcCC------------CCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 ------------KKNKWLPKIKEWVDANDP------------GATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ------------~~~~~~~~l~~~~~~~~~------------~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......++..+++++... ..+++.+||++|.|+.++.....+..+
T Consensus 122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 112223455555554310 157899999999999998776655443
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-09 Score=98.80 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=86.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+|||+|++.+.+..+.....+.+ +. +.. ..+...+ ..+.+||+||... +..+...+.+....++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GA-DFLTKEVTVDDKLVTLQIWDTAGQER-FQSLGVAFYRGADCCVL 78 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCcc-ce-EEEEEEEEECCEEEEEEEEeCCChHH-HHhHHHHHhcCCCEEEE
Confidence 68999999999999999999876543322221 21 111 1222222 3567999999543 44444444333322211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh--hccCCceEEEecCChhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN--LLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~--~l~~kP~iiv~NK~D~d~~~ 400 (561)
-+ ++.+...+..+..|... .+.... ....+|+++|+||+|. ..
T Consensus 79 v~----------------d~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~p~ilv~nK~Dl--~~ 123 (172)
T cd01862 79 VY----------------DVTNPKSFESLDSWRDE-----------------FLIQASPSDPENFPFVVLGNKIDL--EE 123 (172)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH-----------------HHHhcCccCCCCceEEEEEECccc--cc
Confidence 11 11112222222222111 111110 0136899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......+.++.+++.. ...+++++||++|.|+.++.+......
T Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 124 KRQVSTKKAQQWCQSN-GNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred ccccCHHHHHHHHHHc-CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 1222345555555544 236899999999999988865554443
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-09 Score=101.25 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=82.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.+.|.+|+|||+|++.+.+..+ ..+.++.|.. ...+...+..+.+|||||.+. +..+...+.+....++..
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~~t~g~~--~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDI--DTISPTLGFQ--IKTLEYEGYKLNIWDVGGQKT-LRPYWRNYFESTDALIWV 88 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC--CCcCCccccc--eEEEEECCEEEEEEECCCCHH-HHHHHHHHhCCCCEEEEE
Confidence 46799999999999999999998743 2232222321 111222345688999999643 444444443333222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+.+..+..++.. ++. .......|+++|+||+|. .. .
T Consensus 89 ~----------------d~~~~~s~~~~~~~~~~-----------------~~~-~~~~~~~p~iiv~nK~Dl--~~--~ 130 (173)
T cd04154 89 V----------------DSSDRLRLDDCKRELKE-----------------LLQ-EERLAGATLLILANKQDL--PG--A 130 (173)
T ss_pred E----------------ECCCHHHHHHHHHHHHH-----------------HHh-ChhhcCCCEEEEEECccc--cc--C
Confidence 1 11111222222222211 111 111247899999999954 22 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
...+++.+++... ....+++++||++|.|++++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 131 LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 1234454444221 1246899999999999887743
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=106.93 Aligned_cols=162 Identities=12% Similarity=0.123 Sum_probs=89.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|..|+||++|++.+.+..|.....+.+ + |... .+...+ ..+.+|||+|.+ .+..+...+.....-++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi-~--d~~~k~~~i~~~~~~l~I~Dt~G~~-~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-E--DFHRKLYSIRGEVYQLDILDTSGNH-PFPAMRRLSILTGDVFIL 77 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh-h--HhEEEEEEECCEEEEEEEEECCCCh-hhhHHHHHHhccCCEEEE
Confidence 58899999999999999998876654322221 1 1111 122222 457899999954 344444433322222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHH--HhhhhccCCceEEEecCChhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHL--NKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l--~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
.+ ++.+.+.+..+..++.+ .. +.... ........+|+|+|+||+|.. .
T Consensus 78 Vf----------------dv~~~~Sf~~i~~~~~~--I~----------~~k~~~~~~~~~~~~~piIivgNK~Dl~--~ 127 (247)
T cd04143 78 VF----------------SLDNRESFEEVCRLREQ--IL----------ETKSCLKNKTKENVKIPMVICGNKADRD--F 127 (247)
T ss_pred EE----------------eCCCHHHHHHHHHHHHH--HH----------HhhcccccccccCCCCcEEEEEECccch--h
Confidence 11 23334555544444332 00 00000 000011368999999999643 2
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+++.+++... ...+++++||+++.|++++.+....
T Consensus 128 ~~~v~~~ei~~~~~~~-~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 128 PREVQRDEVEQLVGGD-ENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred ccccCHHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 1233445566655432 1467999999999999988666544
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-10 Score=104.53 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=38.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHI 302 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi 302 (561)
++|.+.|.+|+|||+|++++.+..+..+.+ ++++ ++.. .+...+..+.+|||||+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~ 57 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPY---PFTTKSLFVGHFDYKYLRWQVIDTPGL 57 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCC---CCcccceeEEEEccCceEEEEEECCCc
Confidence 468999999999999999999986543333 3332 2222 22333457899999996
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-09 Score=102.13 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=85.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+||++|++.+....|.....+.+..... ..+...+ ..+.+|||+|.+ .+..+...+.+....++.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~--~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA--VTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE--EEEEECCEEEEEEEEECCCcc-chhhhhhhhcccCCEEEE
Confidence 46899999999999999999988765443332211110 1122222 457899999954 355555444433332222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
.+ ++.+.+.+..+.. |+.. +.... ...|+++|+||+|......
T Consensus 79 v~----------------d~~~~~s~~~~~~~w~~~------------------i~~~~--~~~piilvgnK~Dl~~~~~ 122 (175)
T cd01874 79 CF----------------SVVSPSSFENVKEKWVPE------------------ITHHC--PKTPFLLVGTQIDLRDDPS 122 (175)
T ss_pred EE----------------ECCCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECHhhhhChh
Confidence 22 2233334433322 2211 11111 3689999999996421100
Q ss_pred ----------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 ----------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ----------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....++..++++.. ....++++||++|.|+.++.+..
T Consensus 123 ~~~~l~~~~~~~v~~~~~~~~a~~~-~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 123 TIEKLAKNKQKPITPETGEKLARDL-KAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hHHHhhhccCCCcCHHHHHHHHHHh-CCcEEEEecCCCCCCHHHHHHHH
Confidence 001122233343332 13579999999999998885544
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-09 Score=107.25 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=60.6
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc---cccccccc
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE---GQGLGNAF 165 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~---~~~~~~~~ 165 (561)
....+++|+++|.+|||||||+|+|.|.. ..++.++++|...+... ..+..+.+|||||+...... ........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 44567899999999999999999999988 67777877777655432 23457999999999755321 11111111
Q ss_pred cccc--ccCCEEEEEec
Q psy17315 166 LSHI--SACDAIFHLCK 180 (561)
Q Consensus 166 l~~i--~~~D~il~VvD 180 (561)
...+ ...|++++|..
T Consensus 107 ~~~l~~~~idvIL~V~r 123 (249)
T cd01853 107 KRYLKKKTPDVVLYVDR 123 (249)
T ss_pred HHHHhccCCCEEEEEEc
Confidence 1122 25688888863
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-09 Score=104.58 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=84.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCC-cc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhh-CCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEG-EV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR-GDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~g-t~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~-~~~~~~~ 322 (561)
+|.+.|.+|+||++|++.+....+....+.++.+ .. .....+......+.+|||+|.+. .+...... ....++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~---~~~~~~~~~~ad~iil 78 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM---WTEDSCMQYQGDAFVV 78 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch---HHHhHHhhcCCCEEEE
Confidence 6899999999999999999876554233333222 11 01011222335688999999752 12222221 1211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +........+|+|+|+||+|. ....
T Consensus 79 V~----------------d~td~~S~~~~~~~~~~------------------l~~~~~~~~~piilV~NK~Dl--~~~~ 122 (221)
T cd04148 79 VY----------------SVTDRSSFERASELRIQ------------------LRRNRQLEDRPIILVGNKSDL--ARSR 122 (221)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEEChhc--cccc
Confidence 11 12222333333222221 222211246899999999954 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+...++.... +.+++++||+++.|++++.+.....
T Consensus 123 ~v~~~~~~~~a~~~--~~~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 123 EVSVQEGRACAVVF--DCKFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred eecHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 22233333444433 5678999999999998886655443
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-10 Score=112.68 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=98.4
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHH----HHHH
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKE----INKI 309 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~----~~~l 309 (561)
+.++-......+.+.++|.||+|||||++.++...++.+.|||++-.+ .+-.++....+++++||||+-.+ .+.+
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i-~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGI-HVGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccce-eEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 344444556788999999999999999999999999999999965332 11123444568999999998321 2223
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
+++.. .+ +. |+. ++++++.|..+. .. -..+++..++++...+-.+|+++
T Consensus 237 E~qAi-------~A-L~--------------hl~--~~IlF~~D~Se~------cg-y~lE~Q~~L~~eIk~~f~~p~v~ 285 (346)
T COG1084 237 ERQAI-------LA-LR--------------HLA--GVILFLFDPSET------CG-YSLEEQISLLEEIKELFKAPIVV 285 (346)
T ss_pred HHHHH-------HH-HH--------------Hhc--CeEEEEEcCccc------cC-CCHHHHHHHHHHHHHhcCCCeEE
Confidence 32221 00 00 000 222222221111 11 12244566666666555689999
Q ss_pred EecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 390 LVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 390 v~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
|+||+|. .+ .+.++++...+.... ....+.+|+..+.+++.+.++
T Consensus 286 V~nK~D~--~~--~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~ 330 (346)
T COG1084 286 VINKIDI--AD--EEKLEEIEASVLEEG-GEEPLKISATKGCGLDKLREE 330 (346)
T ss_pred EEecccc--cc--hhHHHHHHHHHHhhc-cccccceeeeehhhHHHHHHH
Confidence 9999953 31 233444443333221 233566788888887666443
|
|
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-09 Score=100.76 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=86.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
++.+.|..|+||++|++.+....|.....+.+ |. ... ..+...+ ..+.+|||+|-+ .+..+...+.+...-++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~-g~~~~~-~~i~~~~~~~~l~iwDt~G~~-~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTL-GVNFME-KTISIRGTEITFSIWDLGGQR-EFINMLPLVCNDAVAILF 78 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc-ceEEEE-EEEEECCEEEEEEEEeCCCch-hHHHhhHHHCcCCCEEEE
Confidence 68899999999999999998887654433322 21 100 1122222 457899999954 344444444433322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh--h-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY--I- 399 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~--~- 399 (561)
.+ ++.+.+.+..+..|+.. +..... ...| ++|+||+|... .
T Consensus 79 v~----------------D~t~~~s~~~i~~~~~~------------------~~~~~~-~~~p-ilVgnK~Dl~~~~~~ 122 (182)
T cd04128 79 MF----------------DLTRKSTLNSIKEWYRQ------------------ARGFNK-TAIP-ILVGTKYDLFADLPP 122 (182)
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCE-EEEEEchhccccccc
Confidence 22 23333444444444332 111111 2355 67899995410 0
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.......+...++++.. +.+++++||++|.|++++.+...+
T Consensus 123 ~~~~~~~~~~~~~a~~~--~~~~~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 123 EEQEEITKQARKYAKAM--KAPLIFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred hhhhhhHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 01112234444555544 578999999999999888655443
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=99.66 Aligned_cols=157 Identities=12% Similarity=0.103 Sum_probs=104.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-ch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|..++||++|++.+.-..|.....+++. +|-.. .+ +-....|++|||+| ++++..+...|++...-++
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIG--iDFlskt~~l~d~~vrLQlWDTAG-QERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIG--IDFLSKTMYLEDRTVRLQLWDTAG-QERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceee--eEEEEEEEEEcCcEEEEEEEeccc-HHHHhhhhhhhccCCeEEE
Confidence 5799999999999999999999877665544322 11111 12 22234689999999 6778888888887765555
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++++...+++...|+++. .. ...-.+.-+++|.||. |+.+.
T Consensus 100 iVy----------------Dit~~~Sfe~t~kWi~dv-----------------~~-e~gs~~viI~LVGnKt--DL~dk 143 (221)
T KOG0094|consen 100 IVY----------------DITDRNSFENTSKWIEDV-----------------RR-ERGSDDVIIFLVGNKT--DLSDK 143 (221)
T ss_pred EEE----------------eccccchHHHHHHHHHHH-----------------Hh-ccCCCceEEEEEcccc--cccch
Confidence 544 567778888888888761 11 1110235567899999 55543
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....++=...+++. +..++.+||+.|.|+.+|...+..
T Consensus 144 rqvs~eEg~~kAkel--~a~f~etsak~g~NVk~lFrrIaa 182 (221)
T KOG0094|consen 144 RQVSIEEGERKAKEL--NAEFIETSAKAGENVKQLFRRIAA 182 (221)
T ss_pred hhhhHHHHHHHHHHh--CcEEEEecccCCCCHHHHHHHHHH
Confidence 333333333334444 678999999999999877555443
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-09 Score=102.26 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=90.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.+|.+.|.+|+||++|++.+.+..+.....+.+ | .|.. ..+... ...+.+|||+|.+ .+..+...+.+....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti-~-~d~~~~~i~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~d~i 79 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV-G-VDFFSRLIEIEPGVRIKLQLWDTAGQE-RFRSITRSYYRNSVGV 79 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee-c-eEEEEEEEEECCCCEEEEEEEeCCcch-hHHHHHHHHhcCCcEE
Confidence 579999999999999999999876543322221 1 1111 112111 2357899999954 4555555554333322
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..|+.. +.........|+++|+||+|. ..
T Consensus 80 ilv~----------------D~~~~~Sf~~l~~~~~~------------------i~~~~~~~~~~iilvgNK~Dl--~~ 123 (211)
T cd04111 80 LLVF----------------DITNRESFEHVHDWLEE------------------ARSHIQPHRPVFILVGHKCDL--ES 123 (211)
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCeEEEEEEcccc--cc
Confidence 2222 23334444444444332 111111134678999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+...++.+.. +.+++.+||++|.|+.++.+...+
T Consensus 124 ~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 124 QRQVTREEAEKLAKDL--GMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred ccccCHHHHHHHHHHh--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2222334445555544 578999999999999888665544
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=109.75 Aligned_cols=131 Identities=16% Similarity=0.096 Sum_probs=80.1
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhh-hcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQIL-ISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~-~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
+.+|.|.|++.| ..+. ..++++...+ ..++|.+ +||+++.....|..++.+.+..+ +++..+.+.
T Consensus 80 D~vllV~d~~~p------~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 80 DQLVIVVSLNEP------FFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred CEEEEEEEcCCC------CCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 557999999999 4111 1334321111 1344544 99998766667777666656554 566665543
Q ss_pred CCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCC-------CcccccCccccccCCeEEEEeCCC
Q psy17315 79 KKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENF-------PFCTIDPNENNKVPAFLNVVDIAG 150 (561)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~-------~~~T~~~~~~~~~~~~i~l~DtpG 150 (561)
..... .. .+..++++|.+|||||||+|+|.+.. ..++.. +++|+.... ...+....++||||
T Consensus 153 ~~L~~--------~L-~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~-~~~~~~~~liDtPG 222 (287)
T cd01854 153 DELRE--------YL-KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL-FPLPGGGLLIDTPG 222 (287)
T ss_pred HHHHh--------hh-ccceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE-EEcCCCCEEEECCC
Confidence 22111 11 12579999999999999999999865 333322 235555432 23333568999999
Q ss_pred cccC
Q psy17315 151 LVKG 154 (561)
Q Consensus 151 ~~~~ 154 (561)
+.+.
T Consensus 223 ~~~~ 226 (287)
T cd01854 223 FREF 226 (287)
T ss_pred CCcc
Confidence 9653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-09 Score=101.62 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=81.5
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
|.+.|.+|+|||+|++.+.+..+.....+.+..... ..+... ..++.+|||+|.++ +..+.....+...-++..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS--ADVEVDGKPVELGLWDTAGQED-YDRLRPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee--EEEEECCEEEEEEEEECCCCcc-cchhchhhcCCCCEEEEEE
Confidence 478999999999999999998664433222111110 111111 23588999999543 3333333322222211111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
++++.+.+..+.. |+.. +.... ..+|+++|+||+|......
T Consensus 78 ----------------d~~~~~s~~~~~~~~~~~------------------i~~~~--~~~piilv~nK~Dl~~~~~~~ 121 (174)
T smart00174 78 ----------------SVDSPASFENVKEKWYPE------------------VKHFC--PNTPIILVGTKLDLREDKSTL 121 (174)
T ss_pred ----------------ECCCHHHHHHHHHHHHHH------------------HHhhC--CCCCEEEEecChhhhhChhhh
Confidence 1222233332221 1111 11111 4799999999996532100
Q ss_pred --------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 --------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 --------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....++..++++.. ...+++++||+++.|+.++.+...
T Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l~ 168 (174)
T smart00174 122 RELSKQKQEPVTYEQGEALAKRI-GAVKYLECSALTQEGVREVFEEAI 168 (174)
T ss_pred hhhhcccCCCccHHHHHHHHHHc-CCcEEEEecCCCCCCHHHHHHHHH
Confidence 001122333444443 124789999999999988865543
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=98.17 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=87.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
++.+.|.+|+||++|++.+....+.....+.+ |. +.. ..+... ...+.+|||+|.+ +...+...+.+....++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTI-GV-DFKMKTIEVDGIKVRIQIWDTAGQE-RYQTITKQYYRRAQGIFL 78 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCce-ee-EEEEEEEEECCEEEEEEEEeCCCcH-hHHhhHHHHhcCCcEEEE
Confidence 58899999999999999998876643332221 21 111 112222 2357899999954 355444444333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..|+.+ +.... ....|+++|.||.|. ....
T Consensus 79 v~----------------d~~~~~sf~~~~~~~~~------------------~~~~~-~~~~~iilvgnK~Dl--~~~~ 121 (161)
T cd04117 79 VY----------------DISSERSYQHIMKWVSD------------------VDEYA-PEGVQKILIGNKADE--EQKR 121 (161)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhC-CCCCeEEEEEECccc--cccc
Confidence 22 23334555555444432 11111 136899999999954 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....++...+.+.. +.+++++||+++.|+.++.+..
T Consensus 122 ~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 122 QVGDEQGNKLAKEY--GMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred CCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 22223344444433 5788999999999988775443
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-09 Score=100.06 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=106.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..++.+.|.+|+||++|+|++....|....-..+.... -.+++.+.+ ..+++|||+| ++++..|.-..++++.-..
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadF-ltKev~Vd~~~vtlQiWDTAG-QERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADF-LTKEVQVDDRSVTLQIWDTAG-QERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhh-eeeEEEEcCeEEEEEEEeccc-HHHhhhcccceecCCceEE
Confidence 36799999999999999999999887665544332111 002222222 3588999999 6668777766666655443
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++...+....+-.|-.+ -+..-..... ..-|+|++.||+|.+.-.+
T Consensus 87 lvy----------------dv~~~~Sfe~L~~Wr~E--------------Fl~qa~~~~P-e~FPFVilGNKiD~~~~~~ 135 (210)
T KOG0394|consen 87 LVY----------------DVNNPKSFENLENWRKE--------------FLIQASPQDP-ETFPFVILGNKIDVDGGKS 135 (210)
T ss_pred EEe----------------ecCChhhhccHHHHHHH--------------HHHhcCCCCC-CcccEEEEcccccCCCCcc
Confidence 333 22333443333222221 1110000011 3579999999997654322
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
......+..+|+.... ++|.+.+|||...++.++.++.....++
T Consensus 136 r~VS~~~Aq~WC~s~g-nipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 136 RQVSEKKAQTWCKSKG-NIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred ceeeHHHHHHHHHhcC-CceeEEecccccccHHHHHHHHHHHHHh
Confidence 4445677788988764 7899999999999998887776655444
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-09 Score=99.95 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=86.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+|||+|++.+.+..+.....+.+.... ...+... ..++.+|||+|.+ .+..+...+.+...-++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~--~~~i~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~ad~ii~ 78 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENY--VTNIQGPNGKIIELALWDTAGQE-EYDRLRPLSYPDVDVLLI 78 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeee--EEEEEecCCcEEEEEEEECCCch-hHHHHHHHhCCCCCEEEE
Confidence 689999999999999999998876544332211111 1112111 2367899999954 344454444333322221
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
.+ ++.+.+.+..+.. |+.. +... ....|+++|+||+|......
T Consensus 79 v~----------------d~~~~~s~~~~~~~~~~~------------------~~~~--~~~~piilv~nK~Dl~~~~~ 122 (187)
T cd04132 79 CY----------------AVDNPTSLDNVEDKWFPE------------------VNHF--CPGTPIMLVGLKTDLRKDKN 122 (187)
T ss_pred EE----------------ECCCHHHHHHHHHHHHHH------------------HHHh--CCCCCEEEEEeChhhhhCcc
Confidence 11 1122222222211 1111 1111 13689999999995422110
Q ss_pred --ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 --KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 --~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....++..+++... +. +++.+||++|.|+.++.+.....++
T Consensus 123 ~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 123 LDRKVTPAQAESVAKKQ--GAFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred ccCCcCHHHHHHHHHHc--CCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 011233444554443 44 7899999999999998766555443
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-09 Score=102.94 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=89.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+||++|++.+.+..+.....+++ |. +.. ..+.. ....+.+|||+|. +++..+...+.+....+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~-g~-~~~~~~v~~~~~~~~l~l~Dt~G~-~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI-GV-EFATRTLQVEGKTVKAQIWDTAGQ-ERYRAITSAYYRGAVGA 88 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eE-EEEEEEEEECCEEEEEEEEECCCc-HHHHHHHHHHhCCCCEE
Confidence 3589999999999999999999876544333221 11 111 11211 2236889999995 44555555544433222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+...+..+..|+.. +..... ...|+++|+||+|....
T Consensus 89 ilv~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piiiv~nK~Dl~~~- 132 (216)
T PLN03110 89 LLVY----------------DITKRQTFDNVQRWLRE------------------LRDHAD-SNIVIMMAGNKSDLNHL- 132 (216)
T ss_pred EEEE----------------ECCChHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEEChhcccc-
Confidence 2211 22333344433333322 111111 36899999999964321
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+....+.... +.+++++||+++.|++++.+....
T Consensus 133 -~~~~~~~~~~l~~~~--~~~~~e~SA~~g~~v~~lf~~l~~ 171 (216)
T PLN03110 133 -RSVAEEDGQALAEKE--GLSFLETSALEATNVEKAFQTILL 171 (216)
T ss_pred -cCCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 122223333443332 678999999999999887555433
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-08 Score=95.72 Aligned_cols=150 Identities=18% Similarity=0.131 Sum_probs=84.7
Q ss_pred cEEEEEEcCCCCHHHHHH-HHhcCCC----cccCC-Cccc-ccCc------------cccccCCeEEEEeCCCcccCCcc
Q psy17315 97 LKVGIVGVPNVGKSTFFN-VLTKSSA----AAENF-PFCT-IDPN------------ENNKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin-~L~~~~~----~~~~~-~~~T-~~~~------------~~~~~~~~i~l~DtpG~~~~~~~ 157 (561)
+||+++|.+|||||||++ .+.+... -...+ |.+. .+.. ........+.+|||||....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 689999999999999996 5554321 01111 2110 0100 00011346899999998531
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCC------
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMG------ 225 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~------ 225 (561)
+. ...++++|++++|+|.+.++ .++.+. .+.+.+..... + |+||+|+.+...
T Consensus 80 ---~~---~~~~~~ad~iilv~d~t~~~----------Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~ 143 (195)
T cd01873 80 ---DR---RFAYGRSDVVLLCFSIASPN----------SLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRA 143 (195)
T ss_pred ---hh---cccCCCCCEEEEEEECCChh----------HHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhc
Confidence 11 12468999999999876322 223332 22223332211 1 899999864210
Q ss_pred ----------CCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 226 ----------PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 226 ----------~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
...-...+...+.....- ..+.+|+++|.|+..+|..+.+
T Consensus 144 ~~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 144 RRPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHH
Confidence 011112222333333232 5789999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-09 Score=99.04 Aligned_cols=161 Identities=12% Similarity=0.133 Sum_probs=84.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh---hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI---INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~---~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..++.+.|.+|+||++|++.+....+.. ..++ .|.......+.. .+..+.+|||+|.+ .+..+...+.+....+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t-~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPT-KGFNTEKIKVSLGNSKGITFHFWDVGGQE-KLRPLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCc-cccceeEEEeeccCCCceEEEEEECCCcH-hHHHHHHHHhccCCEE
Confidence 4679999999999999999998775432 2222 221100111211 23468899999954 3444444443333222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+.+.+..+..+ ...+........+|+++|+||+|.. .
T Consensus 80 i~v~----------------D~~~~~~~~~~~~~------------------~~~i~~~~~~~~~p~iiv~NK~D~~--~ 123 (183)
T cd04152 80 VFVV----------------DSVDVERMEEAKTE------------------LHKITRFSENQGVPVLVLANKQDLP--N 123 (183)
T ss_pred EEEE----------------ECCCHHHHHHHHHH------------------HHHHHhhhhcCCCcEEEEEECcCcc--c
Confidence 1111 01111111111111 1112112122478999999999642 1
Q ss_pred hccchHHHHHHHHH--hcC--CCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVD--AND--PGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~--~~~--~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
....+.+...+. ... ...+++++||+++.|++++.+.......
T Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 124 --ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred --cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 111222333222 110 1246899999999999998776655443
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-09 Score=120.81 Aligned_cols=155 Identities=14% Similarity=0.017 Sum_probs=88.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-Ccc----------cCCCccccc----------------------Cccc--cc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAA----------ENFPFCTID----------------------PNEN--NK 138 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~----------~~~~~~T~~----------------------~~~~--~~ 138 (561)
+..++|+++|.+|+|||||+|+|+... ..+ +..+|+|++ .... ..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 345789999999999999999998654 211 123455433 2111 12
Q ss_pred cCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---h
Q psy17315 139 VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---V 214 (561)
Q Consensus 139 ~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v 214 (561)
.+.++.|+||||.... .......+..+|++++|+|+...- .....+.+. .+..+. .+ +
T Consensus 102 ~~~~~~liDtPG~~~f-------~~~~~~~~~~aD~~llVvda~~g~-------~~~t~e~~~----~~~~~~~~~iivv 163 (632)
T PRK05506 102 PKRKFIVADTPGHEQY-------TRNMVTGASTADLAIILVDARKGV-------LTQTRRHSF----IASLLGIRHVVLA 163 (632)
T ss_pred CCceEEEEECCChHHH-------HHHHHHHHHhCCEEEEEEECCCCc-------cccCHHHHH----HHHHhCCCeEEEE
Confidence 3347899999996421 112334578899999999875210 000001111 122222 22 7
Q ss_pred hccccccCcCCCC-CccHHHHHHHhhhc--CCCcEEEEEccCCCCHH------------HHHHHHHh
Q psy17315 215 DAKADSKKKMGPK-KTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKS------------TFFNVLTK 266 (561)
Q Consensus 215 ~NK~D~~~~~~~~-~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks------------~l~~~l~~ 266 (561)
+||+|+.+..... ......+..+.... ...+.+++||++|.|+. +|++.|..
T Consensus 164 vNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~ 230 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET 230 (632)
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc
Confidence 9999997421100 00111222222222 23468999999999986 57766654
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.1e-10 Score=105.22 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=82.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH---------HHHHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE---------KEINKIEKLV 313 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~---------~~~~~l~~~~ 313 (561)
..+++.+.|.+|+|||+|++.+++..+ ...++..+|++..+.-+. .+..+.+|||||+. +.+..+...+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKN-LARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-cccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 457899999999999999999998642 223344445442111111 23578899999962 2222222222
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
.+..... +.+..+++. . ......+..++..+. ...+|+++++||
T Consensus 101 ~~~~~~~-------------------------~~~~~v~d~------~----~~~~~~~~~i~~~l~-~~~~~~iiv~nK 144 (196)
T PRK00454 101 LRTRENL-------------------------KGVVLLIDS------R----HPLKELDLQMIEWLK-EYGIPVLIVLTK 144 (196)
T ss_pred HHhCccc-------------------------eEEEEEEec------C----CCCCHHHHHHHHHHH-HcCCcEEEEEEC
Confidence 1111000 011000000 0 011222222222222 247899999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
+|...........+.+.+.+... ..+++++||+.+.|++++.+.
T Consensus 145 ~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~Sa~~~~gi~~l~~~ 188 (196)
T PRK00454 145 ADKLKKGERKKQLKKVRKALKFG--DDEVILFSSLKKQGIDELRAA 188 (196)
T ss_pred cccCCHHHHHHHHHHHHHHHHhc--CCceEEEEcCCCCCHHHHHHH
Confidence 95421111122233454554432 467999999999998887544
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-09 Score=98.86 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=77.5
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccc-c-CCcccc-ccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTH-V-EGEVNP-VRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~-~-~gt~dp-~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
|.+.|.+|+|||+|++++.+........+. . ..|+.. ...+.+.+..+.+|||||.+. +..+.....++...++..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES-LRSLWDKYYAECHAIIYV 80 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh-hHHHHHHHhCCCCEEEEE
Confidence 789999999999999999876432111111 0 011111 112333356788999999654 333333333222221111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ + ..+.+.+..+..++.. .+. .......|+++++||+|. .. .
T Consensus 81 v--------------d--~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~p~ilv~NK~D~--~~--~ 122 (167)
T cd04160 81 I--------------D--STDRERFEESKSALEK-----------------VLR-NEALEGVPLLILANKQDL--PD--A 122 (167)
T ss_pred E--------------E--CchHHHHHHHHHHHHH-----------------HHh-ChhhcCCCEEEEEEcccc--cc--C
Confidence 1 0 1111111111111111 111 111247899999999954 21 1
Q ss_pred chHHHHHHHHHhc-----CCCCeEEeechhhhhhhCCCC
Q psy17315 404 KWLPKIKEWVDAN-----DPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 404 ~~~~~l~~~~~~~-----~~~~~vi~iSA~~~~gl~~L~ 437 (561)
...+++.++++.. ....+++++||++|.|++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 161 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGI 161 (167)
T ss_pred CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHH
Confidence 2223344443321 013579999999999987764
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.5e-09 Score=96.10 Aligned_cols=154 Identities=15% Similarity=0.084 Sum_probs=102.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.-+||.++|-.|||||-|+-++.+.... ....-|+--...+.. .....+++|||+|..+.+ ..+..+.|
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr-------tit~syYR 80 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR-------TITSSYYR 80 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh-------hhhHhhcc
Confidence 4479999999999999999999875521 111111111101101 112369999999985444 24567789
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|+.|++|.|.+. ...|+.+..+..++...... |+||||+.+......+....+.+ ..+..
T Consensus 81 ~ahGii~vyDiT~----------~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~---~~~~~ 147 (205)
T KOG0084|consen 81 GAHGIIFVYDITK----------QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFAD---ELGIP 147 (205)
T ss_pred CCCeEEEEEEccc----------HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHH---hcCCc
Confidence 9999999998763 44567776655555554333 89999999766554433333333 33334
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....||+.+.++.+.|-.|....
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHH
Confidence 478999999999999998887764
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.7e-09 Score=103.40 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=90.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.++|..|+||++|++.+....+.....+.+..+..+. .+.. ....+.+|||+|.+ .+..+...+.+....+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~-~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-DFFTNCGKIRFYCWDTAGQE-KFGGLRDGYYIHGQCA 89 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEE-EEEECCeEEEEEEEECCCch-hhhhhhHHHcccccEE
Confidence 346899999999999999999887765443332221122221 1111 22468899999954 3555554444333322
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..|+.+ +.... ...|+++|+||+|.. .
T Consensus 90 ilvf----------------D~~~~~s~~~i~~w~~~------------------i~~~~--~~~piilvgNK~Dl~--~ 131 (219)
T PLN03071 90 IIMF----------------DVTARLTYKNVPTWHRD------------------LCRVC--ENIPIVLCGNKVDVK--N 131 (219)
T ss_pred EEEE----------------eCCCHHHHHHHHHHHHH------------------HHHhC--CCCcEEEEEEchhhh--h
Confidence 2222 23334555555444433 11111 468999999999642 1
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....+.+ ++.... +.+++.+||++|.|+.++.+...+.
T Consensus 132 -~~v~~~~~-~~~~~~--~~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 132 -RQVKAKQV-TFHRKK--NLQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred -ccCCHHHH-HHHHhc--CCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 11112223 333332 5678999999999988876554443
|
|
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-09 Score=99.02 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=108.0
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+...++.+.|.+++|||.|+..++...|....-+++.-.. ..+.+.+.+ ...++|||+| +++++.+...+++++-.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef-~t~t~~vd~k~vkaqIWDTAG-QERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEF-ATRTVNVDGKTVKAQIWDTAG-QERYRAITSAYYRGAVG 89 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEE-EeeceeecCcEEEEeeecccc-hhhhccccchhhcccce
Confidence 3446799999999999999999999988777665542110 001111112 2467999999 56677777777777766
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
.+..+ +|++.....+|..|+.+ |+.... ...++++|.||+| +.
T Consensus 90 AllVY----------------DITr~~Tfenv~rWL~E------------------LRdhad-~nivimLvGNK~D--L~ 132 (222)
T KOG0087|consen 90 ALLVY----------------DITRRQTFENVERWLKE------------------LRDHAD-SNIVIMLVGNKSD--LN 132 (222)
T ss_pred eEEEE----------------echhHHHHHHHHHHHHH------------------HHhcCC-CCeEEEEeecchh--hh
Confidence 55555 67777888888888876 333332 4789999999995 43
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.-.....++.+.+++.. +..++.+||..+.+++.+.+..
T Consensus 133 ~lraV~te~~k~~Ae~~--~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 133 HLRAVPTEDGKAFAEKE--GLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred hccccchhhhHhHHHhc--CceEEEecccccccHHHHHHHH
Confidence 32333445555555543 6779999999999987765443
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-09 Score=99.47 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=82.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
++.+.|.+|+||++|++.+....+.....+...-..... .+. .....+.+|||+|.++ ...+.........-.+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL-DFHTNRGKIRFNVWDTAGQEK-FGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEE-EEEECCEEEEEEEEECCCChh-hccccHHHhcCCCEEEEE
Confidence 689999999999999999987655433222211111111 111 1224678999999643 333332222222111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.. +.... ...|+++|+||+|.. . ..
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~piiiv~nK~Dl~--~-~~ 120 (166)
T cd00877 80 F----------------DVTSRVTYKNVPNWHRD------------------LVRVC--GNIPIVLCGNKVDIK--D-RK 120 (166)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhC--CCCcEEEEEEchhcc--c-cc
Confidence 1 12233333333333222 22121 269999999999643 2 11
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
. ..+..++.... ..+++++||++|.|++++.+...+.
T Consensus 121 ~-~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 121 V-KAKQITFHRKK--NLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred C-CHHHHHHHHHc--CCEEEEEeCCCCCChHHHHHHHHHH
Confidence 1 12222333332 5689999999999998886655433
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-09 Score=100.32 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=89.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|..|+||++|++.+.+..|.....+.+.... ...+.. ....+.+|||+|- +....+...+.++...++.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~--~~~~~~~~~~~~l~iwDt~G~-~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY--TASFEIDEQRIELSLWDTSGS-PYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE--EEEEEECCEEEEEEEEECCCc-hhhhhcchhhcCCCCEEEE
Confidence 3689999999999999999998876544333321111 011111 2245789999994 4455555554444433333
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh--
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI-- 399 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~-- 399 (561)
.+ ++.+.+.+..+ ..|... +.... ...|+++|+||+|....
T Consensus 79 vf----------------dit~~~Sf~~~~~~w~~~------------------i~~~~--~~~~iilVgnK~DL~~~~~ 122 (178)
T cd04131 79 CF----------------DISRPETLDSVLKKWRGE------------------IQEFC--PNTKVLLVGCKTDLRTDLS 122 (178)
T ss_pred EE----------------ECCChhhHHHHHHHHHHH------------------HHHHC--CCCCEEEEEEChhhhcChh
Confidence 22 33444555543 233322 22222 36899999999965210
Q ss_pred --------hhccchHHHHHHHHHhcCCCC-eEEeechhhhhh-hCCCCHHH
Q psy17315 400 --------KKKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQ-LVDMPDDE 440 (561)
Q Consensus 400 --------~~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~g-l~~L~~~~ 440 (561)
.......++..++++.. +. +++.+||++|.+ +.++....
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~--~~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQL--GAEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHh--CCCEEEECccCcCCcCHHHHHHHH
Confidence 00112234555666554 54 789999999985 87775443
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-09 Score=97.46 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=79.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+....+.....+.. + .+.. ..+... ...+.+|||+|.++....+...+.+....++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI-G-VDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccce-e-EEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 579999999999999999998876543322221 1 1110 112222 2467899999965432233333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|+.. +.........|+++|+||+|.. ..
T Consensus 81 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~iiv~nK~Dl~--~~ 124 (170)
T cd04115 81 FVY----------------DVTNMASFHSLPSWIEE------------------CEQHSLPNEVPRILVGNKCDLR--EQ 124 (170)
T ss_pred EEE----------------ECCCHHHHHhHHHHHHH------------------HHHhcCCCCCCEEEEEECccch--hh
Confidence 111 12222333333333222 1112212468999999999643 21
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhh---hhhhCCC
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVF---EHQLVDM 436 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~---~~gl~~L 436 (561)
.....+...++.... ..+++.+||++ +.++.++
T Consensus 125 ~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 125 IQVPTDLAQRFADAH--SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred cCCCHHHHHHHHHHc--CCcEEEEeccCCcCCCCHHHH
Confidence 222223333444433 57799999999 5554444
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-09 Score=99.65 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=79.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+||++|++.+....+. ... ++.|. + ...+......+.+|||+|..+ ...+...+.++...++..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~-pt~g~-~-~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~ad~~i~v~- 75 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTI-PTIGF-N-VETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVV- 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccC-CCCCc-c-eEEEEECCEEEEEEECCCCHh-HHHHHHHHhcCCCEEEEEE-
Confidence 6889999999999999999766553 222 21221 1 112223345688999999644 4445545444443332222
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+..+.+.+..+..++.. .+.... ....|+++++||+|.. . ...
T Consensus 76 ---------------D~~~~~s~~~~~~~~~~-----------------~~~~~~-~~~~piilv~NK~Dl~--~--~~~ 118 (159)
T cd04150 76 ---------------DSNDRERIGEAREELQR-----------------MLNEDE-LRDAVLLVFANKQDLP--N--AMS 118 (159)
T ss_pred ---------------eCCCHHHHHHHHHHHHH-----------------HHhcHH-hcCCCEEEEEECCCCC--C--CCC
Confidence 11222222222222111 111111 1368999999999542 1 111
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+++.+.+... .....++++||++|.|++++.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 22332222110 1134577999999999887743
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-09 Score=107.46 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC------Cccc------------CCCcccccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS------AAAE------------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~------~~~~------------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
.|+++|.+|+|||||+|+|.... ..+. ...|+|.+.... .+.+.++.++||||.....
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 38999999999999999996321 1111 123555543322 2345679999999976422
Q ss_pred ccccccccccccccCCEEEEEeccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
......++.+|++++|+|+.
T Consensus 79 -----~~~~~~l~~aD~ailVVDa~ 98 (270)
T cd01886 79 -----IEVERSLRVLDGAVAVFDAV 98 (270)
T ss_pred -----HHHHHHHHHcCEEEEEEECC
Confidence 23456678899999999876
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.7e-09 Score=100.47 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=87.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+++..+.....+++..+... ..+.+. ...+.+|||+|.+. +..+...+.+....++.
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~-~~i~~~~~~i~l~l~Dt~G~~~-~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-RMITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAAGALL 84 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEE-EEEEECCEEEEEEEEeCCCcHH-HHHHHHHHhccCCEEEE
Confidence 579999999999999999999876544332222111100 011111 13577999999543 44444433322221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+...+..+..|+.. +.... ....|+++|+||+|. ....
T Consensus 85 v~----------------D~~~~~s~~~l~~~~~~------------------~~~~~-~~~~piiiv~nK~Dl--~~~~ 127 (210)
T PLN03108 85 VY----------------DITRRETFNHLASWLED------------------ARQHA-NANMTIMLIGNKCDL--AHRR 127 (210)
T ss_pred EE----------------ECCcHHHHHHHHHHHHH------------------HHHhc-CCCCcEEEEEECccC--cccc
Confidence 11 12222333333333221 11111 136899999999954 3212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+...++++.. +.+++.+||+++.|+.++.+...+.
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 128 AVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAK 166 (210)
T ss_pred CCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22344555555544 5789999999999998875554433
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-09 Score=111.51 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=94.3
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCc----------------ccCCCcccccCccccc--cCCeEEEEeCCCcccC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAA----------------AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKG 154 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~----------------~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~ 154 (561)
.+..++|+++|.+++|||||+++|++.... .....|+|.+...... ....+.++||||...
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~- 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD- 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH-
Confidence 345688999999999999999999863210 0114577766533221 234789999999642
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
+.......+..+|++++|+|+...- .....+.+. .+..+..+ +.||+|+..........
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~-------~~~t~~~~~----~~~~~g~~~~IvviNK~D~~~~~~~~~~i 150 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGP-------MPQTREHIL----LARQVGVPYLVVFLNKVDLVDDEELLELV 150 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCC-------chhHHHHHH----HHHHcCCCEEEEEEEecCCcchHHHHHHH
Confidence 1223345567899999999875310 011111121 22223332 69999987322111111
Q ss_pred HHHHHHHhhhcC----CCcEEEEEccCCC--------CHHHHHHHHHhhc
Q psy17315 231 EGEKKMLLGRVG----TNLKVGIVGVPNV--------GKSTFFNVLTKRA 268 (561)
Q Consensus 231 ~~~l~~l~~~~~----~~~~i~isg~~~~--------Gks~l~~~l~~~~ 268 (561)
..++...+.... ..+.+.+||.+|. +..+|++.+.+..
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 151 EMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 123333333332 2478999999983 6788888887764
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.1e-09 Score=96.36 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=80.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhh--ccCCCcccccCCccccc-cchh---hhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR--AFEDDDVTHVEGEVNPV-RDIE---IINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~--~~~~~~v~~~~gt~dp~-~~~~---~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
++.+.|.+|+||++|++.+.+. .+.. .+.++.|- +.. ..+. ....++.+|||+|.+ .+..+.....+....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~-~~~~t~~~-~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~d~ 78 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK-NYLMTTGC-DFVVKEVPVDTDNTVELFIFDSAGQE-LYSDMVSNYWESPSV 78 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc-cCCCceEE-EEEEEEEEeCCCCEEEEEEEECCCHH-HHHHHHHHHhCCCCE
Confidence 6899999999999999999864 2322 22222111 110 0111 122468899999954 344444333322222
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
++..+ ++++.+.+..+..|+.. +.... ...|+++|+||+|. .
T Consensus 79 ii~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~--~~~p~ilv~nK~Dl--~ 120 (164)
T cd04101 79 FILVY----------------DVSNKASFENCSRWVNK------------------VRTAS--KHMPGVLVGNKMDL--A 120 (164)
T ss_pred EEEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccc--c
Confidence 21111 11222222222222211 11111 35899999999954 2
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
............+.... +.+++++||+++.|+.++.+...+
T Consensus 121 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 121 DKAEVTDAQAQAFAQAN--QLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred cccCCCHHHHHHHHHHc--CCeEEEEeCCCCCChHHHHHHHHH
Confidence 21111222223333322 567899999999999887655443
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-09 Score=94.99 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=83.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
++.+.|.+|+|||+|++.+.+..+.....+.+.-+..+. .........+.+||+||.+. +..+.....+....++..+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-FRSITPSYYRGAHGAILVY 80 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-HHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999998865554222211111111 01111235678999999643 4444433332222111111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
+..+.+.+..+..++.. +..... ...|+++++||+|. ......
T Consensus 81 ----------------d~~~~~~~~~~~~~~~~------------------~~~~~~-~~~p~ivv~nK~D~--~~~~~~ 123 (159)
T cd00154 81 ----------------DITNRESFENLDKWLKE------------------LKEYAP-ENIPIILVGNKIDL--EDQRQV 123 (159)
T ss_pred ----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCcEEEEEEcccc--cccccc
Confidence 11111222222222111 111110 35899999999955 211233
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..+.++++.... +.+++.+||+++.|+.++.+
T Consensus 124 ~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 124 STEEAQQFAKEN--GLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred cHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHH
Confidence 445566666553 67899999999999877643
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-09 Score=101.35 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=85.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+||++|++.+.+..|.....+.+.........+......+.+|||+|.+ .+..+...+.+....++..+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~-~~~~l~~~~~~~a~~~ilv~- 79 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQE-EFDRLRSLSYADTDVIMLCF- 79 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCCh-hccccccccccCCCEEEEEE-
Confidence 6899999999999999999988664432222111110000111122468899999953 34444443332222222111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc-
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN- 403 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~- 403 (561)
.+.+.+.+..+. .|+.. +.... ...|+++|+||+|........
T Consensus 80 ---------------dv~~~~sf~~~~~~~~~~------------------i~~~~--~~~piilvgNK~Dl~~~~~~~~ 124 (189)
T cd04134 80 ---------------SVDSPDSLENVESKWLGE------------------IREHC--PGVKLVLVALKCDLREARNERD 124 (189)
T ss_pred ---------------ECCCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEEChhhccChhhHH
Confidence 233334443332 12221 11111 368999999999652211000
Q ss_pred ---------chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 404 ---------KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 404 ---------~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
...++..+++... ...+++.+||++|.|++++.+...+.
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 125 DLQRYGKHTISYEEGLAVAKRI-NALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred HHhhccCCCCCHHHHHHHHHHc-CCCEEEEccCCcCCCHHHHHHHHHHH
Confidence 0112233333332 13578999999999998886655443
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-09 Score=100.62 Aligned_cols=162 Identities=10% Similarity=0.149 Sum_probs=87.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...++.+.|.+|+||++|++.++...+. .+.++.|..-....+... ...+.+|||||.+ .+..+...+.+....+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE-RFRTLTSSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECCEEEEEEEEECCCch-hhHHHHHHHHhcCCEE
Confidence 3468999999999999999999987542 333332321011112222 2367899999954 3555544444333222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+.+.+..+.+... ..+.........|+++|+||+|. ..
T Consensus 90 vlv~----------------D~~~~~sf~~~~~~~~-----------------~~~~~~~~~~~~~~ilv~NK~Dl--~~ 134 (211)
T PLN03118 90 ILVY----------------DVTRRETFTNLSDVWG-----------------KEVELYSTNQDCVKMLVGNKVDR--ES 134 (211)
T ss_pred EEEE----------------ECCCHHHHHHHHHHHH-----------------HHHHHhcCCCCCCEEEEEECccc--cc
Confidence 2211 1122222222221110 01111111135799999999954 22
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......+...++.... +.+++++||+++.|++++.+.....+
T Consensus 135 ~~~i~~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 135 ERDVSREEGMALAKEH--GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred cCccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122223333444433 56789999999999988866655443
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.4e-09 Score=114.41 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=89.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCc---------cc------CCCcccccCccc--ccc--C---CeEEEEeCCCcccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAA---------AE------NFPFCTIDPNEN--NKV--P---AFLNVVDIAGLVKGA 155 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~---------~~------~~~~~T~~~~~~--~~~--~---~~i~l~DtpG~~~~~ 155 (561)
+++++|.+++|||||+++|...... +. ...|.|...... .+. + ..+.||||||.....
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 6999999999999999999764311 11 123555543221 111 1 468999999997543
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEG 232 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~ 232 (561)
. .....++.||++++|+|++... .......+ ...+ ....+ ++||+|+.... ...
T Consensus 85 ~-------~v~~~l~~aD~aILVvDat~g~-------~~qt~~~~---~~~~-~~~ipiIiViNKiDl~~~~-----~~~ 141 (595)
T TIGR01393 85 Y-------EVSRSLAACEGALLLVDAAQGI-------EAQTLANV---YLAL-ENDLEIIPVINKIDLPSAD-----PER 141 (595)
T ss_pred H-------HHHHHHHhCCEEEEEecCCCCC-------CHhHHHHH---HHHH-HcCCCEEEEEECcCCCccC-----HHH
Confidence 2 2234578899999999986321 01111111 1111 11122 89999986321 111
Q ss_pred HHHHHhhhcC--CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 233 EKKMLLGRVG--TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 233 ~l~~l~~~~~--~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
....+..... ....+.+||++|.|+..|+++|.+..+
T Consensus 142 ~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 142 VKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 1222222222 224799999999999999999998764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-09 Score=98.81 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=85.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|.+|+|||+|+..+....|.....+.+.........+.....++.+|||+|. +.+..+...+.++...++..+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ-EDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCc-hhhhhhhhhhcCCCCEEEEEE
Confidence 4689999999999999999998766544433321111000111112246789999995 445555544443332222222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
++.+.+.+..+.. |+.. +.... ...|+++|+||+|......
T Consensus 81 ----------------d~~~~~sf~~~~~~~~~~------------------~~~~~--~~~piilvgnK~Dl~~~~~~~ 124 (174)
T cd01871 81 ----------------SLVSPASFENVRAKWYPE------------------VRHHC--PNTPIILVGTKLDLRDDKDTI 124 (174)
T ss_pred ----------------ECCCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEeeChhhccChhhH
Confidence 2222233333221 2111 11111 3689999999996521100
Q ss_pred --------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 --------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 --------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....++..++++.. ...+++++||++|.|++++.+..
T Consensus 125 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 125 EKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred HHHhhccCCCCCHHHHHHHHHHc-CCcEEEEecccccCCHHHHHHHH
Confidence 011223334444443 12478999999999998875543
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-09 Score=98.02 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=81.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.+.|.+|+|||+|++.+....+. .+.++.|. + ...+...+..+.+|||+|.++ +..+...+.+....++..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~-~-~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGF-N-VETVTYKNVKFNVWDVGGQDK-IRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCccc-c-eEEEEECCEEEEEEECCCCHH-HHHHHHHHhccCCEEEEE
Confidence 357999999999999999999876442 22222221 1 112222345688999999644 455555544433322222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+...+..+..++.+ .+.... ..+.|+++|+||+|. .. .
T Consensus 84 ~----------------D~t~~~s~~~~~~~~~~-----------------~~~~~~-~~~~piilv~NK~Dl--~~--~ 125 (168)
T cd04149 84 V----------------DSADRDRIDEARQELHR-----------------IINDRE-MRDALLLVFANKQDL--PD--A 125 (168)
T ss_pred E----------------eCCchhhHHHHHHHHHH-----------------HhcCHh-hcCCcEEEEEECcCC--cc--C
Confidence 1 11111222222222111 111111 146899999999954 21 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCC
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~ 437 (561)
...+++.+++... ....+++++||++|.|+.++.
T Consensus 126 ~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 126 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 1234455543211 012468999999999987764
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-09 Score=99.22 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=77.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
+|.+.|.+|+||++|++.+.+..+.. .. ++.|.. ...+.. ....+.+|||+|..+ +..+...+.+....++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~-~t~~~~--~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~iv~v~ 75 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TI-PTVGFN--VEMLQLEKHLSLTVWDVGGQEK-MRTVWKCYLENTDGLVYVV 75 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-cc-CccCcc--eEEEEeCCceEEEEEECCCCHh-HHHHHHHHhccCCEEEEEE
Confidence 37899999999999999999886532 12 222211 111211 124688999999643 3333333332222221111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
+..+...+..+..++.. .+... .....|+++|+||+|.... .
T Consensus 76 ----------------D~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~piilv~nK~Dl~~~----~ 117 (160)
T cd04156 76 ----------------DSSDEARLDESQKELKH-----------------ILKNE-HIKGVPVVLLANKQDLPGA----L 117 (160)
T ss_pred ----------------ECCcHHHHHHHHHHHHH-----------------HHhch-hhcCCCEEEEEECcccccC----c
Confidence 11111112222111111 11111 1247899999999964211 1
Q ss_pred hHHHHHHHHH--hc--CCCCeEEeechhhhhhhCCCCHH
Q psy17315 405 WLPKIKEWVD--AN--DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 405 ~~~~l~~~~~--~~--~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..+++...+. .. ..+.+++++||++|.|++++.+.
T Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 118 TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 1223332221 10 01346899999999999887443
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.8e-09 Score=91.91 Aligned_cols=158 Identities=15% Similarity=0.240 Sum_probs=112.2
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccc-cccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVN-PVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~d-p~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..|.|.+|+||++|+..+....|..+.+..+ |- | .++.+.+.+ .+|.+|||+| +++++.+...+.++....+..
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTi-Gv-DfkirTv~i~G~~VkLqIwDtAG-qErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTI-GV-DFKIRTVDINGDRVKLQIWDTAG-QERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEe-ee-eEEEEEeecCCcEEEEEEeeccc-HHHHHHHHHHHccCCceEEEE
Confidence 4577899999999999999887776665443 21 1 123333333 4688999999 677888888888888776555
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++++.+....|..|+++ ++... ...|-|+|.||.|. .+-+.
T Consensus 88 Y----------------DVTn~ESF~Nv~rWLee------------------i~~nc--dsv~~vLVGNK~d~--~~Rrv 129 (198)
T KOG0079|consen 88 Y----------------DVTNGESFNNVKRWLEE------------------IRNNC--DSVPKVLVGNKNDD--PERRV 129 (198)
T ss_pred E----------------ECcchhhhHhHHHHHHH------------------HHhcC--ccccceecccCCCC--cccee
Confidence 5 56777888888888876 22232 36888999999953 32233
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
..-+..+.++... +..++.+||+...+++.+...+.+.++..
T Consensus 130 V~t~dAr~~A~~m--gie~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 130 VDTEDARAFALQM--GIELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred eehHHHHHHHHhc--CchheehhhhhcccchHHHHHHHHHHHHH
Confidence 3445666776665 78899999999999888766666665554
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-09 Score=98.23 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=82.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+||++|++.+.+..+. .+.++.|. +. ..+...+..+.+|||||..+ ...+...+.+....++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~~~T~~~-~~-~~~~~~~~~i~l~Dt~G~~~-~~~~~~~~~~~ad~ii~V~- 74 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QPIPTIGF-NV-ETVEYKNLKFTIWDVGGKHK-LRPLWKHYYLNTQAVVFVV- 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCce-eE-EEEEECCEEEEEEECCCChh-cchHHHHHhccCCEEEEEE-
Confidence 3789999999999999999987432 12221111 11 12233345688999999654 3333333333332222211
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+..+.+.+..+..++.. .+.. ......|+++|+||+|.. . ...
T Consensus 75 ---------------D~s~~~s~~~~~~~~~~-----------------~~~~-~~~~~~piilv~NK~Dl~--~--~~~ 117 (169)
T cd04158 75 ---------------DSSHRDRVSEAHSELAK-----------------LLTE-KELRDALLLIFANKQDVA--G--ALS 117 (169)
T ss_pred ---------------eCCcHHHHHHHHHHHHH-----------------HhcC-hhhCCCCEEEEEeCcCcc--c--CCC
Confidence 11222223323222222 1111 111358999999999542 1 122
Q ss_pred HHHHHHHHHhcC----CCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 406 LPKIKEWVDAND----PGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 406 ~~~l~~~~~~~~----~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.+.+.+++.... ....++++||++|.|+.++.+...+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 118 VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 344444443110 012578899999999988866554443
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-10 Score=103.88 Aligned_cols=160 Identities=20% Similarity=0.237 Sum_probs=81.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHH---HHHHHHhhCCcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEIN---KIEKLVQRGDKK 319 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~---~l~~~~~~~~~~ 319 (561)
.+|.+.|.+|+|||+|++++.+.... .....++++ +... .+...+..+.+|||||+.+... .++....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~----- 75 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERV--IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSV----- 75 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccce--eccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHH-----
Confidence 57999999999999999999987421 122223333 2221 2233345678999999643210 0000000
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
...+. ....++++..|++... ..+......+..... ..+|+++++||+|. .
T Consensus 76 --~~~~~--------------~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~-~~~~~iiv~nK~Dl--~ 126 (174)
T cd01895 76 --LRTLK--------------AIERADVVLLVIDATE----------GITEQDLRIAGLILE-EGKALVIVVNKWDL--V 126 (174)
T ss_pred --HHHHH--------------HHhhcCeEEEEEeCCC----------CcchhHHHHHHHHHh-cCCCEEEEEecccc--C
Confidence 00000 0011122222222111 122233333333322 47999999999954 3
Q ss_pred hhccchHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 KKKNKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.......+.+.+.+.... ++.+++++||+++.|+.++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 170 (174)
T cd01895 127 EKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAI 170 (174)
T ss_pred CccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHH
Confidence 211122333333332221 24689999999999988875543
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-09 Score=104.43 Aligned_cols=150 Identities=16% Similarity=0.053 Sum_probs=83.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC-------------------------------cccCCCcccccCcccc--ccCCeEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA-------------------------------AAENFPFCTIDPNENN--KVPAFLN 144 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~-------------------------------~~~~~~~~T~~~~~~~--~~~~~i~ 144 (561)
.|+++|.+++|||||+.+|..... ......|+|++..... ..+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 389999999999999999953210 0011345666554331 2345799
Q ss_pred EEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhccccc
Q psy17315 145 VVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKADS 220 (561)
Q Consensus 145 l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D~ 220 (561)
++||||..... ..+...++.+|++++|+|++.......-.......+.+ ....... .+ ++||+|+
T Consensus 81 liDtpG~~~~~-------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHRDFV-------PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA----LLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChHHHH-------HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH----HHHHHcCCCeEEEEEEcccc
Confidence 99999974322 23345678899999999987421100000000011111 1112222 22 8999999
Q ss_pred cCcCCCC---CccHHHHHHHhhhcC----CCcEEEEEccCCCCHH
Q psy17315 221 KKKMGPK---KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKS 258 (561)
Q Consensus 221 ~~~~~~~---~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks 258 (561)
....... ......+...+.... ..+.+++||++|.|+.
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 8321000 011122332333322 3668999999999964
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=113.26 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=85.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccC------ccc------cc--------cCCeEEEEeCCCcccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP------NEN------NK--------VPAFLNVVDIAGLVKG 154 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~------~~~------~~--------~~~~i~l~DtpG~~~~ 154 (561)
+++.|+++|.+|+|||||+|+|++.........+.|.+. ... .. ....+.++||||....
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 456799999999999999999987652222222233221 100 00 0013789999998543
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCC----
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPK---- 227 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~---- 227 (561)
.. .....++.+|++++|+|++.. .....+..+.. +.....+ ++||+|+.......
T Consensus 85 ~~-------~~~~~~~~aD~~IlVvDa~~g-------~~~qt~e~i~~----~~~~~vpiIvviNK~D~~~~~~~~~~~~ 146 (586)
T PRK04004 85 TN-------LRKRGGALADIAILVVDINEG-------FQPQTIEAINI----LKRRKTPFVVAANKIDRIPGWKSTEDAP 146 (586)
T ss_pred HH-------HHHHhHhhCCEEEEEEECCCC-------CCHhHHHHHHH----HHHcCCCEEEEEECcCCchhhhhhcCch
Confidence 31 112345779999999988631 01111222222 1222222 89999986321100
Q ss_pred ----C-cc----HHHH----H----HHhh-------------hcCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 228 ----K-TD----EGEK----K----MLLG-------------RVGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 228 ----~-~~----~~~l----~----~l~~-------------~~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
. .+ ...+ . .+.. .....+.+++||.+|.|+..|+..+..
T Consensus 147 ~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 147 FLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 00 0001 0 1110 012346799999999999998887753
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.2e-09 Score=96.49 Aligned_cols=158 Identities=14% Similarity=0.130 Sum_probs=78.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+||++|++++.+..+... ++.+...+.....+.....++.+|||+|..+....+...+ ....-.+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~-~~ad~~ilv~- 78 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEI-RKANVICLVY- 78 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhc-ccCCEEEEEE-
Confidence 688999999999999999998866432 2221111100011222335688999999654332222221 1111111111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
++.+.+.+..+.... ...+.... ...|+++|+||+|..........
T Consensus 79 ---------------d~~~~~s~~~~~~~~-----------------~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~ 124 (166)
T cd01893 79 ---------------SVDRPSTLERIRTKW-----------------LPLIRRLG--VKVPIILVGNKSDLRDGSSQAGL 124 (166)
T ss_pred ---------------ECCCHHHHHHHHHHH-----------------HHHHHHhC--CCCCEEEEEEchhcccccchhHH
Confidence 112222222221100 01122221 36899999999964221100011
Q ss_pred HHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 406 LPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 406 ~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+.+...........+++++||+++.|++++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 125 EEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred HHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 12222222221111378999999999988875543
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-09 Score=112.26 Aligned_cols=157 Identities=15% Similarity=0.054 Sum_probs=88.2
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCC----------------cccCCCcccccCccccc--cCCeEEEEeCCCcccC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSA----------------AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKG 154 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~----------------~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~ 154 (561)
....++|+++|.+++|||||+++|++... .....+|+|++...... ...++.++||||...
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD- 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-
Confidence 34557899999999999999999974310 11223788887644322 234789999999842
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
+.......+..+|++++|+|+...- .....+ .-..+.....+ +.||+|+.+........
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~-------~~qt~e----~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i 199 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGP-------MPQTKE----HILLARQVGVPSLVVFLNKVDVVDDEELLELV 199 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCC-------chhHHH----HHHHHHHcCCCeEEEEEEeeccCCHHHHHHHH
Confidence 2222334456799999999875210 001111 11223333332 58999997421111111
Q ss_pred HHHHHHHhhhcC----CCcEEEEEcc---CCCC-------HHHHHHHHHhh
Q psy17315 231 EGEKKMLLGRVG----TNLKVGIVGV---PNVG-------KSTFFNVLTKR 267 (561)
Q Consensus 231 ~~~l~~l~~~~~----~~~~i~isg~---~~~G-------ks~l~~~l~~~ 267 (561)
..++..++.... ..+.+++|+. +|.| ..+|++++.+.
T Consensus 200 ~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 200 EMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 112333332222 2345666665 4444 56777777665
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.5e-09 Score=110.59 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=89.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc---ccCCCcccccCc-------------------ccc---------ccCCeE
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA---AENFPFCTIDPN-------------------ENN---------KVPAFL 143 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~---~~~~~~~T~~~~-------------------~~~---------~~~~~i 143 (561)
..++|+++|.+++|||||+++|++.... ..-..|.|.+.. +.. .....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3478999999999999999999874311 000112222111 000 013468
Q ss_pred EEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhcccc
Q psy17315 144 NVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKAD 219 (561)
Q Consensus 144 ~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D 219 (561)
.++||||.... ...+...+..+|++++|+|++... ......+.+.. +..+. ++ ++||+|
T Consensus 83 ~liDtPGh~~f-------~~~~~~g~~~aD~aIlVVDa~~g~------~~~qt~e~l~~----l~~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 83 SFVDAPGHETL-------MATMLSGAALMDGALLVIAANEPC------PQPQTKEHLMA----LEIIGIKNIVIVQNKID 145 (406)
T ss_pred EEEECCCHHHH-------HHHHHHHHHHCCEEEEEEECCCCc------cccchHHHHHH----HHHcCCCeEEEEEEccc
Confidence 99999997432 223455567889999999986321 01111222221 12221 22 799999
Q ss_pred ccCcCCCCCccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 220 SKKKMGPKKTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 220 ~~~~~~~~~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+........ ....+..+.... ...+.+++||++|.|+.+|+++|.+..
T Consensus 146 l~~~~~~~~-~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 146 LVSKEKALE-NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred cCCHHHHHH-HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 974211100 011122222211 234689999999999999999998753
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-09 Score=96.62 Aligned_cols=152 Identities=16% Similarity=0.085 Sum_probs=79.2
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~ 326 (561)
|.+.|.+|+|||+|++.+++..+....+.++.|.. ...+...+..+.+|||||..+ +..+...+.+....++..+
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~--~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~-- 76 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN--VESFEKGNLSFTAFDMSGQGK-YRGLWEHYYKNIQGIIFVI-- 76 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcceecCccccc--eEEEEECCEEEEEEECCCCHh-hHHHHHHHHccCCEEEEEE--
Confidence 68899999999999999998754334444433431 111222345688999999654 4444444433332221111
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhhhhccch
Q psy17315 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 327 ~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+..+......+..++.. ++..... ...+|+++|+||+|. .. ...
T Consensus 77 --------------D~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~p~iiv~NK~Dl--~~--~~~ 121 (162)
T cd04157 77 --------------DSSDRLRLVVVKDELEL-----------------LLNHPDIKHRRVPILFFANKMDL--PD--ALT 121 (162)
T ss_pred --------------eCCcHHHHHHHHHHHHH-----------------HHcCcccccCCCCEEEEEeCccc--cC--CCC
Confidence 01111111111111111 1111011 136899999999954 22 111
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..++.+.+... ....+++++||++|.|++++.+
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 122 AVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred HHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 23333322211 0123589999999999888744
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-09 Score=105.89 Aligned_cols=60 Identities=28% Similarity=0.394 Sum_probs=40.4
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhH-hhhcccHHHHH
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINE-ELRLKDVEHIE 303 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~-el~l~Dt~Gi~ 303 (561)
...+.|.+.|.+|+|||+|++.+++..+.....+. .|.++.. .+.+.+. .+.+|||||+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLF--ATLDPTTRRLRLPDGREVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccc--eeccceeEEEEecCCceEEEeCCCccc
Confidence 44579999999999999999999997543322221 2233332 2233333 78999999973
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-09 Score=99.92 Aligned_cols=152 Identities=18% Similarity=0.087 Sum_probs=79.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.+.|.+|+|||+|++.+....+.. . .++.|.. ...+.....++.+|||||..+ +......+.++...++..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~-~~t~~~~--~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-T-SPTIGSN--VEEIVYKNIRFLMWDIGGQES-LRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-c-CCccccc--eEEEEECCeEEEEEECCCCHH-HHHHHHHHhhcCCEEEEE
Confidence 4679999999999999999998765432 2 2222211 122333345789999999643 444443333333222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+.+..+...+. ..+... ....+|+++++||+|... .
T Consensus 90 ~----------------D~s~~~~~~~~~~~l~-----------------~~~~~~-~~~~~p~viv~NK~Dl~~----~ 131 (174)
T cd04153 90 I----------------DSTDRERLPLTKEELY-----------------KMLAHE-DLRKAVLLVLANKQDLKG----A 131 (174)
T ss_pred E----------------ECCCHHHHHHHHHHHH-----------------HHHhch-hhcCCCEEEEEECCCCCC----C
Confidence 1 1111111111111111 111111 124689999999996421 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
...+++.+.+... ....+++++||++|.|++++.+
T Consensus 132 ~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 132 MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLD 169 (174)
T ss_pred CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHH
Confidence 1122333322210 1135789999999999877643
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-09 Score=99.13 Aligned_cols=153 Identities=17% Similarity=0.118 Sum_probs=81.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|..|+|||+|++.+....+. ...+ +.|. + ...+...+..+.+|||+|.++ ...+...+.++...++..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~-t~~~-~-~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIP-TIGF-N-VETVTYKNISFTVWDVGGQDK-IRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCC-cccc-c-eEEEEECCEEEEEEECCCChh-hHHHHHHHhCCCCEEEEE
Confidence 468999999999999999999755442 2222 1121 1 112223345688999999544 444555544444333222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.. .+.... ....|+++|+||+|.... .
T Consensus 88 ~----------------D~t~~~s~~~~~~~l~~-----------------~~~~~~-~~~~piilv~NK~Dl~~~---~ 130 (175)
T smart00177 88 V----------------DSNDRDRIDEAREELHR-----------------MLNEDE-LRDAVILVFANKQDLPDA---M 130 (175)
T ss_pred E----------------ECCCHHHHHHHHHHHHH-----------------HhhCHh-hcCCcEEEEEeCcCcccC---C
Confidence 2 12222333322222221 111111 136899999999954211 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHH
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..+++.+.+... .....++++||++|.|+.++.+.
T Consensus 131 -~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 131 -KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred -CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 122333322111 01235778999999998877543
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.4e-09 Score=97.02 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=79.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+||++|++.+....+.. .+.++.+.. ....+... ...+.+|||+|.............+....++..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~-~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIG-EYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccc-ccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 37899999999999999988765432 222211111 01111122 235779999996531111111122222111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhhhhc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+ ++.+.+.+..+..+... +..... ....|+++|+||+|. ....
T Consensus 79 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~piilv~nK~Dl--~~~~ 122 (165)
T cd04146 79 Y----------------SITDRSSFDEISQLKQL------------------IREIKKRDREIPVILVGNKADL--LHYR 122 (165)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHHhcCCCCCCEEEEEECCch--HHhC
Confidence 1 12222333333222211 111110 136899999999964 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhh-hhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEH-QLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~-gl~~L~~~~~ 441 (561)
....+...++.+.. +.+++++||+++. |+.++.+...
T Consensus 123 ~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 123 QVSTEEGEKLASEL--GCLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred ccCHHHHHHHHHHc--CCEEEEeCCCCCchhHHHHHHHHH
Confidence 22233344444443 5789999999994 8888755543
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.7e-09 Score=111.81 Aligned_cols=151 Identities=19% Similarity=0.091 Sum_probs=86.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCc-------------------------------ccCCCcccccCcccc--ccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAA-------------------------------AENFPFCTIDPNENN--KVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~-------------------------------~~~~~~~T~~~~~~~--~~~ 140 (561)
...++|+++|.+++|||||+++|+..... .....|+|.+..... ...
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 34578999999999999999999842210 011336666554332 234
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~N 216 (561)
..+.++||||... +.......++.+|++++|+|++..+... .....+.+. ...... .+ ++|
T Consensus 85 ~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~----~~~t~~~~~----~~~~~~~~~iIVviN 149 (426)
T TIGR00483 85 YEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFEV----QPQTREHAF----LARTLGINQLIVAIN 149 (426)
T ss_pred eEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCccc----CCchHHHHH----HHHHcCCCeEEEEEE
Confidence 5789999999532 2223345568899999999987532110 000111111 111222 12 799
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~ 259 (561)
|+|+....... .....++..+..... ....+.+||++|.|+..
T Consensus 150 K~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 150 KMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 99997421100 011223333333332 35679999999999874
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.9e-09 Score=98.97 Aligned_cols=157 Identities=11% Similarity=0.146 Sum_probs=81.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+||++|++.+....+... +..+.+.... ..+.+.+ ..+.+|||+|..+ +..+...+......++..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-YRRTVEEMHR-KEYEVGGVSLTLDILDTSGSYS-FPAMRKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-CCCchhhhee-EEEEECCEEEEEEEEECCCchh-hhHHHHHHhhcCCEEEEE
Confidence 378999999999999999998765432 2221111110 1122222 3578999999543 343433333222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-c
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-K 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-~ 402 (561)
+ ++.+.+.+..+..++.. +........+|+++|+||+|. ... .
T Consensus 78 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~NK~Dl--~~~~~ 121 (198)
T cd04147 78 Y----------------AVDDPESFEEVERLREE------------------ILEVKEDKFVPIVVVGNKADS--LEEER 121 (198)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEEcccc--ccccc
Confidence 1 11222233322222111 111111146899999999954 221 1
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+...+..... .+.+++++||++|.|+.++.+...+
T Consensus 122 ~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 122 QVPAKDALSTVELD-WNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred cccHHHHHHHHHhh-cCCcEEEecCCCCCCHHHHHHHHHH
Confidence 11112222222111 1467899999999999988665544
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.4e-09 Score=96.86 Aligned_cols=151 Identities=10% Similarity=0.091 Sum_probs=84.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|..|+||++|+..+....|... ++++.+.. ...+...+ ..+.+|||+|.+.. .+.+....++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~--~~~i~~~~~~~~l~i~D~~g~~~~------~~~~~~~~~ilv 72 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRF--KKEVLVDGQSHLLLIRDEGGAPDA------QFASWVDAVIFV 72 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccce--EEEEEECCEEEEEEEEECCCCCch------hHHhcCCEEEEE
Confidence 588999999999999998877655433 22222211 11122222 35788999996421 122222222222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.+ +.........|+++|+||+|........
T Consensus 73 ~----------------d~~~~~sf~~~~~~~~~------------------i~~~~~~~~~piilvgnK~Dl~~~~~~~ 118 (158)
T cd04103 73 F----------------SLENEASFQTVYNLYHQ------------------LSSYRNISEIPLILVGTQDAISESNPRV 118 (158)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEeeHHHhhhcCCcc
Confidence 2 34555666655554433 1111111357999999998543211112
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+..+++.+.. .+.+++.+||+++.|++++.+..
T Consensus 119 v~~~~~~~~~~~~-~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 119 IDDARARQLCADM-KRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred cCHHHHHHHHHHh-CCCcEEEEecCCCCCHHHHHHHH
Confidence 2223334444432 14679999999999988875443
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-08 Score=93.95 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=81.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+||++|++.+++..+.....+. .+ +... .+... ...+.+||++|... +..+.....+....++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~~i~ 76 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPT-IE--DSYRKTIVVDGETYTLDILDTAGQEE-FSAMRDLYIRQGDGFIL 76 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCC-hh--HeEEEEEEECCEEEEEEEEECCChHH-HHHHHHHHHhcCCEEEE
Confidence 3789999999999999999987543332222 11 1111 12222 24578999999654 33333333222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ...+.+.+..+..+... +.........|+++|+||+|.. ...
T Consensus 77 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ivv~nK~D~~--~~~ 120 (160)
T cd00876 77 VY----------------SITDRESFEEIKGYREQ------------------ILRVKDDEDIPIVLVGNKCDLE--NER 120 (160)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEECCccc--ccc
Confidence 11 11112222222222111 1111111379999999999643 212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+.+.++.... +.+++++||+++.|+.++.+.
T Consensus 121 ~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 121 QVSKEEGKALAKEW--GCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred eecHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHH
Confidence 22334555555443 468999999999998887544
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=98.94 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC---cccCC-C--------------cccccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA---AAENF-P--------------FCTIDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~---~~~~~-~--------------~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
.|+++|.+|+|||||+++|+.... ..+.. . |.|...... .+.+.++.++||||......
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~- 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA- 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH-
Confidence 389999999999999999986431 11100 1 111111110 12345799999999864321
Q ss_pred ccccccccccccccCCEEEEEecccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
....+++.+|.+++|+|+..
T Consensus 80 ------~~~~~l~~aD~~IlVvd~~~ 99 (237)
T cd04168 80 ------EVERSLSVLDGAILVISAVE 99 (237)
T ss_pred ------HHHHHHHHhCeEEEEEeCCC
Confidence 23456788999999998863
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-09 Score=98.91 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=83.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...++.+.|.+|+||++|++.+....+.. +.++.|.. ...+...+..+.+|||+|.+ ....+...+.++...++.
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~T~~~~--~~~~~~~~~~~~l~D~~G~~-~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--TIPTIGFN--VETVEYKNLKFTMWDVGGQD-KLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cCCccccc--eEEEEECCEEEEEEECCCCH-hHHHHHHHHhcCCCEEEE
Confidence 34689999999999999999997654432 22222221 11122334568899999954 455555555444333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+...+.. .+... ....+|+++|+||.|. .+
T Consensus 91 v~----------------D~t~~~s~~~~~~~l~~-----------------~~~~~-~~~~~piilv~NK~Dl--~~-- 132 (182)
T PTZ00133 91 VV----------------DSNDRERIGDAREELER-----------------MLSED-ELRDAVLLVFANKQDL--PN-- 132 (182)
T ss_pred EE----------------eCCCHHHHHHHHHHHHH-----------------HHhCH-hhcCCCEEEEEeCCCC--CC--
Confidence 22 12222323222222111 11111 1146899999999954 21
Q ss_pred cchHHHHHHHHHhc-CC--CCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDAN-DP--GATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~-~~--~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+.+... .+ ...++++||++|.|+.++.+-..
T Consensus 133 ~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 133 AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 11122333322211 00 23467899999999988855443
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-08 Score=89.06 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=97.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc-ccCC-Ccc---cccCccccccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA-AENF-PFC---TIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~-~~~~-~~~---T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.+||.+||-+|||||||+-+++..... ..+. -|+ .+..+. ......+-+|||+|..+.+. + .-.+.|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRt----L---TpSyyR 82 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRT----L---TPSYYR 82 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhc----c---CHhHhc
Confidence 479999999999999999999866521 1111 111 111111 11234688999999875553 1 234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-------hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-------VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.|-.+++|.|.+.+ ..+.+++.+.+++..+--. |+||+|+..........--.+.+- -.
T Consensus 83 gaqGiIlVYDVT~R----------dtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~----h~ 148 (209)
T KOG0080|consen 83 GAQGIILVYDVTSR----------DTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK----HR 148 (209)
T ss_pred cCceeEEEEEccch----------hhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh----hC
Confidence 89999999988643 3556667666666543222 899999874322211000001111 12
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDD 272 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~ 272 (561)
-.-+..||++-.|++.-|..+.++..+.+
T Consensus 149 ~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 149 CLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred cEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 35688999999999999999988865433
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-09 Score=96.98 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=54.3
Q ss_pred EEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc-----------------------------------------
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN----------------------------------------- 136 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~----------------------------------------- 136 (561)
|+++|..++|||||+|+|.|.. .+++..| +|..+..-
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP-CTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS-TTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc-cccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 6899999999999999999987 4444333 22211100
Q ss_pred -----------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 137 -----------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 137 -----------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
......+.|+||||+........ ....+.+..+|++++|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~ 139 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDAN 139 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETT
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccC
Confidence 01234699999999976443322 33445568999999999764
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-09 Score=98.06 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=37.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhhH-hhhcccHHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIINE-ELRLKDVEHIE 303 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~~-el~l~Dt~Gi~ 303 (561)
.|.+.|.+|+|||+|++.|.+.....+..++ .|.+|... +...+. .+.+|||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPF--TTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCc--cccCCcceEEEcCCCCeEEEEecCccc
Confidence 4789999999999999999986543333222 23344332 223333 78999999973
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-09 Score=95.59 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=77.3
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~ 326 (561)
|.+.|.+|+|||+|++.+.+..+.....+.+.-.. ..+...+..+.+|||||..+ +..+...+.+....++..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~-- 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNM---RKVTKGNVTLKVWDLGGQPR-FRSMWERYCRGVNAIVYVV-- 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcce---EEEEECCEEEEEEECCCCHh-HHHHHHHHHhcCCEEEEEE--
Confidence 68999999999999999999866544433221111 11222234688999999543 3333333332222211111
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchH
Q psy17315 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWL 406 (561)
Q Consensus 327 ~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~ 406 (561)
+..+.+....+..++.. .+. ......+|+++|+||+|. .. .. ..
T Consensus 76 --------------d~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~p~iiv~nK~D~--~~-~~-~~ 119 (159)
T cd04159 76 --------------DAADRTALEAAKNELHD-----------------LLE-KPSLEGIPLLVLGNKNDL--PG-AL-SV 119 (159)
T ss_pred --------------ECCCHHHHHHHHHHHHH-----------------HHc-ChhhcCCCEEEEEeCccc--cC-Cc-CH
Confidence 11111222211111111 011 111247899999999954 22 11 12
Q ss_pred HHHHHHHH--h-cCCCCeEEeechhhhhhhCCCCH
Q psy17315 407 PKIKEWVD--A-NDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 407 ~~l~~~~~--~-~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..+.+... . .....+++++||++|.|++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 120 DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 22222211 0 11135789999999999887744
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=96.76 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=84.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|..|+||++|++.+....+. . +.++.|. + ...+...+..+.+|||+|. ..+..+...+.++..-++..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~-~~pt~g~-~-~~~~~~~~~~~~i~D~~Gq-~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-T-TIPTIGF-N-VETVEYKNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-c-ccCCcce-e-EEEEEECCEEEEEEECCCC-HHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999865443 1 2222221 1 1122333456889999994 44566665555444333222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+.+..+...+.. .+... .....|+++|+||+|... .
T Consensus 92 ~----------------D~s~~~s~~~~~~~l~~-----------------~l~~~-~~~~~piilv~NK~Dl~~----~ 133 (181)
T PLN00223 92 V----------------DSNDRDRVVEARDELHR-----------------MLNED-ELRDAVLLVFANKQDLPN----A 133 (181)
T ss_pred E----------------eCCcHHHHHHHHHHHHH-----------------HhcCH-hhCCCCEEEEEECCCCCC----C
Confidence 2 11222222222211111 11111 114689999999996422 1
Q ss_pred chHHHHHHHHHhcC--C-CCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDAND--P-GATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~--~-~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+++.+.+.... + ...++++||++|+|+.++.+..
T Consensus 134 ~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 173 (181)
T PLN00223 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
T ss_pred CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHH
Confidence 12344444432210 0 1246689999999988775443
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-08 Score=96.34 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=91.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc----CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV----PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~----~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|+|.+........|..+......... ...+.+|||+|..... ...-...+.+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~-------~~~~~y~~~~ 78 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR-------SLRPEYYRGA 78 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH-------HHHHHHhcCC
Confidence 7899999999999999999998763322222211111110111 2348899999986433 1223445889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCC------------ccHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKK------------TDEGEK 234 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~------------~~~~~l 234 (561)
+.+++|+|... .....+....+...+..... . +.||+|+........ ......
T Consensus 79 ~~~l~~~d~~~---------~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 79 NGILIVYDSTL---------RESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred CEEEEEEeccc---------chhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 99999998653 12233333444444444441 1 899999996642211 000001
Q ss_pred HHHhhhcCCCcEEEEEcc--CCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVGTNLKVGIVGV--PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~--~~~Gks~l~~~l~~~~ 268 (561)
.......... .+.+|+. ++.++..++.......
T Consensus 150 ~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 150 AVLPEVANPA-LLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred Hhhhhhcccc-eeEeecccCCCcCHHHHHHHHHHHH
Confidence 1111112223 7888888 8889888888877764
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=94.06 Aligned_cols=153 Identities=16% Similarity=0.095 Sum_probs=98.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+++.++|-+|||||.++-++.......+-..-...+.... ......+++|||.|..... ..+-+++|
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~-------ti~~sYyr 83 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR-------TITTAYYR 83 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH-------HHHHHHHh
Confidence 457999999999999999999986552222111111111100 1123468999999986444 24566789
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.|+.+++|+|.+.. ..++++..+...+.+.... |+||+|+.............+..-.+ -
T Consensus 84 gA~gi~LvyDitne----------~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G----~ 149 (207)
T KOG0078|consen 84 GAMGILLVYDITNE----------KSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG----I 149 (207)
T ss_pred hcCeeEEEEEccch----------HHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC----C
Confidence 99999999987632 2344444444444443332 99999999755544333333333322 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.-+-+||++|.++.+.|-.|+...
T Consensus 150 ~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 150 KFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred eEEEccccCCCCHHHHHHHHHHHH
Confidence 668899999999999999988764
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-09 Score=109.86 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=90.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-------C---------cccCCCcccccCccccc--cCCeEEEEeCCCcccCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-------A---------AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-------~---------~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~ 155 (561)
...++|+++|.+++|||||+++|++.. . ......|+|.+...... .+.++.++||||.....
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 445789999999999999999998431 1 01123677777543222 23468999999985322
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~ 231 (561)
......+..+|++++|+|+... ......+.+.. +.....+ +.||+|+...........
T Consensus 90 -------~~~~~~~~~~D~~ilVvda~~g-------~~~qt~e~l~~----~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~ 151 (394)
T TIGR00485 90 -------KNMITGAAQMDGAILVVSATDG-------PMPQTREHILL----ARQVGVPYIVVFLNKCDMVDDEELLELVE 151 (394)
T ss_pred -------HHHHHHHhhCCEEEEEEECCCC-------CcHHHHHHHHH----HHHcCCCEEEEEEEecccCCHHHHHHHHH
Confidence 2334556788999999987631 01111122221 2222222 589999874221111111
Q ss_pred HHHHHHhhhcC----CCcEEEEEccCCC--------CHHHHHHHHHh
Q psy17315 232 GEKKMLLGRVG----TNLKVGIVGVPNV--------GKSTFFNVLTK 266 (561)
Q Consensus 232 ~~l~~l~~~~~----~~~~i~isg~~~~--------Gks~l~~~l~~ 266 (561)
.++..++.... ..+.+.+|+.+|. |..+|+++|.+
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 152 MEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred HHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 23444443332 2578999999874 34566666654
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.9e-08 Score=94.47 Aligned_cols=154 Identities=21% Similarity=0.143 Sum_probs=87.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+|++++|.+|||||||++++.... ....+..|........ ......+.++||||..... .+ ....++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~----~~---~~~~~~ 80 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG----GL---RDGYYI 80 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhh----hh---hHHHhc
Confidence 34799999999999999997654333 2222222322211110 0112468899999964322 11 123456
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|.+... .+..+..+...+...... ++||+|+.++... .... .+... ....
T Consensus 81 ~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~----~~~~-~~~~~-~~~~ 144 (215)
T PTZ00132 81 KGQCAIIMFDVTSRI----------TYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK----ARQI-TFHRK-KNLQ 144 (215)
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC----HHHH-HHHHH-cCCE
Confidence 889999999876322 122222222222221111 7899998643211 1111 12221 2235
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
.+.+|+++|.|++..+.+|.......
T Consensus 145 ~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 145 YYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 68999999999999999998876443
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-09 Score=97.07 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=77.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+|||+|++.+....+.. ..+. .|. ....+...+..+.+|||||..+ +..+...+.+...-++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t-~~~--~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~ii~v~- 74 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPT-IGF--NVETVTYKNLKFQVWDLGGQTS-IRPYWRCYYSNTDAIIYVV- 74 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCc-cCc--CeEEEEECCEEEEEEECCCCHH-HHHHHHHHhcCCCEEEEEE-
Confidence 37899999999999999997765432 1111 111 1112223345688999999643 4444444333222221111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+..+...+.....++ ...++.. ....+|+++|+||+|. .. ...
T Consensus 75 ---------------d~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~~piiiv~nK~Dl--~~--~~~ 117 (158)
T cd04151 75 ---------------DSTDRDRLGTAKEEL-----------------HAMLEEE-ELKGAVLLVFANKQDM--PG--ALS 117 (158)
T ss_pred ---------------ECCCHHHHHHHHHHH-----------------HHHHhch-hhcCCcEEEEEeCCCC--CC--CCC
Confidence 011111111000100 0111111 1247899999999954 22 111
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..++.+.+... ..+.+++++||++|.|+.++.+.
T Consensus 118 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 118 EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 23333322111 01347999999999999887443
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-08 Score=94.33 Aligned_cols=156 Identities=18% Similarity=0.225 Sum_probs=81.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..++.+.|.+|+|||+|++.+.+..+.....+.+ | .+... .+...+ ..+.+|||+|... +......+.+....+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~~ 83 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI-G-VDFMIKTVEIKGEKIKLQIWDTAGQER-FRSITQSYYRSANAL 83 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-e-eEEEEEEEEECCEEEEEEEEECCCcHH-HHHHHHHHhcCCCEE
Confidence 4689999999999999999999775543322211 1 11111 122222 3577899999543 443333333222222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+....+..++.. +..... ...|+++|+||+|. ..
T Consensus 84 i~v~----------------d~~~~~s~~~~~~~~~~------------------l~~~~~-~~~~~i~v~NK~D~--~~ 126 (169)
T cd04114 84 ILTY----------------DITCEESFRCLPEWLRE------------------IEQYAN-NKVITILVGNKIDL--AE 126 (169)
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECccc--cc
Confidence 1111 11222222222222211 222211 36899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
..+...+..+.+.+.. ..+++++||++|.|+.++.+...
T Consensus 127 ~~~i~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 127 RREVSQQRAEEFSDAQ--DMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred ccccCHHHHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHHH
Confidence 1221112122222222 46799999999999888865543
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-09 Score=97.05 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=41.4
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCC
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
|.+.|.+|+||++|++.+.+. +.. .+.++.|.. ...+...+..+.+|||+|-. .+..+...+.+..
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~-~~~~t~g~~--~~~~~~~~~~~~i~D~~G~~-~~~~~~~~~~~~a 67 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPK-KVAPTVGFT--PTKLRLDKYEVCIFDLGGGA-NFRGIWVNYYAEA 67 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCc-cccCcccce--EEEEEECCEEEEEEECCCcH-HHHHHHHHHHcCC
Confidence 789999999999999999977 332 222222332 11233344568899999954 3555555544433
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-09 Score=103.26 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=34.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHh-----cCCCCeEEeechhhhhhhCCCCHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA-----NDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~-----~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..+|+++|+||+|...........+++.+.+.. ...+.+++++||++|.|+.+|.+.
T Consensus 119 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~ 180 (192)
T cd01889 119 LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKD 180 (192)
T ss_pred cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHH
Confidence 368999999999642111111223334332221 123578999999999999887443
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-09 Score=92.78 Aligned_cols=161 Identities=15% Similarity=0.215 Sum_probs=114.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..++.+.|---+||++|.-...+..|.....+..... ....-.++-....+.+|||+| ++++..+-..|+++....+.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAG-QErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAG-QERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccc-hHhhhccCceEEeCCCceEE
Confidence 3578899999999999999999998877766543222 111112223345688999999 66788888888887766655
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +|++.|.+.+|..|..+ |+.+.- ....+++|.||+|. -+..
T Consensus 92 Vy----------------DITDrdSFqKVKnWV~E------------------lr~mlG-nei~l~IVGNKiDL--EeeR 134 (218)
T KOG0088|consen 92 VY----------------DITDRDSFQKVKNWVLE------------------LRTMLG-NEIELLIVGNKIDL--EEER 134 (218)
T ss_pred EE----------------eccchHHHHHHHHHHHH------------------HHHHhC-CeeEEEEecCcccH--HHhh
Confidence 55 67888999999888765 222222 35678899999954 3334
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
....++...|++.. ++..+.+||+.+.||.+|.+...+..
T Consensus 135 ~Vt~qeAe~YAesv--GA~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 135 QVTRQEAEAYAESV--GALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hhhHHHHHHHHHhh--chhheecccccccCHHHHHHHHHHHH
Confidence 44566666777665 77789999999999999876654443
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.9e-09 Score=107.39 Aligned_cols=175 Identities=17% Similarity=0.145 Sum_probs=102.9
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHH----HHHHHHHHh
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKE----INKIEKLVQ 314 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~----~~~l~~~~~ 314 (561)
...++.....++|.+|+|||+++|-++...++..+++|++-.. -+-.+.+.-..++++||||+-.. .+.++...+
T Consensus 163 sIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL-~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLL-LVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchh-hhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 3446778899999999999999999999999999998854221 00011222246789999998321 122222211
Q ss_pred hCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecC
Q psy17315 315 RGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNL 393 (561)
Q Consensus 315 ~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK 393 (561)
. . .+|++ .+++.+.|..+.++ -...++.++++.+.. ..+||+|+|+||
T Consensus 242 T-----------A-----------LAHLr--aaVLYfmDLSe~CG-------ySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 242 T-----------A-----------LAHLR--SAVLYFMDLSEMCG-------YSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred H-----------H-----------HHHhh--hhheeeeechhhhC-------CCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 0 0 01222 23333334333321 122345566665542 268999999999
Q ss_pred Chhhhhhhc-cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 394 SAKDYIKKK-NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 394 ~D~d~~~~~-~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
+|.--.++- ++..+-+....+. .+.+++.+|+.++.|+.++..+.....+..
T Consensus 291 ~D~m~~edL~~~~~~ll~~~~~~--~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 291 IDAMRPEDLDQKNQELLQTIIDD--GNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred ccccCccccCHHHHHHHHHHHhc--cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 965211111 1111222222222 258899999999999999988777776654
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-08 Score=96.00 Aligned_cols=153 Identities=13% Similarity=0.073 Sum_probs=82.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
....++.+.|.+|+|||+|++.+.+..+. .+.+ |..+. ..+...+.++.+|||+|..+ ...+...+......+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~~~~---t~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~ad~i 88 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--QHQP---TQHPTSEELAIGNIKFTTFDLGGHQQ-ARRLWKDYFPEVNGI 88 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--ccCC---ccccceEEEEECCEEEEEEECCCCHH-HHHHHHHHhCCCCEE
Confidence 34578999999999999999999987443 2211 11121 12223345788999999654 344444443333222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+.+.+......+.. ++. .....++|+++|+||+|...
T Consensus 89 i~vv----------------D~~~~~~~~~~~~~l~~-----------------l~~-~~~~~~~piliv~NK~Dl~~-- 132 (184)
T smart00178 89 VYLV----------------DAYDKERFAESKRELDA-----------------LLS-DEELATVPFLILGNKIDAPY-- 132 (184)
T ss_pred EEEE----------------ECCcHHHHHHHHHHHHH-----------------HHc-ChhhcCCCEEEEEeCccccC--
Confidence 1111 11111222211111111 111 11124789999999996421
Q ss_pred hccchHHHHHHHHHhcC----------CCCeEEeechhhhhhhCCCCH
Q psy17315 401 KKNKWLPKIKEWVDAND----------PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~----------~~~~vi~iSA~~~~gl~~L~~ 438 (561)
....+++.+.+.... ....++++||++|.|+.++.+
T Consensus 133 --~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~ 178 (184)
T smart00178 133 --AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFK 178 (184)
T ss_pred --CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHH
Confidence 122344544432110 134599999999999877643
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.1e-09 Score=91.99 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=100.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cc--hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RD--IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~--~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|..|+|||+|+-.++...|....-..+ | +|-. .. +.-....+.+|||+| +++++.+...++++++.+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tI-G-vDFkvk~m~vdg~~~KlaiWDTAG-qErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTI-G-VDFKVKVMQVDGKRLKLAIWDTAG-QERFRTLTPSYYRGAQGI 87 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCcee-e-eeEEEEEEEEcCceEEEEEEeccc-hHhhhccCHhHhccCcee
Confidence 4689999999999999999999987654432211 1 1111 11 222334678899999 677999999999988887
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+-.+ +++..+.+..+-.|+.+ +..+.-..+.-.++|.||+|....
T Consensus 88 IlVY----------------DVT~Rdtf~kLd~W~~E------------------ld~Ystn~diikmlVgNKiDkes~- 132 (209)
T KOG0080|consen 88 ILVY----------------DVTSRDTFVKLDIWLKE------------------LDLYSTNPDIIKMLVGNKIDKESE- 132 (209)
T ss_pred EEEE----------------EccchhhHHhHHHHHHH------------------HHhhcCCccHhHhhhcccccchhc-
Confidence 6665 55666777777566554 111211123445679999965421
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....++=.++++.+ ..-++.+||++..|+....++..
T Consensus 133 -R~V~reEG~kfAr~h--~~LFiE~SAkt~~~V~~~Feelv 170 (209)
T KOG0080|consen 133 -RVVDREEGLKFARKH--RCLFIECSAKTRENVQCCFEELV 170 (209)
T ss_pred -ccccHHHHHHHHHhh--CcEEEEcchhhhccHHHHHHHHH
Confidence 111222222344443 56789999999999776655443
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-08 Score=97.98 Aligned_cols=150 Identities=19% Similarity=0.089 Sum_probs=82.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccC--------------CCcccccCcc--------------------------cc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAEN--------------FPFCTIDPNE--------------------------NN 137 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~--------------~~~~T~~~~~--------------------------~~ 137 (561)
+|+++|.+++|||||+++|+......+. .-|.|..... ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4899999999999999999853211000 0122211000 00
Q ss_pred ccCCeEEEEeCCCcccCCcccccccccccccc--ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--
Q psy17315 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI--SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-- 213 (561)
Q Consensus 138 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i--~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-- 213 (561)
..+..+.++||||...... .....+ +.+|++++|+|+...- ...-..+...+.....+
T Consensus 81 ~~~~~i~liDtpG~~~~~~-------~~~~~~~~~~~D~~llVvda~~g~-----------~~~d~~~l~~l~~~~ip~i 142 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLK-------TTLFGLTGYAPDYAMLVVAANAGI-----------IGMTKEHLGLALALNIPVF 142 (224)
T ss_pred eCCcEEEEEECCCcHHHHH-------HHHHhhcccCCCEEEEEEECCCCC-----------cHHHHHHHHHHHHcCCCEE
Confidence 1234689999999753221 122223 3689999999875210 01111122233333333
Q ss_pred -hhccccccCcCCCCCccHHHHHHHhhh-------------------------cCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 214 -VDAKADSKKKMGPKKTDEGEKKMLLGR-------------------------VGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 214 -v~NK~D~~~~~~~~~~~~~~l~~l~~~-------------------------~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+.||+|+.+...... ....+...+.. ....+.+.+|+.+|.|+..|...|..
T Consensus 143 vvvNK~D~~~~~~~~~-~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 143 VVVTKIDLAPANILQE-TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEEECccccCHHHHHH-HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 899999864322111 11122222221 11236788999999999999988754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-08 Score=95.62 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=82.3
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
....++.+.|.+|+|||+|++.+.+..+. .+.+ |..+. ..+.+.+..+.+|||||... ...+...+.+....+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~~~---T~~~~~~~i~~~~~~~~l~D~~G~~~-~~~~~~~~~~~ad~i 90 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QHVP---TLHPTSEELTIGNIKFKTFDLGGHEQ-ARRLWKDYFPEVDGI 90 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc--ccCC---ccCcceEEEEECCEEEEEEECCCCHH-HHHHHHHHhccCCEE
Confidence 34578999999999999999999987542 2222 22121 12333345678999999533 444443433333222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+...+.....++.+ .+. .......|+++++||+|. ..
T Consensus 91 ilV~----------------D~~~~~s~~~~~~~~~~-----------------i~~-~~~~~~~pvivv~NK~Dl--~~ 134 (190)
T cd00879 91 VFLV----------------DAADPERFQESKEELDS-----------------LLS-DEELANVPFLILGNKIDL--PG 134 (190)
T ss_pred EEEE----------------ECCcHHHHHHHHHHHHH-----------------HHc-CccccCCCEEEEEeCCCC--CC
Confidence 1111 11111111111111111 111 111246899999999954 21
Q ss_pred hccchHHHHHHHHHhcC--------------CCCeEEeechhhhhhhCCCCH
Q psy17315 401 KKNKWLPKIKEWVDAND--------------PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~--------------~~~~vi~iSA~~~~gl~~L~~ 438 (561)
....+++++++.... ...+++++||++|.|+.++.+
T Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~ 184 (190)
T cd00879 135 --AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR 184 (190)
T ss_pred --CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHH
Confidence 222345555543210 124689999999999877744
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-09 Score=95.03 Aligned_cols=150 Identities=18% Similarity=0.119 Sum_probs=80.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+|||+|++++++..+ ....++.+.. ...+......+.+|||||.++ +..+...+.....-++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~~i~v~- 74 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTIPTIGFN--VETVEYKNVSFTVWDVGGQDK-IRPLWKHYYENTNGIIFVV- 74 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcCcc--eEEEEECCEEEEEEECCCChh-hHHHHHHHhccCCEEEEEE-
Confidence 378999999999999999998852 2222222221 112223345688999999654 3444433332222221111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+....+.+..+..++.. ++. .......|+++|+||+|... ...
T Consensus 75 ---------------D~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~piiiv~nK~D~~~----~~~ 117 (158)
T cd00878 75 ---------------DSSDRERIEEAKEELHK-----------------LLN-EEELKGVPLLIFANKQDLPG----ALS 117 (158)
T ss_pred ---------------ECCCHHHHHHHHHHHHH-----------------HHh-CcccCCCcEEEEeeccCCcc----ccC
Confidence 11222222222222211 111 11125789999999996432 112
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+++.+.+... ....+++++||++|.|++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 118 VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 33344333221 1246799999999999877643
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-08 Score=107.42 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCccc------------------c----------ccC
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPNEN------------------N----------KVP 140 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~~~------------------~----------~~~ 140 (561)
+....++|+++|..++|||||+.+|++... .-.-..|.|.+.... . ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 345568999999999999999999987421 111123444432110 0 002
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~N 216 (561)
..+.++||||.. .+...++..+..+|++++|+|++... ......+.+.. +.... .+ ++|
T Consensus 85 ~~i~liDtPG~~-------~f~~~~~~~~~~~D~~llVVDa~~~~------~~~~t~~~l~~----l~~~~i~~iiVVlN 147 (411)
T PRK04000 85 RRVSFVDAPGHE-------TLMATMLSGAALMDGAILVIAANEPC------PQPQTKEHLMA----LDIIGIKNIVIVQN 147 (411)
T ss_pred cEEEEEECCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCC------CChhHHHHHHH----HHHcCCCcEEEEEE
Confidence 468999999953 22334556667889999999986310 01111122221 22222 12 789
Q ss_pred cccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 217 KADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 217 K~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
|+|+.+...... ....+..+... ....+.+.+|+++|.|+.+|+++|.+..
T Consensus 148 K~Dl~~~~~~~~-~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 148 KIDLVSKERALE-NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred eeccccchhHHH-HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 999974321100 01122222221 1235679999999999999999998764
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-08 Score=87.54 Aligned_cols=152 Identities=16% Similarity=0.268 Sum_probs=104.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh----h------hHhhhcccHHHHHHHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI----I------NEELRLKDVEHIEKEINKIEKLVQ 314 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~----~------~~el~l~Dt~Gi~~~~~~l~~~~~ 314 (561)
.+..+.|..-+|||+|+..+++..|.. .+ ||..++++ + ...|.+|||+| ++++..+.+.++
T Consensus 9 frlivigdstvgkssll~~ft~gkfae--ls------dptvgvdffarlie~~pg~riklqlwdtag-qerfrsitksyy 79 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAE--LS------DPTVGVDFFARLIELRPGYRIKLQLWDTAG-QERFRSITKSYY 79 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccc--cC------CCccchHHHHHHHhcCCCcEEEEEEeeccc-hHHHHHHHHHHh
Confidence 568899999999999999999986532 22 33322221 1 13578999999 677888998887
Q ss_pred hCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCce-EEEecC
Q psy17315 315 RGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ-IYLVNL 393 (561)
Q Consensus 315 ~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~-iiv~NK 393 (561)
+..-.....+ +|++....+||.+|+.++ . +.... ..|++ ++|..|
T Consensus 80 rnsvgvllvy----------------ditnr~sfehv~~w~~ea--~--------------m~~q~--P~k~VFlLVGhK 125 (213)
T KOG0091|consen 80 RNSVGVLLVY----------------DITNRESFEHVENWVKEA--A--------------MATQG--PDKVVFLLVGHK 125 (213)
T ss_pred hcccceEEEE----------------eccchhhHHHHHHHHHHH--H--------------HhcCC--CCeeEEEEeccc
Confidence 6554443333 567778899999998762 0 11111 35664 579999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
+|.+ .......++.++++..+ +..+|.+||++|.|+++......++
T Consensus 126 sDL~--SqRqVt~EEaEklAa~h--gM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 126 SDLQ--SQRQVTAEEAEKLAASH--GMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred cchh--hhccccHHHHHHHHHhc--CceEEEecccCCCcHHHHHHHHHHH
Confidence 9554 44555667776666665 7889999999999988765554444
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-09 Score=123.07 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=87.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|+|.+++.....+++ +|++ ++.+. +...+.++.++||||+++... ..... ...+.+..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~---pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~-~~~~~-s~~E~i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNW---AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT-ISSQT-SLDEQIAC 78 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCC---CCceEeeEEEEEEcCceEEEEEECCCcccccc-ccccc-cHHHHHHH
Confidence 479999999999999999999986544444 5554 44443 344556899999999754210 00000 00000000
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++. .+++|++..|+|.. . .+........... .++|+++|+||+|... +
T Consensus 79 ~~l~---------------~~~aD~vI~VvDat-----------~-ler~l~l~~ql~e-~giPvIvVlNK~Dl~~---~ 127 (772)
T PRK09554 79 HYIL---------------SGDADLLINVVDAS-----------N-LERNLYLTLQLLE-LGIPCIVALNMLDIAE---K 127 (772)
T ss_pred HHHh---------------ccCCCEEEEEecCC-----------c-chhhHHHHHHHHH-cCCCEEEEEEchhhhh---c
Confidence 0000 01113333333210 1 1112222222222 4799999999996532 1
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......++++.+.. +.|++++||+++.|++++.+...+
T Consensus 128 ~~i~id~~~L~~~L--G~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 128 QNIRIDIDALSARL--GCPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred cCcHHHHHHHHHHh--CCCEEEEEeecCCCHHHHHHHHHH
Confidence 12222333333333 689999999999999988665443
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=108.93 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc----------------cCCCcccccCccc--cccCCeEEEEeCCCcccCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA----------------ENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEG 158 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~----------------~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~ 158 (561)
.+|+++|.+++|||||+++|+...... ....|.|...... .+.+..+.+|||||......
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~-- 83 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG-- 83 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH--
Confidence 479999999999999999998643110 1123444432221 22345799999999754332
Q ss_pred cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHH
Q psy17315 159 QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 159 ~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
.....++.+|++++|+|+.... .... ......+.....+ +.||+|..... +.. ....+.
T Consensus 84 -----~v~~~l~~aDg~ILVVDa~~G~-------~~qt----~~~l~~a~~~gip~IVviNKiD~~~a~-~~~-vl~ei~ 145 (607)
T PRK10218 84 -----EVERVMSMVDSVLLVVDAFDGP-------MPQT----RFVTKKAFAYGLKPIVVINKVDRPGAR-PDW-VVDQVF 145 (607)
T ss_pred -----HHHHHHHhCCEEEEEEecccCc-------cHHH----HHHHHHHHHcCCCEEEEEECcCCCCCc-hhH-HHHHHH
Confidence 2344568999999999886310 0000 1111122223333 89999987432 111 112222
Q ss_pred HHhhh------cCCCcEEEEEccCCC----------CHHHHHHHHHhhccC
Q psy17315 236 MLLGR------VGTNLKVGIVGVPNV----------GKSTFFNVLTKRAFE 270 (561)
Q Consensus 236 ~l~~~------~~~~~~i~isg~~~~----------Gks~l~~~l~~~~~~ 270 (561)
++... ....+.+.+||.+|. |...|++.+.+..+.
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 22211 123678999999998 688999999887643
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-08 Score=96.15 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=79.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc---chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR---DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~---~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
++.+.|.+|+||++|+..+.+..+.....+.. .+... .+......+.+|||+|.++ +..+...+.+....++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~a~~~i~ 77 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA---FDNFSVVVLVDGKPVRLQLCDTAGQDE-FDKLRPLCYPDTDVFLL 77 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeeeeEEEEECCEEEEEEEEECCCChh-hccccccccCCCcEEEE
Confidence 58899999999999999998766544322211 11111 1111123578899999533 44333332222222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK- 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~- 400 (561)
.+ ++.+.+.+..+. .|+.. +... ..+.|+++|+||+|.....
T Consensus 78 v~----------------d~~~~~sf~~~~~~~~~~------------------~~~~--~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 78 CF----------------SVVNPSSFQNISEKWIPE------------------IRKH--NPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred EE----------------ECCCHHHHHHHHHHHHHH------------------HHhh--CCCCCEEEEeeChhhccChh
Confidence 11 122223332221 11111 1111 1368999999999642110
Q ss_pred ---------hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 401 ---------KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 401 ---------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
......++..++++.. ...+++++||++|.|+.++.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~lf~ 167 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKI-GACEYIECSALTQKNLKEVFD 167 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHH
Confidence 0111223344444443 123799999999999888744
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=93.07 Aligned_cols=154 Identities=16% Similarity=0.266 Sum_probs=95.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|..|+||++|++.+.+..+.....++. |. +.. ..+ ......+.+||++|.+ .+..+.....+....++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~~~~~~~~~~~~~ii 77 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTI-GI-DSYSKEVSIDGKPVNLEIWDTSGQE-RFDSLRDIFYRNSDAIII 77 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTS-SE-EEEEEEEEETTEEEEEEEEEETTSG-GGHHHHHHHHTTESEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccc-cc-ccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 58899999999999999999987654443332 11 111 112 1222458899999943 455554444433333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..|+.. +..... ...|+++|.||.|... ..
T Consensus 78 ~f----------------d~~~~~S~~~~~~~~~~------------------i~~~~~-~~~~iivvg~K~D~~~--~~ 120 (162)
T PF00071_consen 78 VF----------------DVTDEESFENLKKWLEE------------------IQKYKP-EDIPIIVVGNKSDLSD--ER 120 (162)
T ss_dssp EE----------------ETTBHHHHHTHHHHHHH------------------HHHHST-TTSEEEEEEETTTGGG--GS
T ss_pred cc----------------ccccccccccccccccc------------------cccccc-ccccceeeeccccccc--cc
Confidence 22 34555676666666543 222221 3589999999995432 23
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....++.++++... +.+++.+||+++.|+.++.....
T Consensus 121 ~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 121 EVSVEEAQEFAKEL--GVPYFEVSAKNGENVKEIFQELI 157 (162)
T ss_dssp SSCHHHHHHHHHHT--TSEEEEEBTTTTTTHHHHHHHHH
T ss_pred cchhhHHHHHHHHh--CCEEEEEECCCCCCHHHHHHHHH
Confidence 33455666777665 58999999999999877654433
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-09 Score=96.60 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=37.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi 302 (561)
..++.+.|.+|+|||+|++++.+..|....+.++.+..-....+...+ ..+.+||++|-
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~ 64 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED 64 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCc
Confidence 457999999999999999999998766233333222110011122222 35778999994
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-08 Score=108.55 Aligned_cols=150 Identities=18% Similarity=0.154 Sum_probs=90.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc---------------cCCCcccccCccc--ccc-----CCeEEEEeCCCcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA---------------ENFPFCTIDPNEN--NKV-----PAFLNVVDIAGLVKG 154 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~---------------~~~~~~T~~~~~~--~~~-----~~~i~l~DtpG~~~~ 154 (561)
.+++++|..++|||||+.+|......+ ....|.|...... .+. ...+.||||||....
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 479999999999999999997532110 1123555443221 111 246899999999754
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccH
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~ 231 (561)
.. .....++.||++++|+|++... .......+.. +.....+ ++||+|+.... ..
T Consensus 88 ~~-------~v~~sl~~aD~aILVVDas~gv-------~~qt~~~~~~----~~~~~lpiIvViNKiDl~~a~-----~~ 144 (600)
T PRK05433 88 SY-------EVSRSLAACEGALLVVDASQGV-------EAQTLANVYL----ALENDLEIIPVLNKIDLPAAD-----PE 144 (600)
T ss_pred HH-------HHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHH----HHHCCCCEEEEEECCCCCccc-----HH
Confidence 32 1234567899999999986321 0011111111 1111222 99999986321 11
Q ss_pred HHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 232 GEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 232 ~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.....+.... .....+.+||++|.|+..|+++|.+..+
T Consensus 145 ~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 145 RVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1122222222 2234799999999999999999988754
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=97.53 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
...+..|+++|.||+|||||+|+|.+.. ..++...|+. ... .....++.++||||.. ...+..++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i~--~~~~~~i~~vDtPg~~----------~~~l~~ak 102 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TVV--TGKKRRLTFIECPNDI----------NAMIDIAK 102 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EEE--ecCCceEEEEeCCchH----------HHHHHHHH
Confidence 3456789999999999999999998763 2233334421 111 1235678999999854 23345568
Q ss_pred cCCEEEEEeccc
Q psy17315 171 ACDAIFHLCKEK 182 (561)
Q Consensus 171 ~~D~il~VvD~~ 182 (561)
.+|++++|+|++
T Consensus 103 ~aDvVllviDa~ 114 (225)
T cd01882 103 VADLVLLLIDAS 114 (225)
T ss_pred hcCEEEEEEecC
Confidence 899999999875
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-08 Score=99.24 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcC----C-C-----------cccCCCc---ccccCccc------cc----cCCe
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKS----S-A-----------AAENFPF---CTIDPNEN------NK----VPAF 142 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~----~-~-----------~~~~~~~---~T~~~~~~------~~----~~~~ 142 (561)
|....+.+|++|.-|+|||||||++++. . . -+++.+| +|.+|... .. ....
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 4456688999999999999999999987 4 3 4788899 88887652 11 1257
Q ss_pred EEEEeCCCcccCCccccccccc----------------------cccccc-cCCEEEEEe-cccccchhhhccchhhHhh
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNA----------------------FLSHIS-ACDAIFHLC-KEKLRNIFFISLNTITIWR 198 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~----------------------~l~~i~-~~D~il~Vv-D~~~~~~~~~~~~~~~~~~ 198 (561)
+.++||+|+.-....|..-... ....+. .+|+.++|. |++..++ +......
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI-----~Re~y~~ 167 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDI-----PREDYVE 167 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccc-----ccccchH
Confidence 9999999997543322221222 123455 789998888 7752221 1111122
Q ss_pred hHHHHHHHHHHhcch---hhccccc
Q psy17315 199 NLKLLETRIRDLRRS---VDAKADS 220 (561)
Q Consensus 199 ~~~~l~~~l~~~~~~---v~NK~D~ 220 (561)
.-..+-++|.+..++ +.||+|-
T Consensus 168 aEe~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 168 AEERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHHHHhcCCCEEEEEECcCC
Confidence 223344566666666 8999884
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=94.11 Aligned_cols=57 Identities=37% Similarity=0.358 Sum_probs=36.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~ 303 (561)
.++.+.|.+|+|||+|++.+.+..+.....+.+ +.. -...+.. ....+.+|||+|.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FEN-YVADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ccc-eEEEEEECCEEEEEEEEeCCCch
Confidence 468999999999999999999876544332221 111 0011222 22367899999954
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-08 Score=109.69 Aligned_cols=150 Identities=14% Similarity=0.026 Sum_probs=83.2
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCCCccc-----------CCCcc----------------------cccCccc--
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAE-----------NFPFC----------------------TIDPNEN-- 136 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~-----------~~~~~----------------------T~~~~~~-- 136 (561)
+....++|+++|.+++|||||+++|......+. ..+|+ |.+....
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 345568999999999999999999975431110 11333 3332211
Q ss_pred cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch--
Q psy17315 137 NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS-- 213 (561)
Q Consensus 137 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-- 213 (561)
.....++.|+||||... +.......+..+|++++|+|+...- .....+.+. .+..+. ++
T Consensus 103 ~~~~~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~-------~~qt~~~~~----l~~~lg~~~iI 164 (474)
T PRK05124 103 STEKRKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGV-------LDQTRRHSF----IATLLGIKHLV 164 (474)
T ss_pred ccCCcEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCc-------cccchHHHH----HHHHhCCCceE
Confidence 12345799999999532 2222334468999999999975310 000011111 111222 22
Q ss_pred -hhccccccCcCCCC-CccHHHHHHHhhhc---CCCcEEEEEccCCCCHHH
Q psy17315 214 -VDAKADSKKKMGPK-KTDEGEKKMLLGRV---GTNLKVGIVGVPNVGKST 259 (561)
Q Consensus 214 -v~NK~D~~~~~~~~-~~~~~~l~~l~~~~---~~~~~i~isg~~~~Gks~ 259 (561)
++||+|+....... ......+..+.... ...+.+++||++|.|+..
T Consensus 165 vvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 165 VAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred EEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence 89999997422100 00111122222222 246789999999999864
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-08 Score=94.42 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=42.7
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
|.+.|.+|+||++|++.+.+..+..... ++.|. +. ..+...+..+.+|||+|.. .+..+...+.++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~-pt~g~-~~-~~i~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV-PTTGF-NS-VAIPTQDAIMELLEIGGSQ-NLRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc-ccCCc-ce-EEEeeCCeEEEEEECCCCc-chhHHHHHHHhhCC
Confidence 6799999999999999999876543322 22232 11 1222334568899999953 35555555444443
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-08 Score=96.41 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=85.9
Q ss_pred EccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhh
Q psy17315 250 VGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSE 327 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~ 327 (561)
.|..|+||++|++.+....|.....+. .|. ..... .+......+.+|||+|- +.+..+...+.++...++..+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~T-ig~~~~~~~~~~~~~~~~l~iwDt~G~-e~~~~l~~~~~~~ad~~ilV~--- 75 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVAT-LGVEVHPLVFHTNRGPIRFNVWDTAGQ-EKFGGLRDGYYIQGQCAIIMF--- 75 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCc-eeEEEEEEEEEECCEEEEEEEEECCCc-hhhhhhhHHHhcCCCEEEEEE---
Confidence 478999999999999976554332222 221 11111 11112346889999995 446666666655544333322
Q ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHH
Q psy17315 328 VWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLP 407 (561)
Q Consensus 328 ~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~ 407 (561)
++.+.+.+..+..|..+ +.... ...|+++|+||+|.. . .....+
T Consensus 76 -------------D~t~~~S~~~i~~w~~~------------------i~~~~--~~~piilvgNK~Dl~--~-~~v~~~ 119 (200)
T smart00176 76 -------------DVTARVTYKNVPNWHRD------------------LVRVC--ENIPIVLCGNKVDVK--D-RKVKAK 119 (200)
T ss_pred -------------ECCChHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECcccc--c-ccCCHH
Confidence 33444555545444433 11111 368999999999642 1 111122
Q ss_pred HHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 408 KIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 408 ~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.+ ++.... +.+++.+||++|.|+.++.+...+.
T Consensus 120 ~~-~~~~~~--~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 120 SI-TFHRKK--NLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HH-HHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22 333332 5789999999999988876554443
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-08 Score=96.12 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=88.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.++|..|+||++|++.+.+..|.....+.+..... ..+.. ....|.+|||+|- +.++.+...+.+...-++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~--~~~~~~~~~v~L~iwDt~G~-e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT--ASFEIDKRRIELNMWDTSGS-SYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE--EEEEECCEEEEEEEEeCCCc-HHHHHHhHHhccCCCEEEE
Confidence 36899999999999999999988766544443321110 11222 2346888999994 4466666655544443333
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK- 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~- 401 (561)
.+ ++.+.+.+..+...... .+... ....|+|+|+||+|......
T Consensus 79 vf----------------dis~~~Sf~~i~~~w~~-----------------~~~~~--~~~~piiLVgnK~DL~~~~~~ 123 (222)
T cd04173 79 CF----------------DISRPETLDSVLKKWQG-----------------ETQEF--CPNAKVVLVGCKLDMRTDLAT 123 (222)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH-----------------HHHhh--CCCCCEEEEEECcccccchhh
Confidence 33 33444555444321111 01111 14689999999996421000
Q ss_pred -------c--cchHHHHHHHHHhcCCC-CeEEeechhhhhh-hCCCCHHH
Q psy17315 402 -------K--NKWLPKIKEWVDANDPG-ATIIPFSGVFEHQ-LVDMPDDE 440 (561)
Q Consensus 402 -------~--~~~~~~l~~~~~~~~~~-~~vi~iSA~~~~g-l~~L~~~~ 440 (561)
. ....++..++++.. + .+++.+||+++.+ +.++.+..
T Consensus 124 ~~~~~~~~~~pIs~e~g~~~ak~~--~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 124 LRELSKQRLIPVTHEQGTVLAKQV--GAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred hhhhhhccCCccCHHHHHHHHHHc--CCCEEEEcCCCcCCcCHHHHHHHH
Confidence 0 01123333444443 4 4799999998874 87775443
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-08 Score=102.92 Aligned_cols=85 Identities=22% Similarity=0.300 Sum_probs=57.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccc---cccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGL---GNAFLS 167 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~---~~~~l~ 167 (561)
...++|+++|.+||||||++|+|+|.. ..++.++++|..+... ...+..+.+|||||+.......... ...++.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 345799999999999999999999988 5667776665544322 2245689999999998643211111 111111
Q ss_pred ccccCCEEEEEe
Q psy17315 168 HISACDAIFHLC 179 (561)
Q Consensus 168 ~i~~~D~il~Vv 179 (561)
. ...|++++|.
T Consensus 116 ~-~g~DvVLyV~ 126 (313)
T TIGR00991 116 G-KTIDVLLYVD 126 (313)
T ss_pred c-CCCCEEEEEe
Confidence 1 3689999995
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-08 Score=94.16 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=78.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+|||+|++.+.+..+.....+...........+......+.+|||+|-. .+..+.....+...-.+..+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~~~~~~~~~~~~ilv~- 79 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE-DYDRLRPLSYPMTDVFLICF- 79 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc-cccccccccCCCCCEEEEEE-
Confidence 6899999999999999999988654332222111100000111112346789999943 23332222211111111111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh----
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK---- 401 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~---- 401 (561)
++.+.+.+..+... | ...+... ....|+++|+||+|......
T Consensus 80 ---------------~~~~~~s~~~~~~~-------------~----~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~ 125 (174)
T cd04135 80 ---------------SVVNPASFQNVKEE-------------W----VPELKEY--APNVPYLLVGTQIDLRDDPKTLAR 125 (174)
T ss_pred ---------------ECCCHHHHHHHHHH-------------H----HHHHHhh--CCCCCEEEEeEchhhhcChhhHHH
Confidence 11222222212110 0 1112222 25799999999996421100
Q ss_pred ------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 ------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+...+++... ...+++.+||++|.|++++.++.
T Consensus 126 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 126 LNDMKEKPVTVEQGQKLAKEI-GAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred HhhccCCCCCHHHHHHHHHHc-CCCEEEEecCCcCCCHHHHHHHH
Confidence 011122333444433 12478999999999998885544
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-10 Score=100.97 Aligned_cols=54 Identities=43% Similarity=0.485 Sum_probs=34.3
Q ss_pred EEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHH
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~ 304 (561)
+.|.+|+|||+|++.+.+.... ..+..++++ +... .....+..+.+|||||+.+
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~ 57 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDA--IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEP 57 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEE--eecCCCCceeCceeEEEEECCeEEEEEECCCCCC
Confidence 6799999999999999986321 122223333 2111 2223345688999999754
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.9e-08 Score=100.01 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=61.5
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-hhhccc
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-SVDAKA 218 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~NK~ 218 (561)
+..+.|+||+|+..... ..+..||++++|++... ...+........+... .|+||+
T Consensus 148 g~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~-------------gd~iq~~k~gi~E~aDIiVVNKa 204 (332)
T PRK09435 148 GYDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGA-------------GDELQGIKKGIMELADLIVINKA 204 (332)
T ss_pred CCCEEEEECCCCccchh----------HHHHhCCEEEEEecCCc-------------hHHHHHHHhhhhhhhheEEeehh
Confidence 34689999999973221 12456899999985221 1112222221222222 389999
Q ss_pred cccCcCCCCCccHHHHHHHhhhc------CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 219 DSKKKMGPKKTDEGEKKMLLGRV------GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 219 D~~~~~~~~~~~~~~l~~l~~~~------~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
|+.+..+... ....+...+... ...+.+.+|+.++.|++.|++.+.+..
T Consensus 205 Dl~~~~~a~~-~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 205 DGDNKTAARR-AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred cccchhHHHH-HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9885432111 111222222221 224789999999999999999998863
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-08 Score=107.25 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=82.8
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCC----------------cccCCCcccccCccc--cccCCeEEEEeCCCcccC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSA----------------AAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~----------------~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~ 154 (561)
....++++++|.+++|||||+++|++... ......|.|.+.... ...+..+.++||||....
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45568899999999999999999985321 112234555543221 123457899999997532
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
. ......+..+|++++|+|+...- .....+.+ ..+..+..+ +.||+|+..........
T Consensus 158 ~-------~~~~~g~~~aD~ailVVda~~G~-------~~qt~e~~----~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i 219 (478)
T PLN03126 158 V-------KNMITGAAQMDGAILVVSGADGP-------MPQTKEHI----LLAKQVGVPNMVVFLNKQDQVDDEELLELV 219 (478)
T ss_pred H-------HHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHH----HHHHHcCCCeEEEEEecccccCHHHHHHHH
Confidence 2 23345567899999999875210 01111111 122223332 69999987421111111
Q ss_pred HHHHHHHhhhc----CCCcEEEEEccCCC
Q psy17315 231 EGEKKMLLGRV----GTNLKVGIVGVPNV 255 (561)
Q Consensus 231 ~~~l~~l~~~~----~~~~~i~isg~~~~ 255 (561)
..++..++... ...+.+++||.+|.
T Consensus 220 ~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 220 ELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 12333443332 24567889998874
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=87.46 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCc----ccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAA----AENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~----~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
||.++|.+|||||||+++|.+.... .....+.+...... ......+.++|++|....... ....+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~~~ 73 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ-------HQFFLKK 73 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT-------SHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc-------ccchhhc
Confidence 6899999999999999999987733 11222222211111 111224789999998532221 1112688
Q ss_pred CCEEEEEeccc
Q psy17315 172 CDAIFHLCKEK 182 (561)
Q Consensus 172 ~D~il~VvD~~ 182 (561)
+|++++|+|.+
T Consensus 74 ~d~~ilv~D~s 84 (119)
T PF08477_consen 74 ADAVILVYDLS 84 (119)
T ss_dssp SCEEEEEEECC
T ss_pred CcEEEEEEcCC
Confidence 99999999876
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-08 Score=93.37 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=37.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
+|.+.|.+|+|||+|++++++..+.....+...........+......+.+|||||.++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 68899999999999999999986633333221111101111111234588999999643
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-08 Score=89.49 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=96.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc------cccCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
..|+.++|-.+||||.|+-+.+.+. .++.+ .|...-.+ ...+..+++|||.|.....+ + .-+.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs----v---~~sy 75 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS----V---TRSY 75 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH----H---HHHH
Confidence 3689999999999999999999876 33222 23222111 12234689999999865442 1 2344
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
.|.+-..|+|.|.+. ...++.++.+...++....+ ++||+|+..+.....+.-+.+.+-.+.
T Consensus 76 Yr~a~GalLVydit~----------r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-- 143 (216)
T KOG0098|consen 76 YRGAAGALLVYDITR----------RESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-- 143 (216)
T ss_pred hccCcceEEEEEccc----------hhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc--
Confidence 688888899998653 34566666555444444322 899999998876544333333333222
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.-.-.|+++++|+.+.|......
T Consensus 144 --ifmETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 144 --IFMETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred --eeehhhhhhhhhHHHHHHHHHHH
Confidence 23478999999999887766554
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-08 Score=93.47 Aligned_cols=144 Identities=18% Similarity=0.218 Sum_probs=75.8
Q ss_pred EEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccc-cchhhhhHhhhcccHHHHHHHHH-----HHHHHHhhCCcccc
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPV-RDIEIINEELRLKDVEHIEKEIN-----KIEKLVQRGDKKLK 321 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~~~~-----~l~~~~~~~~~~~~ 321 (561)
+.|.+|+|||+|++.+++..+..+.. ++++ +.. ..+.+.+..+.+|||||...... .+...+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~----- 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNW---PGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG----- 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCC---CCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-----
Confidence 46999999999999999875433333 2332 222 22334445789999999743211 111111110
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..++++..|++... .+.....+..... ..+|+++|+||+|. ..
T Consensus 73 ---------------------~~~d~vi~v~d~~~------------~~~~~~~~~~~~~-~~~~~iiv~NK~Dl--~~- 115 (158)
T cd01879 73 ---------------------EKPDLIVNVVDATN------------LERNLYLTLQLLE-LGLPVVVALNMIDE--AE- 115 (158)
T ss_pred ---------------------CCCcEEEEEeeCCc------------chhHHHHHHHHHH-cCCCEEEEEehhhh--cc-
Confidence 01122222222100 0111122222222 47999999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.........++.... +.+++++||.++.|+.++.+.
T Consensus 116 ~~~~~~~~~~~~~~~--~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 116 KRGIKIDLDKLSELL--GVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred cccchhhHHHHHHhh--CCCeEEEEccCCCCHHHHHHH
Confidence 111112222333322 568999999999998877443
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-09 Score=99.28 Aligned_cols=149 Identities=27% Similarity=0.318 Sum_probs=78.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..+ ......++++ +... .+...+..+.+|||||+......+....... . .
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~---~-~ 75 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR--AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIER---A-R 75 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce--EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHH---H-H
Confidence 4789999999999999999998742 1222233443 2221 2233345788999999643211111100000 0 0
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.. ...++++..|.+.. ...+..+...+.. ...+|+++|+||+|. ....
T Consensus 76 ~~-----------------~~~~~~~v~v~d~~----------~~~~~~~~~~~~~---~~~~~vi~v~nK~D~--~~~~ 123 (157)
T cd04164 76 EA-----------------IEEADLVLFVIDAS----------RGLDEEDLEILEL---PADKPIIVVLNKSDL--LPDS 123 (157)
T ss_pred HH-----------------HhhCCEEEEEEECC----------CCCCHHHHHHHHh---hcCCCEEEEEEchhc--CCcc
Confidence 00 01112222221110 0123333333332 257999999999954 3211
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
. . .... ...+++++||+++.|+.++.+..
T Consensus 124 ~-~------~~~~--~~~~~~~~Sa~~~~~v~~l~~~l 152 (157)
T cd04164 124 E-L------LSLL--AGKPIIAISAKTGEGLDELKEAL 152 (157)
T ss_pred c-c------cccc--CCCceEEEECCCCCCHHHHHHHH
Confidence 1 1 1111 25789999999999988875543
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-09 Score=119.15 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=80.1
Q ss_pred ccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHH-----HHHHHHhhCCccccch
Q psy17315 251 GVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEIN-----KIEKLVQRGDKKLKPE 323 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~-----~l~~~~~~~~~~~~~~ 323 (561)
|.+|+|||+|+|.+++..+..+++ +|++ +... .+...+.++.+|||||.++... .+.+.+...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~---pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~------- 70 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNW---PGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLN------- 70 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCC---CCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhh-------
Confidence 789999999999999986544444 4443 3332 2334455789999999754211 011111000
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
..+|++..|.|.. . .+.......+... .++|+++|+||+|.. +. .
T Consensus 71 -------------------~~aDvvI~VvDat-----------~-ler~l~l~~ql~~-~~~PiIIVlNK~Dl~--~~-~ 115 (591)
T TIGR00437 71 -------------------EKPDLVVNVVDAS-----------N-LERNLYLTLQLLE-LGIPMILALNLVDEA--EK-K 115 (591)
T ss_pred -------------------cCCCEEEEEecCC-----------c-chhhHHHHHHHHh-cCCCEEEEEehhHHH--Hh-C
Confidence 0112222222210 0 1112222222222 479999999999653 21 1
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+++.+.. +.+++++||++|.|++++.+...+
T Consensus 116 ~i~~d~~~L~~~l--g~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 116 GIRIDEEKLEERL--GVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred CChhhHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHH
Confidence 1112233333332 678999999999999998776544
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-08 Score=93.15 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=78.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc--cchhh---hhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV--RDIEI---INEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~--~~~~~---~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+.+.+.|.+|+||++|++.+.+..+...... +++... ..+.. .+..+.+|||||... +..+........
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-~~~~~~~~~~~~-- 74 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAG---GITQHIGAFEVPAEVLKIPGITFIDTPGHEA-FTNMRARGASLT-- 74 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCC---CeEEeeccEEEecccCCcceEEEEeCCCcHH-HHHHHHHHHhhc--
Confidence 4689999999999999999998755443221 222111 11222 245788999999643 322222211111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
|++..|++... ....+....+..... ..+|+++|+||+|....
T Consensus 75 --------------------------d~il~v~d~~~----------~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 75 --------------------------DIAILVVAADD----------GVMPQTIEAIKLAKA-ANVPFIVALNKIDKPNA 117 (168)
T ss_pred --------------------------CEEEEEEECCC----------CccHHHHHHHHHHHH-cCCCEEEEEEceecccc
Confidence 22111111100 011122222322222 47899999999954211
Q ss_pred hhccchHHHHHHHHHh----cCCCCeEEeechhhhhhhCCCCHH
Q psy17315 400 KKKNKWLPKIKEWVDA----NDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~----~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
. .......+.++... .....+++++||+++.|+.+|.+.
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 118 N-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred c-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHH
Confidence 0 11122223222111 112367999999999998887544
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-08 Score=86.74 Aligned_cols=152 Identities=15% Similarity=0.222 Sum_probs=100.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc--ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV--NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~--dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
-.++.+.|..|+|||-|+..+.+..|.+.. +|+-|-- ..+..+-.....+++|||+| +++++.+.+.+++++...+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDds-sHTiGveFgSrIinVGgK~vKLQIWDTAG-QErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDS-SHTIGVEFGSRIVNVGGKTVKLQIWDTAG-QERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccc-cceeeeeecceeeeecCcEEEEEEeeccc-HHHHHHHHHHHhccccceE
Confidence 357899999999999999999999876653 3322210 01111111223688999999 6779999999998876655
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ +++..|....+-.|+.+ . +.+.. .+.-+|++.||.|.+..
T Consensus 87 LVY----------------D~TsrdsfnaLtnWL~D--a----------------R~lAs-~nIvviL~GnKkDL~~~-- 129 (214)
T KOG0086|consen 87 LVY----------------DITSRDSFNALTNWLTD--A----------------RTLAS-PNIVVILCGNKKDLDPE-- 129 (214)
T ss_pred EEE----------------eccchhhHHHHHHHHHH--H----------------HhhCC-CcEEEEEeCChhhcChh--
Confidence 444 55666887777777766 1 11111 34556788999965432
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCC
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDM 436 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L 436 (561)
.+....+..+++.+. ...+..+||++|.++++.
T Consensus 130 R~VtflEAs~FaqEn--el~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 130 REVTFLEASRFAQEN--ELMFLETSALTGENVEEA 162 (214)
T ss_pred hhhhHHHHHhhhccc--ceeeeeecccccccHHHH
Confidence 344444455555543 346788999999997654
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.8e-09 Score=98.05 Aligned_cols=152 Identities=17% Similarity=0.071 Sum_probs=79.4
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCccccc-------------CCc-cccc-cchhhhhHhhhcccHHHHHHHHHHHHH
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV-------------EGE-VNPV-RDIEIINEELRLKDVEHIEKEINKIEK 311 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~-------------~gt-~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~ 311 (561)
|.+.|.+|+|||+|+|.+++........... .+. .+.. ..+...+..+.+|||||..+. .....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-~~~~~ 80 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF-SSEVI 80 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-HHHHH
Confidence 7899999999999999999986443221111 111 1111 112223456889999997542 22222
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEe
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLV 391 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~ 391 (561)
...+.. +.+..+++... .......+.+..... ..+|+++|+
T Consensus 81 ~~~~~~----------------------------d~~i~v~d~~~----------~~~~~~~~~~~~~~~-~~~~i~iv~ 121 (189)
T cd00881 81 RGLSVS----------------------------DGAILVVDANE----------GVQPQTREHLRIARE-GGLPIIVAI 121 (189)
T ss_pred HHHHhc----------------------------CEEEEEEECCC----------CCcHHHHHHHHHHHH-CCCCeEEEE
Confidence 211111 22221211100 111222233332222 479999999
Q ss_pred cCChhhhhhhccchHHHHHHHHHhc------------CCCCeEEeechhhhhhhCCCCH
Q psy17315 392 NLSAKDYIKKKNKWLPKIKEWVDAN------------DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 392 NK~D~d~~~~~~~~~~~l~~~~~~~------------~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
||+|...........+.+++.++.. ....+++++||+.|.|+.++..
T Consensus 122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~ 180 (189)
T cd00881 122 NKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLE 180 (189)
T ss_pred ECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHH
Confidence 9995421011112233444444331 1257899999999999877743
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-08 Score=102.29 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=77.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC---cccC-CCccc--------------ccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA---AAEN-FPFCT--------------IDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~---~~~~-~~~~T--------------~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
+|+++|.+|+|||||+|+|.+... ..+. ..|+| ...... .+.+..+.++||||.....
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 389999999999999999975431 1111 12222 111111 1234578999999985322
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHH
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l 234 (561)
......++.+|.+++|+|++... .... ..+-+.+.....+ +.||+|.... .....+
T Consensus 79 -----~~~~~~l~~aD~~i~Vvd~~~g~-------~~~~----~~~~~~~~~~~~p~iivvNK~D~~~~-----~~~~~~ 137 (268)
T cd04170 79 -----GETRAALRAADAALVVVSAQSGV-------EVGT----EKLWEFADEAGIPRIIFINKMDRERA-----DFDKTL 137 (268)
T ss_pred -----HHHHHHHHHCCEEEEEEeCCCCC-------CHHH----HHHHHHHHHcCCCEEEEEECCccCCC-----CHHHHH
Confidence 22345568899999999876321 0000 1111122233333 8999998743 122334
Q ss_pred HHHhhhcCCC-cEEEEEccCCCCHHHHHHHHHh
Q psy17315 235 KMLLGRVGTN-LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 235 ~~l~~~~~~~-~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+...+... ..+.+....|.|...+.+.+..
T Consensus 138 ~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~ 170 (268)
T cd04170 138 AALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTE 170 (268)
T ss_pred HHHHHHhCCCeEEEEecccCCCceeEEEEcccC
Confidence 4444433221 2233334555555444444433
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.7e-08 Score=84.62 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=104.1
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
......+++..+|+.++||||++-.|.-.. ..+.+..|...+..+ +....+.++|..|...-+ .-+-.+.
T Consensus 12 ~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVt--ykN~kfNvwdvGGqd~iR-------plWrhYy 82 (180)
T KOG0071|consen 12 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT--YKNVKFNVWDVGGQDKIR-------PLWRHYY 82 (180)
T ss_pred HhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEE--eeeeEEeeeeccCchhhh-------HHHHhhc
Confidence 344557899999999999999999998655 555566666555443 334568899999875322 2233445
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----------hhccccccCcCCCCCccHHHHHHHh-
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----------VDAKADSKKKMGPKKTDEGEKKMLL- 238 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------v~NK~D~~~~~~~~~~~~~~l~~l~- 238 (561)
.....++||+|+..+ +.++.-+++|...... .+||.|++.++.+. ++.+.+
T Consensus 83 ~gtqglIFV~Dsa~~-------------dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pq-----ei~d~le 144 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADR-------------DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQ-----EIQDKLE 144 (180)
T ss_pred cCCceEEEEEeccch-------------hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHH-----HHHHHhc
Confidence 677889999998632 2333344444443332 79999999776653 223322
Q ss_pred ---hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 239 ---GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 239 ---~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.|...+.++.+|.|.-+-+.||.+..
T Consensus 145 Le~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 145 LERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 233578899999999999999999998763
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.7e-08 Score=107.42 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=90.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCc------cc----------CCCcccccCccc--cccCCeEEEEeCCCcccCCcccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAA------AE----------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~------~~----------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~ 159 (561)
.|+++|..++|||||+++|+..... +. ..-|.|...... .+.+..+.++||||.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 5999999999999999999853211 11 112444432211 2345679999999985332
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
......++.+|.+++|+|+... ..... ..+-..+.....+ +.||+|+..... . .....+.+
T Consensus 79 ---~ev~~~l~~aD~alLVVDa~~G-------~~~qT----~~~l~~a~~~~ip~IVviNKiD~~~a~~-~-~v~~ei~~ 142 (594)
T TIGR01394 79 ---GEVERVLGMVDGVLLLVDASEG-------PMPQT----RFVLKKALELGLKPIVVINKIDRPSARP-D-EVVDEVFD 142 (594)
T ss_pred ---HHHHHHHHhCCEEEEEEeCCCC-------CcHHH----HHHHHHHHHCCCCEEEEEECCCCCCcCH-H-HHHHHHHH
Confidence 2234556889999999988531 00011 1111122222223 899999864211 0 01122222
Q ss_pred Hhhhc------CCCcEEEEEccCCC----------CHHHHHHHHHhhccC
Q psy17315 237 LLGRV------GTNLKVGIVGVPNV----------GKSTFFNVLTKRAFE 270 (561)
Q Consensus 237 l~~~~------~~~~~i~isg~~~~----------Gks~l~~~l~~~~~~ 270 (561)
+.... ...+.+.+||++|. |+..|++.+.+..+.
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 22111 12467899999995 899999999987643
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-08 Score=94.16 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc----ccCCeEEEEeCCCcccCCccccccccccccccccC-
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC- 172 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~- 172 (561)
+|.++|.+|||||||+++|+...... .++.++....... ..+..+.++||||..... ..+...++.+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~-t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~-------~~~~~~~~~~~ 73 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS-TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR-------DKLLETLKNSA 73 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-ccCcEeecceEEEeecCCCCceEEEEECCCCHHHH-------HHHHHHHhccC
Confidence 58999999999999999999765211 1222211111101 124568999999975432 2344556777
Q ss_pred CEEEEEecccc
Q psy17315 173 DAIFHLCKEKL 183 (561)
Q Consensus 173 D~il~VvD~~~ 183 (561)
+++++|+|+..
T Consensus 74 ~~vV~VvD~~~ 84 (203)
T cd04105 74 KGIVFVVDSAT 84 (203)
T ss_pred CEEEEEEECcc
Confidence 99999999863
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=88.01 Aligned_cols=151 Identities=16% Similarity=0.109 Sum_probs=97.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCC-----CcccccCccccccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENF-----PFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~-----~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...||.++|-|+||||-|+.+.+......... -+.|+..... ......++|||+|..+.+.- .-.+.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd-~k~vkaqIWDTAGQERyrAi-------tSaYY 84 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD-GKTVKAQIWDTAGQERYRAI-------TSAYY 84 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeec-CcEEEEeeecccchhhhccc-------cchhh
Confidence 45789999999999999999999876332222 2333332221 11235799999998755421 12345
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
|.|-..++|.|.+. ...++++..+..+|++.... |+||+|+.+.......+...+..- ..
T Consensus 85 rgAvGAllVYDITr----------~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~----~~ 150 (222)
T KOG0087|consen 85 RGAVGALLVYDITR----------RQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK----EG 150 (222)
T ss_pred cccceeEEEEechh----------HHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh----cC
Confidence 88888999998752 23455666655566555433 899999997544433233233222 22
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
-.-+-+||+.++++...+..+...
T Consensus 151 l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 151 LFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred ceEEEecccccccHHHHHHHHHHH
Confidence 356889999999998888777665
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-09 Score=98.41 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=32.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..+|+++|+||+|..... .....+++.+.+. .+..+++++||++|.|+++|.+.
T Consensus 118 ~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gi~~l~~~ 171 (179)
T cd01890 118 NNLEIIPVINKIDLPSAD-PERVKQQIEDVLG--LDPSEAILVSAKTGLGVEDLLEA 171 (179)
T ss_pred cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhC--CCcccEEEeeccCCCCHHHHHHH
Confidence 468999999999642110 1111233333221 12235899999999998887544
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-08 Score=94.10 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=82.9
Q ss_pred cEEEEEccCCCCHHHHHH-HHHhhccCCC----cccccCCcccccc-----------chhhhhHhhhcccHHHHHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFN-VLTKRAFEDD----DVTHVEGEVNPVR-----------DIEIINEELRLKDVEHIEKEINK 308 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~-~l~~~~~~~~----~v~~~~gt~dp~~-----------~~~~~~~el~l~Dt~Gi~~~~~~ 308 (561)
.+|.+.|..|+||++|+. .+.+..|... .+.++-|..+... .+......+.+|||+|.++.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 479999999999999995 6665543221 1111111111000 01111246889999997542
Q ss_pred HHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCce
Q psy17315 309 IEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ 387 (561)
Q Consensus 309 l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ 387 (561)
+...+.++..-++..+ ++.+.+.+..+.. |... +.... ...|+
T Consensus 80 ~~~~~~~~ad~iilv~----------------d~t~~~Sf~~~~~~w~~~------------------i~~~~--~~~pi 123 (195)
T cd01873 80 DRRFAYGRSDVVLLCF----------------SIASPNSLRNVKTMWYPE------------------IRHFC--PRVPV 123 (195)
T ss_pred hhcccCCCCCEEEEEE----------------ECCChhHHHHHHHHHHHH------------------HHHhC--CCCCE
Confidence 2222322232222222 3333444444432 3222 11111 36799
Q ss_pred EEEecCChhhhhh-----------------hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 388 IYLVNLSAKDYIK-----------------KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 388 iiv~NK~D~d~~~-----------------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
++|+||+|..... ......++.+++++.. +.+++.+||++|.|++++.+.
T Consensus 124 ilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~--~~~~~E~SAkt~~~V~e~F~~ 190 (195)
T cd01873 124 ILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKEL--GIPYYETSVVTQFGVKDVFDN 190 (195)
T ss_pred EEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHh--CCEEEEcCCCCCCCHHHHHHH
Confidence 9999999642100 0122344555666554 678999999999998877543
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-08 Score=98.82 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=50.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC---CcccCC-----Cc-ccccCccc---------------cccCCeEEEEeCCCccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS---AAAENF-----PF-CTIDPNEN---------------NKVPAFLNVVDIAGLVK 153 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~---~~~~~~-----~~-~T~~~~~~---------------~~~~~~i~l~DtpG~~~ 153 (561)
.|+++|.+|+|||||+++|+... ...+.. .| ++.+.... .+.+..+.++||||...
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 59999999999999999998542 111111 11 11221110 22345799999999753
Q ss_pred CCccccccccccccccccCCEEEEEeccc
Q psy17315 154 GAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 154 ~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
... .....++.+|++++|+|++
T Consensus 84 f~~-------~~~~~l~~aD~~IlVvda~ 105 (267)
T cd04169 84 FSE-------DTYRTLTAVDSAVMVIDAA 105 (267)
T ss_pred HHH-------HHHHHHHHCCEEEEEEECC
Confidence 221 2344568899999999886
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-08 Score=92.21 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCc--cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-Cc---ccCCCcc
Q psy17315 56 KRRKQHLSDKLRPK--ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AA---AENFPFC 129 (561)
Q Consensus 56 ~~w~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~---~~~~~~~ 129 (561)
++|++.+++-+..+ +++....+...... .. .+..++++|.+|||||||+|+|.+.. .. ++..-+.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~--------~l-~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~r 72 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKE--------LL-KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGR 72 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHH--------HH-TTSEEEEECSTTSSHHHHHHHHHTSS----S--------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHH--------Hh-cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCC
Confidence 67899999988887 55554433322111 11 12578999999999999999999874 33 3333222
Q ss_pred cccCccc---cccCCeEEEEeCCCcccCC
Q psy17315 130 TIDPNEN---NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 130 T~~~~~~---~~~~~~i~l~DtpG~~~~~ 155 (561)
.+++++. ...+....++||||+....
T Consensus 73 GkHTTt~~~l~~l~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 73 GKHTTTHRELFPLPDGGYIIDTPGFRSFG 101 (161)
T ss_dssp ------SEEEEEETTSEEEECSHHHHT--
T ss_pred CcccCCCeeEEecCCCcEEEECCCCCccc
Confidence 2222221 3456679999999997543
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-08 Score=97.78 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=31.9
Q ss_pred CceEEEecCChhhhhhh--ccchHHHHHHHHHhcC-CCCeEEeechhhhhhhCCCC
Q psy17315 385 KTQIYLVNLSAKDYIKK--KNKWLPKIKEWVDAND-PGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 385 kP~iiv~NK~D~d~~~~--~~~~~~~l~~~~~~~~-~~~~vi~iSA~~~~gl~~L~ 437 (561)
+|+|+|+||+|...... ......++++++.... +..+++++||++|.|+.+..
T Consensus 131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 45788999996421100 0122334444444331 23569999999999998875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.9e-08 Score=104.29 Aligned_cols=145 Identities=14% Similarity=0.003 Sum_probs=79.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc---------------c------------------CCCcccccCccc--cccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA---------------E------------------NFPFCTIDPNEN--NKVPA 141 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~---------------~------------------~~~~~T~~~~~~--~~~~~ 141 (561)
++|+++|.+++|||||+++|......+ + ..-|.|++.... ...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999996432100 0 011333443221 12344
Q ss_pred eEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhcc
Q psy17315 142 FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAK 217 (561)
Q Consensus 142 ~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK 217 (561)
.+.++||||.... .......+..+|++++|+|+...- .....+.+. .+..+.. + +.||
T Consensus 81 ~~~liDtPGh~~f-------~~~~~~~~~~aD~allVVda~~G~-------~~qt~~~~~----~~~~~~~~~iivviNK 142 (406)
T TIGR02034 81 KFIVADTPGHEQY-------TRNMATGASTADLAVLLVDARKGV-------LEQTRRHSY----IASLLGIRHVVLAVNK 142 (406)
T ss_pred EEEEEeCCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCC-------ccccHHHHH----HHHHcCCCcEEEEEEe
Confidence 7899999996432 122334568899999999975311 000011111 1222222 2 8999
Q ss_pred ccccCcCCCC-CccHHHHHHHhhhc--CCCcEEEEEccCCCCHHH
Q psy17315 218 ADSKKKMGPK-KTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKST 259 (561)
Q Consensus 218 ~D~~~~~~~~-~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~ 259 (561)
+|........ ......+..+.... ...+.+++||.+|.|+..
T Consensus 143 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 143 MDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9997422100 00111222222222 234689999999999763
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-08 Score=92.87 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=35.2
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
...|+++|+||+|.............+...++......+++++||+++.++.++.+.
T Consensus 109 ~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~ 165 (170)
T cd01876 109 LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRAL 165 (170)
T ss_pred cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHH
Confidence 468999999999642111112223334444431223578999999999998777544
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=84.76 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCC-----cccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSA-----AAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~-----~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
...+|+.++|---||||||+-+....+. .+-...|.++..+.. ....++.+|||+|...... ++.- +
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQErfHA----LGPI---Y 82 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQERFHA----LGPI---Y 82 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccchHhhhc----cCce---E
Confidence 3457999999999999999988775441 122223445544432 2345789999999865442 2222 3
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
.|.++..++|.|.++++ .|.++..+-.+++.+.-. |+||+|+.+....+.........- -
T Consensus 83 YRgSnGalLVyDITDrd----------SFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAes----v 148 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRD----------SFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAES----V 148 (218)
T ss_pred EeCCCceEEEEeccchH----------HHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHh----h
Confidence 58899999999887544 344555444445444333 899999986655432222111111 1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
....+..|++.|.|+++||..|+....+.
T Consensus 149 GA~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 149 GALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred chhheecccccccCHHHHHHHHHHHHHHH
Confidence 22457899999999999999998876443
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.2e-08 Score=109.39 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC------cccC------------CCcccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA------AAEN------------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~------~~~~------------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.+|+++|.+|+|||||+|+|..... .+.+ ..|+|.+.... .+.+.++.++||||......
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 4799999999999999999964321 1111 24555554332 23456799999999964321
Q ss_pred cccccccccccccccCCEEEEEeccc
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.....++.+|++++|+|+.
T Consensus 91 -------~~~~~l~~~D~~ilVvda~ 109 (689)
T TIGR00484 91 -------EVERSLRVLDGAVAVLDAV 109 (689)
T ss_pred -------HHHHHHHHhCEEEEEEeCC
Confidence 2345578899999999986
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-08 Score=90.73 Aligned_cols=152 Identities=22% Similarity=0.179 Sum_probs=79.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.++|.+|+|||+|++.+....+.....+.++ .+.... +...+ .++.+|||||..+ ...+.....+.....+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTT--RNYVTTVIEEDGKTYKFNLLDTAGQED-YRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCce--eeeeEEEEEECCEEEEEEEEECCCccc-chHHHHHHHhhhhEEE
Confidence 4789999999999999999998864333332211 111111 22223 4678899999433 3333333222111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ |....+.++... .......+..... ...|+++|+||+|. ..
T Consensus 79 ~~~---------------------d~~~~v~~~~~~-----------~~~~~~~~~~~~~-~~~p~ivv~nK~D~--~~- 122 (161)
T TIGR00231 79 RVF---------------------DIVILVLDVEEI-----------LEKQTKEIIHHAE-SNVPIILVGNKIDL--RD- 122 (161)
T ss_pred EEE---------------------EEeeeehhhhhH-----------hHHHHHHHHHhcc-cCCcEEEEEEcccC--Cc-
Confidence 111 221111111000 0011122222222 27899999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCC
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~ 437 (561)
..........+... ...+++++||+.+.|+.++.
T Consensus 123 -~~~~~~~~~~~~~~-~~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 123 -AKLKTHVAFLFAKL-NGEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred -chhhHHHHHHHhhc-cCCceEEeecCCCCCHHHHH
Confidence 11233333333332 25679999999999987763
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-09 Score=96.31 Aligned_cols=58 Identities=33% Similarity=0.387 Sum_probs=37.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhhhHhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EIINEELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~~~el~l~Dt~Gi~ 303 (561)
..+|.+.|.+|+|||+|+|.+.+..+. .+...+.++ ...... ...+..+.+|||||+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 62 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKIS--IVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIH 62 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceE--eccCCCCceeceEEEEEEcCCeEEEEEECCCCC
Confidence 357999999999999999999987432 122222222 222221 1223468899999964
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=90.93 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=51.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc-------ccCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN-------KVPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~-------~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
+||+++|-++||||||++++++.... ..+..|++....... .....+.+|||+|...... +. -.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~----l~---~~ 73 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS----TR---AV 73 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH----HH---HH
Confidence 47999999999999999999987622 222223222111100 0123589999999853321 11 23
Q ss_pred ccccCCEEEEEecccc
Q psy17315 168 HISACDAIFHLCKEKL 183 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~ 183 (561)
.++.+|++++|+|.+.
T Consensus 74 ~yr~ad~iIlVyDvtn 89 (202)
T cd04102 74 FYNQVNGIILVHDLTN 89 (202)
T ss_pred HhCcCCEEEEEEECcC
Confidence 4688999999998763
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.7e-08 Score=91.06 Aligned_cols=56 Identities=30% Similarity=0.508 Sum_probs=40.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
...++++|.+|+|||||+|.|.+. ....++.++|+|.....+. .+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~--~~~~~~~~~g~T~~~~~~~-~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK--KVCKVAPIPGETKVWQYIT-LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC--CceeeCCCCCeeEeEEEEE-cCCCEEEEECcCC
Confidence 456889999999999999999987 4455666677763322222 2245789999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-08 Score=91.78 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=39.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
...++.+.|.+|+|||+|++.+.+..+. .+.++.|.. ...+...+..+.+|||+|..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~--~~~~t~g~~--~~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS--HITPTQGFN--IKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc--ccCCCCCcc--eEEEEECCEEEEEEECCCCHH
Confidence 4578999999999999999999987432 222222321 112233345788999999543
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-08 Score=93.75 Aligned_cols=53 Identities=28% Similarity=0.491 Sum_probs=35.5
Q ss_pred EEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhh-hHhhhcccHHHHH
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEII-NEELRLKDVEHIE 303 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~-~~el~l~Dt~Gi~ 303 (561)
+.|.+|+|||+|++.+++..+..+.++. .|.+|... +... +..+.+|||||+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPF--TTLEPNLGVVEVPDGARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCc--eeecCcceEEEcCCCCeEEEEeccccc
Confidence 4699999999999999998542333322 12344332 2334 5678999999974
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-08 Score=96.43 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=35.0
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhc-----CCCCeEEeechhhhhhhCCCCH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-----DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~-----~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..+|+++|+||+|..... .....+++.+++... ..+.+++++||++|.|+.++..
T Consensus 116 ~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 116 LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 478999999999642111 112344444443211 1156899999999999988743
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=82.36 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=102.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccC----CccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE----GEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~----gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.+..+.|.-|+|||-|+..++++.|-. .-|++- ||- +..+......+.+|||+| +++++.+.+.+.+++...
T Consensus 12 fkyiiigdmgvgkscllhqftekkfma-dcphtigvefgtr--iievsgqkiklqiwdtag-qerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTR--IIEVSGQKIKLQIWDTAG-QERFRAVTRSYYRGAAGA 87 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhh-cCCcccceeccee--EEEecCcEEEEEEeeccc-HHHHHHHHHHHhccccce
Confidence 467899999999999999999987543 233322 221 112222234688999999 677888999988887655
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+-.+ +|++.....++-.|+.++ +. ++ ....-++++.||.| +-.
T Consensus 88 lmvy----------------ditrrstynhlsswl~da--r~-----lt------------npnt~i~lignkad--le~ 130 (215)
T KOG0097|consen 88 LMVY----------------DITRRSTYNHLSSWLTDA--RN-----LT------------NPNTVIFLIGNKAD--LES 130 (215)
T ss_pred eEEE----------------EehhhhhhhhHHHHHhhh--hc-----cC------------CCceEEEEecchhh--hhh
Confidence 4444 456667777777777661 11 00 02345678999995 444
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCC
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~ 437 (561)
+.+...++.+++.++. +..++..||++|.++++..
T Consensus 131 qrdv~yeeak~faeen--gl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 131 QRDVTYEEAKEFAEEN--GLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred cccCcHHHHHHHHhhc--CeEEEEecccccCcHHHHH
Confidence 4566677888887775 7788999999999987653
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-08 Score=90.62 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=73.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+|||+|++.+.+..+. .. .|. .+.+.. .+|||||..-......+... ..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~---~t~----~~~~~~---~~iDt~G~~~~~~~~~~~~~-------~~-- 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YK---KTQ----AVEYND---GAIDTPGEYVENRRLYSALI-------VT-- 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---cc---cce----eEEEcC---eeecCchhhhhhHHHHHHHH-------HH--
Confidence 5899999999999999999987532 11 111 111111 58999996321111111100 00
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+.++|++..|.+.... . . .+. ..++. . ..+|+++|+||+|. .+ ....
T Consensus 60 ----------------~~~ad~vilv~d~~~~--~---s--~~~---~~~~~-~---~~~p~ilv~NK~Dl--~~-~~~~ 106 (142)
T TIGR02528 60 ----------------AADADVIALVQSATDP--E---S--RFP---PGFAS-I---FVKPVIGLVTKIDL--AE-ADVD 106 (142)
T ss_pred ----------------hhcCCEEEEEecCCCC--C---c--CCC---hhHHH-h---ccCCeEEEEEeecc--CC-cccC
Confidence 1222444433332211 0 0 011 12222 1 24699999999954 22 2233
Q ss_pred HHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 406 LPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 406 ~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+.+.++++... ..+++++||++|.|++++.+
T Consensus 107 ~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 107 IERAKELLETAG-AEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred HHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHH
Confidence 445555555431 34789999999999877643
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-08 Score=89.11 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=70.8
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKML 237 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l 237 (561)
..++.++.++|++++|+|++... . ..-..+.+.+... ..+ +.||+|+....... .....++..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~--------~---~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~-~~~~~~~~~ 70 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL--------L---FRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRK-AWAEYFKKE 70 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc--------c---cCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHH-HHHHHHHhc
Confidence 34677889999999999875321 0 0111233333332 223 89999986321100 000111111
Q ss_pred h-hh-----cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 238 L-GR-----VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 238 ~-~~-----~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
. .. ......+.+.|.+|+|||+|+|.+.+... ..++..+|++.....+.. ...+.+|||||+
T Consensus 71 ~~~ii~iSa~~~~~~~~~~G~~~vGKstlin~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~ 138 (141)
T cd01857 71 GIVVVFFSALKENATIGLVGYPNVGKSSLINALVGKKK--VSVSATPGKTKHFQTIFL-TPTITLCDCPGL 138 (141)
T ss_pred CCeEEEEEecCCCcEEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCcccceEEEEe-CCCEEEEECCCc
Confidence 0 00 12233789999999999999999998743 244445565422222222 236789999996
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-08 Score=91.46 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=80.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||+|++.+....+.....+.+ .+.. ..+... ...+.+|||+|.+. +........+....++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~~a~~~l 77 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTV---FENYVTDCRVDGKPVQLALWDTAGQEE-YERLRPLSYSKAHVIL 77 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc---cceEEEEEEECCEEEEEEEEECCCChh-ccccchhhcCCCCEEE
Confidence 368999999999999999998665533222111 1111 111111 23577999999543 2221111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
..+ .+...+.+..+.. |+. .+.... ...|+++|+||+|.....
T Consensus 78 lv~----------------~i~~~~s~~~~~~~~~~------------------~i~~~~--~~~piilvgnK~Dl~~~~ 121 (187)
T cd04129 78 IGF----------------AVDTPDSLENVRTKWIE------------------EVRRYC--PNVPVILVGLKKDLRQDA 121 (187)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEeeChhhhhCc
Confidence 111 2222233333221 211 122111 368999999999642100
Q ss_pred h--------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 K--------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~--------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
. .....++...+++.. ...+++.+||++|.|++++.+...+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 122 VAKEEYRTQRFVPIQQGKRVAKEI-GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred ccccccccCCcCCHHHHHHHHHHh-CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 0 011123333444433 12478999999999998886655443
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=85.33 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=89.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|..|+||+++++.+.+.. .+.++++-|. .+..+...+.++.+||..| ++.++.+++.|.++....+-
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~--~~~i~pt~gf--~Iktl~~~~~~L~iwDvGG-q~~lr~~W~nYfestdglIw- 89 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED--TDTISPTLGF--QIKTLEYKGYTLNIWDVGG-QKTLRSYWKNYFESTDGLIW- 89 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC--ccccCCccce--eeEEEEecceEEEEEEcCC-cchhHHHHHHhhhccCeEEE-
Confidence 5689999999999999999998873 3333332222 1123344567899999999 67788888888765544322
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
.+.++| .-.+..+... -.+.|.. ..+.+.|+++++||.|....-+.+
T Consensus 90 ---vvDssD------------~~r~~e~~~~-----------------L~~lL~e-erlaG~~~Lvlank~dl~~~l~~~ 136 (185)
T KOG0073|consen 90 ---VVDSSD------------RMRMQECKQE-----------------LTELLVE-ERLAGAPLLVLANKQDLPGALSLE 136 (185)
T ss_pred ---EEECch------------HHHHHHHHHH-----------------HHHHHhh-hhhcCCceEEEEecCcCccccCHH
Confidence 222222 0111111111 1122332 233689999999999653111111
Q ss_pred ch--HHHHHHHHHhcCCCCeEEeechhhhhhhCC
Q psy17315 404 KW--LPKIKEWVDANDPGATIIPFSGVFEHQLVD 435 (561)
Q Consensus 404 ~~--~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~ 435 (561)
.. .-.+++++... ..+++-+||.+|+++.+
T Consensus 137 ~i~~~~~L~~l~ks~--~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 137 EISKALDLEELAKSH--HWRLVKCSAVTGEDLLE 168 (185)
T ss_pred HHHHhhCHHHhcccc--CceEEEEeccccccHHH
Confidence 11 12334444433 67899999999988654
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-08 Score=94.75 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=37.2
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.+|+++++||+|. .. ...+.+.+++.......|++++||++|.|+.+|.+...+
T Consensus 91 ~~~ii~v~nK~Dl--~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 91 SKRQIAVISKTDM--PD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred CCCeEEEEEcccc--Cc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence 6899999999954 22 123445555544422358999999999999988665443
|
|
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-07 Score=82.37 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=95.5
Q ss_pred hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 89 ~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
...+.++.++++++|.-|+||||++..|.+.+ ....+.-|....... ....-.+.++|..|.. ++..-+-+
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~-~~g~f~LnvwDiGGqr-------~IRpyWsN 81 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVE-YDGTFHLNVWDIGGQR-------GIRPYWSN 81 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEe-ecCcEEEEEEecCCcc-------ccchhhhh
Confidence 34455677999999999999999999999887 333333333222111 1122468899999874 33344566
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHH-HHHhcch-hhccccccCcCCCCC-ccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETR-IRDLRRS-VDAKADSKKKMGPKK-TDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~-v~NK~D~~~~~~~~~-~~~~~l~~l~~~~~~~ 244 (561)
+..+.|.+++|+|+++..... ....+-.++++++ +.+.-.. ..||.|+.-.+..+. +....+..+ ..+.+
T Consensus 82 Yyenvd~lIyVIDS~D~krfe-----E~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~l--rdRsw 154 (185)
T KOG0074|consen 82 YYENVDGLIYVIDSTDEKRFE-----EISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGL--RDRSW 154 (185)
T ss_pred hhhccceEEEEEeCCchHhHH-----HHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhh--hhceE
Confidence 778999999999977533221 0001111111111 1111111 678888874332221 000111111 23466
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..-.+|+.+++|.+.-.++++..
T Consensus 155 hIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 155 HIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred EeeeCccccccCccCcchhhhcC
Confidence 77889999999988888887654
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-08 Score=95.43 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=84.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCC--ccccccchhhh-hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEG--EVNPVRDIEII-NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~g--t~dp~~~~~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|+|.|++..+.......+.. ++.....+... ...+.+|||||+.+......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----------- 70 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD----------- 70 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH-----------
Confidence 46899999999999999999986433222111111 11111111111 23688999999743111100
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
+++..+ .+..+|+++.+ .+ ..++..+...+..+.. ..+|+++|+||+|.+....
T Consensus 71 -~~l~~~------------~~~~~d~~l~v----~~--------~~~~~~d~~~~~~l~~-~~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 71 -DYLEEM------------KFSEYDFFIII----SS--------TRFSSNDVKLAKAIQC-MGKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred -HHHHHh------------CccCcCEEEEE----eC--------CCCCHHHHHHHHHHHH-hCCCEEEEEecccchhhhh
Confidence 111000 00111222211 11 2345566666665544 4789999999997643211
Q ss_pred ---------ccchHHHHHHHHHhc-----CCCCeEEeechh--hhhhhCCCCHHHHHH
Q psy17315 402 ---------KNKWLPKIKEWVDAN-----DPGATIIPFSGV--FEHQLVDMPDDERQR 443 (561)
Q Consensus 402 ---------~~~~~~~l~~~~~~~-----~~~~~vi~iSA~--~~~gl~~L~~~~~~~ 443 (561)
.+..++.+++.+... .+..+++++|+. .+.++..|.+.....
T Consensus 125 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~ 182 (197)
T cd04104 125 QRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKD 182 (197)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHH
Confidence 123444554433321 124679999998 567777765544433
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-09 Score=105.45 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=94.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhh-hHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEII-NEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
.+.++|+++|+||+||++|+++|+.......+--| .|.||... .... +..+.+.||.|+ ++.++....+.+..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLF--ATLDpT~h~a~Lpsg~~vlltDTvGF---isdLP~~LvaAF~A 250 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLF--ATLDPTLHSAHLPSGNFVLLTDTVGF---ISDLPIQLVAAFQA 250 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhh--eeccchhhhccCCCCcEEEEeechhh---hhhCcHHHHHHHHH
Confidence 56789999999999999999999977554444444 67788754 3333 467889999999 67777666654444
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCc----eEEEecCCh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT----QIYLVNLSA 395 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP----~iiv~NK~D 395 (561)
++++. .++|+++|++|. +++......+..+..|+.+.. +..| |+-|-||+|
T Consensus 251 TLeeV------------------aeadlllHvvDi------ShP~ae~q~e~Vl~vL~~igv-~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 251 TLEEV------------------AEADLLLHVVDI------SHPNAEEQRETVLHVLNQIGV-PSEPKLQNMIEVDNKID 305 (410)
T ss_pred HHHHH------------------hhcceEEEEeec------CCccHHHHHHHHHHHHHhcCC-CcHHHHhHHHhhccccc
Confidence 43332 455777777663 332211111222344444432 2333 344666763
Q ss_pred hhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 396 KDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 396 ~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..+ . +.+.. ++ ..+++||++|.|+.++..++
T Consensus 306 --~e~---~-------~~e~E-~n-~~v~isaltgdgl~el~~a~ 336 (410)
T KOG0410|consen 306 --YEE---D-------EVEEE-KN-LDVGISALTGDGLEELLKAE 336 (410)
T ss_pred --ccc---c-------cCccc-cC-CccccccccCccHHHHHHHH
Confidence 211 1 11111 12 27899999999998885544
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.9e-08 Score=109.49 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=56.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC------Cccc------------CCCcccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS------AAAE------------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~------~~~~------------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.+|+++|.+|+|||||+|+|.... ..+. ...|+|.+.... .+.+.++.++||||.....
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~- 87 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT- 87 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH-
Confidence 579999999999999999996431 1122 145666654332 2345679999999986422
Q ss_pred cccccccccccccccCCEEEEEeccc
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
......++.+|++++|+|+.
T Consensus 88 ------~e~~~al~~~D~~ilVvDa~ 107 (691)
T PRK12739 88 ------IEVERSLRVLDGAVAVFDAV 107 (691)
T ss_pred ------HHHHHHHHHhCeEEEEEeCC
Confidence 23566778899999999976
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.4e-08 Score=83.80 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=91.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
.++++||..++|||||+|+|.|...... .|.. .+ ...=..+||||..-..+ .+-.+++....++|+|+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQA-ve----~~d~~~IDTPGEy~~~~---~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQA-VE----FNDKGDIDTPGEYFEHP---RWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc----ccce-ee----ccCccccCCchhhhhhh---HHHHHHHHHhhccceee
Confidence 3699999999999999999998762211 1111 11 11123689999864332 22234455668899999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
+|-.+.+... .+.-.+..+..+ +..|+|+.+ ..+....+..+.+.+..+.+.+|+.
T Consensus 70 ~v~~and~~s---------------~f~p~f~~~~~k~vIgvVTK~DLae-----d~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 70 YVHAANDPES---------------RFPPGFLDIGVKKVIGVVTKADLAE-----DADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred eeecccCccc---------------cCCcccccccccceEEEEecccccc-----hHhHHHHHHHHHHcCCcceEEEecc
Confidence 9985543221 111112222222 788999873 3345556777777888899999999
Q ss_pred CCCCHHHHHHHHHhh
Q psy17315 253 PNVGKSTFFNVLTKR 267 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~ 267 (561)
.+.|++.|+..|...
T Consensus 130 d~~gv~~l~~~L~~~ 144 (148)
T COG4917 130 DNQGVEELVDYLASL 144 (148)
T ss_pred CcccHHHHHHHHHhh
Confidence 999999999998654
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=88.60 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=49.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-C--cccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccc---cc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-A--AAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH---IS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~--~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~---i~ 170 (561)
..|.++|.+|+|||+||..|+... . .+|-.|..+... .......+.++|+||..+-+ ..++.. +.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~--~~~~~~~~~lvD~PGH~rlr-------~~~~~~~~~~~ 74 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV--NNSKGKKLRLVDIPGHPRLR-------SKLLDELKYLS 74 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG--SSTCGTCECEEEETT-HCCC-------HHHHHHHHHHG
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe--ecCCCCEEEEEECCCcHHHH-------HHHHHhhhchh
Confidence 469999999999999999999765 1 122222222111 01234569999999985433 334443 78
Q ss_pred cCCEEEEEeccc
Q psy17315 171 ACDAIFHLCKEK 182 (561)
Q Consensus 171 ~~D~il~VvD~~ 182 (561)
.+..|++|+|++
T Consensus 75 ~~k~IIfvvDSs 86 (181)
T PF09439_consen 75 NAKGIIFVVDSS 86 (181)
T ss_dssp GEEEEEEEEETT
T ss_pred hCCEEEEEEeCc
Confidence 899999999986
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=92.56 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+++++||..|+||||++++|+|..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 3579999999999999999999875
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=95.58 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=67.6
Q ss_pred CCCCc----cCCCChHHHH--HHHHHHHhcCCCc--cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHH
Q psy17315 42 DKPTW----GDGDGPKAPK--RRKQHLSDKLRPK--ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFF 113 (561)
Q Consensus 42 ~k~~l----~DL~~~~~~~--~w~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStli 113 (561)
-.|.+ +||++.+... .+...++.-+..+ +++....+..... ... .+...+++|.+|||||||+
T Consensus 111 i~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~--------~~l-~~~~svl~GqSGVGKSSLi 181 (301)
T COG1162 111 IEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELA--------ELL-AGKITVLLGQSGVGKSTLI 181 (301)
T ss_pred CcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHH--------HHh-cCCeEEEECCCCCcHHHHH
Confidence 35665 9999877666 5777777778777 5555543332211 111 1236789999999999999
Q ss_pred HHHhcCC-C---cccCCCcccccCccc---cccCCeEEEEeCCCcccCC
Q psy17315 114 NVLTKSS-A---AAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 114 n~L~~~~-~---~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~ 155 (561)
|+|.+.. . .++..-+-.+++++. ...+.+-.++||||+.+..
T Consensus 182 N~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 182 NALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLG 230 (301)
T ss_pred HhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccC
Confidence 9999754 3 344444444444333 2345678999999996543
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=107.47 Aligned_cols=135 Identities=13% Similarity=0.044 Sum_probs=79.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc---CC---Cccc------------CCCcccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK---SS---AAAE------------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~---~~---~~~~------------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.+|+++|.+|+|||||+|+|.. .. ..+. ...|+|++.... .+.+..+.|+||||.....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~- 89 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT- 89 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH-
Confidence 4799999999999999999963 21 1122 245666665332 2345689999999975322
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGE 233 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~ 233 (561)
......++.+|++++|+|+...- ... -..+-..+.....+ ++||+|..+.. ....
T Consensus 90 ------~ev~~al~~~D~~vlVvda~~g~-------~~q----t~~~~~~~~~~~~p~iv~vNK~D~~~~~-----~~~~ 147 (693)
T PRK00007 90 ------IEVERSLRVLDGAVAVFDAVGGV-------EPQ----SETVWRQADKYKVPRIAFVNKMDRTGAD-----FYRV 147 (693)
T ss_pred ------HHHHHHHHHcCEEEEEEECCCCc-------chh----hHHHHHHHHHcCCCEEEEEECCCCCCCC-----HHHH
Confidence 12455678889999999875210 000 01111223333333 89999998422 2233
Q ss_pred HHHHhhhcCC---CcEEEEEccCC
Q psy17315 234 KKMLLGRVGT---NLKVGIVGVPN 254 (561)
Q Consensus 234 l~~l~~~~~~---~~~i~isg~~~ 254 (561)
+..+...+.. ...+++|+..+
T Consensus 148 ~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 148 VEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHHhCCCeeeEEecCccCCc
Confidence 4444444433 33456665554
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.5e-08 Score=92.82 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCccc----c---------cCCcc-ccc-cchhhhhHhhhcccHHHHHHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVT----H---------VEGEV-NPV-RDIEIINEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~----~---------~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l 309 (561)
..+++.|..++|||+|.+.|+.......... . ..|.+ +.. ..++..+.++.++||||........
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 4689999999999999999987521111100 0 11222 221 1233344578999999975432222
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCc-eE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT-QI 388 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP-~i 388 (561)
.... ..+|.+..|++... .....+.+.+..... .++| +|
T Consensus 83 ~~~~-----------------------------~~~D~~ilVvda~~----------g~~~~~~~~~~~~~~-~~~~~iI 122 (195)
T cd01884 83 ITGA-----------------------------AQMDGAILVVSATD----------GPMPQTREHLLLARQ-VGVPYIV 122 (195)
T ss_pred HHHh-----------------------------hhCCEEEEEEECCC----------CCcHHHHHHHHHHHH-cCCCcEE
Confidence 1111 01122222222111 122333444443333 4676 77
Q ss_pred EEecCChhhhhhhc---cchHHHHHHHHHhcC---CCCeEEeechhhhhhhCC
Q psy17315 389 YLVNLSAKDYIKKK---NKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVD 435 (561)
Q Consensus 389 iv~NK~D~d~~~~~---~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~ 435 (561)
+|+||+|. .... +...+++++.+.... .+.+++|+||++|.++.+
T Consensus 123 vviNK~D~--~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 123 VFLNKADM--VDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred EEEeCCCC--CCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC
Confidence 89999964 2211 112234555554321 247899999999998654
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.8e-08 Score=84.28 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=93.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
-.+|.++|.-|+||+-|...+++..|.......+. +|-. ..++..+ ..+.+|||+| +++++.+.+.+++++..+
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatig--vdfmiktvev~gekiklqiwdtag-qerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIG--VDFMIKTVEVNGEKIKLQIWDTAG-QERFRSITQSYYRSAHAL 83 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceee--eeEEEEEEEECCeEEEEEEeeccc-hHHHHHHHHHHhhhcceE
Confidence 36799999999999999999999877554433221 1111 1122222 3588999999 677999999988877655
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +|.......-+-+|+.+ +..+.- ...--|+|.||+|.+.
T Consensus 84 ilvy----------------discqpsfdclpewlre------------------ie~yan-~kvlkilvgnk~d~~d-- 126 (213)
T KOG0095|consen 84 ILVY----------------DISCQPSFDCLPEWLRE------------------IEQYAN-NKVLKILVGNKIDLAD-- 126 (213)
T ss_pred EEEE----------------ecccCcchhhhHHHHHH------------------HHHHhh-cceEEEeeccccchhh--
Confidence 4444 12211222222233322 333321 1233578999996532
Q ss_pred hccchHHHHH-HHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIK-EWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~-~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
..+.-+++- ++.+.. +.-++.+||+...+++.|..+.+.+..
T Consensus 127 -rrevp~qigeefs~~q--dmyfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 127 -RREVPQQIGEEFSEAQ--DMYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred -hhhhhHHHHHHHHHhh--hhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 222222232 222222 344788999999998888666555443
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6e-07 Score=98.58 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCc------ccccCcc---------------ccccCCeEEEEeCCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPF------CTIDPNE---------------NNKVPAFLNVVDIAGL 151 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~------~T~~~~~---------------~~~~~~~i~l~DtpG~ 151 (561)
..+|+|+|.+|+|||||+++|+... ...+...+ ++.+... ..+.+..+.++||||.
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 3579999999999999999996322 11111111 1111100 0123457999999998
Q ss_pred ccCCccccccccccccccccCCEEEEEecccc
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
.... ......++.+|++++|+|++.
T Consensus 90 ~df~-------~~~~~~l~~aD~aIlVvDa~~ 114 (526)
T PRK00741 90 EDFS-------EDTYRTLTAVDSALMVIDAAK 114 (526)
T ss_pred hhhH-------HHHHHHHHHCCEEEEEEecCC
Confidence 5332 123455688999999999863
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-07 Score=103.95 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCC-CcccccCccc--cccCCeEEEEeCCCcccCCccc---ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENF-PFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEG---QGLGNAFLS 167 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~-~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~---~~~~~~~l~ 167 (561)
..++|+++|.|||||||++|+|+|.. ..++.. +++|.. ... ...+..+.+|||||+....... ..+......
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 44689999999999999999999987 556655 555543 221 2335679999999998653211 112122222
Q ss_pred ccc--cCCEEEEEec
Q psy17315 168 HIS--ACDAIFHLCK 180 (561)
Q Consensus 168 ~i~--~~D~il~VvD 180 (561)
.+. .+|++|+|..
T Consensus 196 ~Lsk~gpDVVLlV~R 210 (763)
T TIGR00993 196 FIKKNPPDIVLYVDR 210 (763)
T ss_pred HHhcCCCCEEEEEEe
Confidence 222 4799998873
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-07 Score=92.72 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=51.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-Cccc-CCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccc----cc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAE-NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFL----SH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~-~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l----~~ 168 (561)
++|.++|.+|+||||++|+|+|.. ...+ ....+|...... ...+..+.++||||+.........+...+. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 379999999999999999999988 3333 234455554332 234568999999999754432222222222 12
Q ss_pred cccCCEEEEEecc
Q psy17315 169 ISACDAIFHLCKE 181 (561)
Q Consensus 169 i~~~D~il~VvD~ 181 (561)
....+++++|+..
T Consensus 81 ~~g~ha~llVi~~ 93 (212)
T PF04548_consen 81 SPGPHAFLLVIPL 93 (212)
T ss_dssp TT-ESEEEEEEET
T ss_pred cCCCeEEEEEEec
Confidence 3557999999954
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-08 Score=93.12 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhc-CCCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~-~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.+|+++|+||+|...........+.+++++... ..+.+++++||++|.|+++|.+.
T Consensus 137 ~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~ 193 (203)
T cd01888 137 LKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEY 193 (203)
T ss_pred CCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHH
Confidence 358999999995421111122234455544321 12567999999999998887543
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-07 Score=83.07 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=108.6
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc--cccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE--VNPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt--~dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
+...++.+.|...+||++++...+...|..+-++.+.-. +..+ +.. ....+++|||+|. ++++.+.-.+++++.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTv--yr~~kRiklQiwDTagq-EryrtiTTayyRgam 95 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV--YRSDKRIKLQIWDTAGQ-ERYRTITTAYYRGAM 95 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEe--eecccEEEEEEEecccc-hhhhHHHHHHhhccc
Confidence 334589999999999999999999998888777664311 1111 000 1245889999995 558888878877776
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
..+..+ .+++.+.+..+.+|... +++ +. ..+.|+|+|+||+|.|.
T Consensus 96 gfiLmy----------------DitNeeSf~svqdw~tq--Ikt----------------ys-w~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 96 GFILMY----------------DITNEESFNSVQDWITQ--IKT----------------YS-WDNAQVILVGNKCDMDS 140 (193)
T ss_pred eEEEEE----------------ecCCHHHHHHHHHHHHH--hee----------------ee-ccCceEEEEecccCCcc
Confidence 655555 66777888878887665 222 11 14789999999996543
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
......++.+.+..+. +..++..|||.+.++.++.++..
T Consensus 141 --eRvis~e~g~~l~~~L--GfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 141 --ERVISHERGRQLADQL--GFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred --ceeeeHHHHHHHHHHh--ChHHhhhcccccccHHHHHHHHH
Confidence 2333445555555555 66789999999999877755543
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-08 Score=96.68 Aligned_cols=149 Identities=16% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcC------C---CcccCC-Cccc--------------ccCccc-----------
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKS------S---AAAENF-PFCT--------------IDPNEN----------- 136 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~------~---~~~~~~-~~~T--------------~~~~~~----------- 136 (561)
...+...|||.|.||+|||||+++|... + ..+.|. |++. .++...
T Consensus 25 ~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lG 104 (266)
T PF03308_consen 25 HTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLG 104 (266)
T ss_dssp GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHH
T ss_pred hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCC
Confidence 3445689999999999999999999632 2 111111 1110 011000
Q ss_pred -------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHH
Q psy17315 137 -------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLL 203 (561)
Q Consensus 137 -------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l 203 (561)
...+..+.|+-|.|+- ++ -..-..-||.+++|+-+. .-..++.+
T Consensus 105 Gls~~t~~~v~ll~aaG~D~IiiETVGvG--Qs--------E~~I~~~aD~~v~v~~Pg-------------~GD~iQ~~ 161 (266)
T PF03308_consen 105 GLSRATRDAVRLLDAAGFDVIIIETVGVG--QS--------EVDIADMADTVVLVLVPG-------------LGDEIQAI 161 (266)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEEESSS--TH--------HHHHHTTSSEEEEEEESS-------------TCCCCCTB
T ss_pred CccHhHHHHHHHHHHcCCCEEEEeCCCCC--cc--------HHHHHHhcCeEEEEecCC-------------CccHHHHH
Confidence 1124467888888873 22 123346679998888332 22334444
Q ss_pred HHHHHHhcch-hhccccccCcCCCCCccHHHHHHHhhhc------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 204 ETRIRDLRRS-VDAKADSKKKMGPKKTDEGEKKMLLGRV------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 204 ~~~l~~~~~~-v~NK~D~~~~~~~~~~~~~~l~~l~~~~------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+..+.++... |.||+|...... ...+++..+... +..+++.+|+.+|.|++.|..+|.+.
T Consensus 162 KaGimEiaDi~vVNKaD~~gA~~----~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 162 KAGIMEIADIFVVNKADRPGADR----TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -TTHHHH-SEEEEE--SHHHHHH----HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred hhhhhhhccEEEEeCCChHHHHH----HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 5556666555 899999663211 111233332221 23578999999999999999999775
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-07 Score=85.06 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=100.0
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hh---------hhHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EI---------INEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~---------~~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
+...|..|+||++++-..+...|...-++.+.=...+.+-+ .. ....+.+|||+| ++++..+.....+.
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-QERFRSLTTAFfRD 90 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-QERFRSLTTAFFRD 90 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc-HHHHHHHHHHHHHh
Confidence 34468899999999999988887776666543222222211 00 112478999999 56676666544332
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
+- ||..--+++.....+.+.+|+.+ |+......+.-+|++.||+|.
T Consensus 91 AM----------------GFlLiFDlT~eqSFLnvrnWlSQ------------------L~~hAYcE~PDivlcGNK~DL 136 (219)
T KOG0081|consen 91 AM----------------GFLLIFDLTSEQSFLNVRNWLSQ------------------LQTHAYCENPDIVLCGNKADL 136 (219)
T ss_pred hc----------------cceEEEeccchHHHHHHHHHHHH------------------HHHhhccCCCCEEEEcCccch
Confidence 22 22222255666778888888765 221222235568899999954
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
.+......++..++++.. +.|.+.+||-+|.++++..+-.....+++
T Consensus 137 --~~~R~Vs~~qa~~La~ky--glPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 137 --EDQRVVSEDQAAALADKY--GLPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred --hhhhhhhHHHHHHHHHHh--CCCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 332333344555555554 78999999999999888766555555544
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-07 Score=99.91 Aligned_cols=162 Identities=17% Similarity=0.080 Sum_probs=88.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCc-------------------------------ccCCCcccccCccc--cccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAA-------------------------------AENFPFCTIDPNEN--NKVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~-------------------------------~~~~~~~T~~~~~~--~~~~ 140 (561)
...++|+++|..++|||||+.+|+..... .....|.|.+.... ....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34578999999999999999999742100 00123445443222 1223
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
..+.|+||||.... .......+..+|++++|+|+........-.......+.+ ..+..++.+ +.|
T Consensus 85 ~~i~lIDtPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~----~~~~~~gi~~iiv~vN 153 (446)
T PTZ00141 85 YYFTIIDAPGHRDF-------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA----LLAFTLGVKQMIVCIN 153 (446)
T ss_pred eEEEEEECCChHHH-------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH----HHHHHcCCCeEEEEEE
Confidence 47899999996422 223455578899999999876321000000000111111 123333332 899
Q ss_pred cccccCcCCCCC---ccHHHHHHHhhhcC----CCcEEEEEccCCCCHH------------HHHHHHHh
Q psy17315 217 KADSKKKMGPKK---TDEGEKKMLLGRVG----TNLKVGIVGVPNVGKS------------TFFNVLTK 266 (561)
Q Consensus 217 K~D~~~~~~~~~---~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks------------~l~~~l~~ 266 (561)
|+|......... ....++...+.... ..+.|++||.+|.|+. +|+++|.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~ 222 (446)
T PTZ00141 154 KMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT 222 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC
Confidence 999542110000 11122333333222 3567999999999985 47777654
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.9e-07 Score=96.31 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=90.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCc----------------------cc------------
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPN----------------------EN------------ 136 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~----------------------~~------------ 136 (561)
...+.||++|.-..|||||+.+|++... .-.-.-|.|.+.- .+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 3457899999999999999999998541 1111112221110 00
Q ss_pred -cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h-
Q psy17315 137 -NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S- 213 (561)
Q Consensus 137 -~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~- 213 (561)
......+.++||||.. .+....+..+..+|++++|+|+...- ......+.+. .+..+.. +
T Consensus 112 ~~~~~~~i~~IDtPGH~-------~fi~~m~~g~~~~D~alLVVda~~g~------~~~qT~ehl~----i~~~lgi~~i 174 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAANESC------PQPQTSEHLA----AVEIMKLKHI 174 (460)
T ss_pred cccccceEeeeeCCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCc------cchhhHHHHH----HHHHcCCCcE
Confidence 0012368899999953 22333455667899999999876210 0011111111 1111211 1
Q ss_pred --hhccccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 214 --VDAKADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 214 --v~NK~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.||+|+....... ....++..+... ....+.+++||.+|.|+++|++.|.+..
T Consensus 175 IVvlNKiDlv~~~~~~-~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 175 IILQNKIDLVKEAQAQ-DQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred EEEEecccccCHHHHH-HHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 89999997321110 011122222211 2356789999999999999999998754
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-07 Score=92.31 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=69.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccc---------------cCCeEEEEeCCCcccCCcc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNK---------------VPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~---------------~~~~i~l~DtpG~~~~~~~ 157 (561)
..+||+++|..+||||||++++.+... ...+..|++........ ....+.||||+|......
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs- 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD- 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh-
Confidence 347999999999999999999997652 22223333221110000 123489999999754332
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---------------ch---hhcccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---------------RS---VDAKAD 219 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------------~~---v~NK~D 219 (561)
+. -..++++|++++|+|.+.+ ..++++..+.+.+.... .. |+||+|
T Consensus 99 ---L~---~~yyr~AdgiILVyDITdr----------~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 99 ---CR---SLFYSQINGVIFVHDLSQR----------RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred ---hh---HHhccCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 11 2336889999999987632 23445554444444321 11 899999
Q ss_pred ccCc
Q psy17315 220 SKKK 223 (561)
Q Consensus 220 ~~~~ 223 (561)
+.+.
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 9754
|
|
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-07 Score=81.57 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=87.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCccccc--Cccc----cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID--PNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~--~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.||.+||-.|||||-|+..++..-.+++. |.|.. .... ......+++|||+|....++- .-.+.|
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgq--gatigvdfmiktvev~gekiklqiwdtagqerfrsi-------tqsyyr 78 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI-------TQSYYR 78 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCC--CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH-------HHHHhh
Confidence 68999999999999999999965543332 22222 1110 112236899999998655431 234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h------hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S------VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
.|+++++|.|.+- ...++-+.++|.++.. . |+||+|+.++.+.......++.+...
T Consensus 79 sahalilvydisc-------------qpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qd-- 143 (213)
T KOG0095|consen 79 SAHALILVYDISC-------------QPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQD-- 143 (213)
T ss_pred hcceEEEEEeccc-------------CcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhh--
Confidence 8999999998651 1223344444444322 2 89999998775543322222322211
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..-...|++...+++.|+-.+.-+
T Consensus 144 --myfletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 144 --MYFLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred --hhhhhhcccchhhHHHHHHHHHHH
Confidence 123456777777777777666544
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.2e-08 Score=108.21 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=82.2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc--chhh----hhHhhhcccHHHHHHHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR--DIEI----INEELRLKDVEHIEKEINKIEKLVQR 315 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~--~~~~----~~~el~l~Dt~Gi~~~~~~l~~~~~~ 315 (561)
...+.|.+.|..++||++|+++|.+..+...... |.+..+. .+.+ .+..+.||||||... +..+...+..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~---GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-F~~mr~rg~~ 317 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAG---GITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-FSSMRSRGAN 317 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCC---ccccccceEEEEEEecCCceEEEEEECCcHHH-HHHHHHHHHH
Confidence 4668899999999999999999988765433221 2211111 1111 235689999999543 3333322211
Q ss_pred CCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCCh
Q psy17315 316 GDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSA 395 (561)
Q Consensus 316 ~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D 395 (561)
.. |+++.|+++.. .......+.+..... ...|+|+|+||+|
T Consensus 318 ~a----------------------------DiaILVVDA~d----------Gv~~QT~E~I~~~k~-~~iPiIVViNKiD 358 (742)
T CHL00189 318 VT----------------------------DIAILIIAADD----------GVKPQTIEAINYIQA-ANVPIIVAINKID 358 (742)
T ss_pred HC----------------------------CEEEEEEECcC----------CCChhhHHHHHHHHh-cCceEEEEEECCC
Confidence 11 22222222100 011122223333322 4789999999996
Q ss_pred hhhhhhccchHHHHHHH---HHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 396 KDYIKKKNKWLPKIKEW---VDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 396 ~d~~~~~~~~~~~l~~~---~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..... .....+.+..+ .+......+++++||++|.|+.+|.+..
T Consensus 359 l~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I 405 (742)
T CHL00189 359 KANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETI 405 (742)
T ss_pred ccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence 42210 01112222221 1111113689999999999998885543
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-08 Score=93.96 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=80.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCccc---------c------cCCcc-ccc-cchh--hhhHhhhcccHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVT---------H------VEGEV-NPV-RDIE--IINEELRLKDVEHIEK 304 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~---------~------~~gt~-dp~-~~~~--~~~~el~l~Dt~Gi~~ 304 (561)
...|.++|..++|||+|++.|....-...... . ..|.+ +.. ..+. ..+..+.++||||-..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 35799999999999999999998752221100 0 00111 100 1122 3345788999999543
Q ss_pred HHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccC
Q psy17315 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTA 384 (561)
Q Consensus 305 ~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~ 384 (561)
......... ..+|...++ +++.. .......+.+..... ..
T Consensus 83 f~~~~~~~~---------------~~~D~ailv--------------Vda~~----------g~~~~~~~~l~~~~~-~~ 122 (188)
T PF00009_consen 83 FIKEMIRGL---------------RQADIAILV--------------VDAND----------GIQPQTEEHLKILRE-LG 122 (188)
T ss_dssp HHHHHHHHH---------------TTSSEEEEE--------------EETTT----------BSTHHHHHHHHHHHH-TT
T ss_pred eeeccccee---------------cccccceee--------------eeccc----------ccccccccccccccc-cc
Confidence 222222111 011111111 11110 122333444443333 57
Q ss_pred CceEEEecCChhhhhhhccchHHHHH-HHHHhcC-C---CCeEEeechhhhhhhCCCCHH
Q psy17315 385 KTQIYLVNLSAKDYIKKKNKWLPKIK-EWVDAND-P---GATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 385 kP~iiv~NK~D~d~~~~~~~~~~~l~-~~~~~~~-~---~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.|+++|+||+|....+ -....+++. .+++... . ..|++++||.+|.|+.+|.+.
T Consensus 123 ~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~ 181 (188)
T PF00009_consen 123 IPIIVVLNKMDLIEKE-LEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEA 181 (188)
T ss_dssp -SEEEEEETCTSSHHH-HHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHH
T ss_pred cceEEeeeeccchhhh-HHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHH
Confidence 8999999999653111 122334444 2222221 1 358999999999999877544
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-07 Score=95.48 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=48.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-----CcccCCCcccccCccccc-cCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-----AAAENFPFCTIDPNENNK-VPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-----~~~~~~~~~T~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
..++.|+|+|-+|+|||||||+|.|-. +...+...+|.++..... ....+.+||.||+..+..... .++.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~----~Yl~ 108 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE----EYLK 108 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH----HHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH----HHHH
Confidence 356899999999999999999998742 111122345555544321 224799999999975443211 2222
Q ss_pred --ccccCCEEEEEeccc
Q psy17315 168 --HISACDAIFHLCKEK 182 (561)
Q Consensus 168 --~i~~~D~il~VvD~~ 182 (561)
.+...|.+++|.+.+
T Consensus 109 ~~~~~~yD~fiii~s~r 125 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSER 125 (376)
T ss_dssp HTTGGG-SEEEEEESSS
T ss_pred HccccccCEEEEEeCCC
Confidence 246789998888543
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-08 Score=110.17 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=83.2
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc--cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV--RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~--~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
....+.|.+.|..++||++|+++|.+..+...... |.+..+ ..+.+.+..+.||||||... +..+..... .
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~---GIT~~iga~~v~~~~~~ItfiDTPGhe~-F~~m~~rga---~ 359 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG---GITQHIGAYQVETNGGKITFLDTPGHEA-FTAMRARGA---Q 359 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccC---ceeeeccEEEEEECCEEEEEEECCCCcc-chhHHHhhh---h
Confidence 35678999999999999999999987655433322 222111 12333346789999999533 322221111 0
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
. + |+++.|++.. + ....+..+.+..... ...|+|+|+||+|...
T Consensus 360 ~-----------a--------------DiaILVVdAd-d---------Gv~~qT~e~i~~a~~-~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 360 V-----------T--------------DIVVLVVAAD-D---------GVMPQTIEAINHAKA-AGVPIIVAINKIDKPG 403 (787)
T ss_pred h-----------C--------------CEEEEEEECC-C---------CCCHhHHHHHHHHHh-cCCcEEEEEECccccc
Confidence 0 0 2222111110 0 011122223332222 4789999999996522
Q ss_pred hhhccchHHHHHHH---HHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 399 IKKKNKWLPKIKEW---VDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 399 ~~~~~~~~~~l~~~---~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.. .......+.+. .+.+....+++++||++|.|+.+|.+..
T Consensus 404 a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I 447 (787)
T PRK05306 404 AN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAI 447 (787)
T ss_pred cC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhh
Confidence 11 11122222221 1111113689999999999999886544
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-07 Score=92.41 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCceEEEecCChhhhh---h-hccchHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCC
Q psy17315 384 AKTQIYLVNLSAKDYI---K-KKNKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~---~-~~~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~ 437 (561)
.+|+|+|+||+|.... . ......+.+++.+.... ...+++++||++|.||.+-.
T Consensus 137 ~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~ 197 (219)
T cd01883 137 VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKS 197 (219)
T ss_pred CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCC
Confidence 4789999999965310 0 01223344444444321 13679999999999998653
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=100.52 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC---cccC---------------CCcccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA---AAEN---------------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~---~~~~---------------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.+|+++|..|+|||||+++|..... ..+. ..+.|...... .+....+.+|||||.....
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~- 87 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT- 87 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH-
Confidence 5799999999999999999975321 1110 11223222111 2235579999999986432
Q ss_pred cccccccccccccccCCEEEEEecccc
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
......++.+|++++|+|++.
T Consensus 88 ------~~~~~~l~~aD~~ilVvd~~~ 108 (687)
T PRK13351 88 ------GEVERSLRVLDGAVVVFDAVT 108 (687)
T ss_pred ------HHHHHHHHhCCEEEEEEeCCC
Confidence 123455688999999999863
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=87.45 Aligned_cols=120 Identities=15% Similarity=0.047 Sum_probs=65.1
Q ss_pred CeEEEEeCCCcccCCcccccccccccccccc--CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hh
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA--CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VD 215 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~--~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~ 215 (561)
..+.++||||..++... ......+...+.. ++++++|+|++..... ........+... ..+ ....+ |+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~----~d~~~~~~l~~~-~~~-~~~~~~i~v~ 169 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTP----SDFVSLLLLALS-VQL-RLGLPQIPVL 169 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCH----HHHHHHHHHHHH-HHH-HcCCCEEEEE
Confidence 36899999998765432 2333444444443 8999999987521100 000000000000 001 12222 89
Q ss_pred ccccccCcCCCCCccHHHHH------------------------H-HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 216 AKADSKKKMGPKKTDEGEKK------------------------M-LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 216 NK~D~~~~~~~~~~~~~~l~------------------------~-l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
||+|+.+...... ....+. . +.........+.+|+.++.|++.|+++|.+..
T Consensus 170 nK~D~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 170 NKADLLSEEELER-ILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred EhHhhcCchhHHH-HHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 9999985533210 000000 0 11112335779999999999999999998875
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=87.24 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=93.1
Q ss_pred hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcC------CC---cccCCCcccccCccc----------------------
Q psy17315 88 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS------SA---AAENFPFCTIDPNEN---------------------- 136 (561)
Q Consensus 88 ~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~------~~---~~~~~~~~T~~~~~~---------------------- 136 (561)
.......+...|||.|.||||||||+-+|... .+ .+.|....|....-+
T Consensus 43 ~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr 122 (323)
T COG1703 43 ALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR 122 (323)
T ss_pred HHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCC
Confidence 34566677789999999999999999999531 11 111111111111111
Q ss_pred -----------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhh
Q psy17315 137 -----------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRN 199 (561)
Q Consensus 137 -----------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~ 199 (561)
.-.+..+.++-|.|+-... ..-+.-+|.+++|+= ...-..
T Consensus 123 G~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse----------v~I~~~aDt~~~v~~-------------pg~GD~ 179 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE----------VDIANMADTFLVVMI-------------PGAGDD 179 (323)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch----------hHHhhhcceEEEEec-------------CCCCcH
Confidence 0123356777777663211 222455688877772 223456
Q ss_pred HHHHHHHHHHhcch-hhccccccCcCCCCCccHHHHHHHh----hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 200 LKLLETRIRDLRRS-VDAKADSKKKMGPKKTDEGEKKMLL----GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 200 ~~~l~~~l~~~~~~-v~NK~D~~~~~~~~~~~~~~l~~l~----~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
++.++..+.++... +.||.|.......--.....+.... ...+..+.+..|+..|.|+++|++.+.+..
T Consensus 180 ~Q~iK~GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 180 LQGIKAGIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHhhhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 67777788887777 9999995422100000011122221 122456789999999999999999998763
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-07 Score=89.86 Aligned_cols=85 Identities=15% Similarity=0.021 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC--CCcc-cCCCcccccCccccc-----cCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS--SAAA-ENFPFCTIDPNENNK-----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~--~~~~-~~~~~~T~~~~~~~~-----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
.-|+|+|.+++|||||+|.|.+. ...+ ...+.||+....+.. ....+.++||||+....... ......+.+
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~~~~~~~~~ 86 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-FEDDARLFA 86 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-hhhhhHHHH
Confidence 46899999999999999999998 5443 345788887655421 13679999999998544321 011112222
Q ss_pred cc--cCCEEEEEeccc
Q psy17315 169 IS--ACDAIFHLCKEK 182 (561)
Q Consensus 169 i~--~~D~il~VvD~~ 182 (561)
+. -+|++++.++..
T Consensus 87 l~~llss~~i~n~~~~ 102 (224)
T cd01851 87 LATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHhCEEEEeccCc
Confidence 33 379999998653
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-07 Score=103.52 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=80.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.|.+.|..++|||+|++++++.....-......|.+ +... .+...+..+.+|||||-++.... +..+...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~----~~~g~~~---- 73 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN----AIAGGGG---- 73 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH----HHhhhcc----
Confidence 588999999999999999997531110000112322 2211 12333456889999995443222 1111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCc-eEEEecCChhhhhhhc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT-QIYLVNLSAKDYIKKK 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP-~iiv~NK~D~d~~~~~ 402 (561)
+|.+..|++..+ .+..+..+.+..... .+.| +++|+||+|. .+..
T Consensus 74 ---------------------aD~aILVVDa~~----------G~~~qT~ehl~il~~-lgi~~iIVVlNK~Dl--v~~~ 119 (581)
T TIGR00475 74 ---------------------IDAALLVVDADE----------GVMTQTGEHLAVLDL-LGIPHTIVVITKADR--VNEE 119 (581)
T ss_pred ---------------------CCEEEEEEECCC----------CCcHHHHHHHHHHHH-cCCCeEEEEEECCCC--CCHH
Confidence 122222222111 011112222222222 3567 9999999954 3211
Q ss_pred --cchHHHHHHHHHhcC--CCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 --NKWLPKIKEWVDAND--PGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 --~~~~~~l~~~~~~~~--~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++++++.... ++.+++++||++|.|+.++.+...
T Consensus 120 ~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~ 162 (581)
T TIGR00475 120 EIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELK 162 (581)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHH
Confidence 112334555444321 257899999999999999866543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=89.94 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-hhccc
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-VDAKA 218 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-v~NK~ 218 (561)
+..+.|+||||+.... ...+..+|.++++.+.. ..+.+..+...+.+.-.. +.||+
T Consensus 126 g~D~viidT~G~~~~e----------~~i~~~aD~i~vv~~~~-------------~~~el~~~~~~l~~~~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE----------VDIANMADTFVVVTIPG-------------TGDDLQGIKAGLMEIADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhh----------hHHHHhhceEEEEecCC-------------ccHHHHHHHHHHhhhccEEEEEcc
Confidence 4568999999975222 12345678888876322 112222222222222112 89999
Q ss_pred cccCcCCCCCccH---HHHHHHhhhcCC--CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 219 DSKKKMGPKKTDE---GEKKMLLGRVGT--NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 219 D~~~~~~~~~~~~---~~l~~l~~~~~~--~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
|............ ..+..+...... .+.+.+|+.+|.|++.|++++.+.
T Consensus 183 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 183 DGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred cccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 9984322100000 011222121111 358999999999999999999875
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.7e-08 Score=105.93 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=81.3
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc--chhhhhH-hhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR--DIEIINE-ELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~--~~~~~~~-el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
...+.+.+.|..++|||+|++++.+..+.....+ |.+..+. .+.+.+. .+.+|||||-+ .+..+.... ..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~---GIT~~ig~~~v~~~~~~~i~~iDTPGhe-~F~~~r~rg---a~ 157 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAG---GITQHIGAYHVENEDGKMITFLDTPGHE-AFTSMRARG---AK 157 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCC---ceeecceEEEEEECCCcEEEEEECCCCc-chhhHHHhh---hc
Confidence 4568999999999999999999988755443322 2221111 1222233 78999999943 333322211 11
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
. +|.+..|++.. + ....+..+.+..... ...|+++++||+|...
T Consensus 158 ~-------------------------aDiaILVVda~-d---------gv~~qT~e~i~~~~~-~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 158 V-------------------------TDIVVLVVAAD-D---------GVMPQTIEAISHAKA-ANVPIIVAINKIDKPE 201 (587)
T ss_pred c-------------------------CCEEEEEEECC-C---------CCCHhHHHHHHHHHH-cCCCEEEEEECccccc
Confidence 0 02221111110 0 011222233332222 4789999999996421
Q ss_pred hhhccchHHHHHHH---HHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 399 IKKKNKWLPKIKEW---VDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 399 ~~~~~~~~~~l~~~---~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.. .+.....+.+. ...+....+++++||++|.|+.+|.+..
T Consensus 202 ~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 202 AN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred CC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 11 11112222211 1111112579999999999999886544
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.5e-07 Score=99.87 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.|.+.|..|+|||+|+++|.+..+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~ 30 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA 30 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc
Confidence 3578999999999999999999987654
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=6e-07 Score=79.36 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+..|+|-|+||||+|+-........-+-..-+..+.... .. ....+++|||+|....+. ..-...+...
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt-------itstyyrgth 82 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT-------ITSTYYRGTH 82 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH-------HHHHHccCCc
Confidence 467899999999999998876542211111111111110 11 123588999999754331 1123357789
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
.++.|.|.+.. ..+++...+.++++.--.. |+||.|.+++.....++........+. ..+.
T Consensus 83 gv~vVYDVTn~----------ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi----e~FE 148 (198)
T KOG0079|consen 83 GVIVVYDVTNG----------ESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI----ELFE 148 (198)
T ss_pred eEEEEEECcch----------hhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc----hhee
Confidence 99999988632 2344454443333332111 899999998877665554443333222 3466
Q ss_pred EEccCCCCHHHHHHHHHhh
Q psy17315 249 IVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~ 267 (561)
.|++.+.+....|+-|++.
T Consensus 149 TSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQ 167 (198)
T ss_pred hhhhhcccchHHHHHHHHH
Confidence 7888888888887777765
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-07 Score=87.35 Aligned_cols=66 Identities=26% Similarity=0.239 Sum_probs=44.6
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccC------CCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFE------DDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~------~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
.+....+....+.++|.+|+|||+|+|.|.+.... ...++..+|||.....+... ..+.++||||+
T Consensus 119 ~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~~~DtPG~ 190 (190)
T cd01855 119 AIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-NGKKLYDTPGI 190 (190)
T ss_pred HHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-CCCEEEeCcCC
Confidence 33333445578999999999999999999986431 23455666776332233222 25789999995
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.5e-08 Score=96.05 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=42.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~~~el~l~Dt~Gi~ 303 (561)
....+++.|.||+|||+|.|.+.+. ....++....|| ..+.++ ...+.+++|.||||+-
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~--kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQ--KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCC--ccccccccccceeeeeeEEEecCceEEEEecCCccc
Confidence 3457999999999999999999998 444444433333 222333 3456789999999985
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.6e-07 Score=87.55 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcc-cCC---------------CcccccCccc--ccc----------CCeEEEEeCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAA-ENF---------------PFCTIDPNEN--NKV----------PAFLNVVDIA 149 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~-~~~---------------~~~T~~~~~~--~~~----------~~~i~l~Dtp 149 (561)
.|+++|.+++|||||+.+|......+ ... -|.|...... ... ...+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 58999999999999999997543111 111 1223222110 111 3468899999
Q ss_pred CcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 150 GLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 150 G~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
|..... ......++.+|++++|+|+.
T Consensus 82 G~~~f~-------~~~~~~l~~aD~~ilVvD~~ 107 (222)
T cd01885 82 GHVDFS-------SEVTAALRLCDGALVVVDAV 107 (222)
T ss_pred CccccH-------HHHHHHHHhcCeeEEEEECC
Confidence 986433 23455678999999999876
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-07 Score=97.29 Aligned_cols=119 Identities=31% Similarity=0.443 Sum_probs=85.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
...+.++|+||+|||||||++++...+.+++|| .|++|..++..+ .| .+++.+...... ++++.+.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF--~TIePN~Giv~v------~d-----~rl~~L~~~~~c-~~k~~~~ 67 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPF--CTIEPNVGVVYV------PD-----CRLDELAEIVKC-PPKIRPA 67 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCc--ccccCCeeEEec------Cc-----hHHHHHHHhcCC-CCcEEee
Confidence 457899999999999999999999888899999 678888764332 22 124444433321 2334344
Q ss_pred hhhhhhhhhhhhhhcc------------CCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhh
Q psy17315 324 YVSEVWFSFIYLFIKN------------GHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKL 379 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~------------~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~ 379 (561)
.++ +.||+|++.+ .+|+++|++.||++++++.+..|......+.+|+++++..
T Consensus 68 ~ve---~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~E 132 (372)
T COG0012 68 PVE---FVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTE 132 (372)
T ss_pred eeE---EEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHH
Confidence 433 3588999885 6899999999999999887788776666666777766644
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=83.63 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=23.8
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+...++..+.++|+.|+||||+..+|..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHH
Confidence 3455677899999999999999999974
|
|
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.9e-08 Score=84.57 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=87.2
Q ss_pred EEccCCCCHHHHHHHHHhhccCCCcccccCCc--cccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhh
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE--VNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt--~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~ 326 (561)
+.|.+++||+-|+-.+....|...+...+-|- -+.+.+..-....+++|||+| +++++.+...+++.+...+.-+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtag-qerfrsvt~ayyrda~alllly-- 78 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG-QERFRSVTHAYYRDADALLLLY-- 78 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccc-hHHHhhhhHhhhcccceeeeee--
Confidence 45667777776655544444433332211111 012222223335688999999 6778888877776554433322
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc---c
Q psy17315 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK---N 403 (561)
Q Consensus 327 ~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~---~ 403 (561)
.|.+......+..|+.+ +.++.. ....++++.||+|. .... .
T Consensus 79 --------------diankasfdn~~~wlse------------------i~ey~k-~~v~l~llgnk~d~--a~er~v~~ 123 (192)
T KOG0083|consen 79 --------------DIANKASFDNCQAWLSE------------------IHEYAK-EAVALMLLGNKCDL--AHERAVKR 123 (192)
T ss_pred --------------ecccchhHHHHHHHHHH------------------HHHHHH-hhHhHhhhcccccc--chhhcccc
Confidence 44555666777777665 333333 35667789999954 2211 1
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
+.-+++ ++.. +.|++.+||++|.+++...-...++.
T Consensus 124 ddg~kl---a~~y--~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 124 DDGEKL---AEAY--GIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred chHHHH---HHHH--CCCceeccccccccHhHHHHHHHHHH
Confidence 122333 2333 78999999999999877654444443
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-06 Score=77.33 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=99.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..++.++|..++||+++++..+...|....--.+ |+ |-. +++.. ....+.+|||+| ++.++-+.+.++++++..
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktI-gv-dflerqi~v~~Edvr~mlWdtag-qeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI-GV-DFLERQIKVLIEDVRSMLWDTAG-QEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcccccccccccc-ch-hhhhHHHHhhHHHHHHHHHHhcc-chhHHHHHHHHhccccce
Confidence 3578999999999999999999987765543222 22 222 33433 335688999999 555888888888887654
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
...+ +.++...++.+.+|.+. +.... ...|.++|-||+ |+++
T Consensus 97 vLVF----------------STTDr~SFea~~~w~~k------------------v~~e~--~~IPtV~vqNKI--Dlve 138 (246)
T KOG4252|consen 97 VLVF----------------STTDRYSFEATLEWYNK------------------VQKET--ERIPTVFVQNKI--DLVE 138 (246)
T ss_pred EEEE----------------ecccHHHHHHHHHHHHH------------------HHHHh--ccCCeEEeeccc--hhhH
Confidence 3333 22334555555555443 11111 478999999999 5554
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
+..-...+++..++.. +...+-+|++...++.....-.++.+.
T Consensus 139 ds~~~~~evE~lak~l--~~RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 139 DSQMDKGEVEGLAKKL--HKRLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhcchHHHHHHHHHh--hhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 3322223333333222 456788899999998776544444443
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.1e-07 Score=86.86 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCccc----CC---------------CcccccCcccc-------ccCCeEEEEeCCCc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAE----NF---------------PFCTIDPNENN-------KVPAFLNVVDIAGL 151 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~----~~---------------~~~T~~~~~~~-------~~~~~i~l~DtpG~ 151 (561)
+|+++|.+++|||||+++|+....... .. .|+|....... .....+.++||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986541111 01 12222211100 01246899999998
Q ss_pred ccCCccccccccccccccccCCEEEEEeccc
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.... ......++.+|++++|+|+.
T Consensus 82 ~~f~-------~~~~~~~~~aD~~llVvD~~ 105 (213)
T cd04167 82 VNFM-------DEVAAALRLSDGVVLVVDVV 105 (213)
T ss_pred cchH-------HHHHHHHHhCCEEEEEEECC
Confidence 6432 22345578899999999875
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=84.70 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=81.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..++.+.|.+|+||++|++.+....+.....+. .|. ..... ........+.+|||+|.. .+..+...+.......+
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~i~i~~~Dt~g~~-~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPT-LGVEVHPLKFYTNCGPICFNVWDTAGQE-KFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-cceEEEEEEEEECCeEEEEEEEECCCch-hhhhhhHHHhccCCEEE
Confidence 468999999999999999765554433222222 121 10000 001122467889999953 34444433332222211
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+...+..+..|+.. +.... ...|+++++||+|.. +
T Consensus 87 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~~i~lv~nK~Dl~--~- 127 (215)
T PTZ00132 87 IMF----------------DVTSRITYKNVPNWHRD------------------IVRVC--ENIPIVLVGNKVDVK--D- 127 (215)
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccCc--c-
Confidence 111 22333444433333322 11111 368999999999542 1
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+ ..++.... +..++.+||+++.|++++.....+..
T Consensus 128 ~~~~~~-~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 128 RQVKAR-QITFHRKK--NLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred ccCCHH-HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111112 22333332 56789999999999877655554443
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-07 Score=100.30 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=33.6
Q ss_pred CceEEEecCChhhhhhhc----cchHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCH
Q psy17315 385 KTQIYLVNLSAKDYIKKK----NKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 385 kP~iiv~NK~D~d~~~~~----~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~ 438 (561)
+|+++|+||+|. .... ....+++.+++.... ...+++++||++|.|+.++.+
T Consensus 140 ~~iivviNK~Dl--~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 140 NQLIVAINKMDA--VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred CeEEEEEEcccc--ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 579999999954 2211 122345555544321 125799999999999998754
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=88.40 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=37.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccC--------CCccc-ccCcccc-cc---CCeEEEEeCCCcccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAEN--------FPFCT-IDPNENN-KV---PAFLNVVDIAGLVKG 154 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~--------~~~~T-~~~~~~~-~~---~~~i~l~DtpG~~~~ 154 (561)
.++|+++|.+|+|||||+|+|.+.. ..... .+.++ ....... .. ...+.++||||+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 4689999999999999999999877 22221 12211 1111111 11 135899999998643
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.1e-07 Score=78.68 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=97.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..+++.++|.-|+||+|+.-.|--.. ..+-|.+|...+..+. ..-.+.++|.-|..+-++ -+.-+..+.|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y--KNLk~~vwdLggqtSirP-------yWRcYy~dt~ 87 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY--KNLKFQVWDLGGQTSIRP-------YWRCYYADTD 87 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc--ccccceeeEccCcccccH-------HHHHHhcccc
Confidence 56899999999999999988775444 5566666666554443 334588999988754332 2334457889
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHH-HHHHHhcc-hhhccccccCcCCCCCccHHH-HHHHhhhcCCCcEEEEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLE-TRIRDLRR-SVDAKADSKKKMGPKKTDEGE-KKMLLGRVGTNLKVGIV 250 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~-~v~NK~D~~~~~~~~~~~~~~-l~~l~~~~~~~~~i~is 250 (561)
++++|||+++++..-.+..... ..+. ++|..-.. .++||.|...+....+..... +..+.. +.+..+..|
T Consensus 88 avIyVVDssd~dris~a~~el~-----~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~--r~~~Iv~tS 160 (182)
T KOG0072|consen 88 AVIYVVDSSDRDRISIAGVELY-----SMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD--RIWQIVKTS 160 (182)
T ss_pred eEEEEEeccchhhhhhhHHHHH-----HHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh--heeEEEeec
Confidence 9999999986543211111110 1111 12222111 189999998554322111111 222222 346778999
Q ss_pred ccCCCCHHHHHHHHHhhc
Q psy17315 251 GVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~~ 268 (561)
|.+|+|++..++||.+..
T Consensus 161 A~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred cccccCCcHHHHHHHHHH
Confidence 999999999999998753
|
|
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-07 Score=92.01 Aligned_cols=126 Identities=33% Similarity=0.454 Sum_probs=93.1
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCC
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
+....+...+.++|++|+|||++||.|++.....+++|+ .|+||.+. ++.+.| ++++.+.+.|. +
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF--~TIdPn~a------~V~v~d-----~Rfd~l~~~Y~--~ 78 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPF--CTIDPNEA------RVEVPD-----SRFDLLCPIYG--P 78 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCc--ceeccccc------eeecCc-----hHHHHHHHhcC--C
Confidence 444566789999999999999999999999877888888 78888864 122222 33455555543 3
Q ss_pred ccccchhhhhhhhhhhhhhhcc------------CCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKN------------GHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL 381 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~------------~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~ 381 (561)
+.....+|+ ..||+|++.+ ++|+.+|.+.+|++++++.|..|......+-.|++++.....
T Consensus 79 ~~~vpa~l~---v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~ 151 (391)
T KOG1491|consen 79 KSKVPAFLT---VYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELR 151 (391)
T ss_pred cceeeeeEE---EEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHH
Confidence 444455543 3478888885 689999999999999998888887777777788887776544
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-06 Score=80.29 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC------CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS------AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~------~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l 166 (561)
..+.|+|+|+-|+||||++-++.... ..++.. -.|...+.+. .....+.+||.-|.-..+ .-+-
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~lr-------Slw~ 87 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQESLR-------SLWK 87 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHHHH-------HHHH
Confidence 44779999999999999999886432 111111 1222222221 124568899998874333 2334
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--hhccccccCcCCCCCccHHHHHHHhh---h-
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS--VDAKADSKKKMGPKKTDEGEKKMLLG---R- 240 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--v~NK~D~~~~~~~~~~~~~~l~~l~~---~- 240 (561)
.....|++|++|+|++.++....+.....- ...++..+-... .+||.|+....+ ..+++...+ .
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~-----v~~~E~leg~p~L~lankqd~q~~~~-----~~El~~~~~~~e~~ 157 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEK-----VVENEKLEGAPVLVLANKQDLQNAME-----AAELDGVFGLAELI 157 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHH-----HHHHHHhcCCchhhhcchhhhhhhhh-----HHHHHHHhhhhhhc
Confidence 456778999999999865533322222110 111222221111 789999885433 233333332 1
Q ss_pred -cCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 241 -VGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 241 -~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
-+..+..++||.+|.|+..-+.|+.+...
T Consensus 158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred CCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 14567899999999999999999988753
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.3e-06 Score=76.02 Aligned_cols=150 Identities=14% Similarity=0.107 Sum_probs=96.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc---cc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN---NK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~---~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.+..+||-+.||||+|+...|..+ +..+ -|.+..+.... .. ....++||||+|.....+- ...+.|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtagqerfrsi-------tksyyr 80 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI-------TKSYYR 80 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH-------HHHHhh
Confidence 578899999999999999999776 3333 23333332221 11 1236899999998655531 234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHH-HHhcch-------hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRI-RDLRRS-------VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~-------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
++-.++.|.|.+. ...++.+..+-++. +...-+ |+.|+|+......+....+.+.....
T Consensus 81 nsvgvllvyditn----------r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg--- 147 (213)
T KOG0091|consen 81 NSVGVLLVYDITN----------RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG--- 147 (213)
T ss_pred cccceEEEEeccc----------hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC---
Confidence 8888999998763 22445554433332 222212 88999998555544333333333322
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..-|..|+++|+++.+-+..|++..
T Consensus 148 -M~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 148 -MAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred -ceEEEecccCCCcHHHHHHHHHHHH
Confidence 2568999999999999999998864
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.9e-07 Score=102.89 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+.|..++|||||++.|....
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHh
Confidence 44679999999999999999998763
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-06 Score=87.90 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=94.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC---------------CcccCCCcccccCccc--cccC---CeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS---------------AAAENFPFCTIDPNEN--NKVP---AFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~---------------~~~~~~~~~T~~~~~~--~~~~---~~i~l~DtpG~~~~~~ 156 (561)
..++||-.--=|||||.-+|.... ..+...-|.|...++. .+.+ .-+.+|||||.+....
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 358888888899999999986422 1234456777766554 2233 4688999999986653
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--chhhccccccCcCCCCCccHHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RSVDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~v~NK~D~~~~~~~~~~~~~~l 234 (561)
+ .-..+..||.+++|||+...-.. ..+-.+...+..-. .+|.||+|++.+ +.+..
T Consensus 141 E-------VsRslaac~G~lLvVDA~qGvqA----------QT~anf~lAfe~~L~iIpVlNKIDlp~a------dpe~V 197 (650)
T KOG0462|consen 141 E-------VSRSLAACDGALLVVDASQGVQA----------QTVANFYLAFEAGLAIIPVLNKIDLPSA------DPERV 197 (650)
T ss_pred e-------ehehhhhcCceEEEEEcCcCchH----------HHHHHHHHHHHcCCeEEEeeeccCCCCC------CHHHH
Confidence 2 23345678999999998631100 00111111111111 129999999843 33333
Q ss_pred HH-Hhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KM-LLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~-l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.. +.+. .+....|.+||++|-|.++++.++.++.
T Consensus 198 ~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 198 ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 22 2222 2455789999999999999999999984
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-07 Score=90.23 Aligned_cols=26 Identities=38% Similarity=0.695 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
++.++|..++||++|++.++...+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 36789999999999999999765543
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.7e-07 Score=101.22 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=78.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.|.+.|..++|||+|+++|++............|.+ +... .+.. .+..+.+|||||.++.... +..+...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~----m~~g~~~--- 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN----MLAGVGG--- 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH----HHHHhhc---
Confidence 588999999999999999987421111000111222 1110 1111 1345789999996443222 1111110
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCc-eEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT-QIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP-~iiv~NK~D~d~~~~ 401 (561)
+|.+..|++.- ..+.....+.+..... .+.| +++|+||+|. .+.
T Consensus 75 ----------------------~D~~lLVVda~----------eg~~~qT~ehl~il~~-lgi~~iIVVlNKiDl--v~~ 119 (614)
T PRK10512 75 ----------------------IDHALLVVACD----------DGVMAQTREHLAILQL-TGNPMLTVALTKADR--VDE 119 (614)
T ss_pred ----------------------CCEEEEEEECC----------CCCcHHHHHHHHHHHH-cCCCeEEEEEECCcc--CCH
Confidence 12222222210 0122333333333322 3456 5799999954 321
Q ss_pred --ccchHHHHHHHHHhc-CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 --KNKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 --~~~~~~~l~~~~~~~-~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+++.+++... ..+.+++++||++|.|+++|.+..
T Consensus 120 ~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L 161 (614)
T PRK10512 120 ARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHL 161 (614)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHH
Confidence 112334555554432 124689999999999998886554
|
|
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.7e-06 Score=79.97 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=91.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+|.++|.+|||||+|...+.+.... ..+..+.-+.... ......+.++||+|..+.. .+. ...++.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~----~~~---~~~~~~ 74 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS----AMR---DLYIRN 74 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEECCEEEEEEEEcCCCcccCh----HHH---HHhhcc
Confidence 468999999999999999998876521 1122222111110 1122357899999943222 121 234678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|..+.|++.+ ....|+.+..+.+++...... |+||+|+.............+ .....-
T Consensus 75 ~~gF~lVysit----------d~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l----a~~~~~ 140 (196)
T KOG0395|consen 75 GDGFLLVYSIT----------DRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL----ARSWGC 140 (196)
T ss_pred CcEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH----HHhcCC
Confidence 89999999554 334555555555555332221 999999986533332221222 222222
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.-+.+|++.+.+++.+|..|...
T Consensus 141 ~f~E~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 141 AFIETSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred cEEEeeccCCcCHHHHHHHHHHH
Confidence 47899999999999999999885
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.2e-07 Score=88.53 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=42.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-ch-hhhhHhhhcccHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DI-EIINEELRLKDVEHIEKE 305 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~-~~~~~el~l~Dt~Gi~~~ 305 (561)
...+.+.|.||+|||+|+|+|.+. +...++.++.+++|.. .. ...+.-+.+|||||+...
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~--~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQG--EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhc--cCceeeecccCCCchhhHHhhccccceEEecCCCcccc
Confidence 345669999999999999999976 4455555554455543 22 233466999999998763
|
|
| >PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.4e-07 Score=70.97 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=48.6
Q ss_pred eccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEE
Q psy17315 469 YFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 548 (561)
Q Consensus 469 ~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~ 548 (561)
.+|+. .+..+. +++|+|+.|+|..||+++++.|+.|.|++ ++++.+|.++|||+|+|.
T Consensus 2 ~v~lp-dG~~~~--~~~g~T~~d~A~~I~~~l~~~~~~A~Vng-------------------~~vdl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 2 RVYLP-DGSIKE--LPEGSTVLDVAYSIHSSLAKRAVAAKVNG-------------------QLVDLDHPLEDGDVVEII 59 (60)
T ss_dssp EEEET-TSCEEE--EETTBBHHHHHHHHSHHHHHCEEEEEETT-------------------EEEETTSBB-SSEEEEEE
T ss_pred EEECC-CCCeee--CCCCCCHHHHHHHHCHHHHhheeEEEEcC-------------------EECCCCCCcCCCCEEEEE
Confidence 45663 356655 99999999999999999999999999653 889999999999999984
|
The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A .... |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.3e-07 Score=99.97 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=34.6
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.+.|+++|+||+|..... .....+++.+.+.. +..+++++||++|.|+.+|.+...
T Consensus 121 ~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~--~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 121 NDLEIIPVINKIDLPSAD-PERVKKEIEEVIGL--DASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred cCCCEEEEEECcCCCccC-HHHHHHHHHHHhCC--CcceEEEeeccCCCCHHHHHHHHH
Confidence 468999999999642111 11222344433321 123589999999999988765543
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-06 Score=88.57 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhh
Q psy17315 372 DIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 430 (561)
Q Consensus 372 e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~ 430 (561)
+...+..... ..+|+++++||+|....+ ....++.+++.+... +...++|+||..+
T Consensus 105 t~~~~~~~~~-~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~-~~~~~~Pisa~~~ 160 (270)
T cd01886 105 TETVWRQADR-YNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGAN-PVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHHHH-cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCC-ceEEEeccccCCC
Confidence 3344443332 579999999999643211 233456666665443 3456789998643
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.9e-07 Score=85.22 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=82.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
....+|.+.|..|+||+++++.+....+. .+.++.|.. +..+...+..+.+||++| +..+..+++.+......+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~--~~~pT~g~~--~~~i~~~~~~~~~~d~gG-~~~~~~~w~~y~~~~~~i- 85 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS--ETIPTIGFN--IEEIKYKGYSLTIWDLGG-QESFRPLWKSYFQNADGI- 85 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE--EEEEESSEE--EEEEEETTEEEEEEEESS-SGGGGGGGGGGHTTESEE-
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc--ccCcccccc--cceeeeCcEEEEEEeccc-cccccccceeecccccee-
Confidence 34578999999999999999999865322 222222321 123444566789999999 333444555544322221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
+..++++| .+.+.... ++...+-.......+|+++++||.|...
T Consensus 86 ---IfVvDssd------------~~~l~e~~------------------~~L~~ll~~~~~~~~piLIl~NK~D~~~--- 129 (175)
T PF00025_consen 86 ---IFVVDSSD------------PERLQEAK------------------EELKELLNDPELKDIPILILANKQDLPD--- 129 (175)
T ss_dssp ---EEEEETTG------------GGGHHHHH------------------HHHHHHHTSGGGTTSEEEEEEESTTSTT---
T ss_pred ---EEEEeccc------------ceeecccc------------------cchhhhcchhhcccceEEEEeccccccC---
Confidence 22222221 01111111 1111121112235799999999996422
Q ss_pred ccchHHHHHHHHHh--c--CCCCeEEeechhhhhhhCCC
Q psy17315 402 KNKWLPKIKEWVDA--N--DPGATIIPFSGVFEHQLVDM 436 (561)
Q Consensus 402 ~~~~~~~l~~~~~~--~--~~~~~vi~iSA~~~~gl~~L 436 (561)
....+++.+.+.. . .....++.+||.+|.|+.+.
T Consensus 130 -~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 130 -AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp -SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred -cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 1223444443321 1 12456899999999997554
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-06 Score=94.15 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC---CcccCCC------cccccCccc---------------cccCCeEEEEeCCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS---AAAENFP------FCTIDPNEN---------------NKVPAFLNVVDIAG 150 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~------~~T~~~~~~---------------~~~~~~i~l~DtpG 150 (561)
...+++++|.+|+|||||+++|.... ...+... .++.+.... .+.+..+.++||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 34579999999999999999985321 1111111 112211110 12345789999999
Q ss_pred cccCCccccccccccccccccCCEEEEEeccc
Q psy17315 151 LVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
..... ......++.+|++++|+|++
T Consensus 90 ~~df~-------~~~~~~l~~aD~aIlVvDa~ 114 (527)
T TIGR00503 90 HEDFS-------EDTYRTLTAVDNCLMVIDAA 114 (527)
T ss_pred hhhHH-------HHHHHHHHhCCEEEEEEECC
Confidence 84222 22355678899999999986
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-06 Score=95.65 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=47.5
Q ss_pred EEcCCCCHHHHHHHHhcCC---CcccC---------------CCcccccCccc--cccCCeEEEEeCCCcccCCcccccc
Q psy17315 102 VGVPNVGKSTFFNVLTKSS---AAAEN---------------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGL 161 (561)
Q Consensus 102 vG~pnvGKStlin~L~~~~---~~~~~---------------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~ 161 (561)
+|.+|+|||||+++|.... ...+. ..|.|...... .+.+..+.++||||.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~------ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT------ 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH------
Confidence 5899999999999995432 11111 12333322111 2335579999999985321
Q ss_pred ccccccccccCCEEEEEecccc
Q psy17315 162 GNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 162 ~~~~l~~i~~~D~il~VvD~~~ 183 (561)
......++.+|++++|+|++.
T Consensus 75 -~~~~~~l~~aD~vllvvd~~~ 95 (668)
T PRK12740 75 -GEVERALRVLDGAVVVVCAVG 95 (668)
T ss_pred -HHHHHHHHHhCeEEEEEeCCC
Confidence 123455688999999999863
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-06 Score=84.86 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=46.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--Ccc-cCCCcccccCccccccCCeEEEEeCCCcc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAA-ENFPFCTIDPNENNKVPAFLNVVDIAGLV 152 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~-~~~~~~T~~~~~~~~~~~~i~l~DtpG~~ 152 (561)
..+.+++.|.+|||||||+|.++..+ ..+ +..+|.|+..+. ...+..++++|.||+-
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~-f~v~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH-FHVGKSWYEVDLPGYG 194 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee-eeccceEEEEecCCcc
Confidence 45789999999999999999999877 333 348999988665 5667789999999953
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-06 Score=87.23 Aligned_cols=151 Identities=17% Similarity=0.096 Sum_probs=96.4
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
.++++-|-|+|.--=|||||+.+|.+.....+...|.|.+.-.. ...+..|.|+||||...+.. |. ..-.
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a----MR---aRGA 222 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA----MR---ARGA 222 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH----HH---hccC
Confidence 34677899999999999999999999887667778888764221 22456899999999753331 10 1112
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh------
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR------ 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~------ 240 (561)
.-+|++++||.+.+.- -....+.+. ....-..+ ..||||++++ ..+....+|+..
T Consensus 223 ~vtDIvVLVVAadDGV-------mpQT~EaIk----hAk~A~VpiVvAinKiDkp~a-----~pekv~~eL~~~gi~~E~ 286 (683)
T KOG1145|consen 223 NVTDIVVLVVAADDGV-------MPQTLEAIK----HAKSANVPIVVAINKIDKPGA-----NPEKVKRELLSQGIVVED 286 (683)
T ss_pred ccccEEEEEEEccCCc-------cHhHHHHHH----HHHhcCCCEEEEEeccCCCCC-----CHHHHHHHHHHcCccHHH
Confidence 4469999999543210 001111111 11111122 6899998732 233334454433
Q ss_pred -cCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 241 -VGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 241 -~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
-+.-..|++|+++|.|+..|..++.-
T Consensus 287 ~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 287 LGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred cCCceeEEEeecccCCChHHHHHHHHH
Confidence 24557899999999999999888754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 561 | ||||
| 2ohf_A | 396 | Crystal Structure Of Human Ola1 In Complex With Amp | 1e-84 | ||
| 1ni3_A | 392 | Structure Of The Schizosaccharomyces Pombe Ychf Gtp | 1e-57 | ||
| 1jal_A | 363 | Ychf Protein (Hi0393) Length = 363 | 2e-37 | ||
| 2dwq_A | 368 | Thermus Thermophilus Ychf Gtp-Binding Protein Lengt | 1e-32 | ||
| 2dby_A | 368 | Crystal Structure Of The Gtp-Binding Protein Ychf I | 2e-32 | ||
| 1udx_A | 416 | Crystal Structure Of The Conserved Protein Tt1381 F | 6e-12 | ||
| 1wxq_A | 397 | Crystal Structure Of Gtp Binding Protein From Pyroc | 3e-11 | ||
| 1lnz_A | 342 | Structure Of The Obg Gtp-Binding Protein Length = 3 | 6e-10 | ||
| 4a9a_A | 376 | Structure Of Rbg1 In Complex With Tma46 Dfrp Domain | 3e-06 |
| >pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp Length = 396 | Back alignment and structure |
|
| >pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase Length = 392 | Back alignment and structure |
|
| >pdb|1JAL|A Chain A, Ychf Protein (Hi0393) Length = 363 | Back alignment and structure |
|
| >pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein Length = 368 | Back alignment and structure |
|
| >pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In Complexed With Gdp Length = 368 | Back alignment and structure |
|
| >pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From Thermus Thermophilus Hb8 Length = 416 | Back alignment and structure |
|
| >pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus Horikoshii Ot3 Length = 397 | Back alignment and structure |
|
| >pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein Length = 342 | Back alignment and structure |
|
| >pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain Length = 376 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 414 bits (1068), Expect = e-142
Identities = 180/296 (60%), Positives = 216/296 (72%), Gaps = 26/296 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR-GDKKLKPEYV 325
RAFEDDD+THVEG V+P+RDIEII+EEL+LKD E I I+K+EK+ R GDKKLKPEY
Sbjct: 125 RAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR-YGDWSNADIEHLNKLNLLTA 384
D + K+K++V + K+ R Y DW++ +IE LNK LT+
Sbjct: 184 --------------------DIMCKVKSWVID-QKKPVRFYHDWNDKEIEVLNKHLFLTS 222
Query: 385 KTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444
K +YLVNLS KDYI+KKNKWL KIKEWVD DPGA +IPFSG E +L ++ +ERQ+Y
Sbjct: 223 KPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKY 282
Query: 445 LDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGF 504
L+ S L KII G+ +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGF
Sbjct: 283 LEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGF 342
Query: 505 IMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
IMAEVM ++DFKE GSE A +AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 343 IMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQ--PKKK 396
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 1e-55
Identities = 81/124 (65%), Positives = 90/124 (72%), Gaps = 20/124 (16%)
Query: 76 MGPKKTDEGEK-KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN 134
M PKK +G K ++GR GT+LK+GIVG+PNVGKSTFFNVLT S A+AENFPFCTIDPN
Sbjct: 1 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN 60
Query: 135 E-------------------NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175
E +K+PAFLNVVDIAGLVKGA GQGLGNAFLSHISACD I
Sbjct: 61 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI 120
Query: 176 FHLC 179
FHL
Sbjct: 121 FHLT 124
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 3e-16
Identities = 29/44 (65%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 224 MGPKKTDEGEK-KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266
M PKK +G K ++GR GT+LK+GIVG+PNVGKSTFFNVLT
Sbjct: 1 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTN 44
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Length = 392 | Back alignment and structure |
|---|
Score = 404 bits (1042), Expect = e-138
Identities = 128/289 (44%), Positives = 182/289 (62%), Gaps = 27/289 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGD-----KKLK 321
RAF+D ++ HVEG+V+P+RD+ II +EL +KD E +EK + + K+ RG K K
Sbjct: 124 RAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKK 183
Query: 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL 381
E + K+ ++ E K+ R GDWSN ++E +N L L
Sbjct: 184 EEQ---------------------AIIEKVYQYLTET-KQPIRKGDWSNREVEIINSLYL 221
Query: 382 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441
LTAK IYLVN+S +D++++KNK+LPKIK+W+D N PG T+IP S FE +L + ++E
Sbjct: 222 LTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEA 281
Query: 442 QRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFE 501
+ S+L KII GY +L L +FT G+DEV++WTI+KGTKAPQAAG IHTDFE
Sbjct: 282 IEECKKLNTKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFE 341
Query: 502 KGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550
K F++ E+MH+ D ++ +E ACRAAGKY +G+ Y +E GDI +K
Sbjct: 342 KAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKAG 390
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Length = 392 | Back alignment and structure |
|---|
Score = 186 bits (476), Expect = 6e-54
Identities = 63/124 (50%), Positives = 74/124 (59%), Gaps = 21/124 (16%)
Query: 76 MGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPN 134
M PKK E K+ GR G NLK GIVG+PNVGKSTFF +TKS N+P+ TIDP
Sbjct: 1 MPPKKQQE-VVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE 59
Query: 135 E-------------------NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175
E ++VPAFL V DIAGL KGA+ G GLGNAFLSH+ A DAI
Sbjct: 60 EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAI 119
Query: 176 FHLC 179
+ +
Sbjct: 120 YQVV 123
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Length = 392 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 2e-16
Identities = 27/43 (62%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 224 MGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266
M PKK E K+ GR G NLK GIVG+PNVGKSTFF +TK
Sbjct: 1 MPPKKQQE-VVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITK 42
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Length = 363 | Back alignment and structure |
|---|
Score = 302 bits (777), Expect = 1e-98
Identities = 95/285 (33%), Positives = 155/285 (54%), Gaps = 28/285 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R FE+DD+ HV G+++P+ DI+ IN EL L D++ E+ I +++K + GDK+ K E
Sbjct: 105 RCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL-- 162
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+ KI + R +++ + N LT K
Sbjct: 163 -------------------SVMEKILPVLENA--GMIRSVGLDKEELQAIKSYNFLTLKP 201
Query: 387 QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446
+Y+ N++ + + N +L +++E A GA ++P E ++ ++ D+E+ +L
Sbjct: 202 TMYIANVNEDGF--ENNPYLDRVREI--AAKEGAVVVPVCAAIESEIAELDDEEKVEFLQ 257
Query: 447 EQKAT-SVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+ L+++I GY L LQ +FTAG EV+AWT+ G AP+AA IHTDFEKGFI
Sbjct: 258 DLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFI 317
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550
AEV+ ++DF + E + AGK+R +G+ Y V+DGD++ F+FN
Sbjct: 318 RAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFN 362
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Length = 363 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-38
Identities = 48/100 (48%), Positives = 59/100 (59%), Gaps = 19/100 (19%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-------------------NN 137
K GIVG+PNVGKST FN LTK+ A N+PFCTI+PN
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
+P + VDIAGLV GA++G+GLGN FL++I DAI H
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH 102
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Length = 363 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 5e-07
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
K GIVG+PNVGKST FN LTK
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTK 24
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Length = 368 | Back alignment and structure |
|---|
Score = 298 bits (766), Expect = 6e-97
Identities = 97/287 (33%), Positives = 150/287 (52%), Gaps = 28/287 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R F D DV HV G V+P+ D E++ EL L D+ +E+ + ++ K R D++ P
Sbjct: 108 RCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEA-RADRERLPLL-- 164
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+A + + EG + AR S A L + LLTAK
Sbjct: 165 -------------------EAAEGLYVHLQEG--KPARTFPPSEAVARFLKETPLLTAKP 203
Query: 387 QIYLVNLSAKDYI-KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IY+ N++ +D + N + ++ A + GA ++ S E +L ++ +E + L
Sbjct: 204 VIYVANVAEEDLPDGRGNPQVEAVRRK--ALEEGAEVVVVSARLEAELAELSGEEARELL 261
Query: 446 DEQKAT-SVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGF 504
S L ++ GY++L L FFTAG+ EV+AWT+++GTKAP+AAG IH+D E+GF
Sbjct: 262 AAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGF 321
Query: 505 IMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
I AEV+ +D E G A + G R +G+ Y V+DGD+I+ FNA
Sbjct: 322 IRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Length = 368 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-37
Identities = 50/104 (48%), Positives = 59/104 (56%), Gaps = 23/104 (22%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN---------------------- 134
L VGIVG+PNVGKST FN LT+++A A N+PF TID N
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 135 -ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
VP + VDIAGLVKGA +G+GLGN FL+HI AI H
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAH 105
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Length = 368 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
L VGIVG+PNVGKST FN LT+
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTR 23
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Length = 397 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 4e-53
Identities = 50/320 (15%), Positives = 88/320 (27%), Gaps = 76/320 (23%)
Query: 267 RAFEDDDVT-HVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325
A D +PV DIE + E+ + K +K K ++ KL+
Sbjct: 110 DATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIA 169
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
+ + + +A WS D+ K
Sbjct: 170 EH----LSGIGVNENDVW--------EAMHKLNLP--EDPTKWSQDDLLAFASEIRRVNK 215
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY- 444
+ N + ++ + ++ + G +IP S E L Y
Sbjct: 216 PMVIAANKADAA----SDEQIKRLVR--EEEKRGYIVIPTSAAAELTLRKAAKAGFIEYI 269
Query: 445 ---------------------------LDEQKATSVLDKIITQGYKSLQLQYFFTA---- 473
LD +T V + I + L+L +
Sbjct: 270 PGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDEN 329
Query: 474 ------GQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAA 527
G + ++KG+ A ++HTD KGF+ A A
Sbjct: 330 KLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI-----------------NA 372
Query: 528 GKYRQQGRAYTVEDGDIIFF 547
R+ G Y ++ DI+
Sbjct: 373 RTKRRVGEDYELQFNDIVKI 392
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Length = 397 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 9e-36
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 26/107 (24%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN---------------------- 134
+++G+VG PNVGKSTFF+ T N+PF TI+ N
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 135 ----ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
N + +VD+AGLV GA EG+GLGN FL + A+ H
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIH 107
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Length = 397 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
+++G+VG PNVGKSTFF+ T
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATL 22
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 27/111 (24%)
Query: 83 EGEKKMLLGRVGTNLK----VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK 138
G+++ ++ LK VG+VG P+VGKST +V++ + ++ F T+ PN
Sbjct: 145 PGKERYIVLE----LKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN---- 196
Query: 139 VPAFLNVV-----------DIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
L +V D+ GL++GA +G GLG+ FL HI I H+
Sbjct: 197 ----LGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHV 243
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 8e-16
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 27/95 (28%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAA----AENFPFCTIDPNENNKVPAFLNVV-------- 146
VG+VG PN GKS+ + + A A +PF T+ PN L VV
Sbjct: 160 VGLVGYPNAGKSSLLAAM---TRAHPKIA-PYPFTTLSPN--------LGVVEVSEEERF 207
Query: 147 ---DIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
DI G+++GA+EG+GLG FL HI+ + ++
Sbjct: 208 TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYV 242
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLN--VVDIAGLVKGAA 156
+ + G PNVGKS+F N++++++ +++ F T + + ++D GL+ A
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91
Query: 157 EGQGLGN----AFLSHISAC 172
E + L+HI+
Sbjct: 92 ENRNTIEMTTITALAHINGV 111
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 5e-11
Identities = 89/601 (14%), Positives = 155/601 (25%), Gaps = 211/601 (35%)
Query: 25 YESTNPKIPRSNQILISDKPTWGDGDG-PKAPKRRKQHLSDKLRPKADSKKKMGPKKTDE 83
E P + I D+ + D K R Q KLR
Sbjct: 100 TEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPY-LKLR---------------- 141
Query: 84 GEKKMLLG-RVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAE----NFPF---------C 129
+ LL R N V I GV GK+ + + F C
Sbjct: 142 ---QALLELRPAKN--VLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 130 TIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFF- 188
+ L +D + H S H + +LR +
Sbjct: 193 NSPETVLEMLQKLLYQID------------PNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 189 ----ISL------NTITIWR--NLK---LLETRIRDLRRSVDAKADSKKKMGPKKT--DE 231
L W NL LL TR + + + A + +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 232 GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN 291
E K LL + + + D+ NP R + II
Sbjct: 301 DEVKSLLLKY-LDCRP------------------------QDLPREVLTTNPRR-LSIIA 334
Query: 292 EELRLKDVEHIE--KEIN--KIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDA 347
E +R + + K +N K+ +++ L+P +++ +F +
Sbjct: 335 ESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPS-------- 384
Query: 348 LVKIKAFVCEGDKRHARYGDWSNAD-------IEHLNKLNLL---TAKTQIYLVNLSAKD 397
I + W + + L+K +L+ ++ I + ++
Sbjct: 385 -AHIPTILLS------LI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---- 431
Query: 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQ-LVDMPDDERQRYLDEQKATSVLDK 456
Y++ K K N+ H+ +VD + + + + LD
Sbjct: 432 YLELKVK---------LENEYAL----------HRSIVDH-YNIPKTFDSDDLIPPYLD- 470
Query: 457 IITQGYKSLQLQYFF--------TAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAE 508
QYF+ E + T + DF F+ +
Sbjct: 471 -----------QYFYSHIGHHLKNIEHPE-------RMTLFR----MVFLDF--RFLEQK 506
Query: 509 VMHFDDFKEHGSEAACRAAG----------KYRQ----QGRAYTVEDGDIIFFKFNAGAG 554
+ H A A+G Y+ Y I+ F
Sbjct: 507 IRH--------DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 555 L 555
L
Sbjct: 559 L 559
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLN--VVDIAGLVKGAA 156
V I G PNVGKST LT + ++PF T N + ++D GL+
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 157 EGQGLG--NAFLSHISACDAIFHL 178
+ A L+ + I ++
Sbjct: 230 SERNEIEKQAILALRYLGNLIIYI 253
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 26/115 (22%)
Query: 27 STNPKIPRSNQILISDKPTW--------GDGDGPKAPKRRKQHLSDKLRP--KADSKKKM 76
S NP I ++ +KP D ++ K+H ++ +S
Sbjct: 39 SRNPMIED----ILKNKPRIMLLNKADKAD---AAVTQQWKEHFENQGIRSLSINSVNGQ 91
Query: 77 GPKK---------TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA 122
G + ++ ++ G ++ I+G+PNVGKST N L K + A
Sbjct: 92 GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA 146
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 222 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
K++ +K D K G ++ I+G+PNVGKST N L K+
Sbjct: 101 KEILQEKFDRMRAK---GVKPRAIRALIIGIPNVGKSTLINRLAKK 143
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP 133
+GIVG N GK++ FN LT + + F T+ P
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKR 267
KV IVG PNVGKS+ FN L K+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKK 24
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 1e-05
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAA 122
KV IVG PNVGKS+ FN L K +A
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSA 27
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
+ G NVGKST LT P T E
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE 40
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKR 267
+ G NVGKST LT +
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGK 24
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 86 KKMLLGRVGTN--LKVGIVGVPNVGKSTFFNVLTKSSAA 122
+K+LL ++ + +V IVGVPN GKST N L A+
Sbjct: 87 RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRAS 125
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 234 KKMLLGRVGTN--LKVGIVGVPNVGKSTFFNVLTKR 267
+K+LL ++ + +V IVGVPN GKST N L +
Sbjct: 87 RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGK 122
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G+ ++ ++G PN GK++ FN++T + N+P T++
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 242 GTNLKVGIVGVPNVGKSTFFNVLT 265
G+ ++ ++G PN GK++ FN++T
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLIT 24
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 9e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
+ ++ ++G PNVGKST FN LT + N+P T++
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE 39
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 4e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLT 265
+ ++ ++G PNVGKST FN LT
Sbjct: 3 SYEIALIGNPNVGKSTIFNALT 24
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
+ ++ ++G PNVGKST FN LT + N+P T++
Sbjct: 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE 43
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLT 265
+ ++ ++G PNVGKST FN LT
Sbjct: 7 SYEIALIGNPNVGKSTIFNALT 28
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 197 WRNLKLLETRIRDLRRSVDAKA------DSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIV 250
L +R + + + K +G K E + R V +V
Sbjct: 114 SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVME-----AINRYREGGDVYVV 168
Query: 251 GVPNVGKSTFFNVLTKRAFEDDDVTHV 277
G NVGKSTF N + + A +V
Sbjct: 169 GCTNVGKSTFINRIIEEATGKGNVITT 195
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAEN 125
+ R V +VG NVGKSTF N + + + N
Sbjct: 155 AINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGN 191
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNENNKVPAFLN-----VVDIAGLV 152
V IVG PNVGKST FN L K A E+ T DP ++ +VD G+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQD---TVEWYGKTFKLVDTCGVF 60
Query: 153 KGAAEG 158
+
Sbjct: 61 DNPQDI 66
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN L K+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKK 24
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH---VEGEVNPVRDIEIINEELRLKDV 299
+ L V + G GKS+F N L E++ VE + + D+
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDL 127
Query: 300 EHIEKEINKIEKLVQR 315
I + +++
Sbjct: 128 PGIGSTNFPPDTYLEK 143
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAA 122
V IVG PNVGKST FN + +
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERIS 29
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN +
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGE 26
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
+KV + G PNVGK++ FN LT + N+P T++
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVE 41
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFP 127
L +G++G PN GK+T FN LT S N+
Sbjct: 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWA 34
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFP 127
V +VG PNVGK+T FN LT N+P
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWP 34
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
++G PN GK+T FN LT ++ N+P T++
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE 37
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 7e-04
Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 32/156 (20%)
Query: 20 DGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPKA---- 70
D F S P + R + + D + +H +
Sbjct: 78 DIFDFNGSWLPGLHR----FVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKP 133
Query: 71 ------DSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAE 124
+ K G + + + G+ V +VG NVGKSTF N + K +
Sbjct: 134 EDVFLISAAKGQGIAELADAIEYYRGGK-----DVYVVGCTNVGKSTFINRMIKEFSDET 188
Query: 125 -------NFPFCTIDPNENNKVPAFLNVVDIAGLVK 153
+FP T+D + + ++ D G++
Sbjct: 189 ENVITTSHFPGTTLDLID-IPLDEESSLYDTPGIIN 223
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 100.0 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 100.0 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 100.0 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 100.0 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 100.0 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 100.0 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.95 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.94 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.94 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.8 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.71 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.66 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.66 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.65 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.65 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.65 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.63 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.63 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.62 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.62 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.61 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.61 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.6 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.59 | |
| 2eki_A | 93 | DRG 1, developmentally-regulated GTP-binding prote | 99.58 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.58 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.56 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.56 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.56 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.56 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.56 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.55 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.55 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.53 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.53 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.52 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.52 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.52 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.52 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.52 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.52 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.51 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.51 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.5 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.49 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.48 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.48 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.48 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.48 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.48 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.48 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.48 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.48 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.47 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.47 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.47 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.47 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.47 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.47 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.47 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.47 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.46 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.46 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.46 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.46 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.46 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.46 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.46 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.46 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.46 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.46 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.45 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.45 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.45 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.45 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.45 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.45 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.45 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.44 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.44 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.44 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.44 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.43 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.43 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.43 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.43 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.43 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.43 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.43 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.43 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.43 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.43 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.43 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.43 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.43 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.43 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.42 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.42 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.42 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.42 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.42 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.42 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.42 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.41 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.41 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.41 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.41 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.41 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.41 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.41 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.41 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.41 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.41 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.4 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.4 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.4 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.39 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.39 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.39 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.38 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.38 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.38 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.38 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.38 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.38 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.37 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.37 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.37 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.36 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.36 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.36 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.36 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.35 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.34 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.34 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.33 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.33 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.32 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.32 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.31 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.31 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.3 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.3 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.3 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.29 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.29 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.27 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.27 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.25 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.25 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.24 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.22 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.22 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 98.86 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.22 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.21 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.21 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.21 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.2 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.19 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.19 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.18 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.17 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.17 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.17 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.17 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.16 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.15 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.15 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.15 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.14 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.14 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.14 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.14 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.14 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.14 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.13 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.13 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.13 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.13 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.13 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.13 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.12 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.12 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.12 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.12 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.12 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.11 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.11 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.1 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.1 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.09 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.09 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.09 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.09 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.08 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.08 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.08 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.07 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.07 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.07 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.07 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.07 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.07 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.06 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.06 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.06 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.06 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.06 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.06 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.05 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.05 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.05 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.05 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.05 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.05 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.05 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.05 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.05 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.05 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.05 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.04 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.04 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.04 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.04 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.04 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.03 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.03 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.03 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.03 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.02 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.02 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.02 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.02 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.02 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.01 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.01 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.01 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.01 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.01 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.0 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 98.99 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 98.99 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 98.98 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 98.98 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 98.98 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 98.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 98.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 98.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 98.97 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 98.96 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 98.96 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 98.96 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.95 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.95 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 98.95 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 98.95 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 98.95 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 98.94 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 98.48 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 98.94 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 98.94 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 98.94 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 98.94 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 98.93 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 98.93 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 98.93 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 98.93 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.92 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 98.92 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 98.92 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 98.92 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 98.92 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 98.91 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 98.9 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 98.9 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.9 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 98.9 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 98.89 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 98.89 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 98.88 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 98.88 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 98.88 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 98.88 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 98.88 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 98.87 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 98.86 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 98.86 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 98.86 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.86 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 98.86 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 98.85 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 98.85 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 98.83 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 98.83 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 98.83 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 98.82 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 98.81 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 98.81 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 98.81 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 98.8 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 98.8 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 98.78 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 98.76 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 98.76 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 98.75 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 98.72 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 98.72 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.71 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 98.71 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 98.71 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.71 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 98.7 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 98.67 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 98.66 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 98.65 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 98.64 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 98.63 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 98.63 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 98.61 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 98.61 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.6 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.6 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.59 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 98.58 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 98.55 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.55 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 98.55 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.55 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.54 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 98.53 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 98.51 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 98.5 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.5 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 98.49 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.48 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.47 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 98.47 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 98.46 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 98.46 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 98.44 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 98.42 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 98.42 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.42 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 98.41 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.38 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 98.37 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 98.37 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 98.37 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.34 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 98.32 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 98.32 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.32 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 98.32 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 98.3 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 98.3 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.3 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 98.29 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 98.23 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.23 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.21 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.18 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 98.18 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 98.16 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.15 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 98.14 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 98.14 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 98.14 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.12 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 98.1 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.09 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.08 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 98.08 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 98.06 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 98.04 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 98.04 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.04 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 98.02 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.01 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 97.97 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.93 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 97.88 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 97.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.84 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 97.84 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 97.83 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 97.83 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 97.82 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 97.78 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 97.76 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.76 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 97.68 | |
| 3hvz_A | 78 | Uncharacterized protein; alpha-beta protein, struc | 97.67 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 97.6 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 97.59 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 97.56 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 97.53 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 97.52 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.51 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.43 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 97.42 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.41 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 97.38 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.29 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 97.26 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.21 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 97.04 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.04 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.98 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 96.94 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 96.77 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 96.74 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.67 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 96.61 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 96.45 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 96.39 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.37 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.34 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.17 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.13 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 96.08 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 96.07 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.07 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 96.05 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.02 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 95.94 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.89 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 95.83 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 95.79 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.74 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 95.72 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.69 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 95.64 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 95.64 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.63 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.55 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 95.46 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.44 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.42 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.36 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 95.32 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 95.27 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 95.26 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.2 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 95.09 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.05 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 94.99 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 94.97 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 94.82 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.81 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 94.75 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 94.74 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 94.72 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 94.59 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 94.54 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 94.53 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 94.46 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 94.39 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 94.34 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 94.33 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 94.27 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 94.09 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 94.06 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 94.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 93.98 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 93.96 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 93.87 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 93.75 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 93.75 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 93.72 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 93.72 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 93.71 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 93.67 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 93.66 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 93.66 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 93.52 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 93.52 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 93.52 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 93.51 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 93.45 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 93.44 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 93.38 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 93.36 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 93.34 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 93.32 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 93.32 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 93.29 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 93.29 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 93.28 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 93.25 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 93.24 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 93.22 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 93.22 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 93.18 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 93.18 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 93.16 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 93.12 |
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-67 Score=550.56 Aligned_cols=358 Identities=68% Similarity=1.112 Sum_probs=272.1
Q ss_pred hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-------------------cCCeEEEEeC
Q psy17315 88 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-------------------VPAFLNVVDI 148 (561)
Q Consensus 88 ~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-------------------~~~~i~l~Dt 148 (561)
...++...+++|++||.||||||||||+|++....++++||+|.+++.+.. .+..+.++||
T Consensus 14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp --CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred HHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 456677788999999999999999999999988888999999998876621 1446999999
Q ss_pred CCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCC
Q psy17315 149 AGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKK 228 (561)
Q Consensus 149 pG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~ 228 (561)
||+..+.+.+.+++..|+.+++++|+|+||+|++
T Consensus 94 pGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~---------------------------------------------- 127 (396)
T 2ohf_A 94 AGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAF---------------------------------------------- 127 (396)
T ss_dssp CC-----------CCHHHHHHHTSSSEEEEEEC-----------------------------------------------
T ss_pred CCcccccchhhHHHHHHHHHHHhcCeEEEEEecC----------------------------------------------
Confidence 9999888777889999999999999999999764
Q ss_pred ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHH
Q psy17315 229 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINK 308 (561)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~ 308 (561)
....+.++.|..||+++++.+..++.++|...+++++++
T Consensus 128 -----------------------------------------~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~ 166 (396)
T 2ohf_A 128 -----------------------------------------EDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDK 166 (396)
T ss_dssp ----------------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------------------------CCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhh
Confidence 122233445677899999999999999999998887766
Q ss_pred HHHHHhh-CCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCC-Cccc-CCCCCHHHHHHHHhhhhccCC
Q psy17315 309 IEKLVQR-GDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDK-RHAR-YGDWSNADIEHLNKLNLLTAK 385 (561)
Q Consensus 309 l~~~~~~-~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~-~~~~-~~~~~~~e~~~l~~~~~l~~k 385 (561)
+.+...+ +.+....+ .+++..+..++.+ . .+.+ ...|+.+|.+.++.+.+++.|
T Consensus 167 ~~k~~~~~g~~~~~~~---------------------~~ll~~i~~~L~e--~~~~~~~~~~~~~~e~e~i~~~~llt~K 223 (396)
T 2ohf_A 167 LEKVAVRGGDKKLKPE---------------------YDIMCKVKSWVID--QKKPVRFYHDWNDKEIEVLNKHLFLTSK 223 (396)
T ss_dssp TCSCC--------CCH---------------------HHHHHHHHHHTTC----CCGGGCCCCCHHHHHHHHHHCCGGGS
T ss_pred hhhhhhcccchhhhhH---------------------HHHHHHHHHHHHh--cCcchhhcccCCHHHHHHHHHHHHHhCC
Confidence 5543221 11211122 2777777888877 5 5555 347898988989888888999
Q ss_pred ceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHccc
Q psy17315 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465 (561)
Q Consensus 386 P~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l 465 (561)
|++|++|+.+.+..+..+.++..+++++....++.++|++||+.+..|.+|.++++.+|++++|.+++++++++.+|++|
T Consensus 224 Pviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L 303 (396)
T 2ohf_A 224 PMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL 303 (396)
T ss_dssp CEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred ceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 99999999977766545778888988876543468899999999999999999999999999996699999999999999
Q ss_pred CceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEE
Q psy17315 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDII 545 (561)
Q Consensus 466 ~li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~ 545 (561)
+|++|||+||+|+|||++++|+||+|+|+.|||||++|||||+||+|+||+++|||++||++|++|++||||+|+|||||
T Consensus 304 ~li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii 383 (396)
T 2ohf_A 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDII 383 (396)
T ss_dssp TEEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q psy17315 546 FFKFNAGAGL 555 (561)
Q Consensus 546 ~~~~~~~~~~ 555 (561)
+||||++++.
T Consensus 384 ~f~fn~~~~~ 393 (396)
T 2ohf_A 384 FFKFNTPQQP 393 (396)
T ss_dssp EEEEC-----
T ss_pred EEEecCCccc
Confidence 9999998764
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-67 Score=544.22 Aligned_cols=342 Identities=41% Similarity=0.761 Sum_probs=289.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c------------------CCeEEEEeCCCcccCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V------------------PAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~------------------~~~i~l~DtpG~~~~~~ 156 (561)
+++|++||.||||||||||+|++....++++||+|.+++.+.. . +..+.++||||+..+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 4789999999999999999999988888999999999887621 1 24799999999998877
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
.+.+++.+|+.+++++|+++||+|++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~------------------------------------------------------ 107 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCF------------------------------------------------------ 107 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS------------------------------------------------------
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecC------------------------------------------------------
Confidence 67788899999999999999999765
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
...++.++.|.+||.+++..+..||.++|...+++++.++.+....+
T Consensus 108 ---------------------------------~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g 154 (363)
T 1jal_A 108 ---------------------------------ENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGG 154 (363)
T ss_dssp ---------------------------------CC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ---------------------------------CCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhcc
Confidence 22334556677899999999999999999999999999887764323
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
.+....+. +.+..+..++++ ..+.+...|++++...+..+.+++.||+++|+||.|.
T Consensus 155 ~~~~~~~~---------------------~~l~~~~~~L~~--~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~ 211 (363)
T 1jal_A 155 DKEAKFEL---------------------SVMEKILPVLEN--AGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNED 211 (363)
T ss_dssp CHHHHHHH---------------------HHHHHHHHHHHT--TCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTT
T ss_pred chhHHHHH---------------------HHHHHHHHHHhc--CCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccc
Confidence 33222222 778888888887 6777767899999999998888889999999999976
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHcccCceeccccCC
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSLQLQYFFTAGQ 475 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~~t~~~ 475 (561)
+. ..+.+.+.++++.... +.++|++||+.+..|.+|.++++.+|+++++ .+++++++++.+|+.|+|++|||+|+
T Consensus 212 ~~--~~n~~~~~v~~~~~~~--~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~ 287 (363)
T 1jal_A 212 GF--ENNPYLDRVREIAAKE--GAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGV 287 (363)
T ss_dssp CS--SSCHHHHHHHHHHHHT--TCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECS
T ss_pred cc--cccHHHHHHHHHHHHc--CCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCC
Confidence 54 2456788888887665 6789999999999999999988899999988 78999999999999999999999999
Q ss_pred CceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEecC
Q psy17315 476 DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551 (561)
Q Consensus 476 ~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~~ 551 (561)
+|+|||++++|+||+|+|++|||||+||||||+||+|+||+++|||++||++|++|++||||+|+|||||+||||+
T Consensus 288 ~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 288 KEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV 363 (363)
T ss_dssp SEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEESCC
T ss_pred CCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-65 Score=534.57 Aligned_cols=342 Identities=42% Similarity=0.668 Sum_probs=288.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-----------------------ccCCeEEEEeCCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-----------------------KVPAFLNVVDIAGLVK 153 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-----------------------~~~~~i~l~DtpG~~~ 153 (561)
++|++||.||||||||+|+|++....++++|++|.+++.+. ..+..+.++||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999988777899999999887763 1345799999999998
Q ss_pred CCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHH
Q psy17315 154 GAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGE 233 (561)
Q Consensus 154 ~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~ 233 (561)
+.+.+.+++++|+.+++++|++++|+|++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~--------------------------------------------------- 110 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCF--------------------------------------------------- 110 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECC---------------------------------------------------
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECC---------------------------------------------------
Confidence 88777788899999999999999999865
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHH
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLV 313 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~ 313 (561)
....+.++.|.+||.+++..+..+|.++|...++++++++.+..
T Consensus 111 ------------------------------------~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~ 154 (368)
T 2dby_A 111 ------------------------------------PDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEA 154 (368)
T ss_dssp ------------------------------------CCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhh
Confidence 11233455677899999999999999999999999999887654
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
. +.+....+. +++..+..++++ ..+.+...|++++...++.+.+++.||+++++||
T Consensus 155 ~-~~~~~~~~~---------------------~~l~~~~~~L~~--~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~ 210 (368)
T 2dby_A 155 R-ADRERLPLL---------------------EAAEGLYVHLQE--GKPARTFPPSEAVARFLKETPLLTAKPVIYVANV 210 (368)
T ss_dssp H-HCGGGHHHH---------------------HHHHHHHHHHHT--TCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEEC
T ss_pred c-cchhHHHHH---------------------HHHHHHHHHHhc--CCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccc
Confidence 2 222221222 777888888887 5555656789999999999998889999999999
Q ss_pred Chhhhhhh-ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHcccCceecc
Q psy17315 394 SAKDYIKK-KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSLQLQYFF 471 (561)
Q Consensus 394 ~D~d~~~~-~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~~ 471 (561)
.|.|+.+. .+.+.+.++++++.. +.+++++||+++.+|.+|.++++.+|+++++ .+++++++++.+|+.|+|++||
T Consensus 211 ~e~d~~~~~~n~~~~~v~~~a~~~--g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~f 288 (368)
T 2dby_A 211 AEEDLPDGRGNPQVEAVRRKALEE--GAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFF 288 (368)
T ss_dssp CGGGTTTCTTCHHHHHHHHHHHHH--TCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred cHHhhcccchhhHHHHHHHHHHHc--CCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEE
Confidence 97665431 256788888887665 6789999999999999999999999999998 7899999999999999999999
Q ss_pred ccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEecC
Q psy17315 472 TAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551 (561)
Q Consensus 472 t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~~ 551 (561)
|+|++++|||++++|+||+|+|++|||||+||||||+||+|+||+++|||++||++|++|++||||+|||||||+||||+
T Consensus 289 t~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 289 TAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368 (368)
T ss_dssp EESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEEC--
T ss_pred CCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-64 Score=528.71 Aligned_cols=358 Identities=50% Similarity=0.885 Sum_probs=300.7
Q ss_pred hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccccc-c------------------CCeEEEEeC
Q psy17315 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNENNK-V------------------PAFLNVVDI 148 (561)
Q Consensus 89 ~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~~~-~------------------~~~i~l~Dt 148 (561)
..++...+.+++++|.||||||||||+|++... .++++||+|++++.+.. . +..+.++||
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 456677789999999999999999999999885 89999999999987732 2 236899999
Q ss_pred CCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCC
Q psy17315 149 AGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKK 228 (561)
Q Consensus 149 pG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~ 228 (561)
||+..+.+.++++++.|+..++.+|++++|+|+.
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~---------------------------------------------- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAF---------------------------------------------- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECC----------------------------------------------
T ss_pred cccccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------------------------------
Confidence 9999888877889889999999999999999653
Q ss_pred ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHH
Q psy17315 229 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINK 308 (561)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~ 308 (561)
....+.++.|.+||++++.+++.++.++|...+++.++.
T Consensus 127 -----------------------------------------~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~ 165 (392)
T 1ni3_A 127 -----------------------------------------DDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEG 165 (392)
T ss_dssp -----------------------------------------CTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------ccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHH
Confidence 122334455677999999999999999999998888887
Q ss_pred HHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCC-CcccCCCCCHHHHHHHHhhhhccCCce
Q psy17315 309 IEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDK-RHARYGDWSNADIEHLNKLNLLTAKTQ 387 (561)
Q Consensus 309 l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~-~~~~~~~~~~~e~~~l~~~~~l~~kP~ 387 (561)
+.....++...+....... ..+++..+..++.+ + .+.+...|+++|.+.++.+.+++.||+
T Consensus 166 l~~~~~~~g~ti~sh~~~~----------------~~~l~~~i~~~L~~--G~~~~~~~~~~~~e~e~i~~~~~lt~kp~ 227 (392)
T 1ni3_A 166 LRKITSRGANTLEMKAKKE----------------EQAIIEKVYQYLTE--TKQPIRKGDWSNREVEIINSLYLLTAKPV 227 (392)
T ss_dssp HHHTTCCSSCSSSHHHHHH----------------HHHHHHHHHHHHHT--TCSCGGGSCCCHHHHHHHHTTCCGGGSCE
T ss_pred HHHHHHhcCCccccccHHH----------------HHHHHHHHHHHhcc--CCceeecCCCCHHHHHHHHHHhhhccCce
Confidence 7765111211110011111 11566677777777 6 666667889999999998888899999
Q ss_pred EEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCc
Q psy17315 388 IYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQL 467 (561)
Q Consensus 388 iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~l 467 (561)
++++|+.|.+...+.+.+++++++++....|+.++|++||+.+..|.+|.++++.+|+++++.+++++++++.+|++|+|
T Consensus 228 ~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l 307 (392)
T 1ni3_A 228 IYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNL 307 (392)
T ss_dssp EEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTE
T ss_pred EEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCC
Confidence 99999998665423477889999988776556789999999999999999999999999999889999999999999999
Q ss_pred eeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 468 QYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 468 i~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
++|||+||+|+|||++++|+||+|+||+|||||+||||||+||+|+||+++|||++||++|+.|++||||+|+|||||+|
T Consensus 308 ~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 308 INYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHW 387 (392)
T ss_dssp EEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEEC
T ss_pred EEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q psy17315 548 KFNA 551 (561)
Q Consensus 548 ~~~~ 551 (561)
|||+
T Consensus 388 ~f~~ 391 (392)
T 1ni3_A 388 KAGK 391 (392)
T ss_dssp C---
T ss_pred EccC
Confidence 9997
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=379.42 Aligned_cols=330 Identities=25% Similarity=0.373 Sum_probs=218.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-----------------------c---CCeEEEEeCCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-----------------------V---PAFLNVVDIAG 150 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-----------------------~---~~~i~l~DtpG 150 (561)
++|+++|.||||||||||+|++..+.++++||+|++++.+.. . ..++.++||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 479999999999999999999988888999999999887631 0 13699999999
Q ss_pred cccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCcc
Q psy17315 151 LVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTD 230 (561)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~ 230 (561)
+..+.+.+.+++.+|+.+++++|++++|+|++..
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~---------------------------------------------- 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK---------------------------------------------- 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC----------------------------------------------
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc----------------------------------------------
Confidence 9877666677889999999999999999986410
Q ss_pred HHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHH
Q psy17315 231 EGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIE 310 (561)
Q Consensus 231 ~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~ 310 (561)
......++ +++||.++++.+..+|.+||+..+++++.++.
T Consensus 115 ---------------------------------------~~~~g~~~-~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~ 154 (397)
T 1wxq_A 115 ---------------------------------------TDPEGQPT-DYHDPVEDIEFLEREIDYWIYGILSKGWDKFA 154 (397)
T ss_dssp ---------------------------------------BCTTSCBC-SCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred ---------------------------------------cCCCCccc-CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 00111122 25699999999999999999999988888887
Q ss_pred HHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEE
Q psy17315 311 KLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYL 390 (561)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv 390 (561)
+...++.... ...+...+++ .+. ..+.+..+.+.+.. ..+ ...|+.++...+....+++.+|+|+|
T Consensus 155 k~~~~~~~~~-~~~~~~~l~g--------~~~-~~~~~~~~l~~l~~--~~~--~~~~~~~e~~~l~~~~~~~~kP~i~v 220 (397)
T 1wxq_A 155 KRIKLQKIKL-ESAIAEHLSG--------IGV-NENDVWEAMHKLNL--PED--PTKWSQDDLLAFASEIRRVNKPMVIA 220 (397)
T ss_dssp STTTSSCCCH-HHHHHHHTGG--------GTC-CHHHHHHHHHHTTC--CSC--GGGCCHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHHhhcCccH-HHHHHHHhcc--------cCC-CHHHHHHHHHHhcc--CCc--cccCCHHHHHHHHHhhhccCCCEEEE
Confidence 5433222111 1111111111 011 12445555555544 222 23688888777777776678999999
Q ss_pred ecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCC---------------------HHH-------HH
Q psy17315 391 VNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP---------------------DDE-------RQ 442 (561)
Q Consensus 391 ~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~---------------------~~~-------~~ 442 (561)
+||+|.+ ....++++.+.+... +.+++++||+.|.|+.+|. ++. ++
T Consensus 221 ~NK~D~~----~~~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire 294 (397)
T 1wxq_A 221 ANKADAA----SDEQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKE 294 (397)
T ss_dssp EECGGGS----CHHHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHH
T ss_pred EeCcccc----chHHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHH
Confidence 9999643 234456665554432 4689999999999998752 222 23
Q ss_pred HHHHHhcccchHHHHHH-HHHcccCceeccccCC----------CceeccccCCCCCccccccccccccCCCeEEEEEec
Q psy17315 443 RYLDEQKATSVLDKIIT-QGYKSLQLQYFFTAGQ----------DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMH 511 (561)
Q Consensus 443 ~~~~~~~~~~~l~~li~-~~~~~l~li~~~t~~~----------~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~ 511 (561)
+|++.++ +++++++++ .+|+.|+|++|||+|+ .++++|++++|+|++|+|+.||+||+++|++|+
T Consensus 295 ~~l~~~g-~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~--- 370 (397)
T 1wxq_A 295 KVLDRFG-STGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI--- 370 (397)
T ss_dssp HHTSSSS-SCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE---
T ss_pred HHHHHhC-cchHHHHHHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH---
Confidence 5666677 788999996 5599999999999762 366999999999999999999999999999998
Q ss_pred hhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEec
Q psy17315 512 FDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550 (561)
Q Consensus 512 ~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~ 550 (561)
+++| .+++|++|+|+|||||+|.-.
T Consensus 371 -------------~~~~-~~~~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 371 -------------NART-KRRVGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp -------------ETTT-CSBCCTTCCCCTTEEEEEEEC
T ss_pred -------------HhcC-CEEcCCCccccCCCEEEEEeC
Confidence 1245 367899999999999999753
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=364.92 Aligned_cols=288 Identities=18% Similarity=0.295 Sum_probs=192.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
-.+|++||+||||||||||+|++....++++||+|++++.+. ..+.+++|+||||++++.+.+.+++++|++.+++||
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 468999999999999999999999989999999999998874 356789999999999988888899999999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS--------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++|+|+. .+....+.+..+|...... +.||+|...-
T Consensus 152 ~il~vvD~~------------~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi---------------------- 197 (376)
T 4a9a_A 152 LLFIILDVN------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGI---------------------- 197 (376)
T ss_dssp EEEEEEETT------------SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCE----------------------
T ss_pred ccccccccC------------ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhh----------------------
Confidence 999999875 2334455555666543321 5555554300
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
.. ..+. +...+ | .+....+...+.-..+.....
T Consensus 198 -----------------------------~i-~~~~-~~~~l----------~----~eeik~il~~~~lt~kpv~~~-- 230 (376)
T 4a9a_A 198 -----------------------------SI-TNTV-PLTHL----------G----NDEIRAVMSEYRINSAEIAFR-- 230 (376)
T ss_dssp -----------------------------EE-EESS-CCSSC----------C----HHHHHHHHHHTTCCSEEEEEC--
T ss_pred -----------------------------hh-hcch-hhhhc----------c----HHHHHHHHHHhcccCCCeeec--
Confidence 00 0000 00000 0 000111111110001111000
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
..++.++............+|+++++||+|. ..
T Consensus 231 ----------------------------------------~nv~eddl~d~~~~~~~~~~p~i~v~nKid~--~~----- 263 (376)
T 4a9a_A 231 ----------------------------------------CDATVDDLIDVLEASSRRYMPAIYVLNKIDS--LS----- 263 (376)
T ss_dssp ----------------------------------------SCCCHHHHHHHHTTTTCEEECEEEEEECGGG--SC-----
T ss_pred ----------------------------------------ccCCHHHHHHHHHHHHhhccceEEEEecccc--cC-----
Confidence 1122222222221222257899999999943 21
Q ss_pred HHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceeccccCCCceeccccCC
Q psy17315 406 LPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQK 485 (561)
Q Consensus 406 ~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~t~~~~ev~a~~~~~ 485 (561)
.+++.... . ....+++|+..+.| ++++++.+|+.|+|++|||+|++|+|+|++|.
T Consensus 264 ~eele~l~-~---~~~~~~is~~~e~g---------------------Ld~Li~~~y~~L~Li~~fT~g~~E~rawt~~~ 318 (376)
T 4a9a_A 264 IEELELLY-R---IPNAVPISSGQDWN---------------------LDELLQVMWDRLNLVRIYTKPKGQIPDFTDPV 318 (376)
T ss_dssp HHHHHHHT-T---STTEEECCTTTCTT---------------------HHHHHHHHHHHHCCEEEEECCSSSCCCSSSCE
T ss_pred HHHHHHHh-c---ccchhhhhhhhccc---------------------chhHHHHHHHHcCCcEEEeCCCCCcCCCCccc
Confidence 22333322 1 24578999887665 55678889999999999999999999999987
Q ss_pred CCCcc-----ccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEE
Q psy17315 486 GTKAP-----QAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 548 (561)
Q Consensus 486 g~ta~-----~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~ 548 (561)
|.+++ |+|+.||+|+.++|++|+||+.+ + +++.|++||||+|+|||||+|.
T Consensus 319 ~~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~----------~--K~~~r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 319 VLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSS----------V--KHQPQYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp EEBTTBCBHHHHHHHHCGGGGGGEEEEEEESTT----------S--SSSSEEECTTCBCCTTCEEEEE
T ss_pred cccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcc----------c--CCCCCccCCCcEEcCCCEEEEE
Confidence 76666 45999999999999999999754 3 4445999999999999999985
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=256.52 Aligned_cols=322 Identities=18% Similarity=0.180 Sum_probs=167.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~ 172 (561)
.+|++||.||||||||+|+|++.. +.+++.||+|++...+. ..+..+.+|||||+...... ...+......++++|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999987 67899999999876542 33567999999999743211 112333445678899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcC---------CCC-----Ccc-----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKM---------GPK-----KTD----- 230 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~---------~~~-----~~~----- 230 (561)
|++++|+|++.... .. . ..+.+.+.....+ |+||+|..+.. +.. ++.
T Consensus 84 d~il~vvD~~~~~~---------~~-d-~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 84 DVIIFMVNGREGVT---------AA-D-EEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp SEEEEEEETTTCSC---------HH-H-HHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTH
T ss_pred CEEEEEEeCCCCCC---------HH-H-HHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCCh
Confidence 99999998763110 00 0 1122222222233 89999986431 110 111
Q ss_pred HHHHHHHhhhcC---------CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccH
Q psy17315 231 EGEKKMLLGRVG---------TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDV 299 (561)
Q Consensus 231 ~~~l~~l~~~~~---------~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt 299 (561)
...++.+...+. ...++++.|.+|+|||+|+|++++..+ ..++..+||+ |... .+...+..+.+|||
T Consensus 153 ~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT 230 (436)
T 2hjg_A 153 GDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDTSFTYNQQEFVIVDT 230 (436)
T ss_dssp HHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT--EEEC---------CCEEEEETTEEEEETTH
T ss_pred HHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCc--eeecCCCCceeeeeEEEEEECCeEEEEEEC
Confidence 122333332222 336899999999999999999998743 2233344554 3332 23444557899999
Q ss_pred HHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhh
Q psy17315 300 EHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKL 379 (561)
Q Consensus 300 ~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~ 379 (561)
||+.+.. ......+.+ ..+.. ...+..+++++.|.+. ....+.++..++...
T Consensus 231 ~G~~~~~---------~~~~~~e~~-~~~~~--------~~~~~~ad~~llv~D~----------~~~~s~~~~~~~~~~ 282 (436)
T 2hjg_A 231 AGMRKKG---------KVYETTEKY-SVLRA--------LKAIDRSEVVAVVLDG----------EEGIIEQDKRIAGYA 282 (436)
T ss_dssp HHHTCBT---------TBCCCCSHH-HHHHH--------HHHHHHCSEEEEEEET----------TTCCCHHHHHHHHHH
T ss_pred CCcCcCc---------cccchHHHH-HHHHH--------HHHHHhCCEEEEEEcC----------CcCCcHHHHHHHHHH
Confidence 9973210 000000111 00000 0000000111111110 012345555555443
Q ss_pred hhccCCceEEEecCChhhhhhhccc----hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--ccch
Q psy17315 380 NLLTAKTQIYLVNLSAKDYIKKKNK----WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--ATSV 453 (561)
Q Consensus 380 ~~l~~kP~iiv~NK~D~d~~~~~~~----~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~~~~ 453 (561)
.. .++|+++|+||+| +.+.... ..+.+.+.+... .+.+++++||++|.|+.++.+...+.+.+... +++.
T Consensus 283 ~~-~~~~iiiv~NK~D--l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ 358 (436)
T 2hjg_A 283 HE-AGKAVVIVVNKWD--AVDKDESTMKEFEENIRDHFQFL-DYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNV 358 (436)
T ss_dssp HH-TTCEEEEEEECGG--GSCCCTTHHHHHHHHHHHHCGGG-TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHH
T ss_pred HH-cCCcEEEEEECcc--CCCcchHHHHHHHHHHHHhcccC-CCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHH
Confidence 33 5899999999995 4332222 222333332222 36789999999999999998888777765533 6677
Q ss_pred HHHHHHHHHc
Q psy17315 454 LDKIITQGYK 463 (561)
Q Consensus 454 l~~li~~~~~ 463 (561)
++.++..+..
T Consensus 359 ln~~l~~~~~ 368 (436)
T 2hjg_A 359 LNDVIMDAVA 368 (436)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-28 Score=261.26 Aligned_cols=319 Identities=22% Similarity=0.270 Sum_probs=170.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc--cccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~ 171 (561)
.+|++||.||||||||||+|++.. +.++++||+|++...+. +.+..+.+|||||+...... ...+..+...++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 479999999999999999999987 66899999999987652 34557999999999753221 11233445667899
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch---hhccccccCc----C-------CC-----CCcc-
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS---VDAKADSKKK----M-------GP-----KKTD- 230 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~---v~NK~D~~~~----~-------~~-----~~~~- 230 (561)
||++++|+|++..- ... ..+.+.+.....+ |+||+|..+. . +. .++.
T Consensus 82 ad~il~V~D~~~~~------------~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 82 ADLVLFVVDGKRGI------------TKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEH 149 (439)
T ss_dssp CSEEEEEEETTTCC------------CHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTT
T ss_pred CCEEEEEEECCCCC------------CHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccC
Confidence 99999999975311 001 1122233333333 7888887422 0 11 1111
Q ss_pred ----HHHHHHHhhhc-------------CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhh
Q psy17315 231 ----EGEKKMLLGRV-------------GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIIN 291 (561)
Q Consensus 231 ----~~~l~~l~~~~-------------~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~ 291 (561)
...++.+...+ ....+++++|.+|+|||+|+|.+++..+ ..++..+|++ |+... +.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~--~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKER--ALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTT--EEECCCC------CCEEEEETT
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcc--cccCCCCCCcCCceEEEEEECC
Confidence 11122221111 1235899999999999999999998742 3345555665 55432 44455
Q ss_pred HhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCc--cc-CCCC
Q psy17315 292 EELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRH--AR-YGDW 368 (561)
Q Consensus 292 ~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~--~~-~~~~ 368 (561)
..+.+|||||+++.. .+..... +.+ .. ......+ ..++... .+ ....
T Consensus 228 ~~~~l~Dt~G~~~~~-~~~~~~~-------e~~-~~-----------------~~~~~~i----~~ad~vllv~d~~~~~ 277 (439)
T 1mky_A 228 RKYVFVDTAGLRRKS-RVEPRTV-------EKY-SN-----------------YRVVDSI----EKADVVVIVLDATQGI 277 (439)
T ss_dssp EEEEESSCSCC-------------------CCS-CC-----------------HHHHHHH----HHCSEEEEEEETTTCC
T ss_pred EEEEEEECCCCcccc-ccchhhH-------HHH-HH-----------------HHHHHHH----hhCCEEEEEEeCCCCC
Confidence 678899999975421 1110000 000 00 0111111 1000000 00 0122
Q ss_pred CHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHH----HHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 369 SNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIK----EWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 369 ~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~----~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
+..+..+..... ..++|+++|+||+|. .+......+++. +.+... .+.+++++||++|.|+.+|.+...+.+
T Consensus 278 ~~~~~~i~~~l~-~~~~~~ilv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 278 TRQDQRMAGLME-RRGRASVVVFNKWDL--VVHREKRYDEFTKLFREKLYFI-DYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp CHHHHHHHHHHH-HTTCEEEEEEECGGG--STTGGGCHHHHHHHHHHHCGGG-TTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HcCCCEEEEEECccC--CCchhhHHHHHHHHHHHHhccC-CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444333322 258999999999954 322221122222 222211 257899999999999999988877766
Q ss_pred HHHhc--ccchHHHHHHHHHc
Q psy17315 445 LDEQK--ATSVLDKIITQGYK 463 (561)
Q Consensus 445 ~~~~~--~~~~l~~li~~~~~ 463 (561)
.+... +++.+++++..+..
T Consensus 354 ~~~~~~i~t~~ln~~l~~~~~ 374 (439)
T 1mky_A 354 ASYTTKVPSSAINSALQKVLA 374 (439)
T ss_dssp HHHTCCCCHHHHHHHHHHHHT
T ss_pred HhhcccCCHHHHHHHHHHHHH
Confidence 55433 67788888887754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-27 Score=252.49 Aligned_cols=323 Identities=17% Similarity=0.174 Sum_probs=170.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-cccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~ 171 (561)
..+|+++|.||||||||+|+|++.. ..+.+.||+|++..... ..+..+.+|||||+...... ...+......++++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 3689999999999999999999988 67889999999876542 34567999999998732211 11233334556789
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcCC---------C-----CCcc---
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKMG---------P-----KKTD--- 230 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~~---------~-----~~~~--- 230 (561)
+|++++|+|++.. ....+ .+.+.+.....+ |+||+|..+... . .++.
T Consensus 103 ad~il~VvD~~~~------------~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 103 ADVIIFMVNGREG------------VTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGL 170 (456)
T ss_dssp CSEEEEEEESSSC------------SCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCT
T ss_pred CCEEEEEEeCCCC------------CChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeeccccc
Confidence 9999999987521 01111 122223222223 889999864321 1 0111
Q ss_pred --HHHHHHHhhhc---------CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcc
Q psy17315 231 --EGEKKMLLGRV---------GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLK 297 (561)
Q Consensus 231 --~~~l~~l~~~~---------~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~ 297 (561)
...+..+.... ....++.+.|.+|+|||+|+|.+++.. ...++..+||+ |... .+...+..+.+|
T Consensus 171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~l~ 248 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVDTSFTYNQQEFVIV 248 (456)
T ss_dssp THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--TEEECC------CTTSEEEEETTEEEEET
T ss_pred chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC--ccccCCCCCeEEEEEEEEEEECCceEEEE
Confidence 12233332222 234689999999999999999999763 22334444554 3332 234445678999
Q ss_pred cHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHH
Q psy17315 298 DVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLN 377 (561)
Q Consensus 298 Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~ 377 (561)
||||+.+.- ......+.+ .... ....+..+++++.|++. ...+.+.+..++.
T Consensus 249 DT~G~~~~~---------~~~~~~e~~-~~~~--------~~~~~~~ad~~llviD~----------~~~~~~~~~~~~~ 300 (456)
T 4dcu_A 249 DTAGMRKKG---------KVYETTEKY-SVLR--------ALKAIDRSEVVAVVLDG----------EEGIIEQDKRIAG 300 (456)
T ss_dssp TGGGTTTBT---------TBCCCCSHH-HHHH--------HHHHHHHCSEEEEEEET----------TTCCCHHHHHHHH
T ss_pred ECCCCCcCc---------ccchHHHHH-HHHH--------HHHHHhhCCEEEEEEeC----------CCCcCHHHHHHHH
Confidence 999963210 000000111 0000 00000011111111110 0123455555554
Q ss_pred hhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--ccc
Q psy17315 378 KLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--ATS 452 (561)
Q Consensus 378 ~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~~~ 452 (561)
.... .++|+|+|+||+| +........+++.+.++... .+.+++++||++|.|+.+|.+...+.+.+... +++
T Consensus 301 ~~~~-~~~~~ilv~NK~D--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~ 377 (456)
T 4dcu_A 301 YAHE-AGKAVVIVVNKWD--AVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTN 377 (456)
T ss_dssp HHHH-TTCEEEEEEECGG--GSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHH
T ss_pred HHHH-cCCCEEEEEEChh--cCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHH
Confidence 4433 5799999999995 44323333344444333321 25789999999999999998887777665543 566
Q ss_pred hHHHHHHHHHc
Q psy17315 453 VLDKIITQGYK 463 (561)
Q Consensus 453 ~l~~li~~~~~ 463 (561)
.+++++..+..
T Consensus 378 ~ln~~l~~~~~ 388 (456)
T 4dcu_A 378 VLNDVIMDAVA 388 (456)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888776654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-20 Score=184.56 Aligned_cols=140 Identities=26% Similarity=0.345 Sum_probs=100.1
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|+|+|||+| .+++|+.+++ +.++||++ +||++++..+.|.+++++.+..+ +++..+.+.
T Consensus 24 aDvVl~VvDAr~p------~~~~~~~l~~----~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 24 IDIVYELVDARIP------MSSRNPMIED----ILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp CSEEEEEEETTST------TTTSCHHHHH----HCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred CCEEEEEEeCCCC------CccCCHHHHH----HHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccH
Confidence 4678999999999 9999999998 77888887 99999988999999998767655 677666665
Q ss_pred CCchhhhH---------hhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKTDEGEK---------KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~~~~~~---------~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
........ ....+....+++++++|.||||||||+|+|++.. +.+++.||+|++.+. ...+..+.++||
T Consensus 94 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~l~Dt 172 (282)
T 1puj_A 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW-VKVGKELELLDT 172 (282)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC-EEETTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE-EEeCCCEEEEEC
Confidence 54211110 1112234567899999999999999999999988 889999999998764 445668999999
Q ss_pred CCcccCCc
Q psy17315 149 AGLVKGAA 156 (561)
Q Consensus 149 pG~~~~~~ 156 (561)
||+..+..
T Consensus 173 pG~~~~~~ 180 (282)
T 1puj_A 173 PGILWPKF 180 (282)
T ss_dssp CCCCCSCC
T ss_pred cCcCCCCC
Confidence 99987653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-18 Score=168.32 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=89.7
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc-cccccccCCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK-ADSKKKMGPK 79 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~-~~~~~~~~~~ 79 (561)
.+++|+|+|||+| .+++|+.++ . + ++|++ +||++++..+.|++++++.+..+ +++..+.+..
T Consensus 22 ~D~vl~VvDar~P------~~~~~~~l~-l---l--~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v~iSa~~~~gi~ 89 (262)
T 3cnl_A 22 VNTVVEVRDARAP------FATSAYGVD-F---S--RKETIILLNKVDIADEKTTKKWVEFFKKQGKRVITTHKGEPRKV 89 (262)
T ss_dssp CSEEEEEEETTST------TTTSCTTSC-C---T--TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCEEECCTTSCHHH
T ss_pred CCEEEEEeeCCCC------CcCcChHHH-h---c--CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeEEEECCCCcCHH
Confidence 4678999999999 999999886 2 2 77776 99999988999999998876554 3333332211
Q ss_pred CchhhhHhhhhcCCCCC-cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCC
Q psy17315 80 KTDEGEKKMLLGRVGTN-LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~ 155 (561)
. .. ...... .+++++|.||||||||+|+|++.. ..+++.||+|+.... ...+..+.++||||+..+.
T Consensus 90 ~---L~-----~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 90 L---LK-----KLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW-FSLENGVKILDTPGILYKN 158 (262)
T ss_dssp H---HH-----HHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE-EECTTSCEEESSCEECCCC
T ss_pred H---HH-----HHHHHhhhheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE-EEeCCCEEEEECCCcccCc
Confidence 1 11 111122 689999999999999999999988 688999999998654 4445679999999998765
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-17 Score=171.66 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=95.7
Q ss_pred CcE-EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccc---cccccc
Q psy17315 96 NLK-VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGN---AFLSHI 169 (561)
Q Consensus 96 ~~~-v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~---~~l~~i 169 (561)
+++ |+++|+||||||||+|+|++....+++.|++|+++..+.. .+..+.++||||++...+. .+.. ..+..+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~--~lve~f~~tl~~~ 255 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPP--QIVDAFFVTLSEA 255 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCG--GGHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCH--HHHHHHHHHHHHH
Confidence 444 9999999999999999999988778899999999876522 2357899999998754321 2222 235668
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhc--
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRV-- 241 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~-- 241 (561)
+.+|++++|+|++... .....++....+.+..+.. + |.||+|+.... ..........+....
T Consensus 256 ~~aD~il~VvD~s~~~--------~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSE--------NLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD--LYKKLDLVEKLSKELYS 325 (364)
T ss_dssp GGSSEEEEEEETTSCH--------HHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC--HHHHHHHHHHHHHHHCS
T ss_pred HhCCEEEEEEECCCCc--------chHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch--HHHHHHHHHHHHHHhcC
Confidence 8999999999875311 0122333333444444321 1 79999997321 000001121122222
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..|+++|.+..
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 123468999999999999999998764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-17 Score=170.74 Aligned_cols=238 Identities=15% Similarity=0.105 Sum_probs=146.2
Q ss_pred EEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHh-c-CCCc--cccccccCCCCc
Q psy17315 11 KLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSD-K-LRPK--ADSKKKMGPKKT 81 (561)
Q Consensus 11 ev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~-~-~~~~--~~~~~~~~~~~~ 81 (561)
.++|++.| ++++||.+++....+.+.|+.+ +||+++...+.|..|++. . +... .+........+.
T Consensus 63 ~i~~~~~~------l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (357)
T 2e87_A 63 KVLERTPG------LSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRV 136 (357)
T ss_dssp HHHHHSCC------GGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC------cccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 56788989 9999999998332333677665 799999999999999986 3 4443 111111111110
Q ss_pred hhh----hH-------h--hh---hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeE
Q psy17315 82 DEG----EK-------K--ML---LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFL 143 (561)
Q Consensus 82 ~~~----~~-------~--~~---~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i 143 (561)
... .. . .. ........+|+++|.||||||||+|+|++....+++.|++|.+...+.. .+..+
T Consensus 137 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 216 (357)
T 2e87_A 137 ASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRY 216 (357)
T ss_dssp HHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceE
Confidence 000 00 0 00 0112456899999999999999999999988777888999988765422 23568
Q ss_pred EEEeCCCcccCCcccc-cc-ccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhc
Q psy17315 144 NVVDIAGLVKGAAEGQ-GL-GNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDA 216 (561)
Q Consensus 144 ~l~DtpG~~~~~~~~~-~~-~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~N 216 (561)
.++||||+........ .+ ...+......+|++++|+|++... .....+....+. .+... ..+ |.|
T Consensus 217 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~-------~~~~~~~~~~~~-~i~~~~~~~piilV~N 288 (357)
T 2e87_A 217 QIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC-------GFPLEEQIHLFE-EVHGEFKDLPFLVVIN 288 (357)
T ss_dssp EEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT-------SSCHHHHHHHHH-HHHHHTTTSCEEEEEC
T ss_pred EEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc-------cCCHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 9999999975432111 11 112223335689999999875311 001111122222 22221 222 899
Q ss_pred cccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 217 KADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 217 K~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
|+|+...... ........ ....+.+.+|+++|.|++.|++++.+..
T Consensus 289 K~Dl~~~~~~-----~~~~~~~~-~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 289 KIDVADEENI-----KRLEKFVK-EKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp CTTTCCHHHH-----HHHHHHHH-HTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred CcccCChHHH-----HHHHHHHH-hcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 9999743211 11111111 1234679999999999999999998863
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-17 Score=167.46 Aligned_cols=160 Identities=23% Similarity=0.378 Sum_probs=120.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-cC--CeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-VP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.+|+++|+||||||||+|+|++....++++|++|..++.+.. .+ ..+.++||||+....+...++...|+.++..+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 479999999999999999999988778899999999887632 22 579999999998766666678888999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC-C
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT-N 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~-~ 244 (561)
+++||+|++..+ ....++.++.+.+++..+. .+ |+||+|+... ...+..+...+.. .
T Consensus 239 ~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-------~e~~~~l~~~l~~~~ 304 (342)
T 1lnz_A 239 VIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-------AENLEAFKEKLTDDY 304 (342)
T ss_dssp EEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-------HHHHHHHHHHCCSCC
T ss_pred EEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-------HHHHHHHHHHhhcCC
Confidence 999999876310 0224455556666666542 11 8999999732 1233444444332 4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|++++.|++.|+++|.+....
T Consensus 305 ~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 305 PVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 67899999999999999999887543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=156.52 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=108.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc-CCeEEEEeCCCcccCCcc--ccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV-PAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~-~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.||||||||||+|++....++++||+|.+...+... +..+.+|||||....... .+.+...++.. ..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhc-CCC
Confidence 46899999999999999999999888899999999987655322 557999999999754321 11222333321 469
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++|+|++..+ + ...+..++.+...+ ++||+|+.+..+... ....+...++ .+.+.+
T Consensus 82 d~vi~V~D~t~~e------------~-~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg----~~vi~~ 143 (272)
T 3b1v_A 82 DSILNVVDATNLE------------R-NLYLTTQLIETGIPVTIALNMIDVLDGQGKKI-NVDKLSYHLG----VPVVAT 143 (272)
T ss_dssp SEEEEEEEGGGHH------------H-HHHHHHHHHHTCSCEEEEEECHHHHHHTTCCC-CHHHHHHHHT----SCEEEC
T ss_pred CEEEEEecCCchH------------h-HHHHHHHHHhcCCCEEEEEEChhhCCcCCcHH-HHHHHHHHcC----CCEEEE
Confidence 9999999876311 1 11233344444444 899999986655542 3344444433 378999
Q ss_pred EccCCCCHHHHHHHHHhh
Q psy17315 250 VGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~ 267 (561)
||++|.|+..|++++.+.
T Consensus 144 SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 144 SALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp BTTTTBSHHHHHHHHHHS
T ss_pred EccCCCCHHHHHHHHHHH
Confidence 999999999999999875
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=158.44 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=107.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc------ccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE------GQGLGNAFLSH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~------~~~~~~~~l~~ 168 (561)
.+|+++|.||||||||||+|+|....++++||+|.+...+.. .+..+.++||||+....+. .+.+...++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~- 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI- 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh-
Confidence 479999999999999999999998889999999988766532 3457999999999765421 1122222221
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+.+|++++|+|++.. .. ...+..++.+...+ |+||+|+.+..+... ....+...++ .+
T Consensus 81 ~~~~d~vi~VvDas~~------------~~-~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg----~~ 142 (256)
T 3iby_A 81 DLEYDCIINVIDACHL------------ER-HLYLTSQLFELGKPVVVALNMMDIAEHRGISI-DTEKLESLLG----CS 142 (256)
T ss_dssp HSCCSEEEEEEEGGGH------------HH-HHHHHHHHTTSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHC----SC
T ss_pred hCCCCEEEEEeeCCCc------------hh-HHHHHHHHHHcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcC----CC
Confidence 1789999999987621 11 11233344444444 899999987655433 2233333332 47
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..|++++.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 143 VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 8999999999999999999876
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-16 Score=158.22 Aligned_cols=164 Identities=20% Similarity=0.127 Sum_probs=112.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--c-CCeEEEEeCCCcccCCcc---cccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--V-PAFLNVVDIAGLVKGAAE---GQGLGNAFLS 167 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~-~~~i~l~DtpG~~~~~~~---~~~~~~~~l~ 167 (561)
....|+++|.||||||||+|+|++.+ ..+++.|++|++...+.. . +.++.++||||+..+... +..+......
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 34689999999999999999999998 668999999998766532 2 568999999999865411 1223333456
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc-CC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV-GT 243 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~-~~ 243 (561)
.++.+|++++|+|++.... ......+.+.+.....+ |+||+|+.+.. ......+..+.... ..
T Consensus 89 ~l~~aD~il~VvD~~~~~~----------~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~---~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWR----------PRDEEIYQNFIKPLNKPVIVVINKIDKIGPA---KNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHCSEEEEEEETTTBSC----------HHHHHHHHHHTGGGCCCEEEEEECGGGSSSG---GGGHHHHHHHHHHCTTC
T ss_pred HhhcCCEEEEEEeCCCCCC----------chhHHHHHHHHHhcCCCEEEEEECccCCCCH---HHHHHHHHHHHHhccCC
Confidence 6789999999998863210 11111112222222223 89999997311 11233344555555 45
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
...+.+|+++|.|+..|++++.+.....
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 6789999999999999999999986543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-16 Score=163.35 Aligned_cols=160 Identities=21% Similarity=0.176 Sum_probs=118.6
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCCh----HHHHHHHHH-HHhcCCC---c--cc
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGP----KAPKRRKQH-LSDKLRP---K--AD 71 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~----~~~~~w~~~-l~~~~~~---~--~~ 71 (561)
+++|.|+|+++| .++.++.+.+ +.+++|.+ +||.++ +..+.|+.. +++.+.. + ++
T Consensus 73 ~lil~VvD~~d~------~~s~~~~l~~----~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 73 ALVVNIVDIFDF------NGSFIPGLPR----FAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp CEEEEEEETTCS------GGGCCSSHHH----HCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred cEEEEEEECCCC------CCchhhHHHH----HhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 578999999999 8999999988 67788887 999875 457788754 5666653 2 66
Q ss_pred cccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcC------CCcccCCCcccccCccccccCCeEEE
Q psy17315 72 SKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS------SAAAENFPFCTIDPNENNKVPAFLNV 145 (561)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~------~~~~~~~~~~T~~~~~~~~~~~~i~l 145 (561)
+..+.+............ .+.+++++|.||||||||||+|++. ...+++.||+|++... ...+..+.+
T Consensus 143 A~~g~gi~~L~~~I~~~~-----~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~-~~~~~~~~l 216 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYR-----EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE-IPLESGATL 216 (369)
T ss_dssp TTTTBTHHHHHHHHHHHH-----TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE-EECSTTCEE
T ss_pred CCCCCCHHHHHHHHHhhc-----ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE-EEeCCCeEE
Confidence 666655543221111111 2357999999999999999999987 3778999999998765 334556999
Q ss_pred EeCCCcccCCcccccccccccccc---ccCCEEEEEeccc
Q psy17315 146 VDIAGLVKGAAEGQGLGNAFLSHI---SACDAIFHLCKEK 182 (561)
Q Consensus 146 ~DtpG~~~~~~~~~~~~~~~l~~i---~~~D~il~VvD~~ 182 (561)
+||||+..+......+....+..+ +..|.+++++|+.
T Consensus 217 iDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 217 YDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEG 256 (369)
T ss_dssp EECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTT
T ss_pred EeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCC
Confidence 999999876544445555665555 7889999999874
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-16 Score=171.72 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=134.9
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--cccccccC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKKKMG 77 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~~~~ 77 (561)
.+.+|-|+|++.+ ++.....+.+. .-..++|.+ +|+.+.. ..+.+++. .+. .. +++..+.+
T Consensus 103 ad~il~VvD~~~~------~~~~d~~l~~~--l~~~~~pvilV~NK~D~~~~~--~~~~e~~~-lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 103 ADVIIFMVNGREG------VTAADEEVAKI--LYRTKKPVVLAVNKLDNTEMR--ANIYDFYS-LGFGEPYPISGTHGLG 171 (456)
T ss_dssp CSEEEEEEESSSC------SCHHHHHHHHH--HTTCCSCEEEEEECC-----------CCSGG-GSSSSEEECCTTTCTT
T ss_pred CCEEEEEEeCCCC------CChHHHHHHHH--HHHcCCCEEEEEECccchhhh--hhHHHHHH-cCCCceEEeecccccc
Confidence 4678999999998 66655555441 111355665 8887542 22222222 222 11 55555544
Q ss_pred CCCch-hhhHhhh----hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCC
Q psy17315 78 PKKTD-EGEKKML----LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~-~~~~~~~----~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~Dtp 149 (561)
....- ....... .......++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.+||||
T Consensus 172 v~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~ 251 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 251 (456)
T ss_dssp HHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGG
T ss_pred hHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECC
Confidence 33311 1000000 1112356899999999999999999999887 77899999999876542 234579999999
Q ss_pred CcccCCccc----cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccC
Q psy17315 150 GLVKGAAEG----QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKK 222 (561)
Q Consensus 150 G~~~~~~~~----~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~ 222 (561)
|+....... .......+.+++.||++++|+|++.. ..+.-..+...+.+...+ |+||+|+.+
T Consensus 252 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~-----------~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 252 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG-----------IIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 320 (456)
T ss_dssp GTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC-----------CCHHHHHHHHHHHHTTCEEEEEEECGGGSC
T ss_pred CCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC-----------cCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 987543211 11112234567899999999987631 011111222333333333 899999985
Q ss_pred cCCCCC-ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 223 KMGPKK-TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 223 ~~~~~~-~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...... .....+..........+.+.+||++|.|+..+++++.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence 433211 111223333344456789999999999999999999875
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-16 Score=156.70 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=108.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccc--cccccccc---cc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEG--QGLGNAFL---SH 168 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~--~~~~~~~l---~~ 168 (561)
.++|+++|.||||||||+|+|++....++++||+|.+...+.. .+..+.++||||+....... ..+...+. -.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 4789999999999999999999998888999999988765422 34579999999997644211 01111111 12
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+.+|++++|+|++. . +....+..++.+...+ |+||+|+.+..+... ....+....+ .+
T Consensus 83 ~~~~d~ii~VvD~~~------------~-~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg----~~ 144 (274)
T 3i8s_A 83 SGDADLLINVVDASN------------L-ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRI-EIDALSARLG----CP 144 (274)
T ss_dssp HTCCSEEEEEEEGGG------------H-HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHT----SC
T ss_pred hcCCCEEEEEecCCC------------h-HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHH-HHHHHHHhcC----CC
Confidence 378999999998762 1 1112233445555544 899999986544322 2233333332 47
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+|+++|.|+..|++++.+...
T Consensus 145 ~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 145 VIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp EEECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999988643
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.7e-16 Score=156.04 Aligned_cols=157 Identities=21% Similarity=0.138 Sum_probs=106.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|++.+ ..+++.|++|++...+.. .+.++.++||||+..+... +..+...+..+++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999988 567889999988655422 3558999999999865421 112333445678999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|++..- ... -..+.+.+... ..+ |+||+|+..... .....+..+ ......+
T Consensus 88 d~il~VvD~~~~~---------~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~---~~~~~~~ 150 (301)
T 1wf3_A 88 NAVVWVVDLRHPP---------TPE--DELVARALKPLVGKVPILLVGNKLDAAKYPE---EAMKAYHEL---LPEAEPR 150 (301)
T ss_dssp SEEEEEEETTSCC---------CHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHH---HHHHHHHHT---STTSEEE
T ss_pred CEEEEEEECCCCC---------ChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchH---HHHHHHHHh---cCcCcEE
Confidence 9999999986321 000 01122233332 222 899999974211 001112222 3344679
Q ss_pred EEEccCCCCHHHHHHHHHhhccC
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
++|+++|.|++.|++.+.+..+.
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred EEeCCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999987644
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-16 Score=164.38 Aligned_cols=241 Identities=15% Similarity=0.100 Sum_probs=136.9
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhh--cCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--ccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI--SDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKK 74 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~--~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~ 74 (561)
..+.+|-|+|++.+ .+..+..+.+ +. .++|.+ +|+.+......|.++ .+.+. .+ +++..
T Consensus 81 ~ad~il~V~D~~~~------~~~~d~~i~~----~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-~~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 81 EADLVLFVVDGKRG------ITKEDESLAD----FLRKSTVDTILVANKAENLREFEREVKPEL-YSLGFGEPIPVSAEH 149 (439)
T ss_dssp TCSEEEEEEETTTC------CCHHHHHHHH----HHHHHTCCEEEEEESCCSHHHHHHHTHHHH-GGGSSCSCEECBTTT
T ss_pred hCCEEEEEEECCCC------CCHHHHHHHH----HHHHcCCCEEEEEeCCCCccccHHHHHHHH-HhcCCCCEEEEeccC
Confidence 35778999999998 6655544444 22 356666 898643112222232 23333 22 67777
Q ss_pred ccCCCCch-hhhHh-hhhc----C---CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCe
Q psy17315 75 KMGPKKTD-EGEKK-MLLG----R---VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAF 142 (561)
Q Consensus 75 ~~~~~~~~-~~~~~-~~~~----~---~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~ 142 (561)
+.+....- ..... .... . ....++|+++|.||||||||+|+|++.. ..++++||+|+++..+. ..+..
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 66654421 11111 1011 1 2345899999999999999999999987 67899999999987653 23457
Q ss_pred EEEEeCCCcccCCccc-c--c--cccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---h
Q psy17315 143 LNVVDIAGLVKGAAEG-Q--G--LGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---V 214 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~-~--~--~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v 214 (561)
+.++||||+....... + . .....+.+++.+|++++|+|++.... ... ..+...+...... +
T Consensus 230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~----------~~~-~~i~~~l~~~~~~~ilv 298 (439)
T 1mky_A 230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT----------RQD-QRMAGLMERRGRASVVV 298 (439)
T ss_dssp EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC----------HHH-HHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC----------HHH-HHHHHHHHHcCCCEEEE
Confidence 8999999985432211 0 0 11122456788999999998763110 011 1122233333333 8
Q ss_pred hccccccCcCCCCC-ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 215 DAKADSKKKMGPKK-TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 215 ~NK~D~~~~~~~~~-~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+||+|+.+...... .....+..........+.+.+||++|.|+..|++.+.+.
T Consensus 299 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 299 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp EECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred EECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 99999975322110 001112222233345678999999999999999999765
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-16 Score=169.62 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=132.5
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--cccccccC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKKKMG 77 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~~~~ 77 (561)
.+.+|-|+|++.+ .+.....+.+. .-..++|.+ +|+.+.+. ...+++ +.+. .+ +++..+.+
T Consensus 83 ad~il~vvD~~~~------~~~~d~~~~~~--l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 83 ADVIIFMVNGREG------VTAADEEVAKI--LYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp CSEEEEEEETTTC------SCHHHHHHHHH--HTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred CCEEEEEEeCCCC------CCHHHHHHHHH--HHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCC
Confidence 5678999999998 65544444330 011356666 89876431 111111 2222 22 66666655
Q ss_pred CCCchh-hhHhhhh-c---CCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCC
Q psy17315 78 PKKTDE-GEKKMLL-G---RVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~~-~~~~~~~-~---~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~Dtp 149 (561)
....-. ....... . .....++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.+||||
T Consensus 152 v~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~ 231 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 231 (436)
T ss_dssp HHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHH
T ss_pred hHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECC
Confidence 443211 1110000 0 12345899999999999999999999987 56899999999875532 234579999999
Q ss_pred CcccCCccccccc----cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccC
Q psy17315 150 GLVKGAAEGQGLG----NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKK 222 (561)
Q Consensus 150 G~~~~~~~~~~~~----~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~ 222 (561)
|+.........+. ...+.+++.+|++++|+|++.... ..... +...+.+.... |+||+|+.+
T Consensus 232 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s----------~~~~~-~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 232 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII----------EQDKR-IAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC----------HHHHH-HHHHHHHTTCEEEEEEECGGGSC
T ss_pred CcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc----------HHHHH-HHHHHHHcCCcEEEEEECccCCC
Confidence 9975433211111 112356788999999999863211 11111 12223333333 899999985
Q ss_pred cCCCCC-ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 223 KMGPKK-TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 223 ~~~~~~-~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...... .....+..........+.+.+||++|.|+..+++.+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 301 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp CCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 432210 011122333333445678999999999999999998875
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=151.23 Aligned_cols=154 Identities=24% Similarity=0.314 Sum_probs=108.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc--cccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||||+|++....++++||+|.+...+.. .+..+.++||||....... .+.+...++.. ..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~ 83 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK-GD 83 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH-SC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh-cC
Confidence 4789999999999999999999988778999999988765432 2457999999999754431 11222333321 57
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++..+ +.+ .+..++.+...+ ++||+|+.+..+... +...+...++ .+.+.
T Consensus 84 ~d~ii~V~D~t~~~------------~~~-~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg----~~vi~ 145 (258)
T 3a1s_A 84 ADLVILVADSVNPE------------QSL-YLLLEILEMEKKVILAMTAIDEAKKTGMKI-DRYELQKHLG----IPVVF 145 (258)
T ss_dssp CSEEEEEEETTSCH------------HHH-HHHHHHHTTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHC----SCEEE
T ss_pred CCEEEEEeCCCchh------------hHH-HHHHHHHhcCCCEEEEEECcCCCCccchHH-HHHHHHHHcC----CCEEE
Confidence 89999999886311 111 133344444444 899999987665543 3334444333 47899
Q ss_pred EEccCCCCHHHHHHHHHhhc
Q psy17315 249 IVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~ 268 (561)
+|+++|.|+..|++++.+..
T Consensus 146 ~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 146 TSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHh
Confidence 99999999999999998753
|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-16 Score=125.69 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=71.5
Q ss_pred HHcccCceeccccCCCce----ecccc-CCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCC
Q psy17315 461 GYKSLQLQYFFTAGQDEV----KAWTI-QKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGR 535 (561)
Q Consensus 461 ~~~~l~li~~~t~~~~ev----~a~~~-~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~ 535 (561)
.|+.|+||.+||+.+++. ++.++ ++|+|+.|+|+.||+||.+.|.+|.||+.+- +..+|++|.
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~sa------------K~~~qrVgl 72 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSV------------KHNPQKVGK 72 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTS------------SSSSEEECS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccc------------cCCCEECCC
Confidence 489999999999877763 88999 9999999999999999999999999999873 334699999
Q ss_pred ceeecCCCEEEEEecCC
Q psy17315 536 AYTVEDGDIIFFKFNAG 552 (561)
Q Consensus 536 ~~~~~d~di~~~~~~~~ 552 (561)
+|+|+|||||+|.-..+
T Consensus 73 dh~L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 73 DHTLEDEDVIQIVKKSG 89 (93)
T ss_dssp SCCCCSSEEECEEECCS
T ss_pred CcEecCCCEEEEEeCCC
Confidence 99999999999987644
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=161.90 Aligned_cols=154 Identities=27% Similarity=0.318 Sum_probs=107.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcc-cCCccccccc-ccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLV-KGAAEGQGLG-NAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~-~~~~~~~~~~-~~~l~~i 169 (561)
.+++|+++|.||||||||+|+|++.. ..++++||+|+++.... ..+..+.++||||+. ......+.++ ...+.++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 45899999999999999999999987 67899999999987652 234579999999997 5543333332 2346678
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+.+|++++|+|++..... +..+.+ +.+ . ..+ |.||+|+.+. .....+..... ...+.
T Consensus 322 ~~aD~vl~VvD~s~~~s~----------~~~~il-~~l-~-~~piivV~NK~DL~~~-----~~~~~~~~~~~--~~~~~ 381 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDE----------EDRKIL-ERI-K-NKRYLVVINKVDVVEK-----INEEEIKNKLG--TDRHM 381 (482)
T ss_dssp HHCSEEEEEEETTSCCCH----------HHHHHH-HHH-T-TSSEEEEEEECSSCCC-----CCHHHHHHHHT--CSTTE
T ss_pred hcccEEEEEecCCCCCCH----------HHHHHH-HHh-c-CCCEEEEEECcccccc-----cCHHHHHHHhc--CCCcE
Confidence 999999999997642211 111211 112 1 122 8999999742 11223333221 12468
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.|+++|.+..
T Consensus 382 i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 382 VKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EEEEGGGTCCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998864
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-15 Score=139.31 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=104.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccc------ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEG------QGLGNAFLS 167 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~ 167 (561)
..++|+++|.+|||||||+|+|++.. ..+++.+++|..... ...+..+.++||||+....... ..+...++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF-YLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE-EEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE-EEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 44799999999999999999999987 677888998887654 3345679999999975432110 112223344
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
....+|++++|+|++... . .....+...+.....+ |+||+|+....... .....+..........
T Consensus 101 ~~~~~~~vi~v~d~~~~~--------~---~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPP--------Q---DSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERA-KKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HCTTEEEEEEEEETTSCC--------C---HHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHHSSCCS
T ss_pred cCcCceEEEEEecCCCCC--------C---HHHHHHHHHHHHcCCCEEEEEEChhcCChHHHH-HHHHHHHHHHhhcCCC
Confidence 456679999999875211 0 0011122333333333 89999997432110 0111223333333456
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHHHHHh
Confidence 889999999999999999998763
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-15 Score=134.67 Aligned_cols=152 Identities=21% Similarity=0.312 Sum_probs=96.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccc--cccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEG--QGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|++....++.+|++|.+...+.. .+..+.++||||........ ..+...++. ..++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~ 82 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKP 82 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cCCC
Confidence 689999999999999999999987777888998887655422 24579999999987543211 111122221 1378
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++|+|++..+ ....+..++.+...+ |+||+|+........ ....+....+ ...+.+
T Consensus 83 ~~~i~v~D~~~~~-------------~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~----~~~~~~ 144 (165)
T 2wji_A 83 DLVVNIVDATALE-------------RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI-DVDKLEKILG----VKVVPL 144 (165)
T ss_dssp SEEEEEEETTCHH-------------HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHT----SCEEEC
T ss_pred CEEEEEecCCchh-------------HhHHHHHHHHhcCCCEEEEEEchHhccccChhh-HHHHHHHHhC----CCEEEE
Confidence 9999999876311 111112223332333 899999975544332 2223332222 467999
Q ss_pred EccCCCCHHHHHHHHHhh
Q psy17315 250 VGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~ 267 (561)
|+++|.|+..+++++.+.
T Consensus 145 SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 145 SAAKKMGIEELKKAISIA 162 (165)
T ss_dssp BGGGTBSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 999999999999999875
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-15 Score=158.45 Aligned_cols=159 Identities=19% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccc-cccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGL-GNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~i 169 (561)
+.+++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.+|||||+.......+.+ .......+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 356899999999999999999999986 77899999999976542 234579999999997543221111 13346678
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+.+|++++|+|++.... ..++....+.+..+... |.||+|+...... ..+.+... ...+
T Consensus 311 ~~aD~vl~VvD~s~~~s----------~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~------~~~~l~~~-~~~~ 373 (476)
T 3gee_A 311 AEADLILYLLDLGTERL----------DDELTEIRELKAAHPAAKFLTVANKLDRAANADA------LIRAIADG-TGTE 373 (476)
T ss_dssp SSCSEEEEEEETTTCSS----------GGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHH------HHHHHHHH-HTSC
T ss_pred ccCCEEEEEEECCCCcc----------hhhhHHHHHHHHhcCCCCEEEEEECcCCCCccch------hHHHHHhc-CCCc
Confidence 99999999999864221 11122222223332222 8999999743221 11112221 1256
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+|+++|.|++.|+++|.+...
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 899999999999999999988753
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=138.16 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=99.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccc-ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGL-GNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~i~ 170 (561)
.+.+|+++|.||||||||+|+|++.. ..++++|++|++..... ..+..+.++||||+......-... ....+..++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 45789999999999999999999877 56788999998765442 223468999999996533211100 111234578
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..... .....+ ..+.... .+ |+||+|+.+... .. ......
T Consensus 83 ~ad~~i~v~D~~~~~s~----------~~~~~~-~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~----------~~~~~~ 140 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAV----------DPAEIW-PEFIARLPAKLPITVVRNKADITGETL-GM----------SEVNGH 140 (172)
T ss_dssp TCSEEEEEEETTTCCCC----------SHHHHC-HHHHHHSCTTCCEEEEEECHHHHCCCC-EE----------EEETTE
T ss_pred hCCEEEEEEECCCCCCH----------HHHHHH-HHHHHhcccCCCEEEEEECccCCcchh-hh----------hhccCC
Confidence 99999999998643211 111111 1222221 12 899999964210 00 011234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998864
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-15 Score=146.25 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=104.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccc------ccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEG------QGLGN 163 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~------~~~~~ 163 (561)
..++|+++|.+|||||||+|+|++.. ..+++.||+|.+...... .+..+.+|||||+....... ..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45799999999999999999999986 578889999988654322 23579999999986542211 11222
Q ss_pred ccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 164 AFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 164 ~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
.++.....+|++++|+|++..- ...-..+...+.....+ |+||+|+........ ....+......
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~-----------~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~l~~ 175 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPL-----------TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESIN-ALRATQKSLDA 175 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC-----------CHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHH-HHHHHHHHHHH
T ss_pred HHHhcCcCcCEEEEEEeCCCCC-----------CHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHH-HHHHHHHHHHh
Confidence 3445556689999999875210 00001112223222223 899999974321100 01112222222
Q ss_pred ------cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 ------VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ------~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+.+|+++|.|+..|+++|.+..
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 2455789999999999999999998874
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-15 Score=156.43 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=109.5
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChH----HHHHHHHH-HHhcCCC---c--cc
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPK----APKRRKQH-LSDKLRP---K--AD 71 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~----~~~~w~~~-l~~~~~~---~--~~ 71 (561)
+.+|.|+|+++| ..+.++.+.+ +.+++|.+ +||.+.+ ..++|+++ ++..+.. + ++
T Consensus 71 ~~il~VvD~~d~------~~~~~~~l~~----~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 140 (368)
T 3h2y_A 71 ALVVKIVDIFDF------NGSWLPGLHR----FVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLIS 140 (368)
T ss_dssp CEEEEEEETTSH------HHHCCTTHHH----HSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred cEEEEEEECCCC------cccHHHHHHH----HhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEe
Confidence 478999999999 8999999988 67788877 9998754 57788755 4555552 2 56
Q ss_pred cccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcC-------CCcccCCCcccccCccccccCCeEE
Q psy17315 72 SKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS-------SAAAENFPFCTIDPNENNKVPAFLN 144 (561)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~-------~~~~~~~~~~T~~~~~~~~~~~~i~ 144 (561)
+..+.+........... ..+.+++++|.||||||||+|+|++. ...+++.||+|++... ...+..+.
T Consensus 141 A~~g~gi~~L~~~l~~~-----~~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~-~~~~~~~~ 214 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYY-----RGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID-IPLDEESS 214 (368)
T ss_dssp TTTCTTHHHHHHHHHHH-----HTTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE-EESSSSCE
T ss_pred CCCCcCHHHHHhhhhhh-----cccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE-EEecCCeE
Confidence 66665554422111111 12367999999999999999999986 2457899999998765 33445699
Q ss_pred EEeCCCcccCCccccccccccccc---cccCCEEEEEeccc
Q psy17315 145 VVDIAGLVKGAAEGQGLGNAFLSH---ISACDAIFHLCKEK 182 (561)
Q Consensus 145 l~DtpG~~~~~~~~~~~~~~~l~~---i~~~D~il~VvD~~ 182 (561)
++||||+..+......+....+.. ....+.+++++|+.
T Consensus 215 liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 255 (368)
T 3h2y_A 215 LYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEE 255 (368)
T ss_dssp EEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTT
T ss_pred EEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCC
Confidence 999999986653333344333332 46678889999764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-15 Score=133.57 Aligned_cols=152 Identities=22% Similarity=0.220 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
++|+++|.+|||||||+|+|.+.. ..+.+.|++|.+..... ..+..+.++||||..........+...+...++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 579999999999999999999887 45678888888765432 234579999999987543211112233345678999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIV 250 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~is 250 (561)
++++|+|++... .... ..+.+.+.....+ |+||+|+.+.. .....+. .......+.+|
T Consensus 82 ~~i~v~d~~~~~--------~~~~---~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------~~~~~~~-~~~~~~~~~~S 142 (161)
T 2dyk_A 82 VVLFAVDGRAEL--------TQAD---YEVAEYLRRKGKPVILVATKVDDPKHE-------LYLGPLY-GLGFGDPIPTS 142 (161)
T ss_dssp EEEEEEESSSCC--------CHHH---HHHHHHHHHHTCCEEEEEECCCSGGGG-------GGCGGGG-GGSSCSCEECB
T ss_pred EEEEEEECCCcc--------cHhH---HHHHHHHHhcCCCEEEEEECcccccch-------HhHHHHH-hCCCCCeEEEe
Confidence 999999876311 0000 1122233332333 89999998542 1111222 22333679999
Q ss_pred ccCCCCHHHHHHHHHhh
Q psy17315 251 GVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~ 267 (561)
+++|.|+..+++++.+.
T Consensus 143 a~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 143 SEHARGLEELLEAIWER 159 (161)
T ss_dssp TTTTBSHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHh
Confidence 99999999999999875
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=130.30 Aligned_cols=151 Identities=18% Similarity=0.095 Sum_probs=85.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc-ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN-KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.++|+++|.||||||||+|+|++.. ..+.+.+|+|....... .....+.++||||...... + ....++.+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~~~ 74 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW----L---PGHCMAMGD 74 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----------------------CC
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchh----h---hhhhhhhCC
Confidence 3689999999999999999999877 56667778776532211 1234688999999754331 1 223458899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.. ..+..+..+...+.... .+ |+||+|+.+...... .....+... ...+.
T Consensus 75 ~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~-~~~~~ 140 (166)
T 3q72_A 75 AYVIVYSVTDK----------GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV---DEGRACAVV-FDCKF 140 (166)
T ss_dssp EEEEEEETTCH----------HHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH---HHHHHHHHH-TTCEE
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH---HHHHHHHHH-hCCcE
Confidence 99999987632 12333333333333321 12 899999986544322 222222222 22467
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|++.+++++.+.
T Consensus 141 ~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 141 IETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp EECBGGGTBSHHHHHHHHHHH
T ss_pred EEeccCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-15 Score=137.77 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCccc---c---ccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEG---Q---GLGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~---~---~~~~~~l 166 (561)
..++|+++|.+|||||||+|+|++.. ..+++.+|+|...... ..+..+.+|||||+....... . .+...++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY-IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE-EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE-EECCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999876 5677889988876542 335579999999975432110 0 1122333
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.....+|++++|+|++.... ..... +...+.....+ |+||+|+........ ....+.........
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~----------~~~~~-~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPS----------NDDVQ-MYEFLKYYGIPVIVIATKADKIPKGKWDK-HAKVVRQTLNIDPE 168 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCC----------HHHHH-HHHHHHHTTCCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCCTT
T ss_pred hhhhcCCEEEEEEECCCCCC----------HHHHH-HHHHHHHcCCCEEEEEECcccCChHHHHH-HHHHHHHHHcccCC
Confidence 33445599999998763210 01111 12233333333 899999974322110 01122222222234
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+.+|+++|.|+..+++++.+.
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CceEEEEccCCCCHHHHHHHHHHH
Confidence 577999999999999999999865
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=146.81 Aligned_cols=159 Identities=19% Similarity=0.118 Sum_probs=105.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcc-cCCc-ccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLV-KGAA-EGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~-~~~~-~~~~~~~~~l~~i~~ 171 (561)
..|+++|.||||||||+|+|++.. ..+++.|++|++...+. ..+.++.++||||+. .+.. .+..+.......++.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 479999999999999999999988 56788899998765542 234579999999986 3221 111233344667899
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++. + ... -..+.+.+.....+ ++||+|..... ......+..+.........++
T Consensus 89 ~D~vl~Vvd~~~--~--------~~~--~~~i~~~l~~~~~P~ilvlNK~D~~~~~---~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 89 VELVIFVVEGTR--W--------TPD--DEMVLNKLREGKAPVILAVNKVDNVQEK---ADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp EEEEEEEEETTC--C--------CHH--HHHHHHHHHSSSSCEEEEEESTTTCCCH---HHHHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEEEeCCC--C--------CHH--HHHHHHHHHhcCCCEEEEEECcccCccH---HHHHHHHHHHHHhcCcCceEE
Confidence 999999998752 0 000 01122223222233 89999997310 011122333433334346899
Q ss_pred EEccCCCCHHHHHHHHHhhccC
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~ 270 (561)
+|+.+|.|...|++.+.+..+.
T Consensus 154 iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 154 ISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CCTTTTTTHHHHHHHHHTTCCB
T ss_pred EECCCCCCHHHHHHHHHHhCCc
Confidence 9999999999999999987644
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=144.37 Aligned_cols=154 Identities=26% Similarity=0.291 Sum_probs=106.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc--ccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG--QGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||+|+|+|....+++.||+|.+...+. ..+..+.++||||+....... ..+...++ ....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFI-LDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHH-HTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhh-hccC
Confidence 368999999999999999999998888889999998865542 234568999999997544311 11122222 1267
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
+|++++|+|++.. .+.+. +..++.+.. .+ ++||+|+.+..+.... ...+...++ .+.+
T Consensus 82 ~d~vi~v~D~~~~------------~~~~~-~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg----~~~~ 143 (271)
T 3k53_A 82 ADVIVDIVDSTCL------------MRNLF-LTLELFEMEVKNIILVLNKFDLLKKKGAKID-IKKMRKELG----VPVI 143 (271)
T ss_dssp CSEEEEEEEGGGH------------HHHHH-HHHHHHHTTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHS----SCEE
T ss_pred CcEEEEEecCCcc------------hhhHH-HHHHHHhcCCCCEEEEEEChhcCcccccHHH-HHHHHHHcC----CcEE
Confidence 9999999987631 12222 223344444 33 8999998866554432 333433333 4789
Q ss_pred EEEccCCCCHHHHHHHHHhhc
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~ 268 (561)
++||++|.|+..+++.+.+..
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999999998763
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=156.03 Aligned_cols=156 Identities=21% Similarity=0.162 Sum_probs=95.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccc-ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGL-GNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~i~ 170 (561)
.+++|+++|.||||||||+|+|++.. ..+++.||+|++..... ..+..+.++||||+......-+.+ .......++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 46899999999999999999999886 66888999999875432 234578999999996543221111 133456789
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-cchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
.+|++++|+|++.... ... ..+.+.+... ...|.||+|+........ +.......+.+.+
T Consensus 303 ~aD~vl~VvD~s~~~~----------~~~-~~i~~~l~~~piivV~NK~Dl~~~~~~~~--------~~~~~~~~~~i~i 363 (462)
T 3geh_A 303 TADLVLLTIDAATGWT----------TGD-QEIYEQVKHRPLILVMNKIDLVEKQLITS--------LEYPENITQIVHT 363 (462)
T ss_dssp SCSEEEEEEETTTCSC----------HHH-HHHHHHHTTSCEEEEEECTTSSCGGGSTT--------CCCCTTCCCEEEE
T ss_pred cCCEEEEEeccCCCCC----------HHH-HHHHHhccCCcEEEEEECCCCCcchhhHH--------HHHhccCCcEEEE
Confidence 9999999998763110 000 1111111110 111899999975433210 1111134568999
Q ss_pred EccCCCCHHHHHHHHHhhcc
Q psy17315 250 VGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~ 269 (561)
|+++|.|++.|+++|.+...
T Consensus 364 SAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-14 Score=129.75 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=97.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccC--CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|+.|.+..... ..+ ..+.++||||..... ......++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 80 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR-------TITSTYYR 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS-------SCCGGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh-------hhHHHHhc
Confidence 4479999999999999999999988755555566655443221 112 368999999964322 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc--h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR--S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|++.. ..+..+..+...+..... + |+||+|+.+...... .....+.... ..+
T Consensus 81 ~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 146 (181)
T 3tw8_B 81 GTHGVIVVYDVTSA----------ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVET---EDAYKFAGQM-GIQ 146 (181)
T ss_dssp TCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCH---HHHHHHHHHH-TCC
T ss_pred cCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCH---HHHHHHHHHc-CCe
Confidence 89999999987632 122333323333333221 1 899999876543322 2222222222 237
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++.+..
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998763
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=139.17 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=99.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccc-c-ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQG-L-GNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~-~-~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++....+.+.+++|++...... ....+.+|||||.......... + ...+....+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 107 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAH 107 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhc
Confidence 45899999999999999999999988557788898887655421 2357999999999643221110 0 011122357
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcC-CC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG-TN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~-~~ 244 (561)
.+|++++|+|++..... ....... +...+... ..+ |+||+|+.............+..+..... ..
T Consensus 108 ~~d~~i~v~d~~~~~s~-------~~~~~~~-~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
T 2qu8_A 108 INGVILFIIDISEQCGL-------TIKEQIN-LFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI 179 (228)
T ss_dssp SSEEEEEEEETTCTTSS-------CHHHHHH-HHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred cccEEEEEEecccccCc-------chHHHHH-HHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence 78999999988632211 1011111 11222222 222 89999998654433222223344433321 25
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+++|.|+..++++|.+.
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHH
Confidence 67999999999999999999876
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=129.05 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.. ....+.+|++........ ....+.++||||..... ......++.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 78 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYRG 78 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCcC
Confidence 4789999999999999999999877 334555565543322111 22468999999984322 122344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .+..+..+.+.+...... |+||+|+.+..... ......+.... ...
T Consensus 79 ~~~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~---~~~~~~~~~~~-~~~ 144 (170)
T 1z0j_A 79 SAAAIIVYDITKEE----------TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM---ERDAKDYADSI-HAI 144 (170)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSC---HHHHHHHHHHT-TCE
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccC---HHHHHHHHHHc-CCE
Confidence 99999999876321 223333333334333222 67999998653332 22233332222 346
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++.+..
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 78999999999999999998864
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=127.42 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=93.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... .. ....+.++||||...... .....++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~ 77 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYYR 77 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSST
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHhc
Confidence 347899999999999999999998764333334333332211 11 123688999999643221 1233468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+.... ..
T Consensus 78 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 143 (170)
T 1z08_A 78 DSNGAILVYDITDED----------SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS---IQEAESYAESV-GA 143 (170)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC---HHHHHHHHHHT-TC
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC---HHHHHHHHHHc-CC
Confidence 899999999876321 2222322222232221 11 89999998654332 22233332222 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 144 KHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=125.59 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=96.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|.+.... ..+.++.+........ ....+.++||||..... ......++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ 75 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRN 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhcc
Confidence 368999999999999999999987733 3333443332221111 12368999999964322 123345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .+..+..+...+.... .+ ++||+|+.+..............+.... ...
T Consensus 76 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~ 144 (170)
T 1ek0_A 76 AQAALVVYDVTKPQ----------SFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK-GLL 144 (170)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-TCE
T ss_pred CcEEEEEEecCChH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc-CCE
Confidence 99999999876321 1222222222333221 11 8899999865433222223333332222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 145 FFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=130.23 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=99.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-ccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|++|.+..... ..+ ..+.++||||..... ......++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 87 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYR 87 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHh
Confidence 4579999999999999999999987755555555554443221 112 368999999964322 12334568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .+..+..+...+..... + |+||+|+.+...... .....+.... ..
T Consensus 88 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~ 153 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQE----------SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY---TTAKEFADSL-GI 153 (196)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH---HHHHHHHHHT-TC
T ss_pred hCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH---HHHHHHHHHc-CC
Confidence 899999999876321 22333333333433321 1 899999975544332 2222222222 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..++++|.+..
T Consensus 154 ~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 154 PFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998874
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=127.44 Aligned_cols=154 Identities=14% Similarity=0.049 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.||||||||+|+|++.. ....+.+|+|........ ....+.++||||...... ..+. ...++.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~~~~---~~~~~~~ 78 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK--SWSQ---ESCLQGG 78 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------CHHH---HHTTTSC
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccch--hhhH---HhhcccC
Confidence 4789999999999999999999877 445555666543222111 123688999999854211 1111 2345788
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+...+... ..+ |+||+|+.+...... .....+.... ...
T Consensus 79 ~~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~---~~~~~~~~~~-~~~ 144 (175)
T 2nzj_A 79 SAYVIVYSIADRG----------SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV---EEGRACAVVF-DCK 144 (175)
T ss_dssp SEEEEEEETTCHH----------HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH---HHHHHHHHHH-TSE
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH---HHHHHHHHHc-CCe
Confidence 9999999876321 223333333334332 122 899999986543322 2222222221 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998763
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=127.56 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc----CCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV----PAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~----~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.+|||||||+|+|++........|.++.+.... ... ...+.++||||...... .....+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~ 77 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK-------MLDKYI 77 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-------THHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-------hhhHHH
Confidence 457999999999999999999998763222222222222111 111 24799999999653321 223446
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh------cc---hhhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL------RR---SVDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~---~v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
+.+|++++|+|++..+ .++.+..+...+... .. -|+||+|+.+..... ......+...
T Consensus 78 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 144 (178)
T 2hxs_A 78 YGAQGVLLVYDITNYQ----------SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---PEKHLRFCQE 144 (178)
T ss_dssp TTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---HHHHHHHHHH
T ss_pred hhCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---HHHHHHHHHH
Confidence 8899999999876322 122333333333331 11 189999997543332 2222233222
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
. ....+.+|+++|.|+..++++|.+..+
T Consensus 145 ~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 145 N-GFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp H-TCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred c-CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2 236799999999999999999998754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=125.67 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=94.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCcccc-ccC---CeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNENN-KVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~~-~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.+|||||||+|+|++... .....|.++.+..... ..+ ..+.++||||..... ......+
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~ 81 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYY 81 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHc
Confidence 457999999999999999999998773 2333444444332211 112 368999999964322 1234456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
+.+|++++|+|++... .++.+..+...+..... + |+||+|+.+..... ......+.... .
T Consensus 82 ~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~ 147 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKA----------SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVK---REDGEKLAKEY-G 147 (180)
T ss_dssp GGCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSC---HHHHHHHHHHH-T
T ss_pred cCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccC---HHHHHHHHHHc-C
Confidence 8899999999876321 22333333333333221 1 89999998643332 22222222222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..+++++.+..
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=129.69 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=100.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++.. ....+.+|+|........ ....+.++||||..... ......++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-------SLAPMYYR 94 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-------hhhHHhhc
Confidence 45799999999999999999999876 345666676654332111 22468999999964322 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+.... .+ |+||+|+.+..... ......+.... ..
T Consensus 95 ~~d~iilV~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~---~~~~~~~~~~~-~~ 160 (192)
T 2fg5_A 95 GSAAAVIVYDITKQD----------SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP---LKDAKEYAESI-GA 160 (192)
T ss_dssp TCSEEEEEEETTCTH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHTT-TC
T ss_pred cCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC---HHHHHHHHHHc-CC
Confidence 899999999876322 2223333333343332 11 89999997533322 23333333322 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 679999999999999999999874
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=129.12 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=89.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|+++|.+|||||||+|+|++.. ....+..+.+.... ...+..+.++||||...... .+...++.+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 93 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--TIAGMTFTTFDLGGHIQARR-------VWKNYLPAI 93 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE--EETTEEEEEEEECC----CC-------GGGGGGGGC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEE--EECCEEEEEEECCCcHhhHH-------HHHHHHhcC
Confidence 345799999999999999999999876 33333334332211 12235789999999754332 223456789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhc----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV---- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~---- 241 (561)
|++++|+|++..+ .+..+......+... ..+ |+||+|+.+. .....+.......
T Consensus 94 d~~i~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~ 158 (198)
T 1f6b_A 94 NGIVFLVDCADHE----------RLLESKEELDSLMTDETIANVPILILGNKIDRPEA-----ISEERLREMFGLYGQTT 158 (198)
T ss_dssp SEEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-----CCHHHHHHHHTCTTTCC
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-----CCHHHHHHHhCcccccc
Confidence 9999999886322 112222111122111 112 8999999751 1233344333211
Q ss_pred ------------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 ------------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ------------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+..++++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 159 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23457899999999999999999764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-13 Score=124.23 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=93.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-c----cCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-K----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.+|||||||+|+|++........|..+.+..... . ....+.++||||..... ......+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 79 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFY 79 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHh
Confidence 4579999999999999999999987643333343333322211 1 12368999999964322 1233456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLG 239 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~ 239 (561)
+.+|++++|+|++... .+..+..+...+.... .+ |+||+|+....... .......+..
T Consensus 80 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v--~~~~~~~~~~ 147 (182)
T 1ky3_A 80 RGADCCVLVYDVTNAS----------SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV--SEKSAQELAK 147 (182)
T ss_dssp TTCCEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS--CHHHHHHHHH
T ss_pred hcCCEEEEEEECCChH----------HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC--CHHHHHHHHH
Confidence 8899999999876321 2233333333333221 11 89999996432221 2233344443
Q ss_pred hcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 240 RVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 240 ~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.......+.+|+++|.|+..++++|.+..
T Consensus 148 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 148 SLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 34556789999999999999999998763
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=126.25 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=94.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+..+++........ ....+.++||||..... ......++.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ 78 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRG 78 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccC
Confidence 478999999999999999999976622 2333444332222111 23468999999964322 123345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h-----hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++..+ .+..++.+...+..... . |+||+|+....... ......+... ....
T Consensus 79 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~~-~~~~ 144 (170)
T 1r2q_A 79 AQAAIVVYDITNEE----------SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD---FQEAQSYADD-NSLL 144 (170)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHH-TTCE
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC---HHHHHHHHHH-cCCe
Confidence 99999999876321 12223323233333211 1 66999997543322 2222222222 2346
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998864
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=124.82 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=94.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++...... ++.++...... .. ....+.++||||...... .....++.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~ 74 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLYMKN 74 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCS-CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHhcc
Confidence 36899999999999999999998653211 11121111111 11 123589999999754331 12234578
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .+..+..+.+.+... ..+ |+||+|+.+..... ......+.......
T Consensus 75 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~ 141 (167)
T 1c1y_A 75 GQGFALVYSITAQS----------TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG---KEQGQNLARQWCNC 141 (167)
T ss_dssp CSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC---HHHHHHHHHHTTSC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC---HHHHHHHHHHccCC
Confidence 99999999876321 223333333333332 112 89999997543322 23334444444456
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+++|.|+..+++++.+.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 142 AFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHH
T ss_pred cEEEecCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999875
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=128.40 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=98.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||...... .....++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 79 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-------ITSSYYR 79 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHhcc
Confidence 347999999999999999999998774444445444433221 1112 3689999999653321 2344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .+..+..+...+..... + |+||+|+.+..... ......+.... ..
T Consensus 80 ~~d~vilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 145 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQE----------SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE---YDVAKEFADAN-KM 145 (206)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC---HHHHHHHHHHT-TC
T ss_pred CCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC---HHHHHHHHHHc-CC
Confidence 899999999876321 22223333333333221 1 89999997543322 22223332222 34
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..+++++.+..
T Consensus 146 ~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 146 PFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=123.46 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=93.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++........|.++.+..... .. ...+.++||||..... ......++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ 75 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR-------TITTAYYRG 75 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS-------CCCHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh-------hhHHHHhcc
Confidence 478999999999999999999987754444555554432221 11 2368999999964322 123345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .++.+..+...+.... .+ |+||+|+.++.. .......+..... .+
T Consensus 76 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~-~~ 140 (170)
T 1g16_A 76 AMGIILVYDITDER----------TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV----TADQGEALAKELG-IP 140 (170)
T ss_dssp EEEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS----CHHHHHHHHHHHT-CC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc----CHHHHHHHHHHcC-Ce
Confidence 99999999876321 2233333333333332 12 899999943221 1222333332222 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++.+..
T Consensus 141 ~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 141 FIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=125.27 Aligned_cols=153 Identities=18% Similarity=0.095 Sum_probs=95.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|.+........|..+.+.... .. ....+.++||||...... .....++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 76 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-------ITKAYYR 76 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-------CCHHHHT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-------HHHHHhc
Confidence 357899999999999999999998764333333333332221 11 123689999999653321 2234467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|++..+ .++.+..+...+... ..+ |+||+|+.+..... ......+..... ..
T Consensus 77 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-~~ 142 (168)
T 1z2a_A 77 GAQACVLVFSTTDRE----------SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK---NEEAEGLAKRLK-LR 142 (168)
T ss_dssp TCCEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC---HHHHHHHHHHHT-CE
T ss_pred CCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC---HHHHHHHHHHcC-Ce
Confidence 899999999876321 122333232333222 112 89999997543322 223333332222 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 143 ~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 143 FYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=126.04 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=95.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c-c--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N-K--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~-~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... . . ....+.++||||..... ......++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 83 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYR 83 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhc
Confidence 457999999999999999999998763332223222221111 1 1 12368999999964322 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .+..+..+...+..... + |+||+|+.+..... ......+.... ..
T Consensus 84 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 149 (181)
T 2efe_B 84 GAAAAIIVFDVTNQA----------SFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT---AEDAQTYAQEN-GL 149 (181)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC---HHHHHHHHHHT-TC
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC---HHHHHHHHHHc-CC
Confidence 899999999876321 12223333333333321 1 89999997543322 22333333222 34
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999875
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=125.20 Aligned_cols=152 Identities=15% Similarity=0.092 Sum_probs=95.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++........|.++.+.... ...+ ..+.++||||..... ......++.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 86 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRD 86 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcC
Confidence 37899999999999999999998764444445554443222 1112 368999999964322 122344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .+..+..+...+.... .+ |+||+|+.+...... .......... ...
T Consensus 87 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 152 (179)
T 2y8e_A 87 STVAVVVYDITNTN----------SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST---EEGERKAKEL-NVM 152 (179)
T ss_dssp CSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH---HHHHHHHHHH-TCE
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH---HHHHHHHHHc-CCe
Confidence 99999999876321 1222322222222221 11 899999975443321 2222222221 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 153 ~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 153 FIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=126.42 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=96.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++..... .+..|++....... .....+.++||||..... ......++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 93 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR-------TITTAYYR 93 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC-------CSGGGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh-------hhHHHhcc
Confidence 34799999999999999999999877322 23333333221111 122468999999964322 22345568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+.... .+ |+||+|+.+..... ......+..... .
T Consensus 94 ~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-~ 159 (189)
T 2gf9_A 94 GAMGFLLMYDIANQE----------SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP---AEDGRRLADDLG-F 159 (189)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---HHHHHHHHHHHT-C
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCC---HHHHHHHHHHcC-C
Confidence 899999999876321 2233333333444332 12 89999997543332 222333332222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 160 ~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 160 EFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=126.47 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=93.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
...+|+++|.||||||||+|+|++.. ....+..+.+.... ...+..+.++||||...... .....++.+|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 92 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL--AIGNIKFTTFDLGGHIQARR-------LWKDYFPEVN 92 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEE--EETTEEEEEEECCCSGGGTT-------SGGGGCTTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEE--EECCEEEEEEECCCCHHHHH-------HHHHHHhcCC
Confidence 44689999999999999999999876 33333333332211 12235789999999854332 1234467899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhc-----
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----- 241 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----- 241 (561)
++++|+|++..+ .++.+......+... ..+ |+||+|+.+. .....+.......
T Consensus 93 ~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~ 157 (190)
T 1m2o_B 93 GIVFLVDAADPE----------RFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-----VSEAELRSALGLLNTTGS 157 (190)
T ss_dssp EEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-----CCHHHHHHHTTCSSCCC-
T ss_pred EEEEEEECCChH----------HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-----CCHHHHHHHhCCcccccc
Confidence 999999986422 122222222222211 111 8999999751 1233344433221
Q ss_pred ------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 ------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+..++++|.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 158 QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp --CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 23357899999999999999999764
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=122.60 Aligned_cols=150 Identities=16% Similarity=0.124 Sum_probs=92.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..++|+++|.+|||||||+|+|++.. ....+..+.+.... ......+.++||||..... ......++.+|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 76 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETV--TYKNLKFQVWDLGGLTSIR-------PYWRCYYSNTD 76 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEE--EETTEEEEEEEECCCGGGG-------GGGGGGCTTCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEE--EECCEEEEEEECCCChhhh-------HHHHHHhccCC
Confidence 45799999999999999999998766 33233233222111 1224579999999975322 12334568999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh--c--C
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--V--G 242 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~--~ 242 (561)
++++|+|++..+. +..+. .+...+.. ...+ |+||+|+.+.. ....+...... . .
T Consensus 77 ~ii~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~ 141 (171)
T 1upt_A 77 AVIYVVDSCDRDR----------IGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-----TSSEMANSLGLPALKDR 141 (171)
T ss_dssp EEEEEEETTCCTT----------HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHHTGGGCTTS
T ss_pred EEEEEEECCCHHH----------HHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-----CHHHHHHHhCchhccCC
Confidence 9999998763221 11111 11111211 1112 89999997532 12223222211 1 2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..+++++.+..
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 142 KWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 33678999999999999999998764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=129.31 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=96.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ... ...+.++||||..... ......++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~ 97 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-------SITQSYYR 97 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHGGGST
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHHh
Confidence 457999999999999999999998764433334433332221 111 2368999999964221 22345578
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .++.+..+...+..... + |+||+|+.+...... .....+... ...
T Consensus 98 ~~d~~i~v~D~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~---~~~~~~~~~-~~~ 163 (201)
T 2ew1_A 98 SANALILTYDITCEE----------SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQ---QRAEEFSEA-QDM 163 (201)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCH---HHHHHHHHH-HTC
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH---HHHHHHHHH-cCC
Confidence 999999999876322 22233333333333321 1 899999975443322 222222222 124
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 164 YYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998764
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=125.48 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=94.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+.+|.+.... ...+..+.++||||..... ......++.+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI--VINNTRFLMWDIGGQESLR-------SSWNTYYTNT 89 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEE--EETTEEEEEEEESSSGGGT-------CGGGGGGTTC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEE--EECCEEEEEEECCCCHhHH-------HHHHHHhccC
Confidence 356899999999999999999999876 34445555443221 1234579999999985332 2234556899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh--c--
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--V-- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~-- 241 (561)
|++++|+|++..+ .+..+.. +...+.. ...+ |+||+|+.... ....+...... .
T Consensus 90 d~ii~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~~ 154 (181)
T 2h17_A 90 EFVIVVVDSTDRE----------RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-----TVAEISQFLKLTSIKD 154 (181)
T ss_dssp CEEEEEEETTCTT----------THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCS
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-----CHHHHHHHhCcccccC
Confidence 9999999876321 1112211 1111211 1111 89999997421 22333333221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+..++++|.+.
T Consensus 155 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 155 HQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CceEEEEccCCCCcCHHHHHHHHHhh
Confidence 22367999999999999999999764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=124.24 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=96.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||..... ......++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 78 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR-------SLRTPFYR 78 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH-------HHHGGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhHHHHHh
Confidence 347899999999999999999998764433334333332111 1112 368999999964322 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
.+|++++|+|.+... .+..+..+...+.... .+ |+||+|+.++. ........+...
T Consensus 79 ~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~----~~~~~~~~~~~~ 144 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQ----------SFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ----VSTEEAQAWCRD 144 (177)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS----SCHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc----cCHHHHHHHHHh
Confidence 899999999876321 2233333333333221 12 89999997321 123334444433
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
......+.+|+++|.|+..+++++.+...
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 NGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 44567899999999999999999988753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-13 Score=125.13 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=97.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
...++|+++|.+|||||||+|+|++..... .+..+.+...... ......+.++||||..... ......++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 93 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYA 93 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhcc
Confidence 345899999999999999999999876321 2222221111000 0112347899999964322 22334568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcc--h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRR--S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~--~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|.+..+ .+..+ ..+...+..... + |+||+|+.+...... .......+.......
T Consensus 94 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 94 DSDVVLLCFAVNNRT----------SFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDV-TKQEGDDLCQKLGCV 162 (194)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCC-CHHHHHHHHHHHTCS
T ss_pred CCcEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcc-cHHHHHHHHHhcCCC
Confidence 899999999876322 22222 222333333321 1 899999985422211 233344444444444
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+++|.|+..+++++.+....
T Consensus 163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 163 AYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987543
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=124.22 Aligned_cols=150 Identities=10% Similarity=0.051 Sum_probs=97.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
....+|+++|.+|||||||+|+|++........|++|.+.... ...+..+.+|||||...... .....++.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 78 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT-------MRARGAQV 78 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-------SCCSSCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-------HHHHHHhh
Confidence 3567999999999999999999998876666677777665443 12345789999999754332 12345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcC------
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG------ 242 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~------ 242 (561)
+|++++|+|++... . ...++.+. .+.....+ |+||+|+.+. ....+........
T Consensus 79 ~d~~i~v~d~~~~~-------~---~~~~~~l~-~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~ 141 (178)
T 2lkc_A 79 TDIVILVVAADDGV-------M---PQTVEAIN-HAKAANVPIIVAINKMDKPEA------NPDRVMQELMEYNLVPEEW 141 (178)
T ss_dssp CCEEEEEEETTCCC-------C---HHHHHHHH-HHGGGSCCEEEEEETTTSSCS------CHHHHHHHHTTTTCCBTTT
T ss_pred CCEEEEEEECCCCC-------c---HHHHHHHH-HHHhCCCCEEEEEECccCCcC------CHHHHHHHHHhcCcChhHc
Confidence 99999999875311 0 11111111 11111222 8999999742 1122222211111
Q ss_pred --CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 --TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 --~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.+|+++|.|+..++++|.+.
T Consensus 142 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 142 GGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp TSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 1367899999999999999999875
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=129.40 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=94.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ... ...+.++||||..... ......++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~ 97 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYYR 97 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH-------HHHHHHhc
Confidence 347899999999999999999998763322333333222211 111 2368999999964322 12344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .++.+..+.+.+..... + |+||+|+....... ......+.......
T Consensus 98 ~~d~iilV~D~~~~~----------s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~---~~~~~~~~~~~~~~ 164 (192)
T 2il1_A 98 SAKGIILVYDITKKE----------TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT---RQQGEKFAQQITGM 164 (192)
T ss_dssp HCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHTSTTC
T ss_pred CCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---HHHHHHHHHhcCCC
Confidence 899999999876322 22333333333433322 1 89999997544332 22333444433455
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 165 ~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 165 RFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 779999999999999999998763
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=126.81 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=97.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+..... .. ...+.++||||...... .....++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 79 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-------LGVAFYR 79 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-------SCCGGGT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------hHHHHHh
Confidence 4579999999999999999999987743333344433322211 11 23689999999643221 2234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
.+|++++|+|++... .+..+..+...+.... .+ |+||+|+.++. ........+...
T Consensus 80 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~ 145 (207)
T 1vg8_A 80 GADCCVLVFDVTAPN----------TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ----VATKRAQAWCYS 145 (207)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC----SCHHHHHHHHHH
T ss_pred CCcEEEEEEECCCHH----------HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc----cCHHHHHHHHHh
Confidence 899999999876322 2233333333333221 12 89999997321 122333333332
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
......+.+|+++|.|+..++++|.+..
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3455789999999999999999998874
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=129.64 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=101.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc--cccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++....++.+|++|.+...+. ..+..+.++||||....... ...+...++.. ..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-~~ 85 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EK 85 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH-HC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc-cC
Confidence 468999999999999999999998767778899887765442 23457999999998754321 01122222211 35
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++. +.....+...+.....+ ++||+|+........ ....+....+ ...+.
T Consensus 86 ~~~~i~v~d~~~-------------~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~----~~~~~ 147 (188)
T 2wjg_A 86 PDLVVNIVDATA-------------LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI-DVDKLEKILG----VKVVP 147 (188)
T ss_dssp CSEEEEEEEGGG-------------HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHT----SCEEE
T ss_pred CCEEEEEecchh-------------HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchH-HHHHHHHHhC----CCeEE
Confidence 899999998652 11122222233332223 899999986554432 2222322222 36899
Q ss_pred EEccCCCCHHHHHHHHHhhc
Q psy17315 249 IVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~ 268 (561)
+|+++|.|+..+++++.+..
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHH
Confidence 99999999999999998874
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=125.98 Aligned_cols=152 Identities=17% Similarity=0.125 Sum_probs=93.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccC---CCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAEN---FPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~---~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.+|||||||+|+|++....... .+..+............+.++||||..... ......++.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 75 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhcccC
Confidence 478999999999999999999986632221 122222111111122368999999975322 1223345779
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|++++|+|++..+ .++.+..+...+.+.. .+ |+||+|+.+...... .....+.... ..
T Consensus 76 ~~~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~---~~~~~~~~~~-~~ 141 (172)
T 2erx_A 76 HAFILVYSITSRQ----------SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS---SEAEALARTW-KC 141 (172)
T ss_dssp SEEEEEEETTCHH----------HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH---HHHHHHHHHH-TC
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH---HHHHHHHHHh-CC
Confidence 9999999876322 2233333333333321 22 899999976544322 1222222221 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 142 AFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred eEEEecCCCCcCHHHHHHHHHHHH
Confidence 678999999999999999998863
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=126.11 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=97.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||..... ......++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 81 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-------SVTRSYYR 81 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTST
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHHh
Confidence 347999999999999999999998774444444444332221 1112 368999999964322 22345578
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+..... + |+||+|+....... ......+... ...
T Consensus 82 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~-~~~ 147 (186)
T 2bme_A 82 GAAGALLVYDITSRE----------TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT---FLEASRFAQE-NEL 147 (186)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHH-TTC
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---HHHHHHHHHH-cCC
Confidence 899999999876322 22233333333333221 1 89999997543332 1222222222 234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 148 ~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 148 MFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=126.13 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=93.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+..+.+.... ...+..+.++||||...... .....++.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 84 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI--VINNTRFLMWDIGGQESLRS-------SWNTYYTNT 84 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEE--EETTEEEEEEECCC----CG-------GGHHHHTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEE--EECCEEEEEEECCCCHhHHH-------HHHHHhcCC
Confidence 456899999999999999999999766 33333333322211 12345799999999854321 223446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhh--c--
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--V-- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~-- 241 (561)
|++++|+|++..+ .+..+......+... ..+ |+||+|+.+.. ....+...... .
T Consensus 85 d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~~ 149 (187)
T 1zj6_A 85 EFVIVVVDSTDRE----------RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-----TVAEISQFLKLTSIKD 149 (187)
T ss_dssp CEEEEEEETTCTT----------THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHHTGGGCCS
T ss_pred CEEEEEEeCCCHH----------HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-----CHHHHHHHhChhhhcC
Confidence 9999999886322 112222221222211 111 89999997421 22333332221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.....+.+|+++|.|+..++++|.+...
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 150 HQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred CCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 2336789999999999999999998753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=127.56 Aligned_cols=154 Identities=13% Similarity=0.098 Sum_probs=95.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++..... .+..|.+....... .....+.++||||..... ......+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~ 95 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYY 95 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHh
Confidence 345799999999999999999999876322 22223222211111 123468999999985432 1223446
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
+.+|++++|+|++... .+..+..+...+.... .+ |+||+|+....... ......+... ..
T Consensus 96 ~~~d~vi~v~D~~~~~----------s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~-~~ 161 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQ----------TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP---TEEARMFAEN-NG 161 (193)
T ss_dssp TTCCEEEEEEETTCHH----------HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHH-TT
T ss_pred ccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC---HHHHHHHHHH-cC
Confidence 8899999999876321 1222222223333221 11 89999998643322 2222333222 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 162 LLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998763
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=126.84 Aligned_cols=155 Identities=17% Similarity=0.094 Sum_probs=97.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccc----c---ccccccccc-
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEG----Q---GLGNAFLSH- 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~----~---~~~~~~l~~- 168 (561)
++|+++|.+|||||||+|+|++....++..|++|........ . .+.++||||+....... + .+...++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~-~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW-K-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE-T-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec-C-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999988777888998887654322 2 69999999975322110 0 111122332
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHH---------HHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLK---------LLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~---------~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
...++++++|+|+...+ .....+. .+...+.....+ |+||+|+.... ......
T Consensus 80 ~~~~~~v~~v~d~~s~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~~ 144 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAP---------EIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV------QEVINF 144 (190)
T ss_dssp GGGCCEEEEEEETTHHH---------HHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH------HHHHHH
T ss_pred hccCCEEEEEEcchhhh---------hHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH------HHHHHH
Confidence 55678888888764210 0000000 011122222223 89999997532 223333
Q ss_pred HhhhcCCC------cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 237 LLGRVGTN------LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~------~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+....... ..+.+|+++|.|+..+++++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 145 LAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 33333322 468999999999999999998764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=124.16 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=95.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++........|.++......... ...+.++||||...... .....++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 96 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPD 96 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHH-------HHHHhcCC
Confidence 457999999999999999999998764322233333322111112 23689999999643221 12335688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHh--cch---hhccccccCcCCC---------CCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDL--RRS---VDAKADSKKKMGP---------KKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~--~~~---v~NK~D~~~~~~~---------~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+..+ ..+...+... ..+ |+||+|+.+.... ..........
T Consensus 97 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 97 TDVILMCFSIDSPD----------SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 99999999875321 22222 2223333332 222 8999999754110 0111222233
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.........+.+|+++|.|+..++++|.+..
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 167 MANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33333444678999999999999999998764
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=126.39 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=94.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ..+.+.+|.+..... ..+..+.++||||..... ..+...++.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~--~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 84 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ--SQGFKLNVWDIGGQRKIR-------PYWRSYFENT 84 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEE--ETTEEEEEEECSSCGGGH-------HHHHHHHTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEE--ECCEEEEEEECCCCHHHH-------HHHHHHhCCC
Confidence 356899999999999999999999876 334445554432221 224579999999974322 2234456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
|++++|+|++..+ .+..+.. +.+.+... ..+ |+||+|+.+... ...+...... .
T Consensus 85 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~ 149 (181)
T 1fzq_A 85 DILIYVIDSADRK----------RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP-----ASEIAEGLNLHTIRD 149 (181)
T ss_dssp SEEEEEEETTCGG----------GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-----HHHHHHHTTGGGCCS
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC-----HHHHHHHhCchhccC
Confidence 9999999876322 1111111 11111111 111 899999975321 2223222221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..+++++.+..
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 150 RVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred CceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 233578999999999999999998764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-13 Score=125.64 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=94.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC-cc--cCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA-AA--ENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~-~~--~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...+|+++|.+|||||||+|+|++... .+ .+..|.+.... ......+.+|||||..... ......++.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 86 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF--EKGRVAFTVFDMGGAKKFR-------GLWETYYDN 86 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE--EETTEEEEEEEECCSGGGG-------GGGGGGCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE--EeCCEEEEEEECCCCHhHH-------HHHHHHHhc
Confidence 457999999999999999999998873 22 44444433321 2234579999999985432 222345689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHH--h--------cch---hhccccccCcCCCCCccHHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRD--L--------RRS---VDAKADSKKKMGPKKTDEGEKKML 237 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~--~--------~~~---v~NK~D~~~~~~~~~~~~~~l~~l 237 (561)
+|++++|+|++..+ .+..+.. +...+.. . ..+ |+||+|+..... ...+...
T Consensus 87 ~d~ii~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~~~~~ 151 (199)
T 4bas_A 87 IDAVIFVVDSSDHL----------RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-----AAELVEI 151 (199)
T ss_dssp CSEEEEEEETTCGG----------GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-----HHHHHHH
T ss_pred CCEEEEEEECCcHH----------HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-----HHHHHHH
Confidence 99999999886422 1222221 1111111 1 222 899999985421 2222222
Q ss_pred hh-----hcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 238 LG-----RVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 238 ~~-----~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.. .......+.+|+++|.|+..++++|.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 152 LDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 21 11344678999999999999999998864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=124.17 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=92.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+..|.+.... ...+..+.++||||...... .....++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 86 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL--SYKNLKLNVWDLGGQTSIRP-------YWRCYYADT 86 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEE--EETTEEEEEEEEC----CCT-------TGGGTTTTE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEE--EECCEEEEEEECCCCHhHHH-------HHHHHhccC
Confidence 456899999999999999999999766 33444444332211 12246789999999864332 233456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhhc-
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~- 241 (561)
|++++|+|++..+ .++.+...+.... .+ |+||+|+.+.. ....+.......
T Consensus 87 d~ii~v~d~~~~~-------------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~i~~~~~~~~ 148 (183)
T 1moz_A 87 AAVIFVVDSTDKD-------------RMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-----SASEVSKELNLVE 148 (183)
T ss_dssp EEEEEEEETTCTT-------------THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-----CHHHHHHHTTTTT
T ss_pred CEEEEEEECCCHH-------------HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-----CHHHHHHHhCccc
Confidence 9999999876321 1122222222221 11 89999997431 223333333221
Q ss_pred ---CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 ---GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ---~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+.++++++.+..
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 149 LKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp CCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 223579999999999999999998753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=124.72 Aligned_cols=153 Identities=17% Similarity=0.085 Sum_probs=95.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++.... ..+..+.+........ ....+.++||||..... ......++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 86 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------AVTRSYYR 86 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------HHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------hhHHHHhc
Confidence 3479999999999999999999987632 2222332222111111 12368999999964322 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .++.+..+...+...... |+||+|+.+..... ......+.... ..
T Consensus 87 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 152 (179)
T 1z0f_A 87 GAAGALMVYDITRRS----------TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT---YEEAKQFAEEN-GL 152 (179)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---HHHHHHHHHHT-TC
T ss_pred cCCEEEEEEeCcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---HHHHHHHHHHc-CC
Confidence 899999999876321 223333333333333211 89999997543332 22333333222 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 153 LFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=123.55 Aligned_cols=152 Identities=17% Similarity=0.105 Sum_probs=91.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--c--ccC------------------------------
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--N--KVP------------------------------ 140 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~--~~~------------------------------ 140 (561)
..++|+++|.+|||||||+|+|++........|.++.+.... . ...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 458999999999999999999998763322222221111110 0 000
Q ss_pred -------CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-c
Q psy17315 141 -------AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-R 212 (561)
Q Consensus 141 -------~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~ 212 (561)
..+.+|||||..... ......++.+|++++|+|++... .+..+..+...+.... .
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~----------s~~~~~~~~~~i~~~~~~ 148 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSN----------TLDRAKTWVNQLKISSNY 148 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCC
T ss_pred ccCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHhhCCC
Confidence 568999999964322 12334568899999999876321 1222222222333221 2
Q ss_pred h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 213 S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 213 ~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+ |+||+| ...... .......+.... ....+.+|+++|.|+..++++|.+..
T Consensus 149 piilv~NK~D-~~~~~~---~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 149 IIILVANKID-KNKFQV---DILEVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EEEEEEECTT-CC-CCS---CHHHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEECCC-cccccC---CHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 2 999999 322111 223333333322 34789999999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=125.65 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=93.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||...... .....++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 92 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-------ITRSYYR 92 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-------CCHHHHT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh-------hHHHHhc
Confidence 347999999999999999999998774333333333222211 1112 3689999999653321 2234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+.... ..
T Consensus 93 ~~d~ii~v~d~~~~~----------s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~~-~~ 158 (191)
T 2a5j_A 93 GAAGALLVYDITRRE----------TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK---REEGEAFAREH-GL 158 (191)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---HHHHHHHHHHH-TC
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccC---HHHHHHHHHHc-CC
Confidence 899999999876321 2233333333333321 11 89999997543332 22222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 159 IFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998763
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=127.96 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=74.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|.++.+.... ... ...+.++||||...... .....++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 79 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYR 79 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-------hHHHHHh
Confidence 347899999999999999999997764434445444433221 111 24689999999753321 1234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+..... .
T Consensus 80 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-~ 145 (183)
T 2fu5_C 80 GAMGIMLVYDITNEK----------SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS---KERGEKLALDYG-I 145 (183)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC---HHHHHHHHHHHT-C
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCC---HHHHHHHHHHcC-C
Confidence 899999999876321 2223332333333321 12 89999997543322 222233322222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 146 ~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 146 KFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp EEEECCC---CCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998763
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-13 Score=127.62 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=97.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|.++.+.... ...+ ..+.+|||||..... ......++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 91 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR-------TITTAYYR 91 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT-------CCCHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhc
Confidence 458999999999999999999998775445555555443322 1112 368999999965322 12344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .+..+..+...+.... .+ |+||+|+.++. . .......+..... .
T Consensus 92 ~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~---~~~~~~~~~~~~~-~ 156 (213)
T 3cph_A 92 GAMGIILVYDVTDER----------TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-V---TADQGEALAKELG-I 156 (213)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-S---CHHHHHHHHHHHT-C
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-c---CHHHHHHHHHHcC-C
Confidence 899999999876321 2233333333333322 12 89999994321 1 1222333322222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..++++|.+..
T Consensus 157 ~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 157 PFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp CEEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-13 Score=124.72 Aligned_cols=155 Identities=12% Similarity=0.077 Sum_probs=97.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc-c-----------CCCcccccCccc---cccCCeEEEEeCCCcccCCcccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA-E-----------NFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~-~-----------~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~ 159 (561)
..++|+++|.+|||||||+|.|.+..... . +..|.+...... ......+.++||||......
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH---
Confidence 34799999999999999999998765211 1 111111111110 01123689999999753321
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-----h---hhccccccCcCCCCCccH
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-----S---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~---v~NK~D~~~~~~~~~~~~ 231 (561)
.....++++|++++|+|++... .......++.+..++.+... + |+||+|+.+. ...
T Consensus 90 ----~~~~~~~~~d~~i~v~D~~~~~-------~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-----~~~ 153 (198)
T 3t1o_A 90 ----SRKLILRGVDGIVFVADSAPNR-------LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-----LPV 153 (198)
T ss_dssp ----HHHHHTTTCCEEEEEEECCGGG-------HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-----CCH
T ss_pred ----HHHHHHhcCCEEEEEEECCcch-------hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-----cCH
Confidence 2234568999999999876211 11122333444445554421 1 8999999753 233
Q ss_pred HHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 232 GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 232 ~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+...+.........+.+|+++|.|+..++++|.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 154 EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp HHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 4455555544444789999999999999999998763
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=142.50 Aligned_cols=156 Identities=25% Similarity=0.402 Sum_probs=112.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c--CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V--PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
....|+++|+||||||||+|+|++....++++|++|..++.+.. . ...+.++||||+........++...|+.++..
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 34579999999999999999999988778899999998876532 2 25689999999987655555566677778888
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhc--
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV-- 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~-- 241 (561)
+|.+++|+|.+ .....++.....++..+. .+ ++||+|.... ..+..+....
T Consensus 236 a~~lL~vvDls-----------~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--------~~~~~l~~~l~~ 296 (416)
T 1udx_A 236 TRVLLYVLDAA-----------DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--------EAVKALADALAR 296 (416)
T ss_dssp SSEEEEEEETT-----------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------HHHHHHHHHHHT
T ss_pred HHhhhEEeCCc-----------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--------HHHHHHHHHHHh
Confidence 99999999864 112333444444444332 12 8899999732 2233332222
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.....+.+|+.++.|+..|++++.+...
T Consensus 297 ~g~~vi~iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 297 EGLAVLPVSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp TTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCccCHHHHHHHHHHHHH
Confidence 1346899999999999999999988753
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.8e-13 Score=123.22 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=92.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+..+.+.... ......+.++||||...... .....++.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 90 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETL--QYKNISFEVWDLGGQTGVRP-------YWRCYFSDT 90 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEE--EETTEEEEEEEECCSSSSCC-------CCSSSSTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEE--EECCEEEEEEECCCCHhHHH-------HHHHHhhcC
Confidence 456899999999999999999998766 22222222221111 12345799999999854332 223456899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
|++++|+|++..+ .+..+. .+...+... ..+ |+||+|+.+.. ....+...... .
T Consensus 91 d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~ 155 (189)
T 2x77_A 91 DAVIYVVDSTDRD----------RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-----SEAEIAEQLGVSSIMN 155 (189)
T ss_dssp CEEEEEEETTCCT----------THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCS
T ss_pred CEEEEEEeCCCHH----------HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-----CHHHHHHHhChhhccC
Confidence 9999999886322 111111 111111111 112 89999997432 12233322221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..+++++.+..
T Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 156 RTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCccCHHHHHHHHHHHH
Confidence 223578999999999999999998864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=123.21 Aligned_cols=152 Identities=19% Similarity=0.151 Sum_probs=93.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...++|+++|.+|||||||+|+|++.......+ ..|.+.... ...+..+.++||||..... ......+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 90 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYR-------NLWEHYYKE 90 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSSCEEEEEEECCSTTTG-------GGGGGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHHhc
Confidence 345899999999999999999999876211111 122222111 1224579999999965332 223345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHH-HHHHHHh-----cch---hhccccccCcCCCCCccHHHHHHHhh--h
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLL-ETRIRDL-----RRS---VDAKADSKKKMGPKKTDEGEKKMLLG--R 240 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~-----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~--~ 240 (561)
+|++++|+|++..+ .+..+... ...+... ..+ |+||+|+.... ....+..... .
T Consensus 91 ~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~ 155 (190)
T 2h57_A 91 GQAIIFVIDSSDRL----------RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-----TSVKVSQLLCLEN 155 (190)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-----CHHHHHHHHTGGG
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-----CHHHHHHHhChhh
Confidence 99999999876321 12222222 2222221 122 89999997421 2233333322 1
Q ss_pred c--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 V--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
. .....+.+|+++|.|+..++++|.+..
T Consensus 156 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 156 IKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1 234678999999999999999998863
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=123.43 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=94.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++... ...++.++...... .... ..+.++||||...... .....++.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 77 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-------FPQTYSID 77 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-------CCGGGTTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-------HHHHHHhc
Confidence 47899999999999999999996652 22222222221111 1112 3578999999754321 12344678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .++.+..+...+.... .+ |+||+|+.+..... ......+.... ..
T Consensus 78 ~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 143 (181)
T 3t5g_A 78 INGYILVYSVTSIK----------SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS---YEEGKALAESW-NA 143 (181)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC---HHHHHHHHHHT-TC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec---HHHHHHHHHHh-CC
Confidence 99999999876322 2233333333332221 12 89999997543332 22333333322 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+++|.|+..+++++.+....
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 144 AFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp EEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987543
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-13 Score=123.40 Aligned_cols=151 Identities=13% Similarity=0.056 Sum_probs=93.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+..+.+.... ...+..+.++||||..... ......++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 86 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL--EHRGFKLNIWDVGGQKSLR-------SYWRNYFEST 86 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEE--EETTEEEEEEEECCSHHHH-------TTGGGGCTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEE--EECCEEEEEEECCCCHhHH-------HHHHHHhcCC
Confidence 356899999999999999999999876 22233333332211 1234579999999985322 1223456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
|++++|+|++..+ .+..+......+... ..+ |+||+|+.+.. ....+...... .
T Consensus 87 d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~ 151 (186)
T 1ksh_A 87 DGLIWVVDSADRQ----------RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-----SCNAIQEALELDSIRS 151 (186)
T ss_dssp SEEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCS
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC-----CHHHHHHHhChhhccC
Confidence 9999999876322 112222111122111 111 89999997532 22233332221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..+++++.+..
T Consensus 152 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 152 HHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 234679999999999999999998864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=127.03 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=95.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+..|.+....... .....+.+|||||..... ......++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 80 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR-------TITTAYYRG 80 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc-------chHHHhhcC
Confidence 478999999999999999999987632 223333333221111 112468999999975322 123455688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+..... ..
T Consensus 81 ~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-~~ 146 (203)
T 1zbd_A 81 AMGFILMYDITNEE----------SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS---SERGRQLADHLG-FE 146 (203)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC---HHHHHHHHHHHT-CE
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccC---HHHHHHHHHHCC-Ce
Confidence 99999999876321 2233333333343322 11 89999997543332 222333332222 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998763
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-13 Score=127.61 Aligned_cols=154 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||..... ......+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~ 95 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR-------SVTRSYY 95 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHS-------CCCHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH-------HHHHHHh
Confidence 3458999999999999999999998764433344444332221 1112 478999999964322 1233456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
+.+|++++|+|++... .++.+..+...+.... .+ |+||+|+........ .....+... ..
T Consensus 96 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~~-~~ 161 (200)
T 2o52_A 96 RGAAGALLVYDITSRE----------TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF---LEASRFAQE-NE 161 (200)
T ss_dssp TTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH---HHHHHHHHH-TT
T ss_pred ccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH---HHHHHHHHH-cC
Confidence 8899999999876322 2223333323333322 11 899999975433321 222222222 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 162 ~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 162 LMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=125.87 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=92.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...++|+++|.+|||||||+|+|++.... ..+..+.+.... ......+.++||||..... ......++.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 90 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI--TKGNVTIKLWDIGGQPRFR-------SMWERYCRG 90 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE--EETTEEEEEEEECCSHHHH-------TTHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE--EeCCEEEEEEECCCCHhHH-------HHHHHHHcc
Confidence 34589999999999999999999987632 223333332211 2234579999999975322 122344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh----
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR---- 240 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~---- 240 (561)
+|++++|+|++..+ .+..+. .+...+.. ...+ |+||+|+.+.. ....+......
T Consensus 91 ~d~ii~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~ 155 (188)
T 1zd9_A 91 VSAIVYMVDAADQE----------KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-----DEKELIEKMNLSAIQ 155 (188)
T ss_dssp CSEEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-----CHHHHHHHTTGGGCC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-----CHHHHHHHhChhhhc
Confidence 99999999876322 111121 11112211 1111 89999997532 12222222211
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
......+.+|+++|.|+..++++|.+..
T Consensus 156 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 156 DREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1233568999999999999999998864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=122.98 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=91.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||+|+|++..... .++.++...... .. ....+.++||||...... .....++.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~ 74 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-------MRDLYIKN 74 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-------HHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHhcc
Confidence 3689999999999999999999776221 122222111111 11 123488999999643221 12234678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+... .+..+..+...+.... .+ |+||+|+.+...... .....+.... ..
T Consensus 75 ~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~ 140 (167)
T 1kao_A 75 GQGFILVYSLVNQQ----------SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSS---SEGRALAEEW-GC 140 (167)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCH---HHHHHHHHHH-TS
T ss_pred CCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCH---HHHHHHHHHh-CC
Confidence 89999999876321 1222332333333322 12 899999975443322 2222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+++|.|+..+++++.+.
T Consensus 141 ~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 141 PFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCcCHHHHHHHHHHH
Confidence 68999999999999999999875
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=123.43 Aligned_cols=151 Identities=20% Similarity=0.157 Sum_probs=86.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|++........+..|.+.... . .....+.++||||...... .+.. ..++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~---~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG---WLQD---HCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----------C---HHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch---hhhh---hhhccC
Confidence 6899999999999999999987653322223333332221 1 1123688999999854321 1111 225678
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+...... .....+.... ...
T Consensus 77 d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 142 (169)
T 3q85_A 77 DAFLIVFSVTDRR----------SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL---EEGRHLAGTL-SCK 142 (169)
T ss_dssp SEEEEEEETTCHH----------HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH---HHHHHHHHHT-TCE
T ss_pred CEEEEEEECCChH----------HHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH---HHHHHHHHHc-CCc
Confidence 9999999876322 2333333333333321 12 899999985544322 2223332222 336
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..+++++.+.
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 143 HIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp EEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEecCccCCCHHHHHHHHHHH
Confidence 7999999999999999999875
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=122.09 Aligned_cols=151 Identities=16% Similarity=0.098 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+++++...... ... ...+.++||||..... ......++.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ 75 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRS 75 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHhhc
Confidence 478999999999999999999987632 2223332222111 111 2368999999964322 122334678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .+..+..+...+..... + |+||+|+.+..... ......+.... ..
T Consensus 76 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 141 (168)
T 1u8z_A 76 GEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---VEEAKNRADQW-NV 141 (168)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC---HHHHHHHHHHH-TC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC---HHHHHHHHHHc-CC
Confidence 99999999876322 12223323233333221 2 99999998654332 22222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 142 NYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998763
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.3e-13 Score=123.83 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=94.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCc---ccccc-----------CCeEEEEeCCCcccCCccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN---ENNKV-----------PAFLNVVDIAGLVKGAAEGQG 160 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~---~~~~~-----------~~~i~l~DtpG~~~~~~~~~~ 160 (561)
..++|+++|.+|||||||+|+|++........|..+.+.. ..... ...+.++||||.....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR----- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH-----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH-----
Confidence 3579999999999999999999986633222222221111 00001 2369999999974322
Q ss_pred cccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHH
Q psy17315 161 LGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGE 233 (561)
Q Consensus 161 ~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~ 233 (561)
......++.+|++++|+|++... .+..+..+...+.... .+ |+||+|+.+..... ...
T Consensus 85 --~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~ 149 (195)
T 3bc1_A 85 --SLTTAFFRDAMGFLLLFDLTNEQ----------SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK---EEE 149 (195)
T ss_dssp --HHHHHTTTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC---HHH
T ss_pred --HHHHHHHcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC---HHH
Confidence 22345678999999999876321 2222232333333322 12 89999997543332 222
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+..... ...+.+|+++|.|+..++++|.+..
T Consensus 150 ~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 ARELAEKYG-IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 333332222 3689999999999999999998763
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=123.12 Aligned_cols=149 Identities=13% Similarity=0.179 Sum_probs=93.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCcccccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+..+.+.. ..... ...+.+|||||... ...++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~ 71 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK--KEMLVDGQTHLVLIREEAGAPD------------AKFSG 71 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEE--EEEEETTEEEEEEEEECSSSCC------------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEE--EEEEECCEEEEEEEEECCCCch------------hHHHH
Confidence 347999999999999999999998763 22222221111 10111 23588999999643 13457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc------h---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR------S---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
++|++++|+|.+.++ .+..+..+.+++..... + |+||+|+....... ........+....
T Consensus 72 ~~d~~ilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~-v~~~~~~~~~~~~ 140 (178)
T 2iwr_A 72 WADAVIFVFSLEDEN----------SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV-VGDARARALXADM 140 (178)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCC-SCHHHHHHHHHHH
T ss_pred hCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCc-CCHHHHHHHHHhh
Confidence 899999999876322 23334443334444322 2 89999995322111 1223333333333
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..+++++.+..
T Consensus 141 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 141 KRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp SSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 445789999999999999999998763
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.9e-13 Score=122.63 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=93.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++........|.++.........+ ..+.++||||...... .....++.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 89 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------MREQYMRT 89 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------SHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-------HHHHHHhc
Confidence 4579999999999999999999976532222222221111111112 2467799999643221 12334678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .++.+..+...+.... .+ |+||+|+.+..... ......+..... .
T Consensus 90 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-~ 155 (183)
T 3kkq_A 90 GDGFLIVYSVTDKA----------SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT---RDQGKEMATKYN-I 155 (183)
T ss_dssp CSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSC---HHHHHHHHHHHT-C
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcC---HHHHHHHHHHhC-C
Confidence 99999999876322 2233333333332211 11 89999997643332 223333333333 5
Q ss_pred cEEEEEcc-CCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGV-PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~-~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|++ +|.|++.+++++.+..
T Consensus 156 ~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 156 PYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHH
Confidence 68999999 9999999999998753
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=126.34 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=94.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.+|||||..... ......++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~ 100 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYYR 100 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHHT
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHHh
Confidence 357999999999999999999998763322223222222111 1112 378999999974322 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+.... .+ |+||+|+....... ......+.......
T Consensus 101 ~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~---~~~~~~~~~~~~~~ 167 (201)
T 2hup_A 101 SANGAILAYDITKRS----------SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS---LAEAQSLAEHYDIL 167 (201)
T ss_dssp TCSEEEEEEETTBHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---HHHHHHHHHHTTCS
T ss_pred hCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC---HHHHHHHHHHcCCC
Confidence 899999999876322 2233333333333322 11 89999998543322 23333443333333
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=123.93 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++... ...+++++.+.... .... ..+.++||||...... + ....+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~ 89 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----L---RPLCY 89 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS----S---GGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH----H---hHhhc
Confidence 4568999999999999999999998762 23344444332221 1112 2577999999854332 1 22346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCC---------CCCccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMG---------PKKTDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~---------~~~~~~~~l 234 (561)
+++|++++|+|++..+ .+..+. .+...+.... .+ |+||+|+..... .........
T Consensus 90 ~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPS----------SFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred CCCcEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 8899999999876322 122221 2222333321 12 899999975310 011122333
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.........+.+|+++|.|+..+++++.+..
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 3444444444789999999999999999998764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-13 Score=123.02 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=90.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|++++.... ..+++++.+.... . .....+.++||||...... .....++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 78 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-------LRPLSYR 78 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTT-------TGGGGGT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-------hHHhhcc
Confidence 4579999999999999999999976622 2223333221111 1 1223577999999753321 2234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCC-------CCccHHHHHHH
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGP-------KKTDEGEKKML 237 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~-------~~~~~~~l~~l 237 (561)
.+|++++|+|++..+ .+..+. .+...+... ..+ |+||+|+.+.... ..........+
T Consensus 79 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 79 GADVFILAFSLISKA----------SYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 899999999876322 122222 223333332 122 8999999754221 00122233333
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.........+.+|+++|.|+..+++++.+..
T Consensus 149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 149 KKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333444679999999999999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=123.00 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=92.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.+|||||||+|+|++........|.++......... ...+.++||||...... .....++.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 97 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDT 97 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-------TGGGGCTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhcCCC
Confidence 46899999999999999999998763322222222211111111 23689999999753321 223456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHh--cch---hhccccccCcCCC---------CCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDL--RRS---VDAKADSKKKMGP---------KKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~--~~~---v~NK~D~~~~~~~---------~~~~~~~l~~l 237 (561)
|++++|+|.+..+ .+..+ ..+...+... ..+ |+||+|+...... ..........+
T Consensus 98 d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 98 DVILMCFSVDSPD----------SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp CEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 9999999875321 22222 2222333332 122 8999999754110 00111122222
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.........+.+|+++|.|+..++++|.+...
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 168 AVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22333346789999999999999999988753
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=126.61 Aligned_cols=153 Identities=17% Similarity=0.115 Sum_probs=94.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++...... ++.++...... ......+.++||||...... .....++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 94 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEG-YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-------LPYSFII 94 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-------CCGGGTT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCC-CCCccceEEEEEEEECCEEEEEEEEECCCccchHH-------HHHHHHh
Confidence 458999999999999999999998773322 22222111111 11234689999999653321 2344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+... ..+ |+||+|+.+....... ....+.... .
T Consensus 95 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~---~~~~~~~~~-~ 160 (201)
T 3oes_A 95 GVHGYVLVYSVTSLH----------SFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV---EGKKLAESW-G 160 (201)
T ss_dssp TCCEEEEEEETTCHH----------HHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH---HHHHHHHHH-T
T ss_pred cCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH---HHHHHHHHh-C
Confidence 899999999876321 222333333333222 112 8999999865443322 222222222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
...+.+|+++|.|+..++++|.+...
T Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 161 ATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999988753
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.4e-13 Score=123.06 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=92.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++... ...+++++.+.... ... ...+.++||||...... .....++.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 75 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRT 75 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHHHHhc
Confidence 47899999999999999999997762 23344444332221 111 22477899999653321 12234577
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+.. ..+..+..+...+.... .+ |+||+|+.+... .......+..... .
T Consensus 76 ~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----~~~~~~~~~~~~~-~ 140 (189)
T 4dsu_A 76 GEGFLCVFAINNT----------KSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV----DTKQAQDLARSYG-I 140 (189)
T ss_dssp CSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS----CHHHHHHHHHHHT-C
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc----CHHHHHHHHHHcC-C
Confidence 9999999987532 12233333333333322 11 899999974321 2223333333322 4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+.+|.|++.++++|.+..
T Consensus 141 ~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 141 PFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998863
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=121.13 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=94.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+++++...... ... ...+.++||||...... + ....++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----~---~~~~~~ 79 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----M---REQYMR 79 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----C---HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHh
Confidence 457999999999999999999998752 22334444332211 111 23688999999753321 1 223457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHH-HHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRI-RDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+ ..... + |+||+|+.+...... .....+... ..
T Consensus 80 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~~-~~ 145 (181)
T 2fn4_A 80 AGHGFLLVFAINDRQ----------SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR---SEASAFGAS-HH 145 (181)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH---HHHHHHHHH-TT
T ss_pred hCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH---HHHHHHHHH-cC
Confidence 889999999876321 122232222222 22211 1 899999986544322 222222222 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 146 ~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 146 VAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-13 Score=128.43 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=96.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++.... ..+..+++....... .....+.++||||..... ......++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR-------TITTAYYR 94 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH-------HHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHHc
Confidence 4579999999999999999999986622 222333333222211 123469999999954222 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|.+.. ..++.+..+...+..... + |+||+|+.+...... .....+.... ..
T Consensus 95 ~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~ 160 (191)
T 3dz8_A 95 GAMGFILMYDITNE----------ESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT---EKGQLLAEQL-GF 160 (191)
T ss_dssp TCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---HHHHHHHHHH-TC
T ss_pred cCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH---HHHHHHHHHc-CC
Confidence 89999999987632 223344444444444321 1 899999975543322 2222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 161 DFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=119.40 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=90.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
++|+++|.+|||||||+|+|++.... ...| |.+.... ......+.++||||..... ......++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 70 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 70 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHTTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChhhH-------HHHHHHhccCCE
Confidence 47999999999999999999876621 1223 2222111 1234579999999985322 122345689999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHH-HHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh--c--CC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--V--GT 243 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~--~~ 243 (561)
+++|+|++..+ .+..+.. +...+... ..+ |+||+|+.+.. ....+...... . ..
T Consensus 71 ~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 71 LIFVVDSNDRE----------RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRHRN 135 (164)
T ss_dssp EEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCSSCC
T ss_pred EEEEEECCCHH----------HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-----CHHHHHHHhCcccccCcc
Confidence 99999876322 1122221 11111111 111 89999997432 12223222221 1 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+.+|+++|.|+..+++++.+..
T Consensus 136 ~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 136 WYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred EEEEEcccCCCcCHHHHHHHHHHHH
Confidence 3578999999999999999998764
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=130.79 Aligned_cols=157 Identities=16% Similarity=0.028 Sum_probs=95.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccccC---CeEEEEeCCCcccCCccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
...++|+++|.+|||||||+|+|++... ...+..+.+.......... ..+.++||||...... .....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~ 81 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV-------LKDVY 81 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC-------CCHHH
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch-------HHHHH
Confidence 3458999999999999999999997662 2233344333222211111 3589999999753321 12234
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
++.+|++++|+|++... .+..+..+...+.... .+ |+||+|+.+..... ......+.. ..
T Consensus 82 ~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~-~~ 147 (218)
T 4djt_A 82 YIGASGAILFFDVTSRI----------TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS---KKLVMEVLK-GK 147 (218)
T ss_dssp HTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC---HHHHHHHTT-TC
T ss_pred hhcCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC---HHHHHHHHH-Hc
Confidence 67899999999876322 2223332323333221 12 89999997543322 122222222 23
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
....+.+|+++|.|+..++++|.+.....
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 34689999999999999999999876443
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=126.24 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=93.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.+|||||..... ......++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 84 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR-------AITSAYYR 84 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT-------CCCGGGTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh-------hhHHHHhc
Confidence 347999999999999999999998774333334333332221 1122 368999999965332 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|.+... .+..+..+...+.... .+ |+||+|+.+..... ......+... ...
T Consensus 85 ~~d~vilV~D~~~~~----------s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~-~~~ 150 (223)
T 3cpj_B 85 GAVGALIVYDISKSS----------SYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP---TEESKTFAQE-NQL 150 (223)
T ss_dssp TCCEEEEEEC-CCHH----------HHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC---HHHHHHHHHH-TTC
T ss_pred cCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC---HHHHHHHHHH-cCC
Confidence 899999999876321 2223333333333321 11 89999998643332 2222233222 234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.+|+++|.|+..++++|.+...
T Consensus 151 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 151 LFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp EEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999988753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=120.64 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=93.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+..++.+.... . .....+.++||||...... .....++.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 76 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSYPQ 76 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHhccC
Confidence 478999999999999999999976522 1222222221110 1 1123577999999854321 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCC---------CCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGP---------KKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~---------~~~~~~~l~~ 236 (561)
+|++++|+|++... .+..+. .+...+... ..+ |+||+|+.+.... ..........
T Consensus 77 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 77 TDVSLICFSLVSPA----------SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred CcEEEEEEECCChh----------hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 99999999876321 122222 222333332 222 8999999753210 0111222223
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.........+.+|+++|.|+..+++++.+..+
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 333333347899999999999999999998754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-14 Score=133.44 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=91.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-ccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|++|.+..... ..+ ..+.++||||..... ......++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 104 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYR 104 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC-------CCSCC--C
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHhh
Confidence 3579999999999999999999987654444455554443221 112 368999999964322 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+..... + |+||+|+.+...........+..... .
T Consensus 105 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~----~ 170 (199)
T 3l0i_B 105 GAHGIIVVYDVTDQE----------SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG----I 170 (199)
T ss_dssp CCSEEEECC-CCCSH----------HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT----C
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC----C
Confidence 899999999876322 22233333333333211 1 89999998665444333333332222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..++++|.+..
T Consensus 171 ~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 171 PFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CBCCCCC---HHHHHHHHHHTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998764
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=145.80 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=100.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCC-eEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPA-FLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~-~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|+|||||+|+|++.. ..+++.+|+|.++..... .+. .+.+|||||+......+..........++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 45789999999999999999999988 567889999998765421 222 79999999998654333333334456678
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
.+|++++|+|+... .....+..++.+...+ |+||+|+...... .....+.... ....+
T Consensus 113 ~aD~vllVvD~~~~-------------~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-----~~~~~l~~~~-g~~v~ 173 (423)
T 3qq5_A 113 RADCGILVTDSAPT-------------PYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-----ELKGLYESRY-EAKVL 173 (423)
T ss_dssp SCSEEEEECSSSCC-------------HHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-----HHHHHSSCCT-TCCCC
T ss_pred cCCEEEEEEeCCCh-------------HHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-----HHHHHHHHHc-CCCEE
Confidence 99999999986311 1112233344444434 8999999854332 2223332222 34678
Q ss_pred EEEccCCCCHHHHHHHHHhhccCC
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
.+|+++|.|+..++++|.+.....
T Consensus 174 ~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 174 LVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEECCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999987444
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-13 Score=125.21 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=93.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ... ...+.++||||...... ......++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~~ 92 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYYR 92 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHhc
Confidence 457999999999999999999998763333333333222111 111 23689999999643210 12233468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|++... .+..+..+...+.... .+ |+||+|+....... ......+.... .
T Consensus 93 ~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~~-~ 158 (189)
T 1z06_A 93 NVHAVVFVYDMTNMA----------SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP---TDLAQKFADTH-S 158 (189)
T ss_dssp TCCEEEEEEETTCHH----------HHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC---HHHHHHHHHHT-T
T ss_pred CCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC---HHHHHHHHHHc-C
Confidence 899999999876321 2223333333333332 11 89999997554332 22222332222 2
Q ss_pred CcEEEEEccCC---CCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPN---VGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~---~Gks~l~~~l~~~~ 268 (561)
...+.+|+++| .|+..++++|.+..
T Consensus 159 ~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 159 MPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 46899999999 99999999998763
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-12 Score=119.71 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=95.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..++.++.+.... ... ...+.+|||||...... .....++.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~ 89 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPM 89 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-------TGGGGCTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-------HHHHhcCC
Confidence 479999999999999999999987522 2333333222211 111 13688999999754331 12344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCC---------CCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGP---------KKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~---------~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+..+. .+...+... ..+ |+||+|+...... ..........
T Consensus 90 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 90 TDVFLICFSVVNPA----------SFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 99999999876322 122222 222333332 122 8999999753200 0112233333
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.........+.+|+++|.|+..+++++.+..
T Consensus 160 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33333444789999999999999999998764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=123.89 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=94.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--ccc--CCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKV--PAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++.... ..+++++.+.... ... ...+.++||||..... ......+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~ 99 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSY 99 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHh
Confidence 45689999999999999999999976522 2233333322211 111 2246699999984322 1233457
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCC---------CCCccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMG---------PKKTDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~---------~~~~~~~~l 234 (561)
+.+|++++|+|++... .+..+. .+...+... ..+ |+||+|+..... .........
T Consensus 100 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPA----------SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred ccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHH
Confidence 8999999999876322 222222 233333333 122 899999975421 001112223
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.......+.+.+|+++|.|+..+++++.+.
T Consensus 170 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 333334444568999999999999999999875
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-13 Score=125.91 Aligned_cols=156 Identities=18% Similarity=0.097 Sum_probs=91.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+.+|++........ ....+.++||||..... ......++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~ 99 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR-------SIAKSYFR 99 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH-------HHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh-------hhHHHHHh
Confidence 458999999999999999999998762 33344444433222111 12358999999964322 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcC---CCCCccHHHHHHHhhhc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKM---GPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~---~~~~~~~~~l~~l~~~~ 241 (561)
.+|++++|+|++... .+..+..+.+.+.... .+ |+||+|+.... ............+....
T Consensus 100 ~~d~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 100 KADGVLLLYDVTCEK----------SFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp HCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred hCCEEEEEEECCChH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 899999999876322 1222332223333321 12 89999997321 11111122222222222
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..++++|.+..
T Consensus 170 -~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 170 -GALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 23678999999999999999998864
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=122.17 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=93.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcc-ccc---cCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-NNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~-~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|++++........| |..... ... ....+.+|||||..... .+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------~~ 83 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ------------FA 83 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSCCHH------------HH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEEEEEEEEECCCChhhh------------ee
Confidence 3458999999999999999999998763221112 111100 011 12357889999974211 45
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+.+|++++|+|.+.. ..+..+..+...+..... + |+||+|+....... ........+.....
T Consensus 84 ~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDE----------ISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRV-IDDSRARKLSTDLK 152 (184)
T ss_dssp HHCSEEEEEEETTCH----------HHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCC-SCHHHHHHHHHHTT
T ss_pred cCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccc-cCHHHHHHHHHHcC
Confidence 789999999987632 123333333333433321 1 89999996322221 12333444444444
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..+++++.+..
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999998763
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=123.28 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
...++|+++|.+|||||||+|+|++........|..+........ ....+.++||||... . ......++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~-------~~~~~~~~ 97 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-T-------IQREGHMR 97 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C-------HHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c-------cchhhhhc
Confidence 345899999999999999999999876322111111111111011 124589999999864 1 12234467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+.... .
T Consensus 98 ~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~---~~~~~~~~~~~-~ 163 (196)
T 2atv_A 98 WGEGFVLVYDITDRG----------SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS---TEEGEKLATEL-A 163 (196)
T ss_dssp HCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSC---HHHHHHHHHHH-T
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccC---HHHHHHHHHHh-C
Confidence 899999999876322 2233333333333321 11 89999998653332 22222222222 3
Q ss_pred CcEEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
...+.+|+++|. |+..++++|.+..
T Consensus 164 ~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 CAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 467899999999 9999999998764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=121.99 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=94.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+++++...... .... ..+.++||||..... ......++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 88 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFR 88 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHHHHhc
Confidence 347999999999999999999998762 22333333322211 1112 368999999964322 12234467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+..... + |+||+|+.+..... ......+.... .
T Consensus 89 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~ 154 (187)
T 2a9k_A 89 SGEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---VEEAKNRAEQW-N 154 (187)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC---HHHHHHHHHHT-T
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC---HHHHHHHHHHc-C
Confidence 899999999876322 12222222233333221 2 89999997643322 22333333222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 155 VNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998763
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=122.54 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=92.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCC--ccc-ccCccccccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFP--FCT-IDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~--~~T-~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
...++|+++|.+|||||||+|+|++........| +.+ ............+.++||||..... ......++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 78 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSIS 78 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhc
Confidence 3458999999999999999999998663211111 111 1111101122368999999965322 11223457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
.+|++++|+|.+..+ .+..+..+.+.+.... .+ |+||+|+.++.. .......+....
T Consensus 79 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~- 143 (199)
T 2gf0_A 79 KGHAFILVFSVTSKQ----------SLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV----DTREAQAVAQEW- 143 (199)
T ss_dssp HCSEEEEEEETTCHH----------HHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS----CHHHHHHHHHHH-
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc----CHHHHHHHHHHh-
Confidence 889999999876321 2233333333333322 12 899999975221 122222222222
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..++++|.+..
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 144 KCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 23678999999999999999999874
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-12 Score=119.11 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=90.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+++++...... ... ...+.+|||||...... .....++.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 92 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRT 92 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTT
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHhhCc
Confidence 479999999999999999999977622 2233333222111 111 23488999999753221 12344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+... .+..+..+...+..... + |+||+|+..+. ........+..... .
T Consensus 93 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~~~~~~~~~~-~ 157 (190)
T 3con_A 93 GEGFLCVFAINNSK----------SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT----VDTKQAHELAKSYG-I 157 (190)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC----SCHHHHHHHHHHHT-C
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc----CCHHHHHHHHHHcC-C
Confidence 99999999875321 22333333333433321 2 89999997521 12233333333322 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 158 ~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 158 PFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.5e-13 Score=124.66 Aligned_cols=154 Identities=20% Similarity=0.174 Sum_probs=96.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|++|.+..... .. ...+.+|||||...... .+.. ..++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~~~---~~~~ 95 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG---WLRD---HCLQ 95 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH---HHHH---HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh---hhHH---Hhhc
Confidence 4579999999999999999999876543344555555433221 11 23578899999853211 1111 2357
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+..... ......+.... .
T Consensus 96 ~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~a~~~-~ 161 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRR----------SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS---LEEGRHLAGTL-S 161 (195)
T ss_dssp HCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC---HHHHHHHHHHT-T
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC---HHHHHHHHHHh-C
Confidence 899999999876322 2233333333333321 12 89999997543332 22222222222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..+++++.+..
T Consensus 162 ~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998874
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-12 Score=115.54 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=91.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|+|.+..... .++.++...... .. ....+.++||||...... .....++.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH-------HHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH-------HHHHhhccC
Confidence 689999999999999999999776221 222222211111 11 123578999999653221 122345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.. ..+..+..+...+.... .+ ++||+|+.++. ........+..... .+
T Consensus 76 ~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~-~~ 140 (166)
T 2ce2_X 76 EGFLCVFAINNT----------KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART----VESRQAQDLARSYG-IP 140 (166)
T ss_dssp SEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC----SCHHHHHHHHHHHT-CC
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc----cCHHHHHHHHHHcC-Ce
Confidence 999999987531 12223333333333332 22 89999998632 12233333333322 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+.+|.|+..+++++.+..
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 141 YIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998763
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=121.69 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=88.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...++|+++|.+|||||||+|+|++.... ...| |.+.... ......+.++||||...... .....++.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 96 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNICFTVWDVGGQDKIRP-------LWRHYFQN 96 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----CT-------THHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCC--cCceeEEEEEECCEEEEEEECCCCHhHHH-------HHHHHhcc
Confidence 45689999999999999999999876622 1122 2221111 12345799999999853221 22334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-h---cch---hhccccccCcCCCCCccHHHHHHHhhhc---
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-L---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV--- 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~--- 241 (561)
+|++++|+|++..+ .+..+......+.. . ..+ |+||+|+.+.. ....+.......
T Consensus 97 ~d~iilv~D~~~~~----------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~ 161 (192)
T 2b6h_A 97 TQGLIFVVDSNDRE----------RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM-----PVSELTDKLGLQHLR 161 (192)
T ss_dssp CCEEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCS
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC-----CHHHHHHHhCccccc
Confidence 99999999876322 11222111111111 1 111 89999997431 122333322211
Q ss_pred -CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 -GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 -~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..++++|.+..
T Consensus 162 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 162 SRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp SCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 223578999999999999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=122.69 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=95.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+++++...... ...+ ..+.+|||||..... ......++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 84 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFR 84 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHHHHHHh
Confidence 457999999999999999999998762 22333333332211 1112 268999999964322 12233457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+..... + |+||+|+....... ......+.....
T Consensus 85 ~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 150 (206)
T 2bov_A 85 SGEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---VEEAKNRAEQWN- 150 (206)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC---HHHHHHHHHHHT-
T ss_pred hCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc---HHHHHHHHHHhC-
Confidence 899999999876321 22233333333333221 2 89999997654332 222333322222
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 151 ~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 151 VNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=121.17 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=94.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+..+++....... .....+.++||||..... ......++.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 87 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR-------TLTPSYYRG 87 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC-------CSHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHHHhcc
Confidence 478999999999999999999987633 233333333221111 122468999999964322 123345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|++... .+..+..+...+.... .+ |+||+|+.++. . .......+... ...
T Consensus 88 ~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~---~~~~~~~~~~~-~~~ 152 (195)
T 1x3s_A 88 AQGVILVYDVTRRD----------TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-V---DRNEGLKFARK-HSM 152 (195)
T ss_dssp CCEEEEEEETTCHH----------HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-S---CHHHHHHHHHH-TTC
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-c---CHHHHHHHHHH-cCC
Confidence 99999999876321 2223332323333321 11 89999995321 1 12222222222 234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+++|.|+..++++|.+....
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 153 LFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999987543
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=122.56 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=96.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCccc-cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++..... .+..+.+...... ......+.+|||||...... .....++.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 98 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-------VRPLCYSD 98 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-------TGGGGCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHHcCC
Confidence 45899999999999999999999876322 2222222111000 11123688999999753321 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhh-HHHHHHHHHHhcch-----hhccccccCcC---------CCCCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRN-LKLLETRIRDLRRS-----VDAKADSKKKM---------GPKKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~-----v~NK~D~~~~~---------~~~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+.. +..+...+...... |+||+|+.+.. ............
T Consensus 99 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 99 SDAVLLCFDISRPE----------TVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp CSEEEEEEETTCTH----------HHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred CeEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 99999999876322 2222 33344444443222 89999997531 001112233333
Q ss_pred HhhhcCCCcEEEEEccCCCC-HHHHHHHHHhhcc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVG-KSTFFNVLTKRAF 269 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~G-ks~l~~~l~~~~~ 269 (561)
+.........+.+|+++|.| +..+++++.+...
T Consensus 169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 33343444679999999998 9999999988753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-13 Score=128.28 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=94.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--ccc------------CCeEEEEeCCCcccCCcccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKV------------PAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~------------~~~i~l~DtpG~~~~~~~~~ 159 (561)
...++|+++|.+|||||||+|+|++........|..+.+.... ... ...+.+|||||.....
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---- 98 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR---- 98 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH----
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH----
Confidence 3457999999999999999999998764322223222221111 011 3469999999964221
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-------h---hhccccccCcCCCCCc
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-------S---VDAKADSKKKMGPKKT 229 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~---v~NK~D~~~~~~~~~~ 229 (561)
......++.+|++++|+|++... .++.+..++..+.. + |+||+|+.......
T Consensus 99 ---~~~~~~~~~~d~iilV~D~~~~~-------------s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~-- 160 (217)
T 2f7s_A 99 ---SLTTAFFRDAMGFLLMFDLTSQQ-------------SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN-- 160 (217)
T ss_dssp ---HHHHHHHTTCCEEEEEEETTCHH-------------HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC--
T ss_pred ---hHHHHHhcCCCEEEEEEECcCHH-------------HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC--
Confidence 22344568899999999876321 12222333333321 1 89999997543332
Q ss_pred cHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 230 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 230 ~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
......+.... ....+.+|+++|.|+..++++|.+..
T Consensus 161 -~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 161 -ERQARELADKY-GIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -HHHHHHHHHHT-TCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHC-CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 22233333222 24689999999999999999998764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=122.46 Aligned_cols=156 Identities=14% Similarity=0.131 Sum_probs=84.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++..... .+..++...... .. ....+.+|||||...... .....++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~ 104 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE-SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-------LRPLFYP 104 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH-------HHHHHhc
Confidence 45799999999999999999999766321 222222211111 11 123689999999753321 1123467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCCC---------CCccHHHHH
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMGP---------KKTDEGEKK 235 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~~---------~~~~~~~l~ 235 (561)
.+|++++|+|.+..+ .+..+. .+...+..... + |+||+|+...... .........
T Consensus 105 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 174 (214)
T 2j1l_A 105 DASVLLLCFDVTSPN----------SFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQ 174 (214)
T ss_dssp CEEEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHH
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHH
Confidence 899999999876322 122221 22223333211 2 8999999854210 011122233
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.........+.+|+++|.|+..+++++.+..
T Consensus 175 ~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 175 EMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 333333444789999999999999999998864
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-13 Score=126.89 Aligned_cols=157 Identities=16% Similarity=0.063 Sum_probs=101.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh-cCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT-KSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~-~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|++. +.. ....+.+|+|........ ....+.++||||...... .....+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~ 85 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-------LRDGYY 85 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC-------CCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH-------HHHHHH
Confidence 345899999999999999999954 433 455677787776544321 234689999999643221 223346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc--h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR--S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+.+|++++|+|++.. ..+..+..+...+..... + |+||+|+.+..... ....+.... ..
T Consensus 86 ~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~----~~ 149 (221)
T 3gj0_A 86 IQAQCAIIMFDVTSR----------VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKK----NL 149 (221)
T ss_dssp TTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG--GGCCHHHHH----TC
T ss_pred hcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH--HHHHHHHHc----CC
Confidence 789999999987632 123333333333333221 2 89999997544321 111111111 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~ 273 (561)
..+.+|+++|.|+..++++|.+.......
T Consensus 150 ~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 150 QYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp EEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 67899999999999999999988655443
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=122.59 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=96.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++.... ..++.++.+.... ... ...+.+|||||...... .....++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 79 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------LRPLSYR 79 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhcc
Confidence 4479999999999999999999976632 2233333222211 111 23689999999854332 1223568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCC-----CCccHHHHHHHhh
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGP-----KKTDEGEKKMLLG 239 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~-----~~~~~~~l~~l~~ 239 (561)
.+|++++|+|.+..+ .+..+. .+...+... ..+ |+||+|+.+.... ..........+..
T Consensus 80 ~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 80 GADIFVLAFSLISKA----------SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 899999999876322 122221 222333332 122 8999999753211 0012233334434
Q ss_pred hcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 240 RVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 240 ~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.......+.+|+++|.|+..+++++.+...
T Consensus 150 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 150 QIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 444457899999999999999999998754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-12 Score=117.93 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=93.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCccc-cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++..... .+..+.+...... ......+.+|||||...... + ....++.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~ 78 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPD 78 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT----T---GGGGCTT
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh----h---HHhhcCC
Confidence 45789999999999999999999876321 2222211110000 11123689999999753321 1 2234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcc--h---hhccccccCcCC---------CCCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRR--S---VDAKADSKKKMG---------PKKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~--~---v~NK~D~~~~~~---------~~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+..+ ..+...+..... + |+||+|+.+... ...........
T Consensus 79 ~~~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 79 SDAVLICFDISRPE----------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred CcEEEEEEECCCHH----------HHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 99999999876322 12222 222233333221 2 899999974210 01112223333
Q ss_pred HhhhcCCCcEEEEEcc-CCCCHHHHHHHHHhhc
Q psy17315 237 LLGRVGTNLKVGIVGV-PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~~~i~isg~-~~~Gks~l~~~l~~~~ 268 (561)
+.........+.+|++ +|.|+..+++.+.+..
T Consensus 149 ~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 149 MAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 3333344578999999 6899999999998763
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.35 E-value=9.8e-13 Score=130.30 Aligned_cols=161 Identities=11% Similarity=0.068 Sum_probs=97.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-ccccCccc--cccCCeEEEEeCCCcccCCcccccc----ccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-CTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGL----GNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~----~~~~l 166 (561)
..++|+++|.||||||||+|+|++.. ..++..|+ +|+..... ...+..+.+|||||+.........+ ...+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999887 44444555 67665433 2335679999999998654321111 22223
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-----cch---hhc-cccccCcCCCCC----ccHHH
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-----RRS---VDA-KADSKKKMGPKK----TDEGE 233 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~---v~N-K~D~~~~~~~~~----~~~~~ 233 (561)
..++.+|++++|+|++. +......+...+... ..+ +.| |+|+.+. .... .....
T Consensus 101 ~~~~~~d~il~V~d~~~------------~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~ 167 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGR------------YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKA 167 (260)
T ss_dssp HHTTCCSEEEEEEETTC------------CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHH
T ss_pred hcCCCCcEEEEEEeCCC------------CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHH
Confidence 46788999999998752 000111122223332 222 555 9999732 1100 00011
Q ss_pred HHHHhhhcCC----CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 234 KKMLLGRVGT----NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 234 l~~l~~~~~~----~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+..+...... ...+.+|+.+|.|+..+++.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 168 LSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 2223322221 1117889999999999999998764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=122.72 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=93.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|-+|||||||+++++.........|....+.... ......+.+|||+|...... + ....++.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~----l---~~~~~~~ 85 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS----L---IPSYIRD 85 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG----G---HHHHHTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh----H---HHHHhcc
Confidence 47999999999999999999987653222222222221111 11123688999999754332 1 2234689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.+ ..++.+..+...+...... |+||+|+.+...........+..-.+ ..
T Consensus 86 a~~~ilv~di~~~----------~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~----~~ 151 (216)
T 4dkx_A 86 SAAAVVVYDITNV----------NSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN----VM 151 (216)
T ss_dssp CSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CE
T ss_pred ccEEEEEeecchh----------HHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC----Ce
Confidence 9999999987532 2344444443334332221 89999998655443322222322222 24
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+||++|.|+..+|..|++...
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHH
Confidence 688999999999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=120.18 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=91.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++.... ..++.++...... . .....+.+|||||...... + ...+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~----~~~~ 89 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----C----ERYL 89 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----T----HHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----H----HHHH
Confidence 34589999999999999999999987622 2222232221111 1 1223688999999754331 1 2356
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh------cch---hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL------RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
+.+|++++|+|.+..+ .++.+..+...+... ..+ |+||+|+........ .....+...
T Consensus 90 ~~~~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~~ 156 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQ----------SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK---AEGVALAGR 156 (187)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCH---HHHHHHHHH
T ss_pred hhCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCH---HHHHHHHHH
Confidence 8899999999876321 223333333333322 112 899999975443322 222222222
Q ss_pred cCCCcEEEEEc-cCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVG-VPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg-~~~~Gks~l~~~l~~~~ 268 (561)
.. ...+.+|+ ++|.|+..+++.+.+..
T Consensus 157 ~~-~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 157 FG-CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HT-CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred cC-CcEEEEeecCccccHHHHHHHHHHHH
Confidence 22 36789999 89999999999998763
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=126.21 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=87.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCC--cccccCcccc--ccCCeEEEEeCCCcccCCccccc----cccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFP--FCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQG----LGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~--~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~----~~~~~l 166 (561)
..++|+++|.+|||||||+|+|++.....+..| ++|.+..... ..+..+.+|||||+......... +...+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999886556666 6777665432 23457999999999865432222 223334
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-hcch---hhccccccCcCCCCCcc---HHHHHHHhh
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LRRS---VDAKADSKKKMGPKKTD---EGEKKMLLG 239 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~---v~NK~D~~~~~~~~~~~---~~~l~~l~~ 239 (561)
...+.+|++++|+|++... ......+..+.+.+.. ...+ |+||+|+.......... ...+..+..
T Consensus 108 ~~~~~~~~~l~v~d~~~~~--------~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYT--------EEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HTTTCCSEEEEEEETTCCS--------SHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred hcCCCCcEEEEEeeCCCCC--------HHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 4457789999999864211 0111222222222211 1122 89999998654333111 123444444
Q ss_pred hcCCCcEEEEEccCC-----CCHHHHHHHHHhh
Q psy17315 240 RVGTNLKVGIVGVPN-----VGKSTFFNVLTKR 267 (561)
Q Consensus 240 ~~~~~~~i~isg~~~-----~Gks~l~~~l~~~ 267 (561)
.... ..+.++...+ .|+..|+..+...
T Consensus 180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~ 211 (239)
T 3lxx_A 180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRV 211 (239)
T ss_dssp HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-EEEEEECCCCccccHHHHHHHHHHHHHH
Confidence 4332 2344444332 4666777666554
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-12 Score=119.46 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=92.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++........|.......... .....+.+|||||...... + ....++.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ 99 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPD 99 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT----T---GGGGCTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH----H---HHhhccC
Confidence 4579999999999999999999987632211121111111001 1123689999999753321 1 1234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcC---------CCCCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKM---------GPKKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~---------~~~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+..+ ..+...+...... |+||+|+.+.. ............
T Consensus 100 ~d~~ilv~D~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 100 SDAVLICFDISRPE----------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 99999999876322 12222 2222333332211 89999997421 001112223333
Q ss_pred HhhhcCCCcEEEEEcc-CCCCHHHHHHHHHhh
Q psy17315 237 LLGRVGTNLKVGIVGV-PNVGKSTFFNVLTKR 267 (561)
Q Consensus 237 l~~~~~~~~~i~isg~-~~~Gks~l~~~l~~~ 267 (561)
+.........+.+|++ +|.|+..+++.+.+.
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 3333334567899999 689999999999875
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=122.14 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=91.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.||||||||+|++++.. ..+..++.++.+.... ... ...+.++||+|..... ..+. ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~---~~l~---~~~~ 109 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN---EWLH---DHCM 109 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHH---HHHH---HCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchh---hhHH---HHHH
Confidence 34799999999999999999999755 2334444443332111 111 2246789999864210 1111 1235
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+.+|++++|+|.+.. ..++.+..+...+.... .+ |+||+|+.+....... ....+....
T Consensus 110 ~~a~~~ilVydvt~~----------~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~---e~~~~a~~~- 175 (211)
T 2g3y_A 110 QVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVS---EGRACAVVF- 175 (211)
T ss_dssp CCCSEEEEEEETTCH----------HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHH---HHHHHHHHH-
T ss_pred hhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHH---HHHHHHHHc-
Confidence 778999999976532 22333433333443321 12 8999999754333221 111111111
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+||++|.|+..+++++.+..
T Consensus 176 ~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 176 DCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 23578899999999999999998763
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=131.89 Aligned_cols=160 Identities=12% Similarity=0.056 Sum_probs=101.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.||||||||+|+|++.. ..+++.+++|.+...+.. ....+.+|||||...... ..........++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME--NYFTKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH--HHHTTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh--hhhhhHHHHHhcc
Confidence 4789999999999999999998875 566778999988765422 235789999999753310 0001122334578
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCC---CccHHHHHHHhhh
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPK---KTDEGEKKMLLGR 240 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~---~~~~~~l~~l~~~ 240 (561)
+|++++|+|++..+ .++.+..+.+.+.++. .+ ++||+|+.+..... .........+...
T Consensus 81 ad~vi~V~D~t~~~----------s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~ 150 (307)
T 3r7w_A 81 VQVLIHVFDVESTE----------VLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE 150 (307)
T ss_dssp CSEEEEEEETTCSC----------HHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCChh----------hHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH
Confidence 99999999986422 2233333333333332 22 89999997411000 0011223333333
Q ss_pred cC--CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VG--TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~--~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+ ..+.+.+|+++ .|...++..+....
T Consensus 151 ~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 151 FGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 33 35778999999 78888888887763
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-12 Score=122.64 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=89.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++... ...++.++.+....... ...+.+|||||...... .+ ....++.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~---~~~~~~~ 78 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF---QL---LDRFKSS 78 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHH---HH---HHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcceeeEEEEecCCCccEEEEEECCCChhHHH---HH---HHHHHhh
Confidence 457999999999999999999998762 22334333322211111 35699999999853221 01 1223688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-----cch---hhccccccCcCCCCCccHHHHHHHhh----
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-----RRS---VDAKADSKKKMGPKKTDEGEKKMLLG---- 239 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~---- 239 (561)
+|++++|+|++.. .....+..+.+...+... ..+ |+||+|+........ ....+.....
T Consensus 79 ~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 79 ARAVVFVVDSAAF--------QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL-IQQQLEKELNTLRV 149 (214)
T ss_dssp EEEEEEEEETTTH--------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHH-HHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCc--------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHH-HHHHHHHHHHHHhc
Confidence 9999999987521 011122223333333321 112 899999985543211 1111221111
Q ss_pred -----------------hcC-------------CCcEEEEEccCC------CCHHHHHHHHHhh
Q psy17315 240 -----------------RVG-------------TNLKVGIVGVPN------VGKSTFFNVLTKR 267 (561)
Q Consensus 240 -----------------~~~-------------~~~~i~isg~~~------~Gks~l~~~l~~~ 267 (561)
... ....+.+|+++| .|++.++++|.+.
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 234688999999 9999999998764
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-12 Score=125.41 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=26.3
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+|+|+|+||+|...........+.+.+.+... +.+++++||+++.|+.++.+..
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~--~i~v~~~sa~~~~~~~~l~~~l 198 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKI 198 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT--TCCCCCC-----------CHHH
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc--CCeEEcCCCCCChhHHHHHHHH
Confidence 689999999995421111122334455555443 6778999999999998886543
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-12 Score=118.43 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=88.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.++|+++|.||||||||+|++++.. ..+..++.++.+.... ...+ ..+.++||+|..... ..+.. ...+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---~~~~~---~~~~ 79 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---EWLHD---HCMQ 79 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------CTTGG---GHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---hhHHH---hhcc
Confidence 4789999999999999999999754 3334444444332211 1112 246789999964311 11222 2346
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .++.+..+...+.... .+ |+||+|+........ .....+... ..
T Consensus 80 ~~~~~i~v~dv~~~~----------s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~---~~~~~~a~~-~~ 145 (192)
T 2cjw_A 80 VGDAYLIVYSITDRA----------SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV---SEGRAXAVV-FD 145 (192)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH---HHHHHHHHH-TT
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH---HHHHHHHHH-hC
Confidence 789999999875322 2333333333343331 12 899999875333221 111111111 12
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+.+||++|.|+..+++++.+.
T Consensus 146 ~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 146 XKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CceEEeccccCCCHHHHHHHHHHH
Confidence 356889999999999999999876
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-12 Score=122.15 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccc-cCccc-cc-c----CCeEEEEeCCCcccCCccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTI-DPNEN-NK-V----PAFLNVVDIAGLVKGAAEGQGLGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~-~~~~~-~~-~----~~~i~l~DtpG~~~~~~~~~~~~~~~l 166 (561)
..++|+++|.+|||||||+|+|++.. .....++.++. +.... .. . ...+.++||||..... ....
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~ 91 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK-------EQIS 91 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH-------HHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH-------HHHH
Confidence 34799999999999999999999873 11223333321 22221 11 1 2368999999985322 1234
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc------h---hhccccccC-cCCCCCccHHHHHH
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR------S---VDAKADSKK-KMGPKKTDEGEKKM 236 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~---v~NK~D~~~-~~~~~~~~~~~l~~ 236 (561)
..++.+|++++|+|++... .+..+..+...+..... + |+||+|+.+ ..... ......
T Consensus 92 ~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~---~~~~~~ 158 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSME----------SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR---LDMAQD 158 (208)
T ss_dssp TTCCCCCEEEEEEETTCHH----------HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC---HHHHHH
T ss_pred HHHhhCcEEEEEEECCCHH----------HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC---HHHHHH
Confidence 5578899999999876321 22333333333433221 2 999999985 33322 223333
Q ss_pred HhhhcCCCcEEEEEccC-CCCHHHHHHHHHhh
Q psy17315 237 LLGRVGTNLKVGIVGVP-NVGKSTFFNVLTKR 267 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~-~~Gks~l~~~l~~~ 267 (561)
+..... ...+.+|+++ |.|+..++++|.+.
T Consensus 159 ~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 159 WATTNT-LDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp HHHHTT-CEEEECCC-------CHHHHHHHHH
T ss_pred HHHHcC-CEEEEeccCCCCcCHHHHHHHHHHH
Confidence 333322 4678999999 99999999999876
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-12 Score=130.70 Aligned_cols=149 Identities=16% Similarity=0.148 Sum_probs=89.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
..++|+++|.+|||||||+|+|++.... ...| |...... ......+.++||||..... ......++.+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a 233 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNT 233 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----C-------CSHHHHHTTE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Cccc--ccceEEEEEecCcEEEEEEECCCCHhHH-------HHHHHHhccC
Confidence 4579999999999999999999987621 2223 3332221 1234579999999953222 1223446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
|++++|+|++..+ .+..+. .+...+... ..+ |+||+|+.+.. ....+...... .
T Consensus 234 d~vilV~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-----~~~~i~~~~~~~~~~~ 298 (329)
T 3o47_A 234 QGLIFVVDSNDRE----------RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRH 298 (329)
T ss_dssp EEEEEEEETTCSS----------SHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHHTCTTCCS
T ss_pred CEEEEEEECCchH----------HHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-----CHHHHHHHhchhhhhc
Confidence 9999999876322 111121 111222211 111 89999997432 12223222222 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..++++|.+..
T Consensus 299 ~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 299 RNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 234578999999999999999998764
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.9e-13 Score=132.73 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=91.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC------cccCCCc----------------------ccccCcc-----------
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA------AAENFPF----------------------CTIDPNE----------- 135 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~------~~~~~~~----------------------~T~~~~~----------- 135 (561)
..++|+++|.||||||||+|+|++... .++..|+ +|++...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999873 3455665 4443110
Q ss_pred c----c---------c--cCCeEEEEeCCCcccCCcc--cc----ccccccccccccCCEEE-EEecccccchhhhccch
Q psy17315 136 N----N---------K--VPAFLNVVDIAGLVKGAAE--GQ----GLGNAFLSHISACDAIF-HLCKEKLRNIFFISLNT 193 (561)
Q Consensus 136 ~----~---------~--~~~~i~l~DtpG~~~~~~~--~~----~~~~~~l~~i~~~D~il-~VvD~~~~~~~~~~~~~ 193 (561)
+ . . ....+.||||||+...... .. .+......+++.++.++ +|+|++..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------- 175 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------- 175 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC---------
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc---------
Confidence 0 0 0 0257999999999753210 01 22233345667777655 78887521
Q ss_pred hhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 194 ITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 194 ~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.. ......+...+.....+ |+||+|+.+.... ....+....... +....+.+|+++|.|+.++++++.+.
T Consensus 176 ~~-~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 176 LA-NSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD---ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GG-GCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC---CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred hh-hhHHHHHHHHhCCCCCeEEEEEEccccCCCCch---HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 00 00110112222222222 8999999854321 111121110011 12256789999999999999998774
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-12 Score=118.09 Aligned_cols=155 Identities=10% Similarity=0.025 Sum_probs=88.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcc--cccCcccc---ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFC--TIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~--T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.+|||||||+|.+++..... ...+. |....... .....+.+|||||...... +.......+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~~~~~~ 93 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD----PTFDYEMIF 93 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC----TTCCHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHh----hhhhccccc
Confidence 45899999999999999999999864211 11221 11111100 1234799999999754221 110003456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cc--h---hhccccccCcCCCCCccHHH-----HHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RR--S---VDAKADSKKKMGPKKTDEGE-----KKM 236 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~--~---v~NK~D~~~~~~~~~~~~~~-----l~~ 236 (561)
+.+|++++|+|++.. ..+.++.+...+.+. .. + |+||+|+........ .... ...
T Consensus 94 ~~~~~~i~v~d~~~~-----------~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~v~~~~~~~ 161 (196)
T 3llu_A 94 RGTGALIYVIDAQDD-----------YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE-TQRDIHQRANDD 161 (196)
T ss_dssp HTCSEEEEEEETTSC-----------CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH-HHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCc-----------hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhH-HHhHHHHHHHHH
Confidence 889999999987631 122333333344333 11 1 899999863210000 0011 111
Q ss_pred Hhhh---cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 237 LLGR---VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 237 l~~~---~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+... ......+.+|+++ .|+..+++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 162 LADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred HHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 1111 1233568999999 9999999999875
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-12 Score=143.24 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=100.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcc--------------cccCcccc---------------------
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFC--------------TIDPNENN--------------------- 137 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~--------------T~~~~~~~--------------------- 137 (561)
..+++|+++|.||+|||||+|+|+|.. ..++..|++ |+....+.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 456899999999999999999999988 677777777 43210000
Q ss_pred -------------------ccC-----CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccch
Q psy17315 138 -------------------KVP-----AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNT 193 (561)
Q Consensus 138 -------------------~~~-----~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~ 193 (561)
..+ ..+.||||||+..... ........++.||++++|+|++...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~-------- 214 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPC-------- 214 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTT--------
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCcc--------
Confidence 000 3699999999975321 2234456778999999999875211
Q ss_pred hhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHH-------HHH-----HHhhhc-------CCCcEEEEEc
Q psy17315 194 ITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEG-------EKK-----MLLGRV-------GTNLKVGIVG 251 (561)
Q Consensus 194 ~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~-------~l~-----~l~~~~-------~~~~~i~isg 251 (561)
.....+.+.+.+.....+ |+||+|+............ .+. .+.... .....+.+|+
T Consensus 215 --s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSA 292 (695)
T 2j69_A 215 --TLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSS 292 (695)
T ss_dssp --CHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCH
T ss_pred --chhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeC
Confidence 011122222223222222 8999999754322221110 111 111111 1236799999
Q ss_pred c--------------CCCCHHHHHHHHHhhc
Q psy17315 252 V--------------PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 252 ~--------------~~~Gks~l~~~l~~~~ 268 (561)
+ ++.|+..|++.|.+..
T Consensus 293 k~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 293 IQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9 9999999999998753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-12 Score=114.82 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=78.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++.+.+..+. ..++++|++ +....+......+.+|||+|.++ ...+...+.+.....+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG-GRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEEETTEEEEEEEEECC----------------CCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc--CCCCccccceEEEEEECCEEEEEEEEECCCCcc-chhhhhhhhhhCCEEEEE
Confidence 57999999999999999999876432 333334443 21122222334678999999643 333443333222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ .+.+.+.+..+..++.. +.........|+++|+||+|. .....
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ilv~nK~Dl--~~~~~ 123 (166)
T 3q72_A 80 Y----------------SVTDKGSFEKASELRVQ------------------LRRARQTDDVPIILVGNKSDL--VRSRE 123 (166)
T ss_dssp E----------------ETTCHHHHHHHHHHHHH------------------HHHCC---CCCEEEEEECTTC--CSSCC
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEecccc--ccccc
Confidence 1 12223333333333222 111111247899999999954 32223
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
...+...++.... +.+++++||++|.|++++.+...+
T Consensus 124 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 124 VSVDEGRACAVVF--DCKFIETSAALHHNVQALFEGVVR 160 (166)
T ss_dssp SCHHHHHHHHHHT--TCEEEECBGGGTBSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHH
Confidence 3344444555444 678999999999999887655444
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=123.74 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=96.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-c---cCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-K---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|++++... ...+++++.+..... . ....+.++||||..... ......+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 224 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSY 224 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhc
Confidence 4568999999999999999999997653 223344443322211 1 12246699999975432 1223456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCC---------CCCccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMG---------PKKTDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~---------~~~~~~~~l 234 (561)
+.+|++++|+|++... .+..+. .+...+... ..+ |+||+|+..... .........
T Consensus 225 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPA----------SFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred cCCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 8899999999876322 122221 222333332 222 899999974310 011122223
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.........+.+|+++|.|+..+++.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3333333334689999999999999999998764
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.3e-12 Score=136.52 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=99.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
++++|+++|.+|+|||||+|+|++........||+|.+...... .+..+.||||||..... ......++.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-------~~~~~~~~~ 75 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-------AMRARGTQV 75 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-------TSBBSSSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-------HHHHHHHcc
Confidence 45789999999999999999999877555577899988755422 23479999999964332 223345678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc----CCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~~ 244 (561)
+|++++|+|++.... ....+.+ ..+.....+ ++||+|+........ ...+....... ...
T Consensus 76 aD~vILVVDa~dg~~-------~qt~e~l----~~~~~~~vPiIVViNKiDl~~~~~~~v--~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 76 TDIVILVVAADDGVM-------KQTVESI----QHAKDAHVPIVLAINKCDKAEADPEKV--KKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp BSSCEEECBSSSCCC-------HHHHHHH----HHHHTTTCCEEECCBSGGGTTTSCCSS--SSHHHHTTSCCCCSSSSE
T ss_pred CCEEEEEEECCCCcc-------HHHHHHH----HHHHHcCCcEEEEEecccccccchHHH--HHHHHhhhhhHHhcCCCc
Confidence 999999998863110 1111111 112222223 899999975432211 11222221111 123
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+||++|.|++.|++++....
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCchhHHHHHHHhh
Confidence 678999999999999999998753
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-12 Score=129.12 Aligned_cols=162 Identities=14% Similarity=0.022 Sum_probs=89.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC-c-----ccCCC---cccccCc--------------------------------
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA-A-----AENFP---FCTIDPN-------------------------------- 134 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~-~-----~~~~~---~~T~~~~-------------------------------- 134 (561)
.++|+++|.||||||||+|+|+|... . ++..| .+|+.+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 46899999999999999999999863 2 23345 3333210
Q ss_pred ------c----c---------cc--cCCeEEEEeCCCcccCCc------cccccccccccccccCCEEEEEecccccchh
Q psy17315 135 ------E----N---------NK--VPAFLNVVDIAGLVKGAA------EGQGLGNAFLSHISACDAIFHLCKEKLRNIF 187 (561)
Q Consensus 135 ------~----~---------~~--~~~~i~l~DtpG~~~~~~------~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~ 187 (561)
. + .. ...++.++||||+..... ....+......+++.+|++++|+|++.....
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 0 0 01 124699999999975221 1112334446678899999999986321100
Q ss_pred hhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccC---CCCHHH
Q psy17315 188 FISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVP---NVGKST 259 (561)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~---~~Gks~ 259 (561)
. .....+...+.....+ |+||+|+...... ....+...... ....+.+++||.+ +.|+..
T Consensus 184 --------~-~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~ 251 (315)
T 1jwy_B 184 --------N-SDALQLAKEVDPEGKRTIGVITKLDLMDKGTD---AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRE 251 (315)
T ss_dssp --------T-CSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC---CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHH
T ss_pred --------h-hHHHHHHHHhCCCCCcEEEEEcCcccCCcchH---HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHH
Confidence 0 0001122222222223 8999999854321 11112210011 1222345666776 889999
Q ss_pred HHHHHHhhcc
Q psy17315 260 FFNVLTKRAF 269 (561)
Q Consensus 260 l~~~l~~~~~ 269 (561)
+++.+.+...
T Consensus 252 l~~~~~~~~~ 261 (315)
T 1jwy_B 252 SLKSEILYFK 261 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999877643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=113.52 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=94.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+...-+.... ..+......+.+|||||.++ +..+...+.+....++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-YRTITTAYYRGAMGFIL 101 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-CHHHHHHHHTTCCEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-HHHHHHHHHccCCEEEE
Confidence 46899999999999999999999876555444332111111 11122334688999999543 44444444433332222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. ....
T Consensus 102 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piilv~nK~Dl--~~~~ 144 (191)
T 3dz8_A 102 MY----------------DITNEESFNAVQDWATQ------------------IKTYS-WDNAQVILVGNKCDM--EEER 144 (191)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTC--GGGC
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECCCC--cccc
Confidence 11 12222333333222221 22222 147899999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
....+...++.... +.+++++||++|.|+.++.+...+.+.
T Consensus 145 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 145 VVPTEKGQLLAEQL--GFDFFEASAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp CSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33445555555544 678999999999999888665554443
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-12 Score=124.89 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=89.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++.... ..+..++.+.... ......+.+|||||...... .....+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~ 99 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSY 99 (204)
Confidence 35689999999999999999999876522 2222233222111 11223567999999753321 123346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCCCC---------ccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGPKK---------TDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~~~---------~~~~~l 234 (561)
+.+|++++|+|++.... +..+. .+...+... ..+ |+||+|+.+...... ......
T Consensus 100 ~~~d~iilv~D~~~~~s----------~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 100 PQTDVFLICFSLVSPAS----------FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 88999999998763221 11111 111122211 112 899999975432110 001111
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.........+.+|+++|.|+..+++++.+.
T Consensus 170 ~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 111122222356889999999999999998764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=112.64 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=86.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+... +.++.+.. ....+... ...+.+|||||.++ +..+...+.+....++.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVED-YEPTKADS-YRKKVVLDGEEVQIDILDTAGQED-YAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSC-CCTTCCEE-EEEEEEETTEEEEEEEEECCC----CHHHHHHHHHHCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCC-CCCCcceE-EEEEEEECCEEEEEEEEECCCcch-hHHHHHHHhhcCCEEEE
Confidence 5799999999999999999998764332 22222221 01112222 23688999999643 33444333332222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..++.. +........+|+++|+||+|. ....
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~~ 125 (168)
T 1u8z_A 82 VF----------------SITEMESFAATADFREQ------------------ILRVKEDENVPFLLVGNKSDL--EDKR 125 (168)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHHCCTTSCEEEEEECGGG--GGGC
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEECccc--cccC
Confidence 11 11222333323222221 222221237899999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+++... +.+++++||++|.|++++.+...
T Consensus 126 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 126 QVSVEEAKNRADQW--NVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp CSCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEeCCCCCCCHHHHHHHHH
Confidence 33345566665554 57899999999999888755443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-12 Score=130.47 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=82.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--------------------------------------CcccCCC------ccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--------------------------------------AAAENFP------FCT 130 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--------------------------------------~~~~~~~------~~T 130 (561)
....|+++|+||||||||+|+|++.. +.+.+.| |+|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 46789999999999999999998621 0111222 344
Q ss_pred ccCcccc----ccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHH
Q psy17315 131 IDPNENN----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETR 206 (561)
Q Consensus 131 ~~~~~~~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~ 206 (561)
++..... ..+..+.++||||+..+. ......+|++++|+|++..+. ...+...
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~~~-------------~~~i~~~ 209 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGGDE-------------LQGIKRG 209 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH----------HHHHTTCSEEEEEECCC------------------------
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcchh-------------HHHhHHH
Confidence 4322221 134578999999985322 112467899999998753110 0001111
Q ss_pred HHHh-cchhhccccccCcCCCCCccHHHHHHHhhhc------CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 207 IRDL-RRSVDAKADSKKKMGPKKTDEGEKKMLLGRV------GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 207 l~~~-~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~------~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+. ...+.||+|+.+..... .....+...+... ...+.+.+||++|.|+..|+++|.+..
T Consensus 210 il~~~~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 210 IIEMADLVAVTKSDGDLIVPAR-RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp -CCSCSEEEECCCSGGGHHHHH-HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhcCCEEEEeeecCCCchhHH-HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 1111 11178999987321100 0011122211111 123568899999999999999998763
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=112.76 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=85.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+..... ++.++.. ...+... ...+.+|||||.++ +..+...+.+....++.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD-PTIEDFY-RKEIEVDSSPSVLEILDTAGTEQ-FASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEE-EEEEEETTEEEEEEEEECCCTTC-CHHHHHHHHHHCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC-CCcceeE-EEEEEECCEEEEEEEEECCCchh-hHHHHHHHhccCCEEEE
Confidence 579999999999999999999876543222 2222211 1112222 23588999999543 33333333322222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..++.. +.........|+++|+||+|. ....
T Consensus 81 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~~ 124 (167)
T 1kao_A 81 VY----------------SLVNQQSFQDIKPMRDQ------------------IIRVKRYEKVPVILVGNKVDL--ESER 124 (167)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHTTTSCCCEEEEEECGGG--GGGC
T ss_pred EE----------------eCCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECCcc--cccc
Confidence 11 11222232222222211 111111247899999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+...+++... +.+++++||++|.|++++.+...
T Consensus 125 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 125 EVSSSEGRALAEEW--GCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp CSCHHHHHHHHHHH--TSCEEEECTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--CCCEEEecCCCCcCHHHHHHHHH
Confidence 33344445555444 57899999999999988755543
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-12 Score=121.77 Aligned_cols=159 Identities=11% Similarity=0.096 Sum_probs=97.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc-ccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP-VRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp-~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+||++|+++++...|.....+++...... ...+......+.+|||+|. +++..+...+.+....++..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGq-e~~~~l~~~~~~~a~~~ilv 92 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL-ERFRSLIPSYIRDSAAAVVV 92 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCT-TTCGGGHHHHHTTCSEEEEE
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCc-hhhhhHHHHHhccccEEEEE
Confidence 479999999999999999999887765444332211100 0111112245789999995 44555666665555444333
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ .+.+.+.+..+..|+.. +..... ...|+++|+||+| +.....
T Consensus 93 ~----------------di~~~~Sf~~i~~~~~~------------------i~~~~~-~~~piilVgNK~D--l~~~r~ 135 (216)
T 4dkx_A 93 Y----------------DITNVNSFQQTTKWIDD------------------VRTERG-SDVIIMLVGNKTD--LADKRQ 135 (216)
T ss_dssp E----------------ETTCHHHHHTHHHHHHH------------------HHHHHT-TSSEEEEEEECTT--CGGGCC
T ss_pred e----------------ecchhHHHHHHHHHHHH------------------HHHhcC-CCCeEEEEeeccc--hHhcCc
Confidence 3 34555666666555443 121221 4689999999995 433334
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
...++..+++... +.+++.+||++|.|++++.+...+.
T Consensus 136 V~~~e~~~~a~~~--~~~~~e~SAktg~nV~e~F~~i~~~ 173 (216)
T 4dkx_A 136 VSIEEGERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAA 173 (216)
T ss_dssp SCHHHHHHHHHHH--TCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ccHHHHhhHHHHh--CCeeEEEeCCCCcCHHHHHHHHHHH
Confidence 4456666666665 6889999999999998886665443
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-11 Score=125.86 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=92.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccc--------------cCccc-------cccCCeEEEEeCCCc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTI--------------DPNEN-------NKVPAFLNVVDIAGL 151 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~--------------~~~~~-------~~~~~~i~l~DtpG~ 151 (561)
...++|+++|.+|+|||||+|+|++.. .....+++.|. +.... ......+.++||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 345899999999999999999999854 22222222221 10000 001146899999995
Q ss_pred ccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccccccCcCCCC
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKADSKKKMGPK 227 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~D~~~~~~~~ 227 (561)
. .+.......++.+|++++|+|++... +.....+.+ ..+..+.. + ++||+|+.......
T Consensus 86 ~-------~~~~~~~~~~~~~D~~ilVvda~~~~------~~~qt~~~~----~~~~~~~~~~iivviNK~Dl~~~~~~~ 148 (403)
T 3sjy_A 86 E-------VLMATMLSGAALMDGAILVVAANEPF------PQPQTREHF----VALGIIGVKNLIIVQNKVDVVSKEEAL 148 (403)
T ss_dssp G-------GGHHHHHHHHTTCSEEEEEEETTSCS------SCHHHHHHH----HHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred H-------HHHHHHHHHHhhCCEEEEEEECCCCC------CcHHHHHHH----HHHHHcCCCCEEEEEECccccchHHHH
Confidence 3 22334456678899999999986321 011111111 12222222 2 89999997432110
Q ss_pred CccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 228 KTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 228 ~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+....... ...+.+.+||++|.|+.+|+++|.+..
T Consensus 149 -~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 149 -SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp -HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 0111122222211 245789999999999999999998864
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=131.44 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC----------------cc------cCCCcccccCccc--cccCCeEEEEeCCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA----------------AA------ENFPFCTIDPNEN--NKVPAFLNVVDIAGL 151 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~----------------~~------~~~~~~T~~~~~~--~~~~~~i~l~DtpG~ 151 (561)
..+|+++|.+|||||||+|+|+.... .+ ...+|+|...... ...+..+.||||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 35899999999999999999962210 01 1124556554332 123457999999998
Q ss_pred ccCCccccccccccccccccCCEEEEEeccc
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.... ......++.+|++++|+|++
T Consensus 93 ~df~-------~~~~~~l~~aD~allVvDa~ 116 (528)
T 3tr5_A 93 ADFT-------EDTYRTLTAVDSALMVIDAA 116 (528)
T ss_dssp TTCC-------HHHHHGGGGCSEEEEEEETT
T ss_pred hhHH-------HHHHHHHHhCCEEEEEEeCC
Confidence 6433 23456678999999999986
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=133.03 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=88.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCccccc----Cccc------cccCCeEEEEeCCCcccCCccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTID----PNEN------NKVPAFLNVVDIAGLVKGAAEGQGLG 162 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~----~~~~------~~~~~~i~l~DtpG~~~~~~~~~~~~ 162 (561)
..++|+++|.||||||||+|+|++... ...+..|.+.. ++.+ ......+.++||||..... .+.
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----~~~ 115 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----ASH 115 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT----TTC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH----HHH
Confidence 457999999999999999999998762 22222222211 1110 1124579999999954322 122
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKML 237 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l 237 (561)
.. .++.+|++++|+|++. .+.+..+..++.... .+ |+||+|+.+..... .......
T Consensus 116 ~~---~l~~~d~ii~V~D~s~-------------~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~---~~~~~~~ 176 (535)
T 3dpu_A 116 QF---FMTRSSVYMLLLDSRT-------------DSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE---QKKINER 176 (535)
T ss_dssp HH---HHHSSEEEEEEECGGG-------------GGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC---HHHHHHH
T ss_pred HH---HccCCcEEEEEEeCCC-------------chhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC---HHHHHHH
Confidence 22 3567999999998752 133344445555544 22 89999998654332 2333333
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.... ..+.+.+|+++|.|+..|++++.+....
T Consensus 177 ~~~~-~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 177 FPAI-ENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CGGG-TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHhc-CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 3222 2358999999999999999999987543
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-11 Score=113.02 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=90.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+||++|++.+.+..+... +.++.+.. -...+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFVED-YEPTKADS-YRKKVVLDGEEVQIDILDTAGQED-YAAIRDNYFRSGEGFL 94 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCTTCCEE-EEEEEEETTEEEEEEEEECCCTTC-CHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCc-CCCccceE-EEEEEEECCEEEEEEEEECCCCcc-cHHHHHHHhccCCEEE
Confidence 36799999999999999999998764332 22222221 011122222 3688999999543 3333333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +.........|+++|+||+|. ...
T Consensus 95 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 138 (187)
T 2a9k_A 95 CVF----------------SITEMESFAATADFREQ------------------ILRVKEDENVPFLLVGNKSDL--EDK 138 (187)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHHCCTTCCEEEEEECGGG--GGG
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--ccc
Confidence 111 12222333333232221 222221237899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+++.++++.. +.+++++||+++.|+.++.+...+.+
T Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 139 RQVSVEEAKNRAEQW--NVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHc--CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 333455666666654 67899999999999988866554443
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-11 Score=115.26 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=83.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccC-CCcccccCcccc-------ccCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAEN-FPFCTIDPNENN-------KVPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~-~~~~T~~~~~~~-------~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
++|+++|.+|||||||+|+|++.. ...+. .|..+.+..... .....+.++||||...... +. ..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~---~~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----TH---PH 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT----TS---HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----hh---HH
Confidence 689999999999999999999853 22222 122222211110 1234689999999753221 11 22
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
.++.+|++++|+|.+... ..+..+..+...+.... .+ |+||+|+.+..............+.....
T Consensus 76 ~~~~~~~~i~v~d~~~~~---------~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQ---------AEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRG 146 (184)
T ss_dssp HHHHSEEEEEEEEGGGCH---------HHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred HccCCcEEEEEEeCCcch---------hHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence 356789999999865311 11223322222222221 12 78999997321100000011112221122
Q ss_pred CC---cEEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 243 TN---LKVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~---~~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
.. ..+.+|+++|. |...|++.+.+..
T Consensus 147 ~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 147 FPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp SCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 11 26889999997 9999999998764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-11 Score=124.98 Aligned_cols=130 Identities=15% Similarity=0.037 Sum_probs=83.6
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhh-hcCCCCc-----cCCCChHH----HHHHHHHHHhcCCCc--ccccc
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQIL-ISDKPTW-----GDGDGPKA----PKRRKQHLSDKLRPK--ADSKK 74 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~-~~~k~~l-----~DL~~~~~----~~~w~~~l~~~~~~~--~~~~~ 74 (561)
+.+++|+|||.| ..+.| .|+++.... ..++|.+ +||+++.. ++.|.+++++.+..+ +++..
T Consensus 88 D~v~~V~~~~~p------~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~ 160 (307)
T 1t9h_A 88 DQAVLVFSAVQP------SFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD 160 (307)
T ss_dssp CEEEEEEESTTT------TCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred CEEEEEEeCCCC------CCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 567999999999 88888 787722211 1455554 99998754 789999998877766 56666
Q ss_pred ccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCC-------cccccCccccccCCeEEEE
Q psy17315 75 KMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFP-------FCTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~-------~~T~~~~~~~~~~~~i~l~ 146 (561)
+.+....... ..+-.++++|.||||||||+|+|.+.. ..++..+ ++|+.... ...+ ..+++
T Consensus 161 ~~g~~~L~~~---------~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~-~~~~-~g~v~ 229 (307)
T 1t9h_A 161 QDSLADIIPH---------FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL-IHTS-GGLVA 229 (307)
T ss_dssp HTTCTTTGGG---------GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE-EEET-TEEEE
T ss_pred CCCHHHHHhh---------cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH-hhcC-CEEEe
Confidence 6554432111 124579999999999999999999865 4444443 34543221 1222 46899
Q ss_pred eCCCcccC
Q psy17315 147 DIAGLVKG 154 (561)
Q Consensus 147 DtpG~~~~ 154 (561)
||||+...
T Consensus 230 dtpg~~~~ 237 (307)
T 1t9h_A 230 DTPGFSSL 237 (307)
T ss_dssp SSCSCSSC
T ss_pred cCCCcccc
Confidence 99998753
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.6e-11 Score=129.80 Aligned_cols=156 Identities=16% Similarity=0.049 Sum_probs=91.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccC-------------------------------CCcccccCcccc--ccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAEN-------------------------------FPFCTIDPNENN--KVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~-------------------------------~~~~T~~~~~~~--~~~ 140 (561)
...++|+++|.||+|||||+|+|++....+.. .+|+|.+..... ...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45689999999999999999999876422111 267787765542 234
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
..+.||||||... +.......++.+|++++|+|++...... ......+.......+..+... |+|
T Consensus 245 ~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e~----~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 245 ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFES----GFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp CEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHHT----TCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred ceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCcccc----cchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 5799999999843 2334466778999999999986321000 000000011111112222222 799
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKSTF 260 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~l 260 (561)
|+|+.+..... ......+..+..... ..+.+.+||++|.|+..+
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99997421100 001122223322222 346799999999999754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-11 Score=110.49 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=81.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHH-HHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKE-INKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~-~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+... ..++|+.-....+...+ ..+.+|||||.... ...+...+.+.....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL--HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc--cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 35799999999999999999998754322 22233321111222222 36789999996542 122222222222111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+.+.+..+..++.. +........+|+++|+||+|. ..
T Consensus 82 i~v~----------------d~~~~~s~~~~~~~~~~------------------l~~~~~~~~~piilv~NK~Dl--~~ 125 (175)
T 2nzj_A 82 VIVY----------------SIADRGSFESASELRIQ------------------LRRTHQADHVPIILVGNKADL--AR 125 (175)
T ss_dssp EEEE----------------ETTCHHHHHHHHHHHHH------------------HHHCC----CCEEEEEECTTC--TT
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhhccCCCCEEEEEEChhh--cc
Confidence 1111 12222333322222211 211111137899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......++..++.... +.+++++||++|.|++++.+.....+
T Consensus 126 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 126 CREVSVEEGRACAVVF--DCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TCCSCHHHHHHHHHHH--TSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 2222334444554443 57899999999999988866554443
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=131.88 Aligned_cols=154 Identities=20% Similarity=0.177 Sum_probs=91.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-------CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-------AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFL 166 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-------~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l 166 (561)
.++|+++|.+|+|||||+|+|++.. ......+|+|.+..... ..+..+.++||||... +.....
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~~~~~~ 91 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVV 91 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------HHHHHH
Confidence 4789999999999999999999876 23455678887764432 1234799999999742 223345
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh---
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--- 240 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--- 240 (561)
..++.+|++++|+|++..- .....+.+.. +..+..+ ++||+|+....... ....++..+...
T Consensus 92 ~~~~~aD~~ilVvda~~g~-------~~qt~e~l~~----~~~~~ip~IvviNK~Dl~~~~~~~-~~~~~l~~~l~~~~~ 159 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGP-------KTQTGEHMLI----LDHFNIPIIVVITKSDNAGTEEIK-RTEMIMKSILQSTHN 159 (482)
T ss_dssp HHTTSCCEEEEEEETTTCS-------CHHHHHHHHH----HHHTTCCBCEEEECTTSSCHHHHH-HHHHHHHHHHHHSSS
T ss_pred HHHhhCCEEEEEEecCCCc-------cHHHHHHHHH----HHHcCCCEEEEEECCCcccchhHH-HHHHHHHHHHhhhcc
Confidence 6678899999999886310 1111222221 2222222 89999997321110 011122232222
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+.+||++|.|+..|+++|.+..
T Consensus 160 ~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 160 LKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 2245789999999999999999998853
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-11 Score=114.00 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=91.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+... +.++.+..- ...+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFVED-YEPTKADSY-RKKVVLDGEEVQIDILDTAGQED-YAAIRDNYFRSGEGFL 90 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCTTCCEEE-EEEEEETTEEEEEEEEECCCTTC-CHHHHHHHHHHCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCccceEE-EEEEEECCEEEEEEEEcCCChhh-hHHHHHHHHhhCCEEE
Confidence 46899999999999999999998764332 222222211 11122222 3688999999543 3333333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +.........|+++|+||+|. ...
T Consensus 91 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 134 (206)
T 2bov_A 91 CVF----------------SITEMESFAATADFREQ------------------ILRVKEDENVPFLLVGNKSDL--EDK 134 (206)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHTTCSCCCEEEEEECTTC--GGG
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEeccCc--ccc
Confidence 111 12222333333232221 222221237899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+++.+++... +.+++++||++|.|++++.+.....+.
T Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 135 RQVSVEEAKNRAEQW--NVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333455566666554 578999999999999988766555443
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=111.85 Aligned_cols=157 Identities=11% Similarity=0.086 Sum_probs=84.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+. .+.. .....+......+.+|||||.++ +..+...+.+....++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT-IEDSYRKQVEVDCQQCMLEILDTAGTEQ-FTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC-SEEEEEEEEESSSCEEEEEEEEECSSCS-STTHHHHHHHHCSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-ccceEEEEEEECCEEEEEEEEECCChHH-HHHHHHHHhccCCEEEEE
Confidence 57999999999999999999987554332221 1211 00011111234688999999532 222222222222111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ .+.+.+.+..+..++. .+........+|+++|+||+|. .....
T Consensus 82 ~----------------d~~~~~s~~~~~~~~~------------------~i~~~~~~~~~piilv~nK~Dl--~~~~~ 125 (167)
T 1c1y_A 82 Y----------------SITAQSTFNDLQDLRE------------------QILRVKDTEDVPMILVGNKCDL--EDERV 125 (167)
T ss_dssp E----------------ETTCHHHHHTHHHHHH------------------HHHHHHCCSCCCEEEEEECTTC--GGGCC
T ss_pred E----------------ECCCHHHHHHHHHHHH------------------HHHHhhCcCCCcEEEEEECccc--ccccc
Confidence 1 1122222222222211 1222111247899999999954 33223
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+.+.++++.. ++.+++++||++|.|++++.+..
T Consensus 126 ~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 126 VGKEQGQNLARQW-CNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp SCHHHHHHHHHHT-TSCEEEECBTTTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHc-cCCcEEEecCCCCCCHHHHHHHH
Confidence 3345555555543 36789999999999988775443
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-11 Score=111.27 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=81.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+.....++ .+.+... .+.. ....+.+|||+|.++....+...+.+....++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME--NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC--CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 47899999999999999999876443332222 1222221 1222 23467899999965432223322222222111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +.........|+++|+||+|. ...
T Consensus 81 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ilv~nK~Dl--~~~ 124 (169)
T 3q85_A 81 IVF----------------SVTDRRSFSKVPETLLR------------------LRAGRPHHDLPVILVGNKSDL--ARS 124 (169)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSTTSCCCEEEEEECTTC--GGG
T ss_pred EEE----------------ECCChHHHHHHHHHHHH------------------HHhcccCCCCCEEEEeeCcch--hhc
Confidence 111 12222333333232221 111111137899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+...++.... +.+++++||+++.|+.++.+...+
T Consensus 125 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 125 REVSLEEGRHLAGTL--SCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc--CCcEEEecCccCCCHHHHHHHHHH
Confidence 334455555666554 678999999999999887555443
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=108.86 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=89.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++........|..+.+...+ ... ...+.++||||...... +. ....+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~~---~~~~~~ 77 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR----IT---SAYYRG 77 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC----CC---HHHHTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh----hh---HHHHhc
Confidence 36899999999999999999998763333333333222222 111 23577899999753321 11 223467
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+... .+..+..+...+... ..+ ++||+|+.+...... .....+... ....
T Consensus 78 ~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~---~~a~~l~~~-~~~~ 143 (199)
T 2f9l_A 78 AVGALLVYDIAKHL----------TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT---DEARAFAEK-NNLS 143 (199)
T ss_dssp CSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---HHHHHHHHH-TTCE
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH---HHHHHHHHH-cCCe
Confidence 89999999875321 122222222222222 111 899999975443321 222222222 2335
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+||+++.|...+++++.+..
T Consensus 144 ~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 144 FIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 67799999999999999998764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-10 Score=107.28 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=90.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc-C--CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV-P--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~-~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++++++|.+|||||||+|+|++........|..+.+...+ ... + ..+.++||||...... + ....++.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~---~~~~~~~ 101 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA----I---TSAYYRG 101 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC----C---CHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh----h---hHHHhhc
Confidence 47899999999999999999998774333334333332222 111 2 2456799999754321 1 1233467
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|.+++|+|..... .++.+..+...+.... .+ ++||+|+.+..... ......+... ....
T Consensus 102 ~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~---~~~a~~l~~~-~~~~ 167 (191)
T 1oix_A 102 AVGALLVYDIAKHL----------TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP---TDEARAFAEK-NGLS 167 (191)
T ss_dssp CCEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHH-TTCE
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---HHHHHHHHHH-cCCE
Confidence 89999999865211 1222322222222211 11 89999997543322 1222222222 2335
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+||+++.|...+++++.+.
T Consensus 168 ~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 168 FIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 6779999999999999999765
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-11 Score=111.76 Aligned_cols=164 Identities=13% Similarity=0.142 Sum_probs=91.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh-----------hHhhhcccHHHHHHHHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII-----------NEELRLKDVEHIEKEINKIEKL 312 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~-----------~~el~l~Dt~Gi~~~~~~l~~~ 312 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+......+... ...+.+|||||.++ +..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~ 89 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-FRSLTTA 89 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-GHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-HHHHHHH
Confidence 36799999999999999999998765544333222111101111111 23688999999643 3333333
Q ss_pred HhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEec
Q psy17315 313 VQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVN 392 (561)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~N 392 (561)
+.+....++..+ ++.+.+.+..+..++.. +.........|+++|+|
T Consensus 90 ~~~~~d~~i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 90 FFRDAMGFLLLF----------------DLTNEQSFLNVRNWISQ------------------LQMHAYSENPDIVLCGN 135 (195)
T ss_dssp TTTTCSEEEEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSSSSSCCEEEEEE
T ss_pred HHcCCCEEEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEE
Confidence 332222211111 11112222222222111 22121114789999999
Q ss_pred CChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 393 K~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
|+|. ........+.+.+++... +.+++++||+++.|+.++.+...+.+.+
T Consensus 136 K~Dl--~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 136 KSDL--EDQRAVKEEEARELAEKY--GIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp CTTC--GGGCCSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred Cccc--ccccccCHHHHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9954 332233345555655544 5789999999999998887665554443
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-11 Score=112.70 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=86.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+..... ++.++ ... .+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYD-PTIED--SYRKQVVIDGETCLLDILDTAGQEE-YSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCC-TTCCE--EEEEEEEETTEEEEEEEEECCCC----CTTHHHHHHHCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCchh--eEEEEEEECCcEEEEEEEECCCcHH-HHHHHHHHHhcCCEEE
Confidence 579999999999999999999876433222 21121 111 111222 3477899999543 3333333322222211
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +.........|+++|+||+|. ..
T Consensus 81 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~i~v~nK~Dl--~~- 123 (189)
T 4dsu_A 81 CVF----------------AINNTKSFEDIHHYREQ------------------IKRVKDSEDVPMVLVGNKCDL--PS- 123 (189)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHTTCSCCCEEEEEECTTS--SS-
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEECccC--cc-
Confidence 111 11222333322222221 222222247899999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+.+.++.... +.+++++||++|.|+.++.+...+.+
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 124 RTVDTKQAQDLARSY--GIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CSSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 233344555555544 57899999999999988866655543
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-12 Score=122.75 Aligned_cols=163 Identities=17% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc--chh-hhhHhhhcccHHHH---------HHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR--DIE-IINEELRLKDVEHI---------EKEINKIE 310 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~--~~~-~~~~el~l~Dt~Gi---------~~~~~~l~ 310 (561)
...+|.+.|.+|+|||+|+|.+++..+ ...++..+|++.... .+. ..+..+.+|||||+ ++.+..+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKR-LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSS-SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc-ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 347899999999999999999998741 123334445542221 222 22357889999996 33333333
Q ss_pred HHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEE
Q psy17315 311 KLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYL 390 (561)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv 390 (561)
..+.+..... +++..|++ .. ..+...+..++..+.. ..+|+++|
T Consensus 107 ~~~~~~~~~~-------------------------d~vi~v~d------~~----~~~~~~~~~~~~~l~~-~~~p~i~v 150 (223)
T 4dhe_A 107 SSYLQTRPQL-------------------------CGMILMMD------AR----RPLTELDRRMIEWFAP-TGKPIHSL 150 (223)
T ss_dssp HHHHHHCTTE-------------------------EEEEEEEE------TT----SCCCHHHHHHHHHHGG-GCCCEEEE
T ss_pred HHHHhcCcCc-------------------------CEEEEEEe------CC----CCCCHHHHHHHHHHHh-cCCCEEEE
Confidence 3322211110 11111111 00 1233444554444433 57999999
Q ss_pred ecCChhhhhhhccchHHHHHHHHHhc-----CCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 391 VNLSAKDYIKKKNKWLPKIKEWVDAN-----DPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 391 ~NK~D~d~~~~~~~~~~~l~~~~~~~-----~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
+||+|...........+.+.+.+... ..+.+++++||++|.|+.+|.+...+
T Consensus 151 ~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 151 LTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred EeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 99995422111112233344433331 13678999999999999888655443
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.2e-10 Score=110.51 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=87.8
Q ss_pred CCCcEEEEEEcC---------CCCHHHHHHHHhcC---CCcccCCCcc-cccCcccc------------------ccCCe
Q psy17315 94 GTNLKVGIVGVP---------NVGKSTFFNVLTKS---SAAAENFPFC-TIDPNENN------------------KVPAF 142 (561)
Q Consensus 94 ~~~~~v~ivG~p---------nvGKStlin~L~~~---~~~~~~~~~~-T~~~~~~~------------------~~~~~ 142 (561)
...++|+++|.| |||||||+|+|++. .......|.+ +.+..... .....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 345899999999 99999999999984 2322333332 22221110 01234
Q ss_pred EEEEe------CCCcccCCcc---------c-----------------cccccccccc-----cccCCEEEEEecccccc
Q psy17315 143 LNVVD------IAGLVKGAAE---------G-----------------QGLGNAFLSH-----ISACDAIFHLCKEKLRN 185 (561)
Q Consensus 143 i~l~D------tpG~~~~~~~---------~-----------------~~~~~~~l~~-----i~~~D~il~VvD~~~~~ 185 (561)
+.+|| |||....... + .++...|... +++||++++|+|++...
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 67777 6665433221 0 0011111111 12699999999886320
Q ss_pred hhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHH
Q psy17315 186 IFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKS 258 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks 258 (561)
...++.++.+...+... ..+ |+||+|+..... ......+.........+.+|+++|.|+.
T Consensus 177 --------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~e~SAk~g~gv~ 243 (255)
T 3c5h_A 177 --------NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-----IRDAHTFALSKKNLQVVETSARSNVNVD 243 (255)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-----HHHHHHHHHTSSSCCEEECBTTTTBSHH
T ss_pred --------hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-----HHHHHHHHHhcCCCeEEEEECCCCCCHH
Confidence 01222333322333222 122 899999963211 1122222222234578899999999999
Q ss_pred HHHHHHHhh
Q psy17315 259 TFFNVLTKR 267 (561)
Q Consensus 259 ~l~~~l~~~ 267 (561)
.++++|.+.
T Consensus 244 elf~~l~~~ 252 (255)
T 3c5h_A 244 LAFSTLVQL 252 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-11 Score=110.23 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=85.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+.. ...+.. ....+.+|||||.++ +..+...+.+....++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL-TKKLNIGGKRVNLAIWDTAGQER-FHALGPIYYRDSNGAI 83 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE-EEEEESSSCEEEEEEEECCCC--------CCSSTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE-EEEEEECCEEEEEEEEECCCcHh-hhhhHHHHhccCCEEE
Confidence 357999999999999999999988654443333211110 011222 223678999999533 3322222211111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
. +- ++.+.+.+..+..++.. +..... ...|+++|+||+|. ...
T Consensus 84 ~--------------v~--d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piilv~nK~Dl--~~~ 126 (170)
T 1z08_A 84 L--------------VY--DITDEDSFQKVKNWVKE------------------LRKMLG-NEICLCIVGNKIDL--EKE 126 (170)
T ss_dssp E--------------EE--ETTCHHHHHHHHHHHHH------------------HHHHHG-GGSEEEEEEECGGG--GGG
T ss_pred E--------------EE--ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCeEEEEEECccc--ccc
Confidence 1 11 12222333333333222 111111 46899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....+++.+++... +.+++++||++|.|++++.+...
T Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 127 RHVSIQEAESYAESV--GAKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence 333445566666554 67899999999999888755443
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-12 Score=132.22 Aligned_cols=163 Identities=22% Similarity=0.235 Sum_probs=91.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhh-hHhhhcccHHHHHHHH--HHHHHHHhhCCcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EII-NEELRLKDVEHIEKEI--NKIEKLVQRGDKK 319 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~-~~el~l~Dt~Gi~~~~--~~l~~~~~~~~~~ 319 (561)
-.++++|.+|+|||+|+|++++..+ ..++..++|+ +....+ ... +.++.+|||||+.+.. ..+...+....
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~-- 86 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA-- 86 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH--
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH--
Confidence 4699999999999999999999854 3344455554 333332 223 5678999999973210 11111110000
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH-HHhhhhccCCceEEEecCChhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH-LNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~-l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
..++ ..+|+++.|++.. ..++..+... +..+.. ...|+++|+||+|.
T Consensus 87 --~~~l-----------------~~aD~il~VvD~~----------~~~~~~~~~~~~~~l~~-~~~pvilV~NK~Dl-- 134 (308)
T 3iev_A 87 --KQSL-----------------EEADVILFMIDAT----------EGWRPRDEEIYQNFIKP-LNKPVIVVINKIDK-- 134 (308)
T ss_dssp --HHHH-----------------HHCSEEEEEEETT----------TBSCHHHHHHHHHHTGG-GCCCEEEEEECGGG--
T ss_pred --HHHh-----------------hcCCEEEEEEeCC----------CCCCchhHHHHHHHHHh-cCCCEEEEEECccC--
Confidence 0000 0012222111110 1234445554 444433 57999999999954
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
........+.+.++.+...+..+++++||++|.|+.+|.+.....
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKY 179 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHh
Confidence 311333444444444433235789999999999998886655443
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-11 Score=115.24 Aligned_cols=163 Identities=17% Similarity=0.081 Sum_probs=87.5
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccc---cc---ccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQ---GL---GNA 164 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~---~~---~~~ 164 (561)
...+.+|+++|.+|||||||+|+|++.. ..+++.+|+|...... .....+.++||||+........ .+ ...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF-EVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE-EEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE-EecCCEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 3456789999999999999999999876 4567788888753221 1123688999999864211100 00 112
Q ss_pred cccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 165 FLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 165 ~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
++...+.+|.+++|+|.+.... ... ..+...+.....+ +.||+|........ ........+....
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~--------~~~---~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~-~~~~~~~~~~~~~ 169 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLK--------DLD---QQMIEWAVDSNIAVLVLLTKADKLASGARK-AQLNMVREAVLAF 169 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCC--------HHH---HHHHHHHHHTTCCEEEEEECGGGSCHHHHH-HHHHHHHHHHGGG
T ss_pred HHHhhhcccEEEEEEECCCCCc--------hhH---HHHHHHHHHcCCCeEEEEecccCCCchhHH-HHHHHHHHHHHhc
Confidence 2333467899999998753210 000 0122223222222 68999987321000 0011222222222
Q ss_pred C-CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 G-TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~-~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
. ....+++||+++.|...++++|.+..
T Consensus 170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 2 23568999999999999999998763
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-11 Score=110.36 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=87.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.... .++.+..-....+.. ....+.+|||||.++ +..+...+.+....++
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-FRAVTRSYYRGAAGAL 92 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCEEEEEEEETTEEEEEEEEECTTGGG-TCHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCeEEEEEEEECCCChH-hhhhHHHHhccCCEEE
Confidence 468999999999999999999988654322 222222111111222 224688999999543 3333333333222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+......+..++.. +..... ...|+++|+||+|. ...
T Consensus 93 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piilv~nK~Dl--~~~ 135 (179)
T 1z0f_A 93 MVY----------------DITRRSTYNHLSSWLTD------------------ARNLTN-PNTVIILIGNKADL--EAQ 135 (179)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--GGG
T ss_pred EEE----------------eCcCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECccc--ccc
Confidence 111 11112222222222211 222211 46899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+++++++... +.+++++||+++.|+.++.+..
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 136 RDVTYEEAKQFAEEN--GLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 333445666666654 6789999999999988775443
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-11 Score=111.22 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=87.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.... .++.+. .. ..+... ...+.+|||||.++ +..+...+.+....+
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~t~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDY-DPTIED--SYTKICSVDGIPARLDILDTAGQEE-FGAMREQYMRAGHGF 84 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCSSC-CTTCCE--EEEEEEEETTEEEEEEEEECCCTTT-TSCCHHHHHHHCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCcccc-CCCcCc--eEEEEEEECCEEEEEEEEECCCchh-hHHHHHHHHhhCCEE
Confidence 468999999999999999999988543322 221111 11 112222 23678999999532 222222222111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+.+.+..+..++.. ++.... ....|+++|+||+|. ..
T Consensus 85 i~v~----------------d~~~~~s~~~~~~~~~~-----------------~~~~~~-~~~~piilv~nK~Dl--~~ 128 (181)
T 2fn4_A 85 LLVF----------------AINDRQSFNEVGKLFTQ-----------------ILRVKD-RDDFPVVLVGNKADL--ES 128 (181)
T ss_dssp EEEE----------------ETTCHHHHHHHHHHHHH-----------------HHHHHT-SSCCCEEEEEECGGG--GG
T ss_pred EEEE----------------eCCCHHHHHHHHHHHHH-----------------HHHhcC-CCCCCEEEEEECccc--cc
Confidence 1111 11222333323222221 111111 247899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+...++.... +.+++++||++|.|+.++.+.....+.
T Consensus 129 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 129 QRQVPRSEASAFGASH--HVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 2222334455555444 678999999999999888666555443
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-11 Score=114.13 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=91.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+++ |. +.. ..+...+ ..+.+|||||.+ .+..+...+.+....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI-GV-DFMIKTVEINGEKVKLQIWDTAGQE-RFRSITQSYYRSANA 101 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC-SE-EEEEEEEEETTEEEEEEEEEECCSG-GGHHHHGGGSTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc-ce-eEEEEEEEECCEEEEEEEEECCCcH-HHHHHHHHHHhcCCE
Confidence 34689999999999999999999886654433322 11 111 1122222 368899999953 344443333322222
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
++..+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. .
T Consensus 102 ~i~v~----------------D~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piilv~NK~Dl--~ 144 (201)
T 2ew1_A 102 LILTY----------------DITCEESFRCLPEWLRE------------------IEQYAS-NKVITVLVGNKIDL--A 144 (201)
T ss_dssp EEEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECGGG--G
T ss_pred EEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcC-CCCCEEEEEECCCC--c
Confidence 21111 11222333222222221 222211 36899999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
.......+.+.+++... +.+++++||++|.|+.++.+.......+.
T Consensus 145 ~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 145 ERREVSQQRAEEFSEAQ--DMYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp GGCSSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 32222344455555443 57899999999999988876665554443
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.8e-11 Score=127.39 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=89.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-C------------------------------cccCCCcccccCcccc--ccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-A------------------------------AAENFPFCTIDPNENN--KVPA 141 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~------------------------------~~~~~~~~T~~~~~~~--~~~~ 141 (561)
..++|+++|.+|+|||||+|+|++.. . .....+|+|.+..... ....
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 44799999999999999999996532 1 0112357777654432 2245
Q ss_pred eEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhcc
Q psy17315 142 FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAK 217 (561)
Q Consensus 142 ~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK 217 (561)
.+.++||||.... .......++.+|++++|+|++.......-.......+.+. .+..+..+ ++||
T Consensus 96 ~~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~----~~~~~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM----LAKTAGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHH----HHHHcCCCeEEEEeec
Confidence 7999999997532 2234556788999999999864211000000001111111 11222222 8999
Q ss_pred ccccCcCCCCC---ccHHHHHHHhhhcC-----CCcEEEEEccCCCCHHHHHH
Q psy17315 218 ADSKKKMGPKK---TDEGEKKMLLGRVG-----TNLKVGIVGVPNVGKSTFFN 262 (561)
Q Consensus 218 ~D~~~~~~~~~---~~~~~l~~l~~~~~-----~~~~i~isg~~~~Gks~l~~ 262 (561)
+|+........ ....++..+..... ..+.+.+||++|.|+..+..
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99863211000 11122233332222 34689999999999988543
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-11 Score=114.32 Aligned_cols=158 Identities=14% Similarity=0.072 Sum_probs=85.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.. .+.++.+..- ...+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~-- 81 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFVD-SYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE-YSIFPQTYSIDINGY-- 81 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCT-TCCCCGGGTTTCSEE--
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCCccccE-EEEEEECCEEEEEEEEeCCCchh-hhHHHHHHHhcCCEE--
Confidence 579999999999999999999775432 2333223221 11122222 4578999999532 111111111111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++- .+.+.+.+..+..++.. +.........|+++|+||+|. ....
T Consensus 82 ------------i~v~--d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ilv~nK~Dl--~~~~ 127 (181)
T 3t5g_A 82 ------------ILVY--SVTSIKSFEVIKVIHGK------------------LLDMVGKVQIPIMLVGNKKDL--HMER 127 (181)
T ss_dssp ------------EEEE--ETTCHHHHHHHHHHHHH------------------HHHHC----CCEEEEEECTTC--TTTC
T ss_pred ------------EEEE--ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--hhcc
Confidence 1111 12222333333333221 111111247899999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+.+.++++.. +.+++++||+++.|+.++.+...+.
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 166 (181)
T 3t5g_A 128 VISYEEGKALAESW--NAAFLESSAKENQTAVDVFRRIILE 166 (181)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHHHH
Confidence 33455666666655 6789999999999998876554443
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=121.93 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=89.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCcccc-----------------------c--cCCeEEEE
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENN-----------------------K--VPAFLNVV 146 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~-----------------------~--~~~~i~l~ 146 (561)
..++|+++|.+|+|||||+|+|++.. ......+|.|.+..... . ....+.++
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45799999999999999999999764 22223467776542110 0 01468999
Q ss_pred eCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccccccC
Q psy17315 147 DIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKADSKK 222 (561)
Q Consensus 147 DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~D~~~ 222 (561)
||||... +...+...+..+|++++|+|++... +.....+.+..+ ..+.. + ++||+|+..
T Consensus 87 DtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~------~~~qt~e~l~~~----~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 87 DSPGHET-------LMATMLSGASLMDGAILVIAANEPC------PQPQTKEHLMAL----EILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp ECSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCS------SCHHHHHHHHHH----HHTTCCCEEEEEECTTSSC
T ss_pred ECCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCC------CCchhHHHHHHH----HHcCCCeEEEEEEccCCCC
Confidence 9999642 2223455567899999999886311 011122222221 22222 2 899999986
Q ss_pred cCCCCCccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 223 KMGPKKTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 223 ~~~~~~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...... ...++..+.... ...+.+.+||++|.|+..|+++|.+..
T Consensus 150 ~~~~~~-~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 150 EKQAEE-NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTTTTT-HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHH-HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 443211 223333433321 345789999999999999999998864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-11 Score=116.61 Aligned_cols=163 Identities=14% Similarity=0.077 Sum_probs=86.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccc-cccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVN-PVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~d-p~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
...+|.+.|.+|+|||+|++.+.+..+..... ++.+... ....+......+.+|||||.++ +..+...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~---- 96 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD-PTVENTYSKIVTLGKDEFHLHLVDTAGQDE-YSILPYSFIIGV---- 96 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-CCSEEEEEEEEC----CEEEEEEEECCCCT-TCCCCGGGTTTC----
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC-CccceEEEEEEEECCEEEEEEEEECCCccc-hHHHHHHHHhcC----
Confidence 45689999999999999999999986553322 2222111 1111222234578999999432 111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
|...++- .+.+.+.+..+..++.. +........+|+++|+||+|. ...
T Consensus 97 ----------d~~i~v~--d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 144 (201)
T 3oes_A 97 ----------HGYVLVY--SVTSLHSFQVIESLYQK------------------LHEGHGKTRVPVVLVGNKADL--SPE 144 (201)
T ss_dssp ----------CEEEEEE--ETTCHHHHHHHHHHHHH------------------HHC-----CCCEEEEEECTTC--GGG
T ss_pred ----------CEEEEEE--eCCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccC--ccc
Confidence 1111111 12222333333333222 111111136899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.........++.... +.+++++||++|.|++++.+...+.+.
T Consensus 145 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 145 REVQAVEGKKLAESW--GATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333334455555544 678999999999999888766655443
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-12 Score=133.85 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=75.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+...+|.+.|.+|+|||+|+|.+++.. ...++..+||+ |... .+...+..+.+|||||+++.-+.++....+....
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~--~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQE--RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC--------------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 456789999999999999999999873 33445555664 4432 2344556799999999865322222221111111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCH----HHHHHHHhhhhccCCceEEEecCCh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSN----ADIEHLNKLNLLTAKTQIYLVNLSA 395 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~----~e~~~l~~~~~l~~kP~iiv~NK~D 395 (561)
.+..+|+++.|++... ..+. .+..++..+ ..+|+++|+||+|
T Consensus 309 ---------------------~~~~aD~vl~VvD~s~----------~~s~~~~~~~~~~l~~l---~~~piIvV~NK~D 354 (476)
T 3gee_A 309 ---------------------KMAEADLILYLLDLGT----------ERLDDELTEIRELKAAH---PAAKFLTVANKLD 354 (476)
T ss_dssp ---------------------CCSSCSEEEEEEETTT----------CSSGGGHHHHHHHHHHC---TTSEEEEEEECTT
T ss_pred ---------------------hcccCCEEEEEEECCC----------CcchhhhHHHHHHHHhc---CCCCEEEEEECcC
Confidence 1122244333332111 1122 333444433 3799999999995
Q ss_pred hhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 396 KDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 396 ~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
. ..... .. .+++.+.. ..+++++||++|.|+++|.+...+.+.
T Consensus 355 l--~~~~~--~~-~~~l~~~~--~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 355 R--AANAD--AL-IRAIADGT--GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp S--CTTTH--HH-HHHHHHHH--TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred C--CCccc--hh-HHHHHhcC--CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 4 32111 11 12222211 357999999999999998776655443
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-11 Score=113.29 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=86.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ +.. ....+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTI-EDS-YLKHTEIDNQWAILDVLDTAGQEE-FSAMREQYMRTGDGFL 94 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC-CEE-EEEEEEETTEEEEEEEEECCSCGG-GCSSHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cce-eEEEEEeCCcEEEEEEEECCCchh-hHHHHHHHHhcCCEEE
Confidence 4679999999999999999999875443332221 111 111112222 3466799999532 2222222222221111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..++.. +.........|+++|+||+|. ...
T Consensus 95 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ilv~nK~Dl--~~~ 138 (183)
T 3kkq_A 95 IVY----------------SVTDKASFEHVDRFHQL------------------ILRVKDRESFPMILVANKVDL--MHL 138 (183)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHHTSSCCCEEEEEECTTC--STT
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEECCCc--hhc
Confidence 111 12222333322222221 211122247899999999954 322
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechh-hhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGV-FEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~-~~~gl~~L~~~~~~ 442 (561)
.....+.+.+++... +.+++++||+ ++.|++++.+...+
T Consensus 139 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~~v~~l~~~l~~ 178 (183)
T 3kkq_A 139 RKVTRDQGKEMATKY--NIPYIETSAKDPPLNVDKTFHDLVR 178 (183)
T ss_dssp CCSCHHHHHHHHHHH--TCCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHh--CCeEEEeccCCCCCCHHHHHHHHHH
Confidence 333445555665554 5789999999 99999887655443
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-11 Score=112.79 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=88.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+. .++. -...+ ......+.+|||||.++ ..+...+.+....+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~d~i 102 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT-LEST-YRHQATIDDEVVSMEILDTAGQED--TIQREGHMRWGEGF 102 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT-CCEE-EEEEEEETTEEEEEEEEECCCCCC--CHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCC-CCce-EEEEEEECCEEEEEEEEECCCCCc--ccchhhhhccCCEE
Confidence 3468999999999999999999998654332222 2221 11112 12234588999999644 22222222222221
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++. .+.........|+++|+||+|. ..
T Consensus 103 ilv~----------------D~~~~~s~~~~~~~~~------------------~i~~~~~~~~~piilv~NK~Dl--~~ 146 (196)
T 2atv_A 103 VLVY----------------DITDRGSFEEVLPLKN------------------ILDEIKKPKNVTLILVGNKADL--DH 146 (196)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHH------------------HHHHHHTTSCCCEEEEEECGGG--GG
T ss_pred EEEE----------------ECcCHHHHHHHHHHHH------------------HHHHhhCCCCCcEEEEEECccc--cc
Confidence 1111 1222233322222221 1222222247899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhh-hhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEH-QLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~-gl~~L~~~~~~~~ 444 (561)
......++..+++... +.+++++||+++. |+.++.+...+.+
T Consensus 147 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 147 SRQVSTEEGEKLATEL--ACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp GCCSCHHHHHHHHHHH--TSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHh--CCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 2233344555555544 6789999999999 9988766554443
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=114.68 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccc--c
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH--I 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--i 169 (561)
..++|+++|.+|||||||+|+|++.. ..+++++++|....... ..+..+.+|||||+.............+... .
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 45899999999999999999999988 57888899988765542 2345799999999976543211111111111 1
Q ss_pred ccCCEEEEEeccc
Q psy17315 170 SACDAIFHLCKEK 182 (561)
Q Consensus 170 ~~~D~il~VvD~~ 182 (561)
..+|++++|+|..
T Consensus 115 ~~~~~il~V~~~d 127 (262)
T 3def_A 115 RTIDVLLYVDRLD 127 (262)
T ss_dssp CEECEEEEEEESS
T ss_pred CCCCEEEEEEcCC
Confidence 3789999997543
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-11 Score=129.88 Aligned_cols=155 Identities=17% Similarity=0.055 Sum_probs=87.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-------------------------------CcccCCCcccccCcccc--ccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-------------------------------AAAENFPFCTIDPNENN--KVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-------------------------------~~~~~~~~~T~~~~~~~--~~~ 140 (561)
...++|+++|.+|+|||||+|+|++.. ......+|+|.+..... ...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 455899999999999999999997551 11223457777654432 234
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
..+.++||||... +.......++.+|++++|+|++...... ......+.......+..+... ++|
T Consensus 111 ~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~----~~~~~~qt~e~~~~~~~~~~~~iIvviN 179 (483)
T 3p26_A 111 ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFES----GFDLDGQTKEHMLLASSLGIHNLIIAMN 179 (483)
T ss_dssp CEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred ceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCcccc----ccchhhhHHHHHHHHHHcCCCcEEEEEE
Confidence 5799999999843 2234456678999999999986422110 000000111111122223322 899
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~ 259 (561)
|+|+.+..... ......+..+..... ..+.+.+||++|.|+..
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99998421100 001112222222222 34679999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-11 Score=109.58 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=83.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+....+.++.+. +... .+... ...+.+|||||.++ +..+...+.+....+
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI-DFRNKVLDVDGVKVKLQMWDTAGQER-FRSVTHAYYRDAHAL 87 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSC-EEEEEEEEETTEEEEEEEEECCCC---------CCGGGCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceee-EEEEEEEEECCEEEEEEEEeCCCcHH-HHHHHHHHccCCCEE
Confidence 3579999999999999999999986643333222221 1111 11122 23688999999543 333332222211111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+...+..+..++. .+..... ...|+++|+||+|. ..
T Consensus 88 i~v~----------------d~~~~~s~~~~~~~~~------------------~i~~~~~-~~~piilv~nK~Dl--~~ 130 (180)
T 2g6b_A 88 LLLY----------------DVTNKASFDNIQAWLT------------------EIHEYAQ-HDVALMLLGNKVDS--AH 130 (180)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHH------------------HHHHHSC-TTCEEEEEEECCST--TS
T ss_pred EEEE----------------ECCCHHHHHHHHHHHH------------------HHHHhCC-CCCcEEEEEECccc--Cc
Confidence 1111 1111122222222211 1222211 46899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+...+++... +.+++++||+++.|++++.+...+
T Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 131 ERVVKREDGEKLAKEY--GLPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp CCCSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 2222344455555444 578999999999999887555443
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-11 Score=109.48 Aligned_cols=156 Identities=14% Similarity=0.214 Sum_probs=83.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+..++.....+......+.+|||||.++ +..+...+.+....++..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~~~~i~v~ 82 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ-FPAMQRLSISKGHAFILVY 82 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS-CHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchh-hHHHHHHhcccCCEEEEEE
Confidence 579999999999999999999876654444433322211111122224688999999543 2333333222222111111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh-hccCCceEEEecCChhhhhhhcc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN-LLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~-~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
.+.+...+..+..++ ..+.... .....|+++|+||+|. .....
T Consensus 83 ----------------d~~~~~~~~~~~~~~------------------~~i~~~~~~~~~~pii~v~nK~Dl--~~~~~ 126 (172)
T 2erx_A 83 ----------------SITSRQSLEELKPIY------------------EQICEIKGDVESIPIMLVGNKCDE--SPSRE 126 (172)
T ss_dssp ----------------ETTCHHHHHTTHHHH------------------HHHHHHHC---CCCEEEEEECGGG--GGGCC
T ss_pred ----------------ECcCHHHHHHHHHHH------------------HHHHHHhCCCCCCCEEEEEEcccc--ccccc
Confidence 111112211111111 1121111 1136899999999954 33222
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.......++.... +.+++++||++|.|++++.+.
T Consensus 127 v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 127 VQSSEAEALARTW--KCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp SCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHH
T ss_pred cCHHHHHHHHHHh--CCeEEEecCCCCcCHHHHHHH
Confidence 2233344444443 578999999999998777443
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.3e-11 Score=111.27 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=91.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |..-....+. .....+.+|||||.++ +..+...+.+....++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV-GIDFKVKTIYRNDKRIKLQIWDTAGLER-YRTITTAYYRGAMGFI 85 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC-SEEEEEEEEEETTEEEEEEEEEECCSGG-GHHHHHTTGGGCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc-ceeEEEEEEEECCeEEEEEEEECCCchh-hcchHHHhhcCCCEEE
Confidence 3679999999999999999999986654433332 3211111121 1234688999999643 3333333332222211
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. ...
T Consensus 86 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piilv~nK~Dl--~~~ 128 (203)
T 1zbd_A 86 LMY----------------DITNEESFNAVQDWSTQ------------------IKTYS-WDNAQVLLVGNKCDM--EDE 128 (203)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CSSCEEEEEEECTTC--TTS
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECccc--Ccc
Confidence 111 11222333333232221 21111 147899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+.+.+++... +.+++++||++|.|+.++.+.....+.
T Consensus 129 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 129 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 223344555555544 578999999999999888666554433
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=108.65 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=88.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH---------HHHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI---------EKEINKIEKLVQ 314 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi---------~~~~~~l~~~~~ 314 (561)
..+|.+.|.+|+|||+|++.+.+.. ...+.+++|++... .....+.++.+|||||+ +..+..+...+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~t~~~-~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK--IAFVSKTPGKTRSI-NFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC--CSCCCSSCCCCCCE-EEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc--cccccCCCCCccCe-EEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4689999999999999999999885 33444444544111 11223457889999994 333444333332
Q ss_pred hCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCC
Q psy17315 315 RGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLS 394 (561)
Q Consensus 315 ~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~ 394 (561)
+..... +++..|. + . .......+...+..+.. ...|+++|+||+
T Consensus 100 ~~~~~~-------------------------~~vi~v~----d--~----~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~ 143 (195)
T 3pqc_A 100 KNRWSL-------------------------QMVFLLV----D--G----RIPPQDSDLMMVEWMKS-LNIPFTIVLTKM 143 (195)
T ss_dssp HHCTTE-------------------------EEEEEEE----E--T----TSCCCHHHHHHHHHHHH-TTCCEEEEEECG
T ss_pred hcCcCc-------------------------eEEEEEe----c--C----CCCCCHHHHHHHHHHHH-cCCCEEEEEECh
Confidence 222110 0000000 0 0 01122333333333322 479999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
|...........+.+.+.+... ...+++++||++|.|+.++.+..
T Consensus 144 Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 144 DKVKMSERAKKLEEHRKVFSKY-GEYTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp GGSCGGGHHHHHHHHHHHHHSS-CCSCEEECCTTTCTTHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHhhc-CCCceEEEecCCCCCHHHHHHHH
Confidence 5421111223344555555542 24689999999999988875543
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-11 Score=128.11 Aligned_cols=155 Identities=11% Similarity=0.100 Sum_probs=96.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++++|+++|.+|+|||||+++|++.....+..+|+|.+..... ..+..+.||||||...... .....++.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-------~~~~~~~~a 75 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-------MRARGAQAT 75 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-------SBCSSSBSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-------HHHHHHhhC
Confidence 4578999999999999999999986654555678887654321 2235789999999754332 223456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCC-ccHHHHHHHhhhc-CCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKK-TDEGEKKMLLGRV-GTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~-~~~~~l~~l~~~~-~~~~~i 247 (561)
|++++|+|++.... ....+.+. .+.....+ +.||+|+........ ........+.... ...+.+
T Consensus 76 D~aILVVda~~g~~-------~qT~e~l~----~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 76 DIVVLVVAADDGVM-------PQTIEAIQ----HAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFV 144 (501)
T ss_dssp SSEEEEEETTTBSC-------TTTHHHHH----HHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEE
T ss_pred CEEEEEeecccCcc-------HHHHHHHH----HHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEE
Confidence 99999998763210 11111111 12222233 899999975321100 0000000000111 124689
Q ss_pred EEEccCCCCHHHHHHHHHhh
Q psy17315 248 GIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~ 267 (561)
.+||++|.|+..|++++...
T Consensus 145 ~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 145 HVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp ECCTTTCTTCTTHHHHTTTT
T ss_pred EEeeeeccCcchhhhhhhhh
Confidence 99999999999999999764
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=110.61 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=89.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc-ccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP-VRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp-~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+||++|++.+.+..+.....+.+ | .+. ...+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI-G-VDFTMKTLEIQGKRVKLQIWDTAGQER-FRTITQSYYRSANGA 105 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGG-GHHHHHHHHTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCc-c-eEEEEEEEEECCEEEEEEEEECCCcHh-HHHHHHHHHhhCCEE
Confidence 4679999999999999999999886543322221 1 111 11222222 4688999999543 444444444333322
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. ..
T Consensus 106 ilv~----------------D~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piilv~NK~Dl--~~ 148 (201)
T 2hup_A 106 ILAY----------------DITKRSSFLSVPHWIED------------------VRKYA-GSNIVQLLIGNKSDL--SE 148 (201)
T ss_dssp EEEE----------------ETTBHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTC--GG
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECCcc--cc
Confidence 2211 12222333333232221 22111 146899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+++.+++... +. +++++||+++.|++++.+.....+.
T Consensus 149 ~~~v~~~~~~~~~~~~--~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 149 LREVSLAEAQSLAEHY--DILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp GCCSCHHHHHHHHHHT--TCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233345666666554 55 8999999999999888665554443
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.7e-11 Score=111.42 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=91.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ +. +.. ..+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI-GV-DFKIRTIELDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGI 92 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCS-SE-EEEEEEEEETTEEEEEEEEEECCSGG-GCTTHHHHHTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc-cc-eEEEEEEEECCEEEEEEEEECCCcHh-hhhhHHHHHhhCCEE
Confidence 3579999999999999999999886554443332 21 111 1222222 4688999999532 322222322222211
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ..
T Consensus 93 i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~p~ilv~nK~Dl--~~ 135 (196)
T 3tkl_A 93 IVVY----------------DVTDQESFNNVKQWLQE------------------IDRYAS-ENVNKLLVGNKCDL--TT 135 (196)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--TT
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCCEEEEEECccc--cc
Confidence 1111 11222222222222211 222221 36899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
......+...++.... +.+++++||++|.|+.++.+...+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 136 KKVVDYTTAKEFADSL--GIPFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TCCSCHHHHHHHHHHT--TCCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2333344555555554 67899999999999988866665554443
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=108.85 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=82.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+..... .+.+. .. ..+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIED--SYRKQVVIDGETCLLDILDTAGQEE-YSAMRDQYMRTGEGFL 97 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCCC-TTCCE--EEEEEEEETTEEEEEEEEECCC------------CTTCSEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccccC-Cccce--EEEEEEEECCEEEEEEEEECCChHH-HHHHHHHhhCcCCEEE
Confidence 579999999999999999999876443222 21111 11 1122222 3588999999543 3333333322222211
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+...+..+..++.. +.........|+++|+||+|. ..
T Consensus 98 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~p~ilv~nK~Dl--~~- 140 (190)
T 3con_A 98 CVF----------------AINNSKSFADINLYREQ------------------IKRVKDSDDVPMVLVGNKCDL--PT- 140 (190)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHHTCSCCCEEEEEECTTC--SC-
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHHhCCCCCeEEEEEECCcC--Cc-
Confidence 111 11222222222222211 222221236899999999954 22
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+.+.++++.. +.+++++||+++.|+.++.+...+.+
T Consensus 141 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 141 RTVDTKQAHELAKSY--GIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CCSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 223344555555554 56899999999999988766554443
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.7e-11 Score=124.75 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=95.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCcccc--c-----------------------cCCeEEEE
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENN--K-----------------------VPAFLNVV 146 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~--~-----------------------~~~~i~l~ 146 (561)
..++|+++|.+|+|||||+|+|++.. ......+|.|.+..... . ....+.++
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34789999999999999999999764 22233467776543110 0 01468999
Q ss_pred eCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccccccC
Q psy17315 147 DIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKADSKK 222 (561)
Q Consensus 147 DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~D~~~ 222 (561)
||||... +...+...+..+|++++|+|++... +.....+.+..+ ..+.. + +.||+|+..
T Consensus 89 DtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~------~~~qt~e~l~~~----~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 89 DAPGHEA-------LMTTMLAGASLMDGAILVIAANEPC------PRPQTREHLMAL----QIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp ECSSHHH-------HHHHHHHCGGGCSEEEEEEETTSCS------SCHHHHHHHHHH----HHHTCCCEEEEEECGGGSC
T ss_pred ECCChHH-------HHHHHHhhhhhCCEEEEEEECCCCC------CChhHHHHHHHH----HHcCCCcEEEEEECccCCC
Confidence 9999642 2223455667899999999886310 011222333222 22222 2 799999974
Q ss_pred cCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 223 KMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 223 ~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..... ....++..+... ....+.+.+||++|.|+..|+++|.+..
T Consensus 152 ~~~~~-~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 152 KEKAL-ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHH-HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHH-HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 32100 011122222222 1345789999999999999999998864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.5e-11 Score=107.09 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=84.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..+.....+. .|..-....+ ......+.+|||||.++ +..+...+.+....++.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQEST-IGAAFLTQTVCLDDTTVKFEIWDTAGQER-YHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-SSEEEEEEEEEETTEEEEEEEEEECCSGG-GGGGHHHHHTTCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceEEEEEEEEECCEEEEEEEEeCCCcHH-hhhhhHHhccCCCEEEE
Confidence 57999999999999999999987654332222 2221111112 12234688999999543 33332232222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ....
T Consensus 85 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~~iilv~nK~Dl--~~~~ 127 (170)
T 1r2q_A 85 VY----------------DITNEESFARAKNWVKE------------------LQRQAS-PNIVIALSGNKADL--ANKR 127 (170)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHSC-TTCEEEEEEECGGG--GGGC
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECccC--cccc
Confidence 11 11222222222222221 111111 36899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+++.+++... +.+++++||++|.|++++.+.
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 128 AVDFQEAQSYADDN--SLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHH
Confidence 33345555665554 678999999999998777443
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-11 Score=112.82 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=88.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+++..+.....+.++ .+... .+.+. ...+.+|||+|..+....+...+.+....+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP--EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSC--TTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcc--cceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 46899999999999999999986543322222221 11111 12222 245788999996432222333333222222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..|+.+ +.........|+++|+||+|. ..
T Consensus 101 ilv~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~ 144 (195)
T 3cbq_A 101 LIVF----------------SVTDRRSFSKVPETLLR------------------LRAGRPHHDLPVILVGNKSDL--AR 144 (195)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSTTSCCCEEEEEECTTC--TT
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEeechhc--cc
Confidence 1111 12222333333333221 111111137899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
......++..+++... +.+++++||+++.|++++.+...+.
T Consensus 145 ~~~v~~~~~~~~a~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~ 185 (195)
T 3cbq_A 145 SREVSLEEGRHLAGTL--SCKHIETSAALHHNTRELFEGAVRQ 185 (195)
T ss_dssp TCCSCHHHHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHh--CCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 2233345555565554 5789999999999998886655443
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=111.59 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=94.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh------------hHhhhcccHHHHHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII------------NEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~------------~~el~l~Dt~Gi~~~~~~l 309 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+.+ + .+.. ..+.+. ...+.+|||||.++ +..+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~ 100 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV-G-IDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-FRSL 100 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEE-E-EEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-HHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCce-e-EEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-HHhH
Confidence 34689999999999999999999876543322221 1 1111 111111 34688999999654 4444
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
...+.+....++..+ ++.+.+.+..+..++.. .. .......+|+++
T Consensus 101 ~~~~~~~~d~iilV~----------------D~~~~~s~~~~~~~l~~--i~----------------~~~~~~~~piil 146 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMF----------------DLTSQQSFLNVRNWMSQ--LQ----------------ANAYCENPDIVL 146 (217)
T ss_dssp HHHHHTTCCEEEEEE----------------ETTCHHHHHHHHHHHHT--CC----------------CCCTTTCCEEEE
T ss_pred HHHHhcCCCEEEEEE----------------ECcCHHHHHHHHHHHHH--HH----------------HhcCcCCCCEEE
Confidence 444443332222111 12223334444444433 10 001114689999
Q ss_pred EecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 390 LVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 390 v~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
|+||+|. ........+.+.+++... +.+++++||+++.|+.++.+...+.+.+
T Consensus 147 V~NK~Dl--~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 147 IGNKADL--PDQREVNERQARELADKY--GIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEECTTC--GGGCCSCHHHHHHHHHHT--TCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEECCcc--ccccccCHHHHHHHHHHC--CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999954 332233345566666554 6789999999999998887666554443
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-12 Score=129.77 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=85.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+++.|.+|+|||||+|++++..+ +.++..++|+ +.+..+ ...+.++.+|||||+.+....+...+.... .
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~--~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~----~ 81 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEV----Y 81 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHH----H
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce--eeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHH----H
Confidence 4699999999999999999999854 3344445554 333322 223467899999997531111111110000 0
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhc-cCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLL-TAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l-~~kP~iiv~NK~D~d~~~~ 401 (561)
.+ +..+|+++.|++.. ..++..+..++..+... ..+|+++|+||+|. ..
T Consensus 82 ~~-----------------l~~ad~il~VvD~~----------~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl--~~- 131 (301)
T 1wf3_A 82 EA-----------------LADVNAVVWVVDLR----------HPPTPEDELVARALKPLVGKVPILLVGNKLDA--AK- 131 (301)
T ss_dssp HH-----------------TSSCSEEEEEEETT----------SCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG--CS-
T ss_pred HH-----------------HhcCCEEEEEEECC----------CCCChHHHHHHHHHHhhcCCCCEEEEEECccc--CC-
Confidence 00 01112222222210 01233343333333221 26899999999954 32
Q ss_pred ccc-hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 KNK-WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 ~~~-~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
... ..+.++++ .++.+++++||++|.|+++|.+...
T Consensus 132 ~~~~~~~~~~~~----~~~~~~~~iSA~~g~gv~~l~~~l~ 168 (301)
T 1wf3_A 132 YPEEAMKAYHEL----LPEAEPRMLSALDERQVAELKADLL 168 (301)
T ss_dssp SHHHHHHHHHHT----STTSEEEECCTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHh----cCcCcEEEEeCCCCCCHHHHHHHHH
Confidence 111 22333332 2356899999999999887755543
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=108.39 Aligned_cols=161 Identities=15% Similarity=0.195 Sum_probs=91.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+++ + .+.. ..+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI-G-VEFGSKIINVGGKYVKLQIWDTAGQER-FRSVTRSYYRGAAGA 86 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS-E-EEEEEEEEEETTEEEEEEEEEECCSGG-GHHHHHTTSTTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc-c-eEEEEEEEEECCEEEEEEEEeCCCcHH-HHHHHHHHHhcCCEE
Confidence 3689999999999999999999886554333221 1 1111 1122222 4688999999543 333333332222211
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ..
T Consensus 87 i~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piilv~nK~Dl--~~ 129 (186)
T 2bme_A 87 LLVY----------------DITSRETYNALTNWLTD------------------ARMLAS-QNIVIILCGNKKDL--DA 129 (186)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECGGG--GG
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECccc--cc
Confidence 1111 11222222222222211 222211 46899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
......++..+++... +.+++++||++|.|+.++.+.......+
T Consensus 130 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 130 DREVTFLEASRFAQEN--ELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2233344555555554 6789999999999998886665554443
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=110.00 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=86.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccC-CCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFE-DDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~-~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..+|.+.|.+|+|||+|++++++.... ...+++ .|. +.. ..+.+.+ ..+.+|||+|.......+...+.+....
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~-~g~-d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGE-DTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCT-TEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc-cce-eeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 367999999999999999999864321 122222 121 111 1122222 3467899998654222333333222222
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
.+..+ .+.+.+.+..+..+... +.........|+|+|+||+|. .
T Consensus 115 ~ilVy----------------dvt~~~sf~~~~~~~~~------------------l~~~~~~~~~piilVgNK~DL--~ 158 (211)
T 2g3y_A 115 YLIVY----------------SITDRASFEKASELRIQ------------------LRRARQTEDIPIILVGNKSDL--V 158 (211)
T ss_dssp EEEEE----------------ETTCHHHHHHHHHHHHH------------------HHTSGGGTTSCEEEEEECTTC--G
T ss_pred EEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHHhCCCCCcEEEEEEChHH--h
Confidence 21111 23333444433333221 222111136899999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.......++...++... +.+++++||++|.|++++.+.....+
T Consensus 159 ~~r~v~~~e~~~~a~~~--~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 159 RCREVSVSEGRACAVVF--DCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp GGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCceEeHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22222233333444333 57899999999999988866655443
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.2e-11 Score=107.50 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=83.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |. +.. ..+.. ....+.+|||||.++ +..+...+.+....+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI-GV-DFLERQIQVNDEDVRLMLWDTAGQEE-FDAITKAYYRGAQAC 81 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCC-SS-SEEEEEEEETTEEEEEEEECCTTGGG-TTCCCHHHHTTCCEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce-EE-EEEEEEEEECCEEEEEEEEcCCCcHh-HHHHHHHHhcCCCEE
Confidence 3579999999999999999999876544333221 11 111 11222 224688999999432 211111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +.... ...|+++|+||+|. ..
T Consensus 82 i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~piilv~nK~Dl--~~ 123 (168)
T 1z2a_A 82 VLVF----------------STTDRESFEAISSWREK------------------VVAEV--GDIPTALVQNKIDL--LD 123 (168)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHH--CSCCEEEEEECGGG--GG
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccc--Cc
Confidence 1110 11111222222222111 11111 37899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
......+.+.+++... +.+++++||+++.|++++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 124 DSCIKNEEAEGLAKRL--KLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp GCSSCHHHHHHHHHHH--TCEEEECBTTTTBSSHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHH
Confidence 2233345555665554 67899999999999877754443
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-11 Score=114.38 Aligned_cols=159 Identities=22% Similarity=0.234 Sum_probs=80.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH---------HHHHHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI---------EKEINKIEKLV 313 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi---------~~~~~~l~~~~ 313 (561)
...+|.+.|.+|+|||+|++.+.+..+. ..+...+|++.....+ ..+..+.+|||||+ ++.+..+...+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFY-IINDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEE-EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEE-EECCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 3478999999999999999999987432 2233334443111111 12447899999994 23343333333
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
.+..... +++..|.+ .. ...+..+...+..... ...|+++|+||
T Consensus 100 ~~~~~~~-------------------------~~~i~v~d------~~----~~~~~~~~~~~~~~~~-~~~p~i~v~nK 143 (195)
T 1svi_A 100 ITTREEL-------------------------KAVVQIVD------LR----HAPSNDDVQMYEFLKY-YGIPVIVIATK 143 (195)
T ss_dssp HHHCTTE-------------------------EEEEEEEE------TT----SCCCHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred HhhhhcC-------------------------CEEEEEEE------CC----CCCCHHHHHHHHHHHH-cCCCEEEEEEC
Confidence 2211100 01000000 00 1123333333333222 47899999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
+|...........+++.+.+... .+.+++++||+++.|+.++.+..
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 144 ADKIPKGKWDKHAKVVRQTLNID-PEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHTCC-TTSEEEECCTTTCTTHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHccc-CCCceEEEEccCCCCHHHHHHHH
Confidence 95421111111223444433321 25789999999999988775443
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.3e-11 Score=110.90 Aligned_cols=156 Identities=18% Similarity=0.225 Sum_probs=87.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+... +.++.|..-....+ ......+.+|||||.++ +..+...+.+....++
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHN-ISPTIGASFMTKTVPCGNELHKFLIWDTAGQER-FHSLAPMYYRGSAAAV 100 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTT-CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG-GGGGTHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC-cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh-hHhhhHHhhccCCEEE
Confidence 46899999999999999999998865432 23333332111111 12234688999999532 2222222222221111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. ...
T Consensus 101 lV~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piiiv~NK~Dl--~~~ 143 (192)
T 2fg5_A 101 IVY----------------DITKQDSFYTLKKWVKE------------------LKEHG-PENIVMAIAGNKCDL--SDI 143 (192)
T ss_dssp EEE----------------ETTCTHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEECGGG--GGG
T ss_pred EEE----------------eCCCHHHHHHHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--ccc
Confidence 111 11112222222222221 21111 136899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+++.+++... +.+++++||+++.|++++.+..
T Consensus 144 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 144 REVPLKDAKEYAESI--GAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp CCSCHHHHHHHHHTT--TCEEEECBTTTTBSHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHH
Confidence 333456666766654 6789999999999987775443
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.2e-11 Score=110.36 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+.+ |..-....+ ......+.+|||||.++ +..+...+.+....+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVEFSTRTVMLGTAAVKAQIWDTAGLER-YRAITSAYYRGAVGA 101 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEEEEEEEEEETTEEEEEEEEEESCCCT-TCTTHHHHHTTCCEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-ceeEEEEEEEECCEEEEEEEEeCCCchh-hhhhhHHHhccCCEE
Confidence 34689999999999999999999986543332221 211011111 12234688999999643 222222222222111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+...+..+..++.. +.... ....|+++|+||+|. ..
T Consensus 102 i~v~----------------D~~~~~s~~~~~~~l~~------------------i~~~~-~~~~piilv~nK~Dl--~~ 144 (193)
T 2oil_A 102 LLVF----------------DLTKHQTYAVVERWLKE------------------LYDHA-EATIVVMLVGNKSDL--SQ 144 (193)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHTTS-CTTCEEEEEEECGGG--GG
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhc-CCCCeEEEEEECCCc--cc
Confidence 1111 11111222222222111 11111 136899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......+.+.+++... +.+++++||+++.|+.++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 145 AREVPTEEARMFAENN--GLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2233345555665554 67899999999999988866554443
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.8e-11 Score=110.10 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=84.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |..-....+...+ ..+.+|||+|.++ +..+...+.+....++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV-GVDFKIKTVELRGKKIRLQIWDTAGQER-FNSITSAYYRSAKGII 103 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCT-TEEEEEEEEEETTEEEEEEEEEECCSGG-GHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCcc-ceeEEEEEEEECCeEEEEEEEeCCCcHH-HHHHHHHHhcCCCEEE
Confidence 3579999999999999999999876543333221 2111112222222 4688999999543 3333333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+......+..|+ ..+..... ...|+++|+||+|. ...
T Consensus 104 lV~----------------D~~~~~s~~~~~~~~------------------~~i~~~~~-~~~piilV~NK~Dl--~~~ 146 (192)
T 2il1_A 104 LVY----------------DITKKETFDDLPKWM------------------KMIDKYAS-EDAELLLVGNKLDC--ETD 146 (192)
T ss_dssp EEE----------------ETTCHHHHHTHHHHH------------------HHHHHHSC-TTCEEEEEEECGGG--GGG
T ss_pred EEE----------------ECcCHHHHHHHHHHH------------------HHHHHhcC-CCCcEEEEEECccc--ccc
Confidence 111 111122222221111 11222221 36899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+.+.+++... .+.+++++||++|.|++++.+....
T Consensus 147 ~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 147 REITRQQGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp CCSCHHHHHHHHHTS-TTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhc-CCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 233344555655542 2678999999999999887555443
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=110.12 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=84.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+++.-+.. ...+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFG-SRVVNVGGKTVKLQIWDTAGQER-FRSVTRSYYRGAAGA 101 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEE-EEEEEETTEEEEEEEECCTTHHH-HSCCCHHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeE-EEEEEECCeeeEEEEEcCCCcHh-HHHHHHHHhccCCEE
Confidence 3468999999999999999999987654433332211110 11122222 4688999999643 222222222222111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ..
T Consensus 102 i~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piilv~nK~Dl--~~ 144 (200)
T 2o52_A 102 LLVY----------------DITSRETYNSLAAWLTD------------------ARTLAS-PNIVVILCGNKKDL--DP 144 (200)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHTC-TTCEEEEEEECGGG--GG
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECCCc--cc
Confidence 1111 11222222222222221 111111 37899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
.......+..+++... +.+++++||++|.|+.++.+...+...+
T Consensus 145 ~~~v~~~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 145 EREVTFLEASRFAQEN--ELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2233344555555554 6789999999999998886665554433
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.1e-11 Score=111.48 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=86.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.. |..-....+. .....+.+|||||.++ +..+...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~----- 94 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV-GIDFKVKTVYRHDKRIKLQIWDTAGQER-YRTITTAYYRG----- 94 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC-CCEEEEEEEEETTEEEEEEEEECCSCCS-SCCSGGGGGTT-----
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce-eEEEEEEEEEECCeEEEEEEEeCCCcHH-HhhhHHHhccC-----
Confidence 3689999999999999999999986654433332 2211111111 1234688999999421 11111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
+|...++- ++.+.+.+..+..++. .+.... ....|+++|+||+|. ...
T Consensus 95 ---------~d~ii~v~--d~~~~~s~~~~~~~~~------------------~i~~~~-~~~~piilv~nK~Dl--~~~ 142 (189)
T 2gf9_A 95 ---------AMGFLLMY--DIANQESFAAVQDWAT------------------QIKTYS-WDNAQVILVGNKCDL--EDE 142 (189)
T ss_dssp ---------CSEEEEEE--ETTCHHHHHTHHHHHH------------------HHHHHS-CTTCEEEEEEECTTC--GGG
T ss_pred ---------CCEEEEEE--ECCCHHHHHHHHHHHH------------------HHHHhc-CCCCCEEEEEECccc--ccc
Confidence 11111111 1111122222222211 122111 137899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+.++++++.. +.+++++||++|.|++++.+...+..
T Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 143 RVVPAEDGRRLADDL--GFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 233344555555554 57899999999999988866554443
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.9e-11 Score=106.78 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=84.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+... +.++.|..-....+ ......+.+|||||.++ +..+...+.+....++.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPN-INPTIGASFMTKTVQYQNELHKFLIWDTAGLER-FRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTT-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-GGGGTHHHHTTCSEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCceeEEEEEEEEEECCeEEEEEEEcCCCchh-hhcccHhhCcCCCEEEE
Confidence 5799999999999999999999865433 22333332111112 22234688999999643 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+......+..++.. +.... ....|+++|+||+|. ....
T Consensus 85 v~----------------d~~~~~s~~~~~~~~~~------------------l~~~~-~~~~~iilv~nK~Dl--~~~~ 127 (170)
T 1z0j_A 85 VY----------------DITKEETFSTLKNWVRE------------------LRQHG-PPSIVVAIAGNKCDL--TDVR 127 (170)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CTTSEEEEEEECTTC--GGGC
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhC-CCCCcEEEEEECCcc--cccc
Confidence 11 11222222222222211 22221 146899999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+...+++... +.+++++||+++.|++++.+.
T Consensus 128 ~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 128 EVMERDAKDYADSI--HAIFVETSAKNAININELFIE 162 (170)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCEEEEEeCCCCcCHHHHHHH
Confidence 33344555555554 678999999999998777444
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-11 Score=109.71 Aligned_cols=160 Identities=19% Similarity=0.251 Sum_probs=85.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+++ + .+.. ..+...+ ..+.+|||||.++ +..+...+.+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~--- 82 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-G-VDFKIRTVEINGEKVKLQIWDTAGQER-FRTITSTYYRGT--- 82 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTB-S-EEEEEEEEEETTEEEEEEEEEETTGGG-CSSCCGGGGTTC---
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCc-e-eEEEEEEEEECCEEEEEEEEcCCCchh-hhhhHHHHhccC---
Confidence 3679999999999999999999876553333322 1 1111 1222222 4688999999422 111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
|...++- ++.+.+.+..+..++.. +... ....|+++|+||+|. ..
T Consensus 83 -----------d~~i~v~--d~~~~~s~~~~~~~~~~------------------~~~~--~~~~p~ilv~nK~Dl--~~ 127 (181)
T 3tw8_B 83 -----------HGVIVVY--DVTSAESFVNVKRWLHE------------------INQN--CDDVCRILVGNKNDD--PE 127 (181)
T ss_dssp -----------SEEEEEE--ETTCHHHHHHHHHHHHH------------------HHHH--CTTSEEEEEEECTTC--GG
T ss_pred -----------CEEEEEE--ECCCHHHHHHHHHHHHH------------------HHHh--CCCCCEEEEEECCCC--ch
Confidence 1111111 11222333322222221 1111 136899999999953 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
......+...++.... +.+++++||++|.|+.++.+...+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 128 RKVVETEDAYKFAGQM--GIQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp GCCSCHHHHHHHHHHH--TCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2223334445555444 5789999999999999887666554433
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-10 Score=114.46 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=61.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccc--cc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLS--HI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~--~i 169 (561)
..++|+++|.+|+|||||+|+|++.. ..+++.+++|.+..... ..+..+.+|||||+.............+.. ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 35799999999999999999999988 57788899987765432 234479999999997543211111111111 13
Q ss_pred ccCCEEEEEeccc
Q psy17315 170 SACDAIFHLCKEK 182 (561)
Q Consensus 170 ~~~D~il~VvD~~ 182 (561)
+.+|++++|+|.+
T Consensus 118 ~~~d~il~v~~~d 130 (270)
T 1h65_A 118 KTIDVLLYVDRLD 130 (270)
T ss_dssp CEECEEEEEEESS
T ss_pred CCCCEEEEEEeCC
Confidence 5789999998653
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-11 Score=133.51 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=77.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-Cc------------------------------ccCCCcccccCccccc--cC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AA------------------------------AENFPFCTIDPNENNK--VP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~------------------------------~~~~~~~T~~~~~~~~--~~ 140 (561)
...++|+++|.+|+|||||+|+|++.. .. ....+|+|.+...... ..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 345789999999999999999996432 10 1114678877654322 23
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhcc-chhhHhhhHHHHHHHHHHhcch----hh
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISL-NTITIWRNLKLLETRIRDLRRS----VD 215 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~----v~ 215 (561)
..+.||||||..... ......++.+|++|+|+|++...... .. ......+.+ ..+..+..+ |+
T Consensus 255 ~~i~iiDTPGh~~f~-------~~~~~~~~~aD~alLVVDa~~g~~e~-gi~~~~qt~e~l----~~~~~lgip~iIvvi 322 (592)
T 3mca_A 255 KIYEIGDAPGHRDFI-------SGMIAGASSADFAVLVVDSSQNNFER-GFLENGQTREHA----YLLRALGISEIVVSV 322 (592)
T ss_dssp ----CCEEESSSEEE-------EECCC-------CCSEEEEEECCSST-TSCSCSSHHHHH----HHHHHSSCCCEEEEE
T ss_pred eEEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCCcccc-ccccchHHHHHH----HHHHHcCCCeEEEEE
Confidence 578999999986322 23355678899999999986321000 00 000111111 122233332 89
Q ss_pred ccccccCcCCCC-CccHHHHHHHh-hhcC----CCcEEEEEccCCCCHH--------------HHHHHHHhhc
Q psy17315 216 AKADSKKKMGPK-KTDEGEKKMLL-GRVG----TNLKVGIVGVPNVGKS--------------TFFNVLTKRA 268 (561)
Q Consensus 216 NK~D~~~~~~~~-~~~~~~l~~l~-~~~~----~~~~i~isg~~~~Gks--------------~l~~~l~~~~ 268 (561)
||+|+....... ......+..+. .... ..+.+.+||++|.|+. +|++.|....
T Consensus 323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 999997421000 00112233333 2222 2257999999999997 7888887653
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-10 Score=124.35 Aligned_cols=155 Identities=14% Similarity=0.048 Sum_probs=88.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--------------------cccCCeEEEEeCCCcccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--------------------NKVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--------------------~~~~~~i~l~DtpG~~~~ 154 (561)
+.++|+++|.+|+|||||+|+|++.........|.|.+.... ......+.||||||....
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 357899999999999999999987642111111333321100 001125999999998644
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCC----
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPK---- 227 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~---- 227 (561)
... ....++.+|++++|+|++.. .....++.+. .+.....+ ++||+|+.......
T Consensus 84 ~~~-------~~r~~~~aD~aILVvDa~~G-------v~~qT~e~l~----~l~~~~vPiIVViNKiDl~~~~~~~~~~~ 145 (594)
T 1g7s_A 84 TTL-------RKRGGALADLAILIVDINEG-------FKPQTQEALN----ILRMYRTPFVVAANKIDRIHGWRVHEGRP 145 (594)
T ss_dssp TTS-------BCSSSBSCSEEEEEEETTTC-------CCHHHHHHHH----HHHHTTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred HHH-------HHHHHhhCCEEEEEEECCCC-------ccHhHHHHHH----HHHHcCCeEEEEecccccccccccccCCc
Confidence 321 12345789999999998631 0111222222 22223333 89999997532211
Q ss_pred ---------CccHHHH--------HHHhhh-------------cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 228 ---------KTDEGEK--------KMLLGR-------------VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 228 ---------~~~~~~l--------~~l~~~-------------~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
......+ ..+... ....+.+.+||++|.|+..|++++...
T Consensus 146 ~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 0000111 111111 112368999999999999999999864
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-11 Score=125.71 Aligned_cols=157 Identities=14% Similarity=0.083 Sum_probs=94.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC---Cc------c--------cCCCcccccCcccc--ccCCeEEEEeCCCcccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS---AA------A--------ENFPFCTIDPNENN--KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~---~~------~--------~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~ 154 (561)
...++|+++|.+|+|||||+|+|++.. .. . ...+|+|.+..... .....+.++||||....
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 345799999999999999999998741 10 0 01356666543321 12357999999997532
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
.......++.+|++++|+|++.... ....+.+ ..+.....+ ++||+|+......-...
T Consensus 89 -------~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l----~~~~~~~ip~iivviNK~Dl~~~~~~~~~~ 150 (405)
T 2c78_A 89 -------IKNMITGAAQMDGAILVVSAADGPM-------PQTREHI----LLARQVGVPYIVVFMNKVDMVDDPELLDLV 150 (405)
T ss_dssp -------HHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHH----HHHHHTTCCCEEEEEECGGGCCCHHHHHHH
T ss_pred -------HHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHH----HHHHHcCCCEEEEEEECccccCcHHHHHHH
Confidence 2233455788999999999863210 1111111 122222222 79999997310000001
Q ss_pred HHHHHHHhhhcC----CCcEEEEEccCCCC------------------HHHHHHHHHhhc
Q psy17315 231 EGEKKMLLGRVG----TNLKVGIVGVPNVG------------------KSTFFNVLTKRA 268 (561)
Q Consensus 231 ~~~l~~l~~~~~----~~~~i~isg~~~~G------------------ks~l~~~l~~~~ 268 (561)
..++..+..... ..+.+.+||++|.| +.+|+++|.+..
T Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 151 EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 112333333332 35789999999987 778888887754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-11 Score=110.82 Aligned_cols=160 Identities=15% Similarity=0.185 Sum_probs=66.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+. .+.. ..+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG--IDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGI 84 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHC--EEEEEEEEEETTEEEEEEEEEC----------CCTTTTTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--ceeEEEEEEECCEEEEEEEEcCCCChh-hhhhHHHHHhcCCEE
Confidence 36799999999999999999998765444333221 1111 1222222 4688999999543 322222221111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
.++- ++.+.+.+..+..++.. +.... ....|+++|+||+|. ..
T Consensus 85 --------------i~v~--d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piilv~nK~Dl--~~ 127 (183)
T 2fu5_C 85 --------------MLVY--DITNEKSFDNIRNWIRN------------------IEEHA-SADVEKMILGNKCDV--ND 127 (183)
T ss_dssp --------------EEEE--ETTCHHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEEC--C--CS
T ss_pred --------------EEEE--ECcCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECccC--Cc
Confidence 1111 11222333333333221 11111 136899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+.+.+++... +.+++++||+++.|+.++.+.......
T Consensus 128 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 128 KRQVSKERGEKLALDY--GIKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CCCSCHHHHHHHHHHH--TCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222345555665554 678999999999999888766555443
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-10 Score=108.41 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=89.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+++..+.....+ +.+... ..+.+.+ ..+.+|||+|.++ +. +.+....++
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-t~~~~~--~~~~~~~~~~~l~i~Dt~G~~~-~~-----~~~~~~~~i 90 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP-EGGRFK--KEIVVDGQSYLLLIRDEGGPPE-LQ-----FAAWVDAVV 90 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT-TCEEEE--EEEEETTEEEEEEEEECSSSCC-HH-----HHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-CcceEE--EEEEECCEEEEEEEEECCCChh-hh-----eecCCCEEE
Confidence 46899999999999999999998876543322 222111 1222222 3577899999543 22 111122221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|+.. +.........|+++|+||+|......
T Consensus 91 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl~~~~~ 136 (184)
T 3ihw_A 91 FVF----------------SLEDEISFQTVYNYFLR------------------LCSFRNASEVPMVLVGTQDAISAANP 136 (184)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHTTSCGGGSCEEEEEECTTCBTTBC
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECcccccccc
Confidence 111 22333444443333332 11111114689999999996421111
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+.+.+++... ...+++.+||++|.|++++.+...+..
T Consensus 137 ~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 137 RVIDDSRARKLSTDL-KRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp CCSCHHHHHHHHHHT-TTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc-CCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 223345555666554 137899999999999988866554443
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.1e-11 Score=116.95 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=84.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHH---------HHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEIN---------KIEKLV 313 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~---------~l~~~~ 313 (561)
++|.+.|.+|+|||+|+|.+++..+..+++ +|++ +... .+...+..+.+|||||+..... .+.+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~---pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNW---PGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEEC---TTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCC---CCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 579999999999999999999986443333 3443 3332 2334455789999999743111 111111
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
... ..+|++..|++.. . .+........+.. .++|+++|+||
T Consensus 79 ~~~--------------------------~~~d~vi~VvDas-----------~-~~~~~~l~~~l~~-~~~pvilv~NK 119 (256)
T 3iby_A 79 VID--------------------------LEYDCIINVIDAC-----------H-LERHLYLTSQLFE-LGKPVVVALNM 119 (256)
T ss_dssp HHH--------------------------SCCSEEEEEEEGG-----------G-HHHHHHHHHHHTT-SCSCEEEEEEC
T ss_pred Hhh--------------------------CCCCEEEEEeeCC-----------C-chhHHHHHHHHHH-cCCCEEEEEEC
Confidence 100 0001111111100 0 1112222222222 47999999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
+|...........+.+.+.+ +.+++++||++|.|+++|.+...
T Consensus 120 ~Dl~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~~~i~ 162 (256)
T 3iby_A 120 MDIAEHRGISIDTEKLESLL-----GCSVIPIQAHKNIGIPALQQSLL 162 (256)
T ss_dssp HHHHHHTTCEECHHHHHHHH-----CSCEEECBGGGTBSHHHHHHHHH
T ss_pred hhcCCcCCcHHHHHHHHHHc-----CCCEEEEECCCCCCHHHHHHHHH
Confidence 96532221223344454433 67899999999999988865543
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.4e-11 Score=109.97 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+++ |..-....+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEFGARMVNIDGKQIKLQIWDTAGQES-FRSITRSYYRGAAGAL 98 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----C-CSSEEEEEEEETTEEEEEEEECCTTGGG-TSCCCHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-cceeEEEEEEECCEEEEEEEEECCCchh-hhhhHHHHhccCCEEE
Confidence 3579999999999999999999886544333322 2110111222222 4688999999532 2211112211111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
. +- ++.+.+.+..+..++.. +.... ....|+++|+||+|. ...
T Consensus 99 ~--------------v~--d~~~~~s~~~~~~~l~~------------------i~~~~-~~~~piilv~nK~Dl--~~~ 141 (191)
T 2a5j_A 99 L--------------VY--DITRRETFNHLTSWLED------------------ARQHS-SSNMVIMLIGNKSDL--ESR 141 (191)
T ss_dssp E--------------EE--ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTC--GGG
T ss_pred E--------------EE--ECCCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECccc--CCc
Confidence 1 11 11222222222222211 11111 137899999999954 322
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+.+.+++... +.+++++||+++.|++++.+...+...
T Consensus 142 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 142 RDVKREEGEAFAREH--GLIFMETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233344555555554 678999999999999888665544433
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=107.80 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=85.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+..+. ....+.. ....+.+|||||.++ +..+...+.+....++.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF-FSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSE-EEEEEEETTEEEEEEEEECCCSGG-GGGGTHHHHTTCSEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEE-EEEEEEECCEEEEEEEEeCCCChh-hhhhhHHHhccCCEEEE
Confidence 5799999999999999999998865543333221111 1111111 234688999999532 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+- ++.+...+..+..++.. +..... ...|+++|+||+|. ....
T Consensus 91 --------------v~--d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~p~i~v~nK~Dl--~~~~ 133 (181)
T 2efe_B 91 --------------VF--DVTNQASFERAKKWVQE------------------LQAQGN-PNMVMALAGNKSDL--LDAR 133 (181)
T ss_dssp --------------EE--ETTCHHHHHHHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--TTTC
T ss_pred --------------EE--ECCCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECCcc--cccc
Confidence 11 11122222222222221 111111 36899999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+.+.+++... +.+++++||++|.|+.++.+..
T Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 134 KVTAEDAQTYAQEN--GLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCSSSCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 33445666666554 6789999999999987775443
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=109.22 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=85.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++.+.+..+.... .++.+.. .....+......+.+|||+|.++ +..+.. +.+....++.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~-~~~~~~~~il 97 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFISEY-DPNLEDTYSSEETVDHQPVHLRVMDTADLDT-PRNCER-YLNWAHAFLV 97 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEEEEEEETTEEEEEEEEECCC----CCCTHH-HHTTCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCCccc-CCCccceeeEEEEECCEEEEEEEEECCCCCc-chhHHH-HHhhCCEEEE
Confidence 468999999999999999999988654322 2222211 00011112224678999999643 222221 2222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh--hccCCceEEEecCChhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN--LLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~--~l~~kP~iiv~NK~D~d~~~ 400 (561)
.+ .+.+.+.+..+..|+.. +.... .....|+++|+||+|. ..
T Consensus 98 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~piilv~nK~Dl--~~ 141 (187)
T 3c5c_A 98 VY----------------SVDSRQSFDSSSSYLEL------------------LALHAKETQRSIPALLLGNKLDM--AQ 141 (187)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHHHHHCCCCCEEEEEECGGG--GG
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHHhhccCCCCCEEEEEECcch--hh
Confidence 11 12233444434333322 11111 0147899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeech-hhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSG-VFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA-~~~~gl~~L~~~~~ 441 (561)
......++..+++... +.+++.+|| +++.|+.++.+...
T Consensus 142 ~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~g~gv~~lf~~l~ 181 (187)
T 3c5c_A 142 YRQVTKAEGVALAGRF--GCLFFEVSACLDFEHVQHVFHEAV 181 (187)
T ss_dssp GCSSCHHHHHHHHHHH--TCEEEECCSSSCSHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHc--CCcEEEEeecCccccHHHHHHHHH
Confidence 2233345555665554 678999999 89999888755443
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-10 Score=119.97 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=87.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
+|+++|.+|+|||||+|+|+ ..|.|.+..... .....+.++||||..... ......++.+|++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~-------~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL-------KSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-------HHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-------HHHHHHHHHCCEE
Confidence 89999999999999999998 345555543321 234579999999985322 2334556889999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc-cccccCcCCCCCccHHHHHHHhhhc--CCCcEEE
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA-KADSKKKMGPKKTDEGEKKMLLGRV--GTNLKVG 248 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N-K~D~~~~~~~~~~~~~~l~~l~~~~--~~~~~i~ 248 (561)
++|+| ... ......+.+ ..+..+..+ +.| |+|+ ..... .....++..+.... ...+.+.
T Consensus 88 ilVvd-~~g-------~~~qt~e~~----~~~~~~~i~~~ivvvNNK~Dl-~~~~~-~~~~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 88 VLCIP-PQG-------LDAHTGECI----IALDLLGFKHGIIALTRSDST-HMHAI-DELKAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp EEEEC-TTC-------CCHHHHHHH----HHHHHTTCCEEEEEECCGGGS-CHHHH-HHHHHHHHHHTTTSTTTTCEEEE
T ss_pred EEEEc-CCC-------CcHHHHHHH----HHHHHcCCCeEEEEEEeccCC-CHHHH-HHHHHHHHHHHHhcCCCceEEEe
Confidence 99998 421 000111111 112222222 778 9998 32110 00112333333332 2357789
Q ss_pred --EEccC---CCCHHHHHHHHHhhc
Q psy17315 249 --IVGVP---NVGKSTFFNVLTKRA 268 (561)
Q Consensus 249 --isg~~---~~Gks~l~~~l~~~~ 268 (561)
+||++ |.|++.|+++|.+..
T Consensus 154 ~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 154 LNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp CCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred cccccccCcCCCCHHHHHHHHHhhc
Confidence 99999 999999999988763
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-11 Score=123.38 Aligned_cols=156 Identities=14% Similarity=0.114 Sum_probs=86.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-C-----cccCCCc----------------------ccccC-----------c--
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-A-----AAENFPF----------------------CTIDP-----------N-- 134 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~-----~~~~~~~----------------------~T~~~-----------~-- 134 (561)
.++|+++|.||||||||+|+|+|.. . .++..|+ +|++. .
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999977 3 3444566 33330 0
Q ss_pred --ccc-----------ccCCeEEEEeCCCcccCCccc--c----cccccccccccc-CCEEEEEecccccchhhhccchh
Q psy17315 135 --ENN-----------KVPAFLNVVDIAGLVKGAAEG--Q----GLGNAFLSHISA-CDAIFHLCKEKLRNIFFISLNTI 194 (561)
Q Consensus 135 --~~~-----------~~~~~i~l~DtpG~~~~~~~~--~----~~~~~~l~~i~~-~D~il~VvD~~~~~~~~~~~~~~ 194 (561)
.+. .....+.||||||+......+ . .+......+++. +++|++|+|+.. +
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~--------- 180 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-D--------- 180 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-C---------
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-c---------
Confidence 000 013469999999997532110 1 111222333434 456666776531 0
Q ss_pred hHhhhHHH--HHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 195 TIWRNLKL--LETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 195 ~~~~~~~~--l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+...+. +...+.....+ |+||+|+.+.... ....+...... .+....+.+|+.+|.|+.+|++++.+
T Consensus 181 --~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 181 --LANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTD---ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp --GGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCC---CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred --cchhHHHHHHHHhCcCCCceEEEeccccccCcchh---HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 111111 11222222222 9999999854221 11111110000 11224577999999999999999876
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-11 Score=106.22 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=83.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+. .++. ....+.. ....+.+|||||..+ +..+...+......++.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPT-IEDS-YRKQVVIDGETCLLDILDTAGQEE-YSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT-CCEE-EEEEEEETTEEEEEEEEECCCCSS-CCHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCc-cceE-EEEEEEECCEEEEEEEEECCCchh-hhHHHHHhhccCCEEEE
Confidence 46999999999999999999987544322221 1111 0111112 223578999999532 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..++.. +.........|+++|+||+|. .. .
T Consensus 81 v~----------------d~~~~~~~~~~~~~~~~------------------i~~~~~~~~~p~iiv~nK~Dl--~~-~ 123 (166)
T 2ce2_X 81 VF----------------AINNTKSFEDIHQYREQ------------------IKRVKDSDDVPMVLVGNKSDL--AA-R 123 (166)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHHTCSCCCEEEEEECTTC--SC-C
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEEchhh--hh-c
Confidence 11 11222332222222211 222221237899999999954 32 2
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+.+.++.+.. +.+++++||+++.|+.++.+...
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 124 TVESRQAQDLARSY--GIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp CSCHHHHHHHHHHH--TCCEEEECTTTCTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence 23344555555544 57899999999999887755443
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=107.62 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=40.4
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
..|+++|+||+| ........+++.+++... +.+++++||+++.|+.++.+...+.
T Consensus 147 ~~piilv~NK~D---~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 147 NYIIILVANKID---KNKFQVDILEVQKYAQDN--NLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp CCEEEEEEECTT---CC-CCSCHHHHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEEECCC---cccccCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Confidence 589999999996 222334456677777665 6789999999999998876655443
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=108.45 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=83.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+. ....+... ...+.+|||||.++....+...+.+....++
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF-RERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE-EEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEE-EEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 36899999999999999999998765443332221111 01112222 2468899999965422133333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+...+..+..++.. +.........|+++|+||+|. ...
T Consensus 99 lv~----------------D~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 142 (189)
T 1z06_A 99 FVY----------------DMTNMASFHSLPAWIEE------------------CKQHLLANDIPRILVGNKCDL--RSA 142 (189)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHCCCSCCCEEEEEECTTC--GGG
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--ccc
Confidence 111 11222222222222221 222211247899999999954 322
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhh---hhhCCC
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFE---HQLVDM 436 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~---~gl~~L 436 (561)
.....+...++.... +.+++++||+++ .|+.++
T Consensus 143 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 143 IQVPTDLAQKFADTH--SMPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp CCSCHHHHHHHHHHT--TCCEEECCSSSGGGGSCHHHH
T ss_pred ceeCHHHHHHHHHHc--CCEEEEEeCCcCCcccCHHHH
Confidence 222344555555544 578999999999 554443
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-10 Score=106.21 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=87.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc-ccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP-VRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp-~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |. +. ...+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-GV-EFLNKDLEVDGHFVTMQIWDTAGQER-FRSLRTPFYRGSDCC 83 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CC-SE-EEEEEEEEETTEEEEEEEEECCCCGG-GHHHHGGGGTTCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-ee-eEEEEEEEECCEEEEEEEEeCCCchh-hhhhHHHHHhcCCEE
Confidence 3579999999999999999999886554333322 21 11 11222222 3688999999543 333333333222221
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+...+..+..++.. .............|+++|+||+|. ..
T Consensus 84 i~v~----------------d~~~~~s~~~~~~~~~~---------------~~~~~~~~~~~~~p~i~v~nK~Dl--~~ 130 (177)
T 1wms_A 84 LLTF----------------SVDDSQSFQNLSNWKKE---------------FIYYADVKEPESFPFVILGNKIDI--SE 130 (177)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH---------------HHHHHTCSCTTTSCEEEEEECTTC--SS
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH---------------HHHHccccccCCCcEEEEEECCcc--cc
Confidence 1111 11222222222222221 111111111146899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+.+.+++... .+.+++++||++|.|+.++.+...+
T Consensus 131 -~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 131 -RQVSTEEAQAWCRDN-GDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp -CSSCHHHHHHHHHHT-TCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHhc-CCceEEEEeCCCCCCHHHHHHHHHH
Confidence 233455666665532 2678999999999999887555443
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-10 Score=105.85 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=51.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc---ccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA---AENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~---~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++.... ++..|++|.+. ....+.+|||||...... .+...+...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~ 118 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRY---KLSDYLKTRAKF 118 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-----CCTTCSEEEETTCCBSSC---CHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-----cCCeEEEEECCCCchHHH---HHHHHHHhhccc
Confidence 4579999999999999999999987622 23344444432 244688999999865432 112222333456
Q ss_pred CCEEEEEeccc
Q psy17315 172 CDAIFHLCKEK 182 (561)
Q Consensus 172 ~D~il~VvD~~ 182 (561)
+|++++|+|++
T Consensus 119 ~~~~i~v~d~~ 129 (193)
T 2ged_A 119 VKGLIFMVDST 129 (193)
T ss_dssp EEEEEEEEETT
T ss_pred CCEEEEEEECC
Confidence 89999999875
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-10 Score=110.21 Aligned_cols=161 Identities=16% Similarity=0.237 Sum_probs=87.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+. ....+...+ ..+.+|||||.++ +..+...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~---- 81 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF-KIKTVELDGKTVKLQIWDTAGQER-FRTITSSYYRGS---- 81 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE-EEEEEEETTEEEEEEEECCTTTTT-TTCCCGGGGTTC----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEEECCEEEEEEEEeCCChHH-HHHHHHHhccCC----
Confidence 36899999999999999999999876544333321111 111222222 3688999999432 111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
|...++- ++.+.+.+..+..++.. +..... ...|+++|+||+|. ...
T Consensus 82 ----------d~vilv~--d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piilv~nK~Dl--~~~ 128 (206)
T 2bcg_Y 82 ----------HGIIIVY--DVTDQESFNGVKMWLQE------------------IDRYAT-STVLKLLVGNKCDL--KDK 128 (206)
T ss_dssp ----------SEEEEEE--ETTCHHHHHHHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--TTT
T ss_pred ----------CEEEEEE--ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCCEEEEEECCCC--ccc
Confidence 1111111 11222232222222221 221111 36899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+...+++... +.+++++||++|.|++++.+.....+.
T Consensus 129 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 129 RVVEYDVAKEFADAN--KMPFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CCSCHHHHHHHHHHT--TCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233344555555544 678999999999999888666555443
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9e-11 Score=121.83 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=85.7
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC------C-CcccCCCcccc----------------------------------
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS------S-AAAENFPFCTI---------------------------------- 131 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~------~-~~~~~~~~~T~---------------------------------- 131 (561)
......|+++|.||||||||+|+|+.. + ..+..-|+.+.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 345678999999999999999999632 1 11111111111
Q ss_pred ------cCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHH
Q psy17315 132 ------DPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLE 204 (561)
Q Consensus 132 ------~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~ 204 (561)
+.... ...+..+.|+||||+.... ...+..+|++++|+|+...+.. .. +.
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~----------~~~~~~aD~vl~V~d~~~~~~~-------~~------l~ 212 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSE----------VAVANMVDTFVLLTLARTGDQL-------QG------IK 212 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHH----------HHHHTTCSEEEEEEESSTTCTT-------TT------CC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH----------HHHHHhCCEEEEEECCCCCccH-------HH------HH
Confidence 00000 1124579999999974321 1224789999999987532210 00 00
Q ss_pred HHHHHh-cchhhccccccCcCCCCCccHHHHHHHhhhcC------CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 205 TRIRDL-RRSVDAKADSKKKMGPKKTDEGEKKMLLGRVG------TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 205 ~~l~~~-~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~------~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+. ...|+||+|+........ ....+...+.... ..+.+.+|+++|.|++.|+++|.+..
T Consensus 213 ~~~~~~p~ivVlNK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 213 KGVLELADIVVVNKADGEHHKEARL-AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp TTSGGGCSEEEEECCCGGGHHHHHH-HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HhHhhcCCEEEEECCCCcChhHHHH-HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 011111 111899999873211100 1112222222221 34689999999999999999998764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8.2e-11 Score=107.32 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=81.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+.-+. ....+... ...+.+|||||.++ +..+...+.+....+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~-- 79 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQIWDTAGQER-FRTITTAYYRGAMGI-- 79 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCE-EEEEEESSSCEEEEEEECCTTGGG-TSCCCHHHHTTEEEE--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE-EEEEEEECCEEEEEEEEeCCCChh-hhhhHHHHhccCCEE--
Confidence 5799999999999999999998865443333221111 01112222 23688999999432 211111111111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++- ++.+...+..+..++. .+..... ...|+++|+||+|. .. .
T Consensus 80 ------------i~v~--d~~~~~s~~~~~~~~~------------------~i~~~~~-~~~piilv~nK~Dl--~~-~ 123 (170)
T 1g16_A 80 ------------ILVY--DITDERTFTNIKQWFK------------------TVNEHAN-DEAQLLLVGNKSDM--ET-R 123 (170)
T ss_dssp ------------EEEE--ETTCHHHHHTHHHHHH------------------HHHHHSC-TTCEEEEEEECTTC--TT-C
T ss_pred ------------EEEE--ECCCHHHHHHHHHHHH------------------HHHHhcC-CCCcEEEEEECccC--Cc-C
Confidence 1111 1111122221111111 1221111 36899999999964 21 2
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+...++++.. +.+++++||++|.|+.++.+...+.
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 124 VVTADQGEALAKEL--GIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp CSCHHHHHHHHHHH--TCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33344555555544 5789999999999998876554443
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.1e-11 Score=111.00 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=84.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+......+......+.+|||||.++ +..+...+.+....++
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~i-- 99 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEE-YDRLRPLSYADSDVVL-- 99 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-GTTTGGGGCTTCSEEE--
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHH-HHHHhHhhccCCcEEE--
Confidence 4689999999999999999999986543332221111111111111223568999999432 2222222211111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
++- ++.+.+.+..+. .|+ ..+... ....|+++|+||+|.......
T Consensus 100 ------------~v~--d~~~~~s~~~~~~~~~------------------~~~~~~--~~~~p~ilv~nK~Dl~~~~~~ 145 (194)
T 3reg_A 100 ------------LCF--AVNNRTSFDNISTKWE------------------PEIKHY--IDTAKTVLVGLKVDLRKDGSD 145 (194)
T ss_dssp ------------EEE--ETTCHHHHHHHHHTHH------------------HHHHHH--CTTSEEEEEEECGGGCCTTTT
T ss_pred ------------EEE--ECCCHHHHHHHHHHHH------------------HHHHHh--CCCCCEEEEEEChhhccCCCC
Confidence 110 122223322221 111 112211 146899999999954211112
Q ss_pred cchHHHHHHHHHhcCCCCe-EEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGAT-IIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~-vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+.+.+++... +.+ ++++||++|.|+.++.+...+
T Consensus 146 ~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 146 DVTKQEGDDLCQKL--GCVAYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp CCCHHHHHHHHHHH--TCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred cccHHHHHHHHHhc--CCCEEEEeecCCCCCHHHHHHHHHH
Confidence 23345555555554 445 999999999998887555443
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-10 Score=108.13 Aligned_cols=157 Identities=11% Similarity=0.165 Sum_probs=85.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+....+......+......+.+|||||.++ +..+...+.+....++.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ-FPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGS-CHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHH-hHHHHHHhhccCCEEEE
Confidence 34689999999999999999999986654443332222211111112224688999999543 33333333322222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~~~ 401 (561)
.+ .+.+.+.+..+..+ ...+..... ....|+++|+||+|. ..
T Consensus 86 v~----------------d~~~~~s~~~~~~~------------------~~~i~~~~~~~~~~piilv~nK~Dl--~~- 128 (199)
T 2gf0_A 86 VF----------------SVTSKQSLEELGPI------------------YKLIVQIKGSVEDIPVMLVGNKCDE--TQ- 128 (199)
T ss_dssp EE----------------ETTCHHHHHTTHHH------------------HHHHHHHHSCGGGSCEEEEEECTTC--SS-
T ss_pred EE----------------ECcCHHHHHHHHHH------------------HHHHHHHhcCCCCCCEEEEEECccC--Cc-
Confidence 11 11111221111111 111221110 136899999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.....+...+++... +.+++++||++|.|+.++.+.
T Consensus 129 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 129 REVDTREAQAVAQEW--KCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp CSSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHH
T ss_pred cccCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHH
Confidence 222334444444443 578999999999998777444
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-10 Score=105.44 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=82.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+. .|..-....+.. ....+.+|||||.++ +..+...+.+....++.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPT-IGAAFLTQRVTINEHTVKFEIWDTAGQER-FASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-SSEEEEEEEEEETTEEEEEEEEEECCSGG-GGGGHHHHHTTCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-cceeEEEEEEEECCEEEEEEEEECCCChh-hhhhhhhhhccCcEEEE
Confidence 47999999999999999999988654333322 222111111222 224688999999533 33333333222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK- 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~- 401 (561)
.+ ++.+...+..+..++.. +.... ....|+++|+||+|. ...
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~piilv~nK~Dl--~~~~ 124 (170)
T 1ek0_A 82 VY----------------DVTKPQSFIKARHWVKE------------------LHEQA-SKDIIIALVGNKIDX--LQEG 124 (170)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEECGGG--GGSS
T ss_pred EE----------------ecCChHHHHHHHHHHHH------------------HHHhc-CCCCcEEEEEECCCc--cccc
Confidence 11 11222222222222221 11111 136899999999954 322
Q ss_pred --ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 402 --KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 402 --~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.....+...+++... +.+++++||+++.|+.++.+
T Consensus 125 ~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEK--GLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp CCCCSCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHH
T ss_pred cccCCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHH
Confidence 122233444444443 57899999999999877643
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-11 Score=128.95 Aligned_cols=159 Identities=19% Similarity=0.278 Sum_probs=82.7
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
....+|.+.|.+|+|||+|+|.+++..+ ..++..+||+ |... .+...+..+.+|||||+++..+.++....+....
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDR--AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHB--SCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence 3456899999999999999999999743 2334445554 3322 2333456789999999865333333322111111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
. +..+|+++.|++.. ..+...+..++... ..+|+++|+||+|. .
T Consensus 300 ~---------------------~~~aD~vl~VvD~s----------~~~~~~~~~i~~~l---~~~piivV~NK~Dl--~ 343 (462)
T 3geh_A 300 A---------------------ANTADLVLLTIDAA----------TGWTTGDQEIYEQV---KHRPLILVMNKIDL--V 343 (462)
T ss_dssp C---------------------CCSCSEEEEEEETT----------TCSCHHHHHHHHHH---TTSCEEEEEECTTS--S
T ss_pred h---------------------hhcCCEEEEEeccC----------CCCCHHHHHHHHhc---cCCcEEEEEECCCC--C
Confidence 1 11223333332210 12344454544433 35899999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.... ...+++ .....+++++||++|.|+++|.+...+.+
T Consensus 344 ~~~~--~~~~~~----~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 344 EKQL--ITSLEY----PENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CGGG--STTCCC----CTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cchh--hHHHHH----hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 2111 111111 11246799999999999999876665543
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-10 Score=106.16 Aligned_cols=159 Identities=7% Similarity=0.086 Sum_probs=87.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+||++|++.+++..+.. +.++.+.. -...+... ...+.+|||+|.++ . .+.+....++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~-----~~~~~~d~~i 77 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-A-----KFSGWADAVI 77 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-H-----HHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCccee-EEEEEEECCEEEEEEEEECCCCch-h-----HHHHhCCEEE
Confidence 3579999999999999999999987653 23322321 11112222 24578899999643 1 1222222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|+.. ...+.... ....|+++|+||+|......
T Consensus 78 lv~----------------D~~~~~s~~~~~~~~~~---------------i~~~~~~~-~~~~piilv~nK~Dl~~~~~ 125 (178)
T 2iwr_A 78 FVF----------------SLEDENSFQAVSRLHGQ---------------LSSLRGEG-RGGLALALVGTQDRISASSP 125 (178)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH---------------HHHHHCSS-SCCCEEEEEEECTTCBTTBC
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH---------------HHHHHhcC-CCCCCEEEEEECcccccccc
Confidence 111 12223333333332211 11111111 13689999999996421111
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+++.+++... .+.+++++||++|.|++++.+......
T Consensus 126 ~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 126 RVVGDARARALXADM-KRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp CCSCHHHHHHHHHHH-SSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHhh-cCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 223345555555443 257899999999999988866655443
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.3e-10 Score=103.07 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=83.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |. +.. ..+... ...+.+|||||.++ +..+...+.+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI-GA-DFLTKEVTVDGDKVATMQVWDTAGQER-FQSLGVAFYRGADC 84 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C-CC-SCEEEEECCSSSCCEEEEEECCC-----------CCSTTCCE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc-ce-EEEEEEEEEcCCcEEEEEEEECCCChH-hhhhhHHHhhcCCE
Confidence 4679999999999999999999886554333222 21 111 122222 23678999999533 33333222222211
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
++..+ ++.+...+..+..++.. .............|+++|+||+|....
T Consensus 85 ~i~v~----------------d~~~~~s~~~~~~~~~~---------------~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 85 CVLVY----------------DVTNASSFENIKSWRDE---------------FLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp EEEEE----------------ETTCHHHHHTHHHHHHH---------------HHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred EEEEE----------------ECCChHHHHHHHHHHHH---------------HHHHhcccCcCCCcEEEEEECCccccc
Confidence 11111 11222222222222221 000000001146899999999964211
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+.+.++.... .+.+++++||++|.|++++.+.....++
T Consensus 134 -~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 134 -KKIVSEKSAQELAKSL-GDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp -GCCSCHHHHHHHHHHT-TSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -cccCCHHHHHHHHHhc-CCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1122345555555422 2678999999999999888666554443
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-11 Score=111.19 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=39.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+.+..+....+.++.|.. ...+......+.+|||+|.+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEETTEEEEEEEECCSG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEeCCEEEEEEECCCCH
Confidence 456899999999999999999999876552333333421 11233344578999999964
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-10 Score=109.13 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=86.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+||++|++.+.+..+.....+. .|..-....+ ......+.+|||||.++ +..+...+.+....++
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAAT-IGVDFKVKTISVDGNKAKLAIWDTAGQER-FRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-CSEEEEEEEEEETTEEEEEEEEEECSSGG-GCCSHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCc-cceEEEEEEEEECCeEEEEEEEeCCCchh-hhhhhHHHhccCCEEE
Confidence 357999999999999999999998665433332 2221011112 22234688999999532 2222222222221111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..++.. +........+|+++|+||+|. ..
T Consensus 93 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~p~ilv~nK~Dl--~~- 135 (195)
T 1x3s_A 93 LVY----------------DVTRRDTFVKLDNWLNE------------------LETYCTRNDIVNMLVGNKIDK--EN- 135 (195)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HTTCCSCSCCEEEEEEECTTS--SS-
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcCcCCCcEEEEEECCcC--cc-
Confidence 111 11112222222222211 111111246899999999964 22
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....+...+++... +.+++++||+++.|+.++.+...+.
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (195)
T 1x3s_A 136 REVDRNEGLKFARKH--SMLFIEASAKTCDGVQCAFEELVEK 175 (195)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHH
Confidence 222344455555554 6789999999999998875554443
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-10 Score=103.84 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=86.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH----------HHHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI----------EKEINKIEKLVQ 314 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi----------~~~~~~l~~~~~ 314 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+ |++.....+.. ..+.+|||||+ ++.+..+...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~---~~t~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP---GVTRKIIEIEW--KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST---TCTTSCEEEEE--TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC---CccceeEEEec--CCEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999865544333 33211111222 16889999994 333444433333
Q ss_pred hC-CccccchhhhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEec
Q psy17315 315 RG-DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVN 392 (561)
Q Consensus 315 ~~-~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~N 392 (561)
+. ...+... ..+ .+......+ ..|... .....+.+.+..... ...|+++|+|
T Consensus 77 ~~~~~~~~~v-----------~~v-----~d~~s~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~piilv~n 130 (190)
T 2cxx_A 77 EDNAKNIDVA-----------VLV-----VDGKAAPEIIKRWEKR---------GEIPIDVEFYQFLRE-LDIPTIVAVN 130 (190)
T ss_dssp HHHGGGCCEE-----------EEE-----EETTHHHHHHHHHHHT---------TCCCHHHHHHHHHHH-TTCCEEEEEE
T ss_pred HhhhccCCEE-----------EEE-----EcchhhhhHHHhhhcc---------CccHHHHHHHHHHHh-cCCceEEEee
Confidence 22 1111110 011 111222222 223222 112233333333322 4799999999
Q ss_pred CChhhhhhhccchHHHHHHHHHhcC-CC----CeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 393 LSAKDYIKKKNKWLPKIKEWVDAND-PG----ATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 393 K~D~d~~~~~~~~~~~l~~~~~~~~-~~----~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
|+|. .... .+.++++.+... +. .+++++||++|.|++++.+...+.+
T Consensus 131 K~Dl--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 131 KLDK--IKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp CGGG--CSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hHhc--cCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 9954 3211 223333333221 11 2579999999999988866554443
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-10 Score=109.32 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=84.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+||++|++.+.+..+.....+.++-+. ....+.+.+ ..+.+|||||.++ +..+...+.+....+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQLWDTAGQER-FRTITTAYYRGAMGI 96 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCE-EEEEEEETTEEEEEEEECCTTGGG-GTCCCHHHHTTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEEECCEEEEEEEEeCCCcHH-HHHHHHHHhccCCEE
Confidence 346899999999999999999998765444333321111 111222222 4688999999532 221111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+ ++- ++.+...+..+..++. .+..... ...|+++|+||+|. ..
T Consensus 97 i--------------~v~--d~~~~~s~~~~~~~~~------------------~i~~~~~-~~~piilv~nK~Dl--~~ 139 (213)
T 3cph_A 97 I--------------LVY--DVTDERTFTNIKQWFK------------------TVNEHAN-DEAQLLLVGNKSDM--ET 139 (213)
T ss_dssp E--------------EEE--ETTCHHHHHTHHHHHH------------------HHHHHTT-TCSEEEEEEECTTC--SS
T ss_pred E--------------EEE--ECCCHHHHHHHHHHHH------------------HHHHhcC-CCCCEEEEEECCCC--cc
Confidence 1 110 1111122221111111 1221111 36899999999964 21
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....+...+++... +.+++++||+++.|+.++.+.....
T Consensus 140 -~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 179 (213)
T 3cph_A 140 -RVVTADQGEALAKEL--GIPFIESSAKNDDNVNEIFFTLAKL 179 (213)
T ss_dssp -CCSCHHHHHHHHHHH--TCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 223334455555444 5689999999999998876555443
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-10 Score=108.68 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+||++|++.+.+..+..... .+.|..-....+.. ....+.+|||||.++ +..+...+.+....+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENIS-ATLGVDFQMKTLIVDGERTVLQLWDTAGQER-FRSIAKSYFRKADGV 104 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTT-CHHHHHHHHHHCSEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCC-CCccceeEEEEEEECCEEEEEEEEECCCCcc-hhhhHHHHHhhCCEE
Confidence 34689999999999999999999886543322 22222100111212 224588999999543 333333332222222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh-
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI- 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~- 399 (561)
+..+ ++.+...+..+..++. .+..... ...|+++|+||+|....
T Consensus 105 ilv~----------------d~~~~~s~~~~~~~~~------------------~i~~~~~-~~~piilv~NK~Dl~~~~ 149 (199)
T 2p5s_A 105 LLLY----------------DVTCEKSFLNIREWVD------------------MIEDAAH-ETVPIMLVGNKADIRDTA 149 (199)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHH------------------HHHHHC----CCEEEEEECGGGHHHH
T ss_pred EEEE----------------ECCChHHHHHHHHHHH------------------HHHHhcC-CCCCEEEEEECccccccc
Confidence 1111 1111222222222211 1222111 36899999999965311
Q ss_pred ---hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 ---KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ---~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.......+...+++... +.+++++||++|.|+.++.+..
T Consensus 150 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 150 ATEGQKCVPGHFGEKLAMTY--GALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp HHTTCCCCCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHH
Confidence 01112233444554444 6789999999999987775443
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-10 Score=105.45 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=82.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+ + .+.. ..+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI-G-IDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC-S-EEEEEEEEEETTEEEEEEEEEECCSGG-GGGGSHHHHHTCSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-e-eEEEEEEEEECCeEEEEEEEECCCcHH-HHHHHHHHhcCCCEEE
Confidence 579999999999999999999876544333221 1 1111 1122222 3688999999533 2222222221111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+...+..+..++.. +..... ...|+++|+||+|. ...
T Consensus 92 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piilv~nK~Dl--~~~ 134 (179)
T 2y8e_A 92 VVY----------------DITNTNSFHQTSKWIDD------------------VRTERG-SDVIIMLVGNKTDL--SDK 134 (179)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHHT-TSSEEEEEEECGGG--GGG
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECCcc--ccc
Confidence 111 11111222222222211 111111 47899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.....+...+++... +.+++++||+++.|++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 135 RQVSTEEGERKAKEL--NVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEEEBTTTTBSHHHHHHH
T ss_pred CcCCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHH
Confidence 233334444555444 678999999999998776443
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-10 Score=107.73 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=75.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+.. -...+.. ....+.+|||||.++ +..+...+.+....++
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT-VFER-YMVNLQVKGKPVHLHIWDTAGQDD-YDRLRPLFYPDASVLL 110 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-------CCC-CCEE-EEEEEEETTEEEEEEEEEC----------------CEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-ccee-EEEEEEECCEEEEEEEEECCCchh-hhHHHHHHhccCCEEE
Confidence 468999999999999999999987653322221 1111 0111222 223688999999543 4333333322222111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
..+ ++.+.+.+..+. .|+. .+.... ...|+++|+||+|.....
T Consensus 111 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~--~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 111 LCF----------------DVTSPNSFDNIFNRWYP------------------EVNHFC--KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp EEE----------------ETTCHHHHHHHHHTHHH------------------HHHHHC--SSCCEEEEEECGGGGSCH
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEEEChhhhccc
Confidence 111 122223332222 1111 121111 378999999999542110
Q ss_pred h----------ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 K----------KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~----------~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
. .....++..+++... +. +++++||++|.|+.++.+...+..
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 155 SLVNKLRRNGLEPVTYHRGQEMARSV--GAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHT--TCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhhhhhcccccCcccHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 011223344555443 44 899999999999988866554443
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-10 Score=109.92 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=78.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+. .+.++.+.. ...+...+..+.+|||||.++ ...+...+.+....+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~-- 96 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG--QHVPTLHPT--SEELTIAGMTFTTFDLGGHIQ-ARRVWKNYLPAINGI-- 96 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCS--CEEEEETTEEEEEEEECC-----CCGGGGGGGGCSEE--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCCCce--eEEEEECCEEEEEEECCCcHh-hHHHHHHHHhcCCEE--
Confidence 3467999999999999999999987543 232222221 122333446788999999533 222222221111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++-+ +.+.+.+..+..++.+ +........+|+++|+||+|. ..
T Consensus 97 ------------i~v~D--~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~NK~Dl--~~-- 140 (198)
T 1f6b_A 97 ------------VFLVD--CADHERLLESKEELDS------------------LMTDETIANVPILILGNKIDR--PE-- 140 (198)
T ss_dssp ------------EEEEE--TTCGGGHHHHHHHHHH------------------HHTCGGGTTSCEEEEEECTTS--TT--
T ss_pred ------------EEEEE--CCCHHHHHHHHHHHHH------------------HHhCcccCCCcEEEEEECCCc--cc--
Confidence 11110 1111111111111111 111111247899999999954 22
Q ss_pred cchHHHHHHHHHhc---------------CCCCeEEeechhhhhhhCCCCH
Q psy17315 403 NKWLPKIKEWVDAN---------------DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---------------~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
....+++.+++... ..+.+++++||++|.|++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 191 (198)
T 1f6b_A 141 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 191 (198)
T ss_dssp CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHH
T ss_pred cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHH
Confidence 22345565555421 1245799999999999877643
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-10 Score=106.16 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=75.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+. ... .+.. ....+.+|||||.++ +..+...+.+....+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT-VFD--NFSANVVVNGATVNLGLWDTAGQED-YNRLRPLSYRGADVF 83 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC-------CEEECCCC-CT-TTTTGGGGGTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCe-eee--eEEEEEEECCEEEEEEEEECCCChh-hhhhHHhhccCCCEE
Confidence 468999999999999999999987654332221 111 111 1222 224567999999532 221111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
.++- ++.+.+.+..+. .++ ..+.... ...|+++|+||+|. .
T Consensus 84 --------------i~v~--d~~~~~s~~~~~~~~~------------------~~~~~~~--~~~piilv~nK~Dl--~ 125 (182)
T 3bwd_D 84 --------------ILAF--SLISKASYENVSKKWI------------------PELKHYA--PGVPIVLVGTKLDL--R 125 (182)
T ss_dssp --------------EEEE--ETTCHHHHHHHHHTHH------------------HHHHHHC--TTCCEEEEEECHHH--H
T ss_pred --------------EEEE--ECCCHHHHHHHHHHHH------------------HHHHHhC--CCCCEEEEEechhh--h
Confidence 1111 112222222221 111 1122111 37899999999954 3
Q ss_pred hhcc----------chHHHHHHHHHhcCCC-CeEEeechhhhhhhCCCCHHH
Q psy17315 400 KKKN----------KWLPKIKEWVDANDPG-ATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ~~~~----------~~~~~l~~~~~~~~~~-~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.... ...++..++.... + .+++++||++|.|+.++.+..
T Consensus 126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 126 DDKQFFIDHPGAVPITTVQGEELKKLI--GAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp TCHHHHHHC--CCCCCHHHHHHHHHHH--TCSEEEECCTTTCTTHHHHHHHH
T ss_pred cCcccccccccCCCCCHHHHHHHHHHc--CCCEEEEEECCCCCCHHHHHHHH
Confidence 2111 1233444554443 4 489999999999988775443
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.3e-11 Score=112.32 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=82.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh---HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN---EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~---~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+++..+. ..+..+.++......+...+ ..+.+|||||.++ ...+...+......+
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK-KAVLKDVYYIGASGA 88 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGG-TSCCCHHHHTTCSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchh-hchHHHHHhhcCCEE
Confidence 468999999999999999999977554 23333333321111111111 3588999999532 111111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+ ++- ++.+......+..|+. .+..... ..+|+++|+||+|. ..
T Consensus 89 i--------------~v~--d~~~~~s~~~~~~~~~------------------~~~~~~~-~~~piilv~nK~Dl--~~ 131 (218)
T 4djt_A 89 I--------------LFF--DVTSRITCQNLARWVK------------------EFQAVVG-NEAPIVVCANKIDI--KN 131 (218)
T ss_dssp E--------------EEE--ETTCHHHHHTHHHHHH------------------HHHHHHC-SSSCEEEEEECTTC--C-
T ss_pred E--------------EEE--eCCCHHHHHHHHHHHH------------------HHHHhcC-CCCCEEEEEECCCC--cc
Confidence 1 111 1111122221212211 1222211 35899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+.+.+++... +.+++++||++|.|++++.+...+
T Consensus 132 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 132 RQKISKKLVMEVLKGK--NYEYFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp ---CCHHHHHHHTTTC--CCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHH
Confidence 2223334444554443 678999999999999888554433
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-10 Score=106.78 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=63.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh--ccCCCcccccCCccccc-cchhhh----hHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR--AFEDDDVTHVEGEVNPV-RDIEII----NEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~--~~~~~~v~~~~gt~dp~-~~~~~~----~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
..+|.+.|.+|+|||+|++.+.+. .+.... .++.| .+.. ..+... ...+.+|||||.++ +..+...+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-~~t~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 96 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDY-AMTSG-VEVVVAPVTIPDTTVSVELFLLDTAGSDL-YKEQISQYWNG 96 (208)
T ss_dssp EEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHH-HHHHHSTTCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCC-CCccc-eEEEEEEEEECCcccEEEEEEEECCCcHH-HHHHHHHHHhh
Confidence 357999999999999999999987 443222 22112 1111 122222 33688999999654 33333332222
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh--ccCCceEEEecCC
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL--LTAKTQIYLVNLS 394 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~--l~~kP~iiv~NK~ 394 (561)
...++..+ ++.+...+..+..++.. +..... ....|+++|+||+
T Consensus 97 ~d~~i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~piilv~nK~ 142 (208)
T 2yc2_C 97 VYYAILVF----------------DVSSMESFESCKAWFEL------------------LKSARPDRERPLRAVLVANKT 142 (208)
T ss_dssp CCEEEEEE----------------ETTCHHHHHHHHHHHHH------------------HHHHCSCTTSCCEEEEEEECC
T ss_pred CcEEEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhhcccccCCcEEEEEECc
Confidence 22111111 12222333333333222 111111 1378999999999
Q ss_pred hhhhhh-hccchHHHHHHHHHhcCCCCeEEeechhh-hhhhCCCCHHHHHHHHH
Q psy17315 395 AKDYIK-KKNKWLPKIKEWVDANDPGATIIPFSGVF-EHQLVDMPDDERQRYLD 446 (561)
Q Consensus 395 D~d~~~-~~~~~~~~l~~~~~~~~~~~~vi~iSA~~-~~gl~~L~~~~~~~~~~ 446 (561)
|. .. ......+++.+++... +.+++++||++ +.|+.++.+.....+.+
T Consensus 143 Dl--~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 143 DL--PPQRHQVRLDMAQDWATTN--TLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp ---------CCCHHHHHHHHHHT--TCEEEECCC-------CHHHHHHHHHHHH
T ss_pred cc--chhhccCCHHHHHHHHHHc--CCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 54 32 2233345666666655 67899999999 99999987776655443
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-10 Score=123.84 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCcccc----------------------------------
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPNENN---------------------------------- 137 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~~~~---------------------------------- 137 (561)
..++|+++|.+|||||||+|+|++... .+++.|++|+......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 457899999999999999999999884 5788887765211000
Q ss_pred ---ccC----CeEEEEeCCCcccCCcc--cccc--ccccccccccCCEEEEEeccc
Q psy17315 138 ---KVP----AFLNVVDIAGLVKGAAE--GQGL--GNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 138 ---~~~----~~i~l~DtpG~~~~~~~--~~~~--~~~~l~~i~~~D~il~VvD~~ 182 (561)
..+ .++.||||||+..+... ...+ .......++.+|++++|+|++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~ 199 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAH 199 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETT
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCC
Confidence 000 36899999999863321 1111 122234568899999999885
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.4e-10 Score=121.41 Aligned_cols=150 Identities=19% Similarity=0.077 Sum_probs=85.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--Cc-----------------------c------cCCCcccccCcccc--ccCCe
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AA-----------------------A------ENFPFCTIDPNENN--KVPAF 142 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~-----------------------~------~~~~~~T~~~~~~~--~~~~~ 142 (561)
.++|+++|.+|+|||||+|+|++.. .. + ...+|.|.+..... .....
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4789999999999999999998641 00 0 01256676654332 12347
Q ss_pred EEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchh--hhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIF--FISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
+.++||||... +.......++.+|++++|+|++..... +.. .....+.+. .+..+..+ ++|
T Consensus 87 ~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~--~~qt~~~~~----~~~~~~v~~iivviN 153 (458)
T 1f60_A 87 VTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVGEFEAGISK--DGQTREHAL----LAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT--TSHHHHHHH----HHHHTTCCEEEEEEE
T ss_pred EEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCc--chhHHHHHH----HHHHcCCCeEEEEEE
Confidence 99999999642 222345567899999999998632100 000 001111111 12222222 799
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKS 258 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks 258 (561)
|+|+....... ......+..+..... ..+.+.+||++|.|+.
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 99997311000 001122333333333 2578999999999975
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-10 Score=105.34 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=83.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh---HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN---EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~---~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .| .+.. ..+...+ ..+.+|||||.++ +..+...+.+....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t-~~-~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT-IG-LDFFLRRITLPGNLNVTLQIWDIGGQTI-GGKMLDKYIYGAQG 82 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHT-TT-SSEEEEEEEETTTEEEEEEEEECTTCCT-TCTTHHHHHTTCSE
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCc-ee-EEEEEEEEEeCCCCEEEEEEEECCCCcc-ccchhhHHHhhCCE
Confidence 357999999999999999999988654222222 12 1111 1222222 4688999999532 22222222222221
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCc-eEEEecCChhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKT-QIYLVNLSAKD 397 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP-~iiv~NK~D~d 397 (561)
++..+ ++.+.+.+..+..++.. +..... ....| +++|+||+|.
T Consensus 83 ~i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~~iilv~nK~Dl- 127 (178)
T 2hxs_A 83 VLLVY----------------DITNYQSFENLEDWYTV------------------VKKVSEESETQPLVALVGNKIDL- 127 (178)
T ss_dssp EEEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHHHHHTCCCEEEEEEECGGG-
T ss_pred EEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHHhcccCCCCeEEEEEEcccc-
Confidence 11111 11222222222222221 111110 02456 7899999954
Q ss_pred hhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
........+.+.+++... +.+++++||++|.|+.++.+...
T Consensus 128 -~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 168 (178)
T 2hxs_A 128 -EHMRTIKPEKHLRFCQEN--GFSSHFVSAKTGDSVFLCFQKVA 168 (178)
T ss_dssp -GGGCSSCHHHHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHH
T ss_pred -ccccccCHHHHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHH
Confidence 322222344555555544 57899999999999887755443
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-10 Score=116.09 Aligned_cols=152 Identities=22% Similarity=0.251 Sum_probs=84.6
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhc------CC-CcccCCCccc-----------------------------------
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTK------SS-AAAENFPFCT----------------------------------- 130 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~------~~-~~~~~~~~~T----------------------------------- 130 (561)
...+..++++|.||||||||+|+|++ .. .-.+..|+.+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35667899999999999999999984 22 1112122221
Q ss_pred --ccCccc----cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHH
Q psy17315 131 --IDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLE 204 (561)
Q Consensus 131 --~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~ 204 (561)
++.... ...+.++.|+||||+..+.. .....+|++++|+|+...+. ++.+.
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~----------~v~~~~d~vl~v~d~~~~~~-------------~~~i~ 188 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET----------AVADLTDFFLVLMLPGAGDE-------------LQGIK 188 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH----------HHHTTSSEEEEEECSCC-------------------CC
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh----------hHHhhCCEEEEEEcCCCccc-------------HHHHH
Confidence 111100 01255799999999964321 11367899999998642110 00000
Q ss_pred HHHHHhcc-hhhccccccCcCCCCCccHHHHHHHhhhcC------CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 205 TRIRDLRR-SVDAKADSKKKMGPKKTDEGEKKMLLGRVG------TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 205 ~~l~~~~~-~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~------~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+... .+.||+|+.............+........ ..+.+.+||+++.|+..|++.|.+.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 01112111 267999975211000000111222222222 3467889999999999999999875
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.95 E-value=7.4e-11 Score=119.65 Aligned_cols=159 Identities=21% Similarity=0.245 Sum_probs=90.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhhhHhhhcccHHHHH-HHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EIINEELRLKDVEHIE-KEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~~~el~l~Dt~Gi~-~~~~~l~~~~~~~~~~~~ 321 (561)
..+++.|.+|+|||||+|+|++..+. .++..++++ +....+ ...+..+.+|||||+. +....+...+........
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~--i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKIS--ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEE--ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 47999999999999999999997532 233344554 222222 2234578899999986 444444433322221111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+|++..|++ . ..++..+..++..+.. ..+|+++|+||+|. ...
T Consensus 87 ---------------------~~~D~vl~Vvd------~-----~~~~~~~~~i~~~l~~-~~~P~ilvlNK~D~--~~~ 131 (301)
T 1ega_A 87 ---------------------GDVELVIFVVE------G-----TRWTPDDEMVLNKLRE-GKAPVILAVNKVDN--VQE 131 (301)
T ss_dssp ---------------------CCEEEEEEEEE------T-----TCCCHHHHHHHHHHHS-SSSCEEEEEESTTT--CCC
T ss_pred ---------------------hcCCEEEEEEe------C-----CCCCHHHHHHHHHHHh-cCCCEEEEEECccc--Ccc
Confidence 11133221111 0 0133444444433322 47999999999954 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....+.+.++.+.. ...+++++||+++.|+.+|.+...
T Consensus 132 ~~~~~~~l~~l~~~~-~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 132 KADLLPHLQFLASQM-NFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHHHTTS-CCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CcCceEEEECCCCCCHHHHHHHHH
Confidence 122334444444332 234799999999999888765543
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-10 Score=110.78 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=82.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+||++|++.+.+..+.....+++.-+. ....+...+ ..+.+|||||.++ +..+...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~---- 86 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEF-ATRTLEIEGKRIKAQIWDTAGQER-YRAITSAYYRGA---- 86 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSE-EEEEEEETTEEEEEEEECCTTTTT-TTCCCGGGTTTC----
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEEECCEEEEEEEEECCCccc-hhhhHHHHhccC----
Confidence 36799999999999999999999865543333221111 011222222 4688999999432 211111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
|...++- ++.+.+.+..+..|+.. +.... ....|+++|+||+|. ...
T Consensus 87 ----------d~vilV~--D~~~~~s~~~~~~~l~~------------------i~~~~-~~~~piilv~nK~Dl--~~~ 133 (223)
T 3cpj_B 87 ----------VGALIVY--DISKSSSYENCNHWLSE------------------LRENA-DDNVAVGLIGNKSDL--AHL 133 (223)
T ss_dssp ----------CEEEEEE--C-CCHHHHHHHHHHHHH------------------HHHHC-C--CEEEEEECCGGG--GGG
T ss_pred ----------CEEEEEE--eCCCHHHHHHHHHHHHH------------------HHHhC-CCCCeEEEEEECccc--ccc
Confidence 1111111 12222333322222221 11111 136899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....+.+.+++... +.+++++||+++.|++++.+.....
T Consensus 134 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 134 RAVPTEESKTFAQEN--QLLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 233344555665554 6789999999999998775554433
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-10 Score=105.87 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=82.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+.. ...+.++.|.. ...+...+..+.+|||||.++ +..+...+.+....+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~i-- 89 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISPTLGFN--IKTLEHRGFKLNIWDVGGQKS-LRSYWRNYFESTDGL-- 89 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCCCSSEE--EEEEEETTEEEEEEEECCSHH-HHTTGGGGCTTCSEE--
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccccCccc--eEEEEECCEEEEEEECCCCHh-HHHHHHHHhcCCCEE--
Confidence 45789999999999999999999875 33333332321 122333456788999999644 222222221111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++-+ +.+.+.+..+..++.. +.........|+++|+||+|. ..
T Consensus 90 ------------i~v~d--~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~nK~Dl--~~-- 133 (186)
T 1ksh_A 90 ------------IWVVD--SADRQRMQDCQRELQS------------------LLVEERLAGATLLIFANKQDL--PG-- 133 (186)
T ss_dssp ------------EEEEE--TTCGGGHHHHHHHHHH------------------HHTCGGGTTCEEEEEEECTTS--TT--
T ss_pred ------------EEEEE--CcCHHHHHHHHHHHHH------------------HHhChhcCCCcEEEEEeCccC--CC--
Confidence 11110 1111111111111111 111111247899999999954 32
Q ss_pred cchHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+.+.. ...+.+++++||+++.|++++.+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 134 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 1223444443321 01256899999999999888755443
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=120.46 Aligned_cols=151 Identities=16% Similarity=0.100 Sum_probs=88.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc---------c------cCCCcccccCcccc--cc-----CCeEEEEeCCCcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA---------A------ENFPFCTIDPNENN--KV-----PAFLNVVDIAGLVKG 154 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~---------~------~~~~~~T~~~~~~~--~~-----~~~i~l~DtpG~~~~ 154 (561)
.+|+++|.+|+|||||+++|+..... + ....|.|....... +. ...+.||||||....
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 57999999999999999999753210 0 11245565433221 11 136889999998643
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccH
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~ 231 (561)
.. .....++.+|++++|+|++... ... ....+.. ......+ +.||+|+.... ..
T Consensus 87 ~~-------ev~r~l~~aD~aILVVDa~~gv-------~~q---t~~~~~~-a~~~~ipiIvviNKiDl~~a~-----~~ 143 (600)
T 2ywe_A 87 SY-------EVSRALAACEGALLLIDASQGI-------EAQ---TVANFWK-AVEQDLVIIPVINKIDLPSAD-----VD 143 (600)
T ss_dssp HH-------HHHHHHHTCSEEEEEEETTTBC-------CHH---HHHHHHH-HHHTTCEEEEEEECTTSTTCC-----HH
T ss_pred HH-------HHHHHHHhCCEEEEEEECCCCc-------cHH---HHHHHHH-HHHCCCCEEEEEeccCccccC-----HH
Confidence 32 2334568899999999986321 011 1111111 1122222 89999997431 12
Q ss_pred HHHHHHhhhcCC--CcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 232 GEKKMLLGRVGT--NLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 232 ~~l~~l~~~~~~--~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.....+...+.. ...+.+||++|.|+..|++++.+..+.
T Consensus 144 ~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 144 RVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 223334333322 247999999999999999999987643
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-10 Score=107.14 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=82.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .|.. ...+...+..+.+|||||.++ +..+...+.+....++..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~--~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPT-VGFN--MRKITKGNVTIKLWDIGGQPR-FRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC-CSEE--EEEEEETTEEEEEEEECCSHH-HHTTHHHHHTTCSEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCC-Ccee--EEEEEeCCEEEEEEECCCCHh-HHHHHHHHHccCCEEEEE
Confidence 467999999999999999999988655333222 2221 112233345788999999654 333333333222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.. +.........|+++|+||+|. .. .
T Consensus 98 ~----------------D~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~NK~Dl--~~--~ 139 (188)
T 1zd9_A 98 V----------------DAADQEKIEASKNELHN------------------LLDKPQLQGIPVLVLGNKRDL--PG--A 139 (188)
T ss_dssp E----------------ETTCGGGHHHHHHHHHH------------------HHTCGGGTTCCEEEEEECTTS--TT--C
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHhCcccCCCCEEEEEECCCC--cc--C
Confidence 1 01111112222222111 111111247899999999954 32 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+++.+.+... ..+.+++++||++|.|++++.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 140 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179 (188)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHH
Confidence 1123333322210 124578999999999987775443
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.8e-11 Score=111.39 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=84.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+.+ +.. ....+.. ....+.+|||||.++ +..+...+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~------- 98 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDN-YSANVMVDGKPVNLGLWDTAGQED-YDRLRPLS------- 98 (204)
Confidence 34679999999999999999999876543322221 111 0111222 224567999999643 22222111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~ 399 (561)
+..++++..|.+.... .. +......++..+.. ...+|+++|+||+|....
T Consensus 99 ---------------------~~~~d~iilv~D~~~~--~s------~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 99 ---------------------YPQTDVFLICFSLVSP--AS------FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 1223666666664332 00 11100011111111 126899999999964211
Q ss_pred hhc----------cchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHH
Q psy17315 400 KKK----------NKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 400 ~~~----------~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~ 441 (561)
... ....+...++++.. +. +++++||++|.|++++.+...
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 000 11112222333322 33 789999999999999866543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-10 Score=111.83 Aligned_cols=151 Identities=15% Similarity=0.211 Sum_probs=83.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHHHHH-----HHHHHHHhhC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIEKEI-----NKIEKLVQRG 316 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~~~~-----~~l~~~~~~~ 316 (561)
..+|.+.|.+|+|||+|+|.+++..+..++++ |+ +++.. .+.. +..+.+|||||.++.. +.+...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p---g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP---GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS---CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC---CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35799999999999999999998765444443 44 33332 2333 5678999999964310 1222222211
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
.. + +++..|++.. . .+....++..+.. .++|+++|+||+|.
T Consensus 79 ~~------------~--------------d~vi~V~D~t-----------~-~e~~~~~~~~l~~-~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 79 QR------------A--------------DSILNVVDAT-----------N-LERNLYLTTQLIE-TGIPVTIALNMIDV 119 (272)
T ss_dssp TC------------C--------------SEEEEEEEGG-----------G-HHHHHHHHHHHHH-TCSCEEEEEECHHH
T ss_pred CC------------C--------------CEEEEEecCC-----------c-hHhHHHHHHHHHh-cCCCEEEEEEChhh
Confidence 00 0 1100000000 0 0011111111211 47999999999965
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
..........+.+.+.+ +.+++++||++|.|+++|.+....
T Consensus 120 ~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 120 LDGQGKKINVDKLSYHL-----GVPVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp HHHTTCCCCHHHHHHHH-----TSCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHc-----CCCEEEEEccCCCCHHHHHHHHHH
Confidence 32211122233443332 678999999999999888665543
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.8e-10 Score=105.06 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=82.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC-CCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE-DDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~-~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.+|.+.|.+|+|||+|++++++.... ...++++ |. +.. ..+.+.+ ..+.+|||+|.......+...+.+.....
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVL-GE-DTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGG-CT-TEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCcccccc-ce-eEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 57999999999999999999975321 1222221 21 111 1222222 34678999885431111111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+.+.+..+..+... +.......+.|+++|.||+|. ..
T Consensus 85 i~v~----------------dv~~~~s~~~~~~~~~~------------------l~~~~~~~~~piilV~NK~Dl--~~ 128 (192)
T 2cjw_A 85 LIVY----------------SITDRASFEKASELRIQ------------------LRRARQTEDIPIILVGNKSDL--VR 128 (192)
T ss_dssp EEEE----------------ETTCHHHHHHHHHHHHH------------------HHHHTTTSCCCEEEEEECTTC--GG
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhhCCCCCeEEEEEechhh--hc
Confidence 1111 22333443333222211 222211136899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+....+.... +.+++++||++|.|+.++.+.....+.
T Consensus 129 ~r~v~~~~~~~~a~~~--~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 129 XREVSVSEGRAXAVVF--DXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh--CCceEEeccccCCCHHHHHHHHHHHHH
Confidence 2222233333343333 568999999999999998777665543
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-10 Score=119.34 Aligned_cols=155 Identities=16% Similarity=0.120 Sum_probs=92.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc----------------ccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA----------------AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~----------------~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~ 157 (561)
.++|+++|.+|+|||||+|+|++.... .....|.|.+...... ....+.++||||.....
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~-- 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV-- 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH--
Confidence 478999999999999999999874200 0113456655432211 23579999999985321
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHH
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGE 233 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~ 233 (561)
......++.+|++++|+|++... .....+.+. .+.....+ ++||+|+......-.....+
T Consensus 81 -----~~~~~~~~~aD~~ilVvda~~g~-------~~qt~e~l~----~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~ 144 (397)
T 1d2e_A 81 -----KNMITGTAPLDGCILVVAANDGP-------MPQTREHLL----LARQIGVEHVVVYVNKADAVQDSEMVELVELE 144 (397)
T ss_dssp -----HHHHHTSSCCSEEEEEEETTTCS-------CHHHHHHHH----HHHHTTCCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred -----HHHHhhHhhCCEEEEEEECCCCC-------CHHHHHHHH----HHHHcCCCeEEEEEECcccCCCHHHHHHHHHH
Confidence 22345578899999999986321 111112221 22222222 79999997411000001122
Q ss_pred HHHHhhhcC----CCcEEEEEccCCCC----------HHHHHHHHHhhc
Q psy17315 234 KKMLLGRVG----TNLKVGIVGVPNVG----------KSTFFNVLTKRA 268 (561)
Q Consensus 234 l~~l~~~~~----~~~~i~isg~~~~G----------ks~l~~~l~~~~ 268 (561)
+..+..... ..+.+.+||++|.| +..|+++|.+..
T Consensus 145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 333333332 35789999999763 789999998754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-10 Score=105.77 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=89.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCc---------ccccCCc-ccccc--chhhhhHhhhcccHHHHHHHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDD---------VTHVEGE-VNPVR--DIEIINEELRLKDVEHIEKEINKIEK 311 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~---------v~~~~gt-~dp~~--~~~~~~~el~l~Dt~Gi~~~~~~l~~ 311 (561)
..+|.+.|.+|+||++|++.+.+....... ..++.|. ..... .+......+.+|||||.++ +..+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~ 92 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF-YNASRK 92 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS-CSHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH-HHHHHH
Confidence 357999999999999999988876422110 0000010 00000 1111234688999999432 334444
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCC------hHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCC
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIG------HEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~------~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~k 385 (561)
.+.+....++..+ ++. ..+.+..+..|+.+ . . ......
T Consensus 93 ~~~~~~d~~i~v~----------------D~~~~~~~~~~~s~~~l~~~l~~--~----------------~--~~~~~~ 136 (198)
T 3t1o_A 93 LILRGVDGIVFVA----------------DSAPNRLRANAESMRNMRENLAE--Y----------------G--LTLDDV 136 (198)
T ss_dssp HHTTTCCEEEEEE----------------ECCGGGHHHHHHHHHHHHHHHHH--T----------------T--CCTTSS
T ss_pred HHHhcCCEEEEEE----------------ECCcchhhHhHHHHHHHHHHHHh--h----------------c--cccCCC
Confidence 4433332221111 111 22333333333332 0 0 011478
Q ss_pred ceEEEecCChhhhhhhccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 386 P~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
|+++|+||+|. .. ....+++.++++.. +. +++++||++|.|+.++.+...+...+
T Consensus 137 piilv~NK~Dl--~~--~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 137 PIVIQVNKRDL--PD--ALPVEMVRAVVDPE--GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CEEEEEECTTS--TT--CCCHHHHHHHHCTT--CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CEEEEEEchhc--cc--ccCHHHHHHHHHhc--CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 99999999954 32 24456666776654 55 89999999999998886665554433
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-10 Score=104.55 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=81.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+. .+.++.|.. ...+...+..+.+|||||.++ +..+...+.+....++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HTSPTIGSN--VEEIVINNTRFLMWDIGGQES-LRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EEECCSCSS--CEEEEETTEEEEEEECCC-----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCCccc--eEEEEECCEEEEEEECCCCHh-HHHHHHHHhcCCCEEEE
Confidence 4578999999999999999999977554 232222321 122333456789999999643 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ + +.+.+.+..+..++.. +.........|+++|+||+|. ..
T Consensus 90 v~--------------d--~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~NK~Dl--~~-- 131 (187)
T 1zj6_A 90 VV--------------D--STDRERISVTREELYK------------------MLAHEDLRKAGLLIFANKQDV--KE-- 131 (187)
T ss_dssp EE--------------E--TTCTTTHHHHHHHHHH------------------HHTSGGGTTCEEEEEEECTTS--TT--
T ss_pred EE--------------e--CCCHHHHHHHHHHHHH------------------HHhchhhCCCeEEEEEECCCC--cC--
Confidence 11 0 0111111111111111 111111247899999999954 32
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+.+... ..+.+++++||++|.|++++.+...
T Consensus 132 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 132 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 11233444443211 1246899999999999887755443
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-10 Score=130.44 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=90.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccc--------------------------------------
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNEN-------------------------------------- 136 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~-------------------------------------- 136 (561)
.++|+++|.+|+|||||+|+|+|... +.+.- .+|+.+...
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 36899999999999999999999873 33322 344322100
Q ss_pred --------------c--ccCCeEEEEeCCCcccCCcc--c----ccccccccccc-ccCCEEEEEecccccchhhhccch
Q psy17315 137 --------------N--KVPAFLNVVDIAGLVKGAAE--G----QGLGNAFLSHI-SACDAIFHLCKEKLRNIFFISLNT 193 (561)
Q Consensus 137 --------------~--~~~~~i~l~DtpG~~~~~~~--~----~~~~~~~l~~i-~~~D~il~VvD~~~~~~~~~~~~~ 193 (561)
. ....++.|+||||+...... . ..+......++ ..+|++++|+|++..-
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~-------- 201 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL-------- 201 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCS--------
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCc--------
Confidence 0 01235889999999863211 0 11111112222 6789999999876210
Q ss_pred hhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH-Hhh-hcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 194 ITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM-LLG-RVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 194 ~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~-l~~-~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.... ...+.+++.....+ |.||+|+.+..... ...... ... ..+....+.+|+.+|.|+.+|++++.+.
T Consensus 202 -~~~d-~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~---~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 202 -ANSD-ALKIAKEVDPQGQRTIGVITKLDLMDEGTDA---RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp -SSCH-HHHHHHHHCTTCSSEEEEEECTTSSCTTCCS---HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred -chhH-HHHHHHHHHhcCCCEEEEEeCcccCCcchhh---HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 0000 00122233333333 89999998543321 111110 000 0123357889999999999999999873
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-10 Score=104.73 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=37.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+.........+......+.+|||||.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 57999999999999999999987654333322211110001111222457799999963
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-10 Score=109.16 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=85.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+.. .....+......+.+|||+|.++ +..+...+.+....++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPT-VFENYTACLETEEQRVELSLWDTSGSPY-YDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC-SEEEEEEEEEC--CEEEEEEEEECCSGG-GTTTGGGGCTTCSEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCe-eeeeEEEEEEECCEEEEEEEEECCCCHh-HHHHHHHHcCCCeEEEE
Confidence 468999999999999999999998654333222 1211 00011222234688999999532 22222222211111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHH-HHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh--
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVK-IKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI-- 399 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~-v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~-- 399 (561)
.+ ++.+.+.+.. +..|+.. +.... ...|+++|+||+|....
T Consensus 105 v~----------------d~~~~~s~~~~~~~~~~~------------------i~~~~--~~~piilv~nK~Dl~~~~~ 148 (214)
T 3q3j_B 105 CF----------------DISRPETVDSALKKWRTE------------------ILDYC--PSTRVLLIGCKTDLRTDLS 148 (214)
T ss_dssp EE----------------ETTCTHHHHHHHTHHHHH------------------HHHHC--TTSEEEEEEECGGGGGCHH
T ss_pred EE----------------ECcCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEEChhhccchh
Confidence 11 1122233222 1122111 22111 37899999999964210
Q ss_pred --------hhccchHHHHHHHHHhcCCCC-eEEeechhhhhh-hCCCCHHHHHH
Q psy17315 400 --------KKKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQ-LVDMPDDERQR 443 (561)
Q Consensus 400 --------~~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~g-l~~L~~~~~~~ 443 (561)
.......+...+++... +. +++.+||++|.| +.++.+.....
T Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 149 TLMELSHQKQAPISYEQGCAIAKQL--GAEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHH--TCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCccCHHHHHHHHHHc--CCCEEEEeccCCCcccHHHHHHHHHHH
Confidence 00123344555555554 55 899999999998 98886655443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.5e-10 Score=115.05 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=22.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
++|++||.+|||||||+|+|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999976
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-10 Score=106.76 Aligned_cols=57 Identities=35% Similarity=0.362 Sum_probs=37.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi 302 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ +. +-...+... ...+.+|||||.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~l~i~Dt~G~ 83 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FE-NYIADIEVDGKQVELALWDTAGQ 83 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS-CC-CCEEEEEETTEEEEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc-cc-eEEEEEEECCEEEEEEEEECCCc
Confidence 3579999999999999999999986543332221 11 111112222 236889999995
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-10 Score=112.75 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=82.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHHHHH---------HHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIEKEI---------NKIEKLV 313 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~~~~---------~~l~~~~ 313 (561)
.+|.+.|.+|+|||+|+|++++..+. +...+|+ +++.. .+...+..+.+|||||+.... +.+.+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~---v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQR---VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEE---EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcc---cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 57999999999999999999998643 3334454 34433 234445678899999964311 0111111
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
... ..+|++..|++.. . .+.....+..+.. .+.|+++|+||
T Consensus 81 ~~~--------------------------~~~d~ii~VvD~~-----------~-~~~~~~~~~~l~~-~~~p~ivv~NK 121 (274)
T 3i8s_A 81 ILS--------------------------GDADLLINVVDAS-----------N-LERNLYLTLQLLE-LGIPCIVALNM 121 (274)
T ss_dssp HHH--------------------------TCCSEEEEEEEGG-----------G-HHHHHHHHHHHHH-HTCCEEEEEEC
T ss_pred Hhh--------------------------cCCCEEEEEecCC-----------C-hHHHHHHHHHHHh-cCCCEEEEEEC
Confidence 000 0001111111100 0 0112222222222 47999999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
+|...........+.+.+.+ +.+++++||++|.|+++|.+..
T Consensus 122 ~Dl~~~~~~~~~~~~l~~~l-----g~~~i~~SA~~g~gi~el~~~i 163 (274)
T 3i8s_A 122 LDIAEKQNIRIEIDALSARL-----GCPVIPLVSTRGRGIEALKLAI 163 (274)
T ss_dssp HHHHHHTTEEECHHHHHHHH-----TSCEEECCCGGGHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHhc-----CCCEEEEEcCCCCCHHHHHHHH
Confidence 96432211122344444433 6789999999999998875544
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=100.47 Aligned_cols=56 Identities=30% Similarity=0.484 Sum_probs=37.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
.++.+.|.+|+|||+|++.+++..+..+.++ ++ +++.. .+...+..+.+|||||.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWP---GVTVEKKEGEFEYNGEKFKVVDLPGVY 61 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC--------CCCCCEEEEEETTEEEEEEECCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCC---CcceeeeEEEEEECCcEEEEEECCCcc
Confidence 5799999999999999999998765444433 32 23322 223334578899999964
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-10 Score=120.13 Aligned_cols=146 Identities=15% Similarity=0.037 Sum_probs=80.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-----------CcccCCCcccc----------------------cCcccc--ccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-----------AAAENFPFCTI----------------------DPNENN--KVP 140 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-----------~~~~~~~~~T~----------------------~~~~~~--~~~ 140 (561)
.++|+++|.+|+|||||+|+|++.. ...+..+|+|. +..... ...
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4789999999999999999998653 11223344432 211111 123
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~N 216 (561)
..+.++||||..... ......++.+|++++|+|++... .....+.+. .+..+.. + ++|
T Consensus 104 ~~~~iiDtpGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~-------~~qt~~~l~----~~~~~~~~~iIvviN 165 (434)
T 1zun_B 104 RKFIIADTPGHEQYT-------RNMATGASTCDLAIILVDARYGV-------QTQTRRHSY----IASLLGIKHIVVAIN 165 (434)
T ss_dssp EEEEEEECCCSGGGH-------HHHHHHHTTCSEEEEEEETTTCS-------CHHHHHHHH----HHHHTTCCEEEEEEE
T ss_pred ceEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHH----HHHHcCCCeEEEEEE
Confidence 468999999964322 22344578999999999986321 011111111 1222222 2 799
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~ 259 (561)
|+|+....... ......+..+..... ..+.+.+||++|.|+..
T Consensus 166 K~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 99997421000 001122333333332 24679999999999875
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=115.18 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=81.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--Cc-----------------------------ccCCCcccccCcccc--ccCCe
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AA-----------------------------AENFPFCTIDPNENN--KVPAF 142 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~-----------------------------~~~~~~~T~~~~~~~--~~~~~ 142 (561)
.++|+++|.+|+|||||+|+|++.. .. ....+|+|.+..... .....
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 4789999999999999999998641 10 011356777654322 23457
Q ss_pred EEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccc
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKA 218 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~ 218 (561)
+.+|||||..... ......++.+|++++|+|++...... ......+.......+..+.. + ++||+
T Consensus 86 ~~iiDtpG~~~f~-------~~~~~~~~~aD~~ilVvDa~~gsfe~----~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 86 FTIIDAPGHRDFV-------KNMITGASQADAAILVVSAKKGEYEA----GMSVEGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp EEECCCSSSTTHH-------HHHHHTSSCCSEEEEEEECSTTHHHH----HHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred EEEEECCCcHHHH-------HHHHhhhhhcCEEEEEEECCCCcccc----ccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 9999999975432 22455678999999999986311000 00001111111112222232 2 79999
Q ss_pred cccCcCCCC---CccHHHHHHHhhhcC----CCcEEEEEccCCCCHH
Q psy17315 219 DSKKKMGPK---KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKS 258 (561)
Q Consensus 219 D~~~~~~~~---~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks 258 (561)
|+....... .....++..+..... ..+.+.+||++|.|+.
T Consensus 155 Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 155 DLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp GGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 997521100 001122333333332 2568999999999986
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-10 Score=105.82 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=83.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+....+.++.+.. ...+...+..+.+|||||.++ +..+...+.+....+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~i-- 94 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSSLSFTVFDMSGQGR-YRNLWEHYYKEGQAI-- 94 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSSCEEEEEEECCSTT-TGGGGGGGGGGCSEE--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECCEEEEEEECCCCHH-HHHHHHHHHhcCCEE--
Confidence 346899999999999999999998863223333322321 122333346789999999532 222221111111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhc--cCCceEEEecCChhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLL--TAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l--~~kP~iiv~NK~D~d~~~ 400 (561)
.++- ++.+.+.+..+..++.. +...... ..+|+++|+||+|. ..
T Consensus 95 ------------i~v~--d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~~piilv~nK~Dl--~~ 140 (190)
T 2h57_A 95 ------------IFVI--DSSDRLRMVVAKEELDT------------------LLNHPDIKHRRIPILFFANKMDL--RD 140 (190)
T ss_dssp ------------EEEE--ETTCHHHHHHHHHHHHH------------------HHHSTTTTTSCCCEEEEEECTTS--TT
T ss_pred ------------EEEE--ECCCHHHHHHHHHHHHH------------------HHhChhhccCCCeEEEEEeCcCc--cc
Confidence 1111 11112222222222211 1111111 36899999999954 32
Q ss_pred hccchHHHHHHHHH--hc-CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 401 KKNKWLPKIKEWVD--AN-DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 401 ~~~~~~~~l~~~~~--~~-~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+++.+.+. .. ..+.+++++||++|.|++++.+..
T Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 141 --AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp --CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred --CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence 222345555442 11 125689999999999988775443
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=8e-10 Score=100.26 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=81.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+|||+|++.+.+..+.. ..+ +.+.. ...+...+..+.+|||||.++ +..+...+.+....++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-~~~-t~~~~--~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~i~v~- 75 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIP-TIGFN--VETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVV- 75 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-CCC-CSSCC--EEEEECSSCEEEEEECCCCGG-GHHHHHHHTTTCSEEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-ccC-cCcee--EEEEEECCEEEEEEEcCCChh-hHHHHHHHhccCCEEEEEE-
Confidence 68999999999999999999886542 222 11211 112333445788999999643 4444444333222221111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
++.+.+.+..+..++.. +.........|+++|+||+|. .. ...
T Consensus 76 ---------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~nK~Dl--~~--~~~ 118 (164)
T 1r8s_A 76 ---------------DSNDRERVNEAREELMR------------------MLAEDELRDAVLLVFANKQDL--PN--AMN 118 (164)
T ss_dssp ---------------ETTCGGGHHHHHHHHHH------------------HHTCGGGTTCEEEEEEECTTS--TT--CCC
T ss_pred ---------------ECCCHHHHHHHHHHHHH------------------HHhchhhcCCeEEEEEECcCC--cC--CCC
Confidence 01111111111111111 111111247899999999954 32 112
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+++.+..... ..+.+++++||++|.|++++.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHH
Confidence 23343332211 114579999999999988775544
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.90 E-value=8.2e-10 Score=113.94 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=85.2
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC------C-CcccCCCcccc----------------------------------
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS------S-AAAENFPFCTI---------------------------------- 131 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~------~-~~~~~~~~~T~---------------------------------- 131 (561)
...+..++++|.||+|||||+|+|++. + ..++..|++|.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 345678999999999999999999742 2 12222232221
Q ss_pred ---cCccc----cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHH
Q psy17315 132 ---DPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLE 204 (561)
Q Consensus 132 ---~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~ 204 (561)
+.... ...+..+.++||||+..+.. ...+.+|++++|+|++..+. . ..+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~~-------~---~~l~~-- 190 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGDD-------L---QGIKK-- 190 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----------HHHTTCSEEEEEECC----------------CCCCH--
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccHH-------H---HHHHH--
Confidence 00000 02245799999999864321 12478999999998753211 0 00100
Q ss_pred HHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcC------CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 205 TRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVG------TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 205 ~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~------~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.........|.||+|......... ....+...+.... ..+.+.+|+++|.|++.|+++|.+..
T Consensus 191 ~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 191 GLMEVADLIVINKDDGDNHTNVAI-ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHCSEEEECCCCTTCHHHHHH-HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred hhhcccCEEEEECCCCCChHHHHH-HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 011111112899999973211000 0011222111211 23568999999999999999998863
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=118.47 Aligned_cols=151 Identities=18% Similarity=0.127 Sum_probs=84.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc---------c------cCCCcccccCcccc--cc-----CCeEEEEeCCCcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA---------A------ENFPFCTIDPNENN--KV-----PAFLNVVDIAGLVKG 154 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~---------~------~~~~~~T~~~~~~~--~~-----~~~i~l~DtpG~~~~ 154 (561)
.+|+++|.+++|||||+++|+..... + ....|.|....... +. ...+.||||||....
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 57999999999999999999763211 0 11245555433221 11 246889999998643
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccH
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~ 231 (561)
.. .....++.+|++++|+|++.... .. ....+...+ ....+ ++||+|+.... ..
T Consensus 85 ~~-------ev~~~l~~aD~aILVVDa~~gv~-------~q---t~~~~~~~~-~~~ipiIvViNKiDl~~a~-----~~ 141 (599)
T 3cb4_D 85 SY-------EVSRSLAACEGALLVVDAGQGVE-------AQ---TLANCYTAM-EMDLEVVPVLNKIDLPAAD-----PE 141 (599)
T ss_dssp HH-------HHHHHHHHCSEEEEEEETTTCCC-------TH---HHHHHHHHH-HTTCEEEEEEECTTSTTCC-----HH
T ss_pred HH-------HHHHHHHHCCEEEEEEECCCCCC-------HH---HHHHHHHHH-HCCCCEEEeeeccCccccc-----HH
Confidence 32 23445688999999999863210 11 111111111 22222 89999997432 12
Q ss_pred HHHHHHhhhcC--CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 232 GEKKMLLGRVG--TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 232 ~~l~~l~~~~~--~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.....+...+. ....+.+||++|.|+..|++++.+..+.
T Consensus 142 ~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 142 RVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 22333333332 2357999999999999999999987643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-10 Score=106.14 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=38.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
..+|.+.|.+|+|||+|++.+.+..+. .+.++.+.. ...+...+..+.+|||||.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA--TLQPTWHPT--SEELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC--CCCCCCSCE--EEEEEETTEEEEEEECCCSG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--ccccCCCCC--eEEEEECCEEEEEEECCCCH
Confidence 458999999999999999999987553 233322221 12233344678899999964
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-10 Score=103.27 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+ ..+.++.|.. ...+...+..+.+|||||.++ +..+...+.+....++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~--~~~~~t~g~~--~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI--SHITPTQGFN--IKSVQSQGFKLNVWDIGGQRK-IRPYWRSYFENTDILIY 89 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC--EEEEEETTEE--EEEEEETTEEEEEEECSSCGG-GHHHHHHHHTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC--CcccCcCCeE--EEEEEECCEEEEEEECCCCHH-HHHHHHHHhCCCCEEEE
Confidence 456899999999999999999998743 3344444432 112223355788999999543 33443333333322211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.+ .+. .......|+++|+||+|. ..
T Consensus 90 v~----------------d~~~~~s~~~~~~~~~~-----------------~~~-~~~~~~~piilv~NK~Dl--~~-- 131 (181)
T 1fzq_A 90 VI----------------DSADRKRFEETGQELTE-----------------LLE-EEKLSCVPVLIFANKQDL--LT-- 131 (181)
T ss_dssp EE----------------ETTCGGGHHHHHHHHHH-----------------HTT-CGGGTTCCEEEEEECTTS--TT--
T ss_pred EE----------------ECcCHHHHHHHHHHHHH-----------------HHh-ChhhcCCCEEEEEECcCc--cc--
Confidence 11 01111112211122111 011 111247899999999954 32
Q ss_pred cchHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+++.+.+.. ...+.+++++||++|.|+.++.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 132 AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 1123344433221 0114579999999999988775443
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-10 Score=104.97 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=81.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+.+..+.....+. .+. .. ..+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~- 93 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT-VFD--HYAVSVTVGGKQYLLGLYDTAGQED-YDRLRPLSYPMTDVF- 93 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCS-SCC--CEEEEEESSSCEEEEEEECCCCSSS-STTTGGGGCTTCSEE-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-ccc--eeEEEEEECCEEEEEEEEECCCCcc-hhHHHHHhcCCCCEE-
Confidence 57999999999999999999988654332222 121 11 1122222 4678999999532 211111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
.++- ++.+.+.+..+. .|+. .+.... ...|+++|+||+|.....
T Consensus 94 -------------i~v~--d~~~~~s~~~~~~~~~~------------------~~~~~~--~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 94 -------------LICF--SVVNPASFQNVKEEWVP------------------ELKEYA--PNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp -------------EEEE--ETTCHHHHHHHHHTHHH------------------HHHHHS--TTCCEEEEEECTTSTTCH
T ss_pred -------------EEEE--ECCCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEEEChhhcccc
Confidence 1111 112222222221 1111 122111 378999999999642110
Q ss_pred ----------hccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHH
Q psy17315 401 ----------KKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ----------~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~ 441 (561)
......++..+++... +. +++++||++|.|++++.+...
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 139 KTLARLNDMKEKPICVEQGQKLAKEI--GACCYVECSALTQKGLKTVFDEAI 188 (194)
T ss_dssp HHHHHHTTTTCCCCCHHHHHHHHHHH--TCSCEEECCTTTCTTHHHHHHHHH
T ss_pred cchhhcccccCcccCHHHHHHHHHHc--CCcEEEEeeCCCCCCHHHHHHHHH
Confidence 0112234455555444 33 799999999999888755443
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-10 Score=105.73 Aligned_cols=57 Identities=32% Similarity=0.294 Sum_probs=35.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi 302 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+.. ....+... ...+.+|||||.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~~~i~Dt~G~ 83 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPT-VFEN-YVADIEVDGKQVELALWDTAGQ 83 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCE-EEEEEEETTEEEEEEEEECTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCc-ccce-EEEEEEECCEEEEEEEEECCCc
Confidence 357999999999999999999998654332222 1211 11112222 246889999995
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-10 Score=104.17 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=81.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+.. ....+. .....+.+|||||.++ +..+...+.+....++
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT-VFEN-YTASFEIDTQRIELSLWDTSGSPY-YDNVRPLSYPDSDAVL 83 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC-SEEE-EEEEEECSSCEEEEEEEEECCSGG-GTTTGGGGCTTCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-ccee-EEEEEEECCEEEEEEEEECCCChh-hhhhHHhhcCCCcEEE
Confidence 357999999999999999999998654332222 1211 011111 1224688999999532 2222111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
++- ++.+.+.+..+. .|+. .+.... ...|+++|+||+|.....
T Consensus 84 --------------~v~--d~~~~~s~~~~~~~~~~------------------~i~~~~--~~~piilv~nK~Dl~~~~ 127 (184)
T 1m7b_A 84 --------------ICF--DISRPETLDSVLKKWKG------------------EIQEFC--PNTKMLLVGCKSDLRTDV 127 (184)
T ss_dssp --------------EEE--ETTCHHHHHHHHHTHHH------------------HHHHHC--TTCEEEEEEECGGGGGCH
T ss_pred --------------EEE--ECCCHHHHHHHHHHHHH------------------HHHHHC--CCCCEEEEEEcchhhcch
Confidence 111 112222222221 1111 122221 378999999999642100
Q ss_pred ----------hccchHHHHHHHHHhcCCCCeEEeechh-hhhhhCCCCHHHH
Q psy17315 401 ----------KKNKWLPKIKEWVDANDPGATIIPFSGV-FEHQLVDMPDDER 441 (561)
Q Consensus 401 ----------~~~~~~~~l~~~~~~~~~~~~vi~iSA~-~~~gl~~L~~~~~ 441 (561)
......++..+++... ...+++++||+ ++.|++++.+...
T Consensus 128 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~gi~~l~~~i~ 178 (184)
T 1m7b_A 128 STLVELSNHRQTPVSYDQGANMAKQI-GAATYIECSALQSENSVRDIFHVAT 178 (184)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEECBTTTBHHHHHHHHHHHH
T ss_pred hhHhhhhhcccCCCCHHHHHHHHHHc-CCcEEEEeeecCCCcCHHHHHHHHH
Confidence 0112234455555443 13689999999 6999888755443
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.4e-10 Score=105.75 Aligned_cols=162 Identities=13% Similarity=0.153 Sum_probs=86.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |. +.. ..+.. ....+.+|||||.++ +..+...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~---- 80 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GA-DFLTKEVMVDDRLVTMQIWDTAGQER-FQSLGVAFYRG---- 80 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC-SE-EEEEEEEESSSCEEEEEEEEECSSGG-GSCSCCGGGTT----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc-cc-eEEEEEEEECCEEEEEEEEeCCCcHH-HHHhHHHHHhC----
Confidence 4679999999999999999999986543332221 21 111 11222 224688999999422 11111111100
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh---hccCCceEEEecCChhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN---LLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~---~l~~kP~iiv~NK~D~d 397 (561)
+|...++-+ +.+.+.+..+..++.. +.... .....|+++|+||+|.
T Consensus 81 ----------~d~~i~v~d--~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~~~piilv~nK~Dl- 129 (207)
T 1vg8_A 81 ----------ADCCVLVFD--VTAPNTFKTLDSWRDE------------------FLIQASPRDPENFPFVVLGNKIDL- 129 (207)
T ss_dssp ----------CSEEEEEEE--TTCHHHHHTHHHHHHH------------------HHHHHCCSSGGGSCEEEEEECTTS-
T ss_pred ----------CcEEEEEEE--CCCHHHHHHHHHHHHH------------------HHHhcccccCCCCcEEEEEECCCC-
Confidence 111111111 1111222222222111 11111 0136899999999954
Q ss_pred hhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
.. .....+.+.++.... .+.+++++||++|.|+.++.+.......+
T Consensus 130 -~~-~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 130 -EN-RQVATKRAQAWCYSK-NNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp -SC-CCSCHHHHHHHHHHT-TSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -cc-cccCHHHHHHHHHhc-CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 32 233445555555422 26789999999999999887766555443
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-10 Score=105.90 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=80.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
...+|.+.|.+|+|||+|++.+.+..+.... .++.+ +... .+...+ ..+.+|||||.++ +..+...+.+....
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~-~~t~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY-IPTAF--DNFSAVVSVDGRPVRLQLCDTAGQDE-FDKLRPLCYTNTDI 94 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSS--EEEEEEEEETTEEEEEEEEECCCSTT-CSSSGGGGGTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCccc--ceeEEEEEECCEEEEEEEEECCCCHH-HHHHhHhhcCCCcE
Confidence 4568999999999999999999987643322 22222 1111 122222 3577999999632 21111111111111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
+ .++- ++.+.+.+..+. .|+. .+.... ...|+++|+||+|...
T Consensus 95 ~--------------i~v~--d~~~~~s~~~~~~~~~~------------------~~~~~~--~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 95 F--------------LLCF--SVVSPSSFQNVSEKWVP------------------EIRCHC--PKAPIILVGTQSDLRE 138 (201)
T ss_dssp E--------------EEEE--ETTCHHHHHHHHHTHHH------------------HHHHHC--SSSCEEEEEECGGGGG
T ss_pred E--------------EEEE--ECCCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEEECHhhhh
Confidence 1 1111 112222222221 1111 122111 3789999999996421
Q ss_pred hh----------hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 399 IK----------KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 399 ~~----------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.. ......+...++.... ...+++++||++|.|+.++.+.....+.
T Consensus 139 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 139 DVKVLIELDKCKEKPVPEEAAKLLAEEI-KAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CHHHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccccCCHHHHHHHHHhc-CCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 10 0112234444554443 1238999999999999888666555443
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-10 Score=107.30 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=83.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+||++|++.+.+..+.... .++.+. ... .+... ...+.+|||||.++ +..+...+.+....+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~-~~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFD--NFSANVAVDGQIVNLGLWDTAGQED-YSRLRPLSYRGADIF 84 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCSSCC--CEEEEEECSSCEEEEEEECCCCCCC-CCC--CGGGTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccC-CCccce--eEEEEEEECCEEEEEEEEECCCcHH-HHHHHHhhccCCCEE
Confidence 367999999999999999999988654332 222221 111 12222 24688999999532 222221121111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
.++- ++.+.+.+..+. .|+. .+.... ...|+++|+||+|. .
T Consensus 85 --------------ilv~--d~~~~~s~~~~~~~~~~------------------~~~~~~--~~~piilv~nK~Dl--~ 126 (212)
T 2j0v_A 85 --------------VLAF--SLISKASYENVLKKWMP------------------ELRRFA--PNVPIVLVGTKLDL--R 126 (212)
T ss_dssp --------------EEEE--ETTCHHHHHHHHHTHHH------------------HHHHHC--TTCCEEEEEECHHH--H
T ss_pred --------------EEEE--ECCCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEEeCHHh--h
Confidence 1111 112222222221 1111 122111 37899999999954 3
Q ss_pred hhcc--------chHHHHHHHHHhcCCC-CeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKN--------KWLPKIKEWVDANDPG-ATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~--------~~~~~l~~~~~~~~~~-~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.... ...+.+.+++... + .+++++||++|.|+.++.+.....+
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 127 DDKGYLADHTNVITSTQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp TCHHHHHTCSSCCCHHHHHHHHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hCccccccccCCCCHHHHHHHHHHc--CCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 2111 0234444554443 4 4899999999999988866554443
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.1e-10 Score=106.35 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=36.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+++..+.....+.+ + +... .+... ...+.+|||||.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-F--DNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS-E--EEEEEEEECC-CEEEEEEEEECCSG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee-c--ceeEEEEEECCEEEEEEEEECCCch
Confidence 34689999999999999999999876543333221 1 1111 11222 2346699999963
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-09 Score=101.37 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcc---cCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccc-ccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAA---ENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFL-SHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~---~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l-~~i 169 (561)
...++|+++|.+|||||||+|+|++..... +..|.++.+. ....+.++||||...... ....++ ..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRY----KLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTH----HHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHH----HHHHHHHhcc
Confidence 345799999999999999999999876321 2334444332 234699999999854331 111121 122
Q ss_pred ccCCEEEEEeccc
Q psy17315 170 SACDAIFHLCKEK 182 (561)
Q Consensus 170 ~~~D~il~VvD~~ 182 (561)
..+|++++|+|++
T Consensus 81 ~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 81 KFVKGLIFMVDST 93 (218)
T ss_dssp GGEEEEEEEEETT
T ss_pred ccCCEEEEEEECC
Confidence 3489999999876
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.8e-12 Score=134.55 Aligned_cols=160 Identities=20% Similarity=0.254 Sum_probs=91.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH-HHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE-KEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~-~~~~~l~~~~~~~~~~ 319 (561)
...+|.+.|.+|+|||+|+|.+++..+ ..++..+||+ |+.. .+.+.+..+.+|||||++ +..+.++ ..
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~--a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve-------~~ 312 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDR--AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE-------RL 312 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTB--CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC-------CC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCC--CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH-------HH
Confidence 447899999999999999999999842 3344445554 5543 234455679999999974 2100000 00
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
-....+.. +..+|+++.|++.. ...+.++.+++... ..+|+++|+||+|. .
T Consensus 313 gi~~~~~~--------------~~~aD~vl~VvD~s----------~~~s~~~~~il~~l---~~~piivV~NK~DL--~ 363 (482)
T 1xzp_A 313 GIERTLQE--------------IEKADIVLFVLDAS----------SPLDEEDRKILERI---KNKRYLVVINKVDV--V 363 (482)
T ss_dssp CHHHHHHH--------------HHHCSEEEEEEETT----------SCCCHHHHHHHHHH---TTSSEEEEEEECSS--C
T ss_pred HHHHHHHH--------------hhcccEEEEEecCC----------CCCCHHHHHHHHHh---cCCCEEEEEECccc--c
Confidence 00000000 01112322222210 12233444444322 47999999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
. ....+++.+++. .+.+++++||++|.|+++|.+...+.+.
T Consensus 364 ~--~~~~~~~~~~~~---~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 364 E--KINEEEIKNKLG---TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp C--CCCHHHHHHHHT---CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred c--ccCHHHHHHHhc---CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 2 112344555432 1357999999999999999777666543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-09 Score=112.66 Aligned_cols=125 Identities=19% Similarity=0.091 Sum_probs=79.1
Q ss_pred EEeccCCCCCCCCccccCCCcccchhhh-hcCCCCc-----cCCCChHH---HHHHHHHHHhcCCCc--cccccccCCCC
Q psy17315 12 LIEATVPRDGLSFYESTNPKIPRSNQIL-ISDKPTW-----GDGDGPKA---PKRRKQHLSDKLRPK--ADSKKKMGPKK 80 (561)
Q Consensus 12 v~DAR~P~~~~~~~~s~n~~l~~~~~~~-~~~k~~l-----~DL~~~~~---~~~w~~~l~~~~~~~--~~~~~~~~~~~ 80 (561)
++|||.| ..+.| .|+++.... ..++|.+ +||++++. ++.|+.+|++.|..+ +++..+.+...
T Consensus 136 iv~a~~P------~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~ 208 (358)
T 2rcn_A 136 IVSAILP------ELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKP 208 (358)
T ss_dssp EEEESTT------TCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHH
T ss_pred EEEeCCC------CCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHH
Confidence 6799999 88888 577622111 1344444 99999876 778999999888776 55555544332
Q ss_pred chhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCC---c----ccccCccccccCCeEEEEeCCCc
Q psy17315 81 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFP---F----CTIDPNENNKVPAFLNVVDIAGL 151 (561)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~---~----~T~~~~~~~~~~~~i~l~DtpG~ 151 (561)
... . ..+-.++++|.+|||||||+|+|.|... .++... | +|+.... ...+....++||||+
T Consensus 209 L~~----~-----~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i-~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 209 LEE----A-----LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL-YHFPHGGDVIDSPGV 278 (358)
T ss_dssp HHH----H-----HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE-EECTTSCEEEECHHH
T ss_pred HHH----h-----cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE-EEECCCCEecCcccH
Confidence 111 1 1345799999999999999999998653 233222 3 2332221 223444678999998
Q ss_pred cc
Q psy17315 152 VK 153 (561)
Q Consensus 152 ~~ 153 (561)
..
T Consensus 279 ~e 280 (358)
T 2rcn_A 279 RE 280 (358)
T ss_dssp HT
T ss_pred HH
Confidence 65
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-09 Score=124.12 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=91.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC---C-------------cccCCCcccccCccccc--cCCeEEEEeCCCcccCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS---A-------------AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~---~-------------~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~ 155 (561)
...++|+++|.+|+|||||+|+|++.. . ......|+|.+...... ....+.++||||.....
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 345799999999999999999998741 0 11134677766533211 23579999999985322
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~ 231 (561)
......++.+|++++|+|++.... ....+.+. .+.....+ ++||+|+......-....
T Consensus 374 -------~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~----ll~~lgIP~IIVVINKiDLv~d~e~le~i~ 435 (1289)
T 3avx_A 374 -------KNMITGAAQMDGAILVVAATDGPM-------PQTREHIL----LGRQVGVPYIIVFLNKCDMVDDEELLELVE 435 (1289)
T ss_dssp -------HHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHH----HHHHHTCSCEEEEEECCTTCCCHHHHHHHH
T ss_pred -------HHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHH----HHHHcCCCeEEEEEeecccccchhhHHHHH
Confidence 223455789999999999864211 11111221 22222222 799999974110000011
Q ss_pred HHHHHHhhhcC----CCcEEEEEccCC--------CCHHHHHHHHHhhc
Q psy17315 232 GEKKMLLGRVG----TNLKVGIVGVPN--------VGKSTFFNVLTKRA 268 (561)
Q Consensus 232 ~~l~~l~~~~~----~~~~i~isg~~~--------~Gks~l~~~l~~~~ 268 (561)
.++..+..... ..+.+.+||++| .|+.+|++.|.+..
T Consensus 436 eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 436 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 22333333332 357899999999 57889999998754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.7e-10 Score=105.46 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=83.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+||++|++.+.+..+.....+. .+.. ....+.. ....+.+|||+|.++ +..+...+.+....+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT-VFEN-YTASFEIDTQRIELSLWDTSGSPY-YDNVRPLSYPDSDAV 103 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC-SEEE-EEEEEESSSSEEEEEEEEECCSGG-GTTTGGGGCTTCSEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCc-ccee-EEEEEEECCEEEEEEEEeCCCcHh-hhHHHHhhccCCCEE
Confidence 3468999999999999999999998664332222 1111 1111211 224688999999532 222221111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
+ ++- ++.+.+.+..+ ..|+. .+.... ...|+++|+||+|....
T Consensus 104 i--------------lv~--D~~~~~s~~~~~~~~~~------------------~i~~~~--~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 104 L--------------ICF--DISRPETLDSVLKKWKG------------------EIQEFC--PNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp E--------------EEE--ETTCHHHHHHHHHTHHH------------------HHHHHC--TTCEEEEEEECGGGGGC
T ss_pred E--------------EEE--ECCCHHHHHHHHHHHHH------------------HHHHHC--CCCCEEEEEechhhccc
Confidence 1 111 11222222222 11111 122211 37899999999964210
Q ss_pred h----------hccchHHHHHHHHHhcCCCCeEEeechh-hhhhhCCCCHHHHH
Q psy17315 400 K----------KKNKWLPKIKEWVDANDPGATIIPFSGV-FEHQLVDMPDDERQ 442 (561)
Q Consensus 400 ~----------~~~~~~~~l~~~~~~~~~~~~vi~iSA~-~~~gl~~L~~~~~~ 442 (561)
. ......++..++++.. ...+++++||+ ++.|++++.+...+
T Consensus 148 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 148 VSTLVELSNHRQTPVSYDQGANMAKQI-GAATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCCCCHHHHHHHHHHc-CCCEEEEeeeccCCcCHHHHHHHHHH
Confidence 0 0112234455555443 13689999999 68998887555443
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.8e-09 Score=112.16 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc----------------c------cCCCcccccCccc--cccCCeEEEEeCCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA----------------A------ENFPFCTIDPNEN--NKVPAFLNVVDIAGL 151 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~----------------~------~~~~~~T~~~~~~--~~~~~~i~l~DtpG~ 151 (561)
..+|+++|.+|+|||||+|+|++.... + ....|+|...... ...+..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 468999999999999999999864211 0 0133444433221 123457999999998
Q ss_pred ccCCccccccccccccccccCCEEEEEecccc
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
.... ......++.+|++++|+|++.
T Consensus 93 ~df~-------~~~~~~l~~aD~~IlVvDa~~ 117 (529)
T 2h5e_A 93 EDFS-------EDTYRTLTAVDCCLMVIDAAK 117 (529)
T ss_dssp TTCC-------HHHHHGGGGCSEEEEEEETTT
T ss_pred hhHH-------HHHHHHHHHCCEEEEEEeCCc
Confidence 5433 233456789999999999863
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.6e-10 Score=102.51 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=38.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+.+..+.. ..++.|.. ...+.+....+.+|||||.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT--TIPTIGFN--VETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC--CCCCSSEE--EEEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC--cCCcCccc--eEEEEECCEEEEEEECCCCh
Confidence 34689999999999999999998875532 22222221 11223335678899999953
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-10 Score=104.05 Aligned_cols=57 Identities=28% Similarity=0.332 Sum_probs=40.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+.+..+ ..+.++.|.. ...+...+..+.+|||||.+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSN--VEEIVINNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSS--CEEEEETTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcCcee--eEEEEECCEEEEEEECCCCH
Confidence 346899999999999999999998865 3333333432 12233345678999999963
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.2e-10 Score=109.72 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=84.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHH-----H----HHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEK-----E----INKIEK 311 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~-----~----~~~l~~ 311 (561)
...+|.+.|.+|+|||+|++.+++..+....+ ++++ +... .+...+..+.+|||||..+ . ...+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSY---SFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC--------CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCC---CCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 45789999999999999999999886542222 2332 1111 1222345688999999721 0 011111
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCC-HHHHHHHHhhhhc-cCCceEE
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWS-NADIEHLNKLNLL-TAKTQIY 389 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~-~~e~~~l~~~~~l-~~kP~ii 389 (561)
. .... ++++.|.+. .. ...+. ..+..++..+... ..+|+++
T Consensus 105 ~-~~~~----------------------------d~~i~v~d~------~~--~~s~~~~~~~~~~~~l~~~~~~~piil 147 (228)
T 2qu8_A 105 L-AHIN----------------------------GVILFIIDI------SE--QCGLTIKEQINLFYSIKSVFSNKSIVI 147 (228)
T ss_dssp H-HTSS----------------------------EEEEEEEET------TC--TTSSCHHHHHHHHHHHHTCC-CCCEEE
T ss_pred h-hccc----------------------------cEEEEEEec------cc--ccCcchHHHHHHHHHHHHhhcCCcEEE
Confidence 0 0000 111111110 00 00111 1222333333221 3789999
Q ss_pred EecCChhhhhhhccc---hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 390 LVNLSAKDYIKKKNK---WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 390 v~NK~D~d~~~~~~~---~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
|+||+|. ...... ..+.+.+++....+..+++++||++|.|+.++.+.....+.+
T Consensus 148 v~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 148 GFNKIDK--CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EEECGGG--CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCccc--CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 9999954 321111 112344444443112789999999999999987766655443
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.2e-09 Score=117.09 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC---C---c------ccC------CCcccccCccc--cccCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS---A---A------AEN------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~---~---~------~~~------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~ 155 (561)
..+|+++|.+|+|||||+|+|++.. . . +.+ .+|+|...... .+.+..+.||||||.....
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 4689999999999999999998421 1 1 111 34566554332 1234579999999986433
Q ss_pred ccccccccccccccccCCEEEEEecccc
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
......++.+|++++|+|++.
T Consensus 90 -------~~~~~~l~~aD~~llVvDa~~ 110 (693)
T 2xex_A 90 -------VEVERSLRVLDGAVTVLDAQS 110 (693)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTT
T ss_pred -------HHHHHHHHHCCEEEEEECCCC
Confidence 234556788999999999863
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.2e-10 Score=109.03 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=83.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHH-----HHHHHHHhhCC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEI-----NKIEKLVQRGD 317 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~-----~~l~~~~~~~~ 317 (561)
.+|.+.|.+|+|||+|+|.+++..+..+++ +|++ +... .+...+..+.+|||||..... +.+...+....
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~---pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANW---PGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEEC---TTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCC---CCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 579999999999999999999976554433 3443 3222 123334578999999964210 01111111000
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d 397 (561)
.+ +++..|++ . ...+....++..+.. .+.|+++|+||+|..
T Consensus 83 ------------~~--------------d~ii~V~D------~------t~~~~~~~~~~~l~~-~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 83 ------------DA--------------DLVILVAD------S------VNPEQSLYLLLEILE-MEKKVILAMTAIDEA 123 (258)
T ss_dssp ------------CC--------------SEEEEEEE------T------TSCHHHHHHHHHHHT-TTCCEEEEEECHHHH
T ss_pred ------------CC--------------CEEEEEeC------C------CchhhHHHHHHHHHh-cCCCEEEEEECcCCC
Confidence 00 11110000 0 001122222222222 479999999999653
Q ss_pred hhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.........+.+.+. . +.+++++||++|.|+.+|.+...+.
T Consensus 124 ~~~~i~~~~~~l~~~---l--g~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 124 KKTGMKIDRYELQKH---L--GIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp HHTTCCBCHHHHHHH---H--CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHH---c--CCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 221111223444333 2 6789999999999999987765543
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-10 Score=102.90 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=79.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+ ..+.++.|.. ...+...+..+.+|||||.++ +..+...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~------ 85 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV--VTTKPTIGFN--VETLSYKNLKLNVWDLGGQTS-IRPYWRCYYAD------ 85 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE--EEECSSTTCC--EEEEEETTEEEEEEEEC-----CCTTGGGTTTT------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc--CccCCcCccc--eEEEEECCEEEEEEECCCCHh-HHHHHHHHhcc------
Confidence 457899999999999999999987654 2222222321 122333346788999999643 11111111100
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+|...++-+. .+.+.+..+..++.. +........+|+++|+||+|. ..
T Consensus 86 --------~d~ii~v~d~--~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~nK~Dl--~~-- 133 (183)
T 1moz_A 86 --------TAAVIFVVDS--TDKDRMSTASKELHL------------------MLQEEELQDAALLVFANKQDQ--PG-- 133 (183)
T ss_dssp --------EEEEEEEEET--TCTTTHHHHHHHHHH------------------HTTSSTTSSCEEEEEEECTTS--TT--
T ss_pred --------CCEEEEEEEC--CCHHHHHHHHHHHHH------------------HHcChhhCCCeEEEEEECCCC--CC--
Confidence 1111111110 000111111111111 111111247899999999954 32
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+++.+.+... ..+.+++++||++|.|++++.+...+.
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (183)
T 1moz_A 134 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177 (183)
T ss_dssp CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 12234444443221 113579999999999998886655443
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-09 Score=102.77 Aligned_cols=155 Identities=13% Similarity=0.060 Sum_probs=78.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+.. ..++.+.. ...+...+..+.+|||||.++ +..+...+.+....++.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFN--VETVEYKNICFTVWDVGGQDK-IRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEEETTEE--EEEEEETTEEEEEEECC------CTTHHHHHHTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--cCCcCcee--EEEEEECCEEEEEEECCCCHh-HHHHHHHHhccCCEEEE
Confidence 34689999999999999999998775431 11111211 112333445788999999643 33333222222222111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +.........|+++|+||+|. ..
T Consensus 103 v~----------------D~~~~~s~~~~~~~l~~------------------~~~~~~~~~~piilv~NK~Dl--~~-- 144 (192)
T 2b6h_A 103 VV----------------DSNDRERVQESADELQK------------------MLQEDELRDAVLLVFANKQDM--PN-- 144 (192)
T ss_dssp EE----------------ETTCGGGHHHHHHHHHH------------------HHTCGGGTTCEEEEEEECTTS--TT--
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HhcccccCCCeEEEEEECCCC--CC--
Confidence 11 01111111111111111 111111247899999999954 32
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+++.+.+... ..+.+++++||++|.|++++.+..
T Consensus 145 ~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 145 AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp CCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHH
Confidence 12233443332211 114579999999999988775443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-11 Score=113.73 Aligned_cols=58 Identities=34% Similarity=0.505 Sum_probs=39.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
..++.+.|.+|+|||+|++.+++..+. .++..++++ +... .+...+..+.+|||||++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA--IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS--CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc--eeeCCCCceeceeeEEEEECCeEEEEEECCCcc
Confidence 467999999999999999999987432 223333443 3322 233334468899999974
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-09 Score=111.45 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=42.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhh-HhhhcccHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIIN-EELRLKDVEHIEK 304 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~-~el~l~Dt~Gi~~ 304 (561)
-+.|.++|.+|+|||||++++++..+..+.++++ |.+|... +.+.+ ..+.+|||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ft--Tl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFT--TLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSS--CCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCcc--ccCceEEEEEeCCCceEEEecCCCCcc
Confidence 4579999999999999999999986655555542 3344432 22332 5689999999754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-09 Score=100.70 Aligned_cols=153 Identities=11% Similarity=0.109 Sum_probs=84.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+.++ .+.. ..+...+..+.+|||||.++ +. ...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~-~~-----------~~~ 72 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGIT--QHIGAYQVTVNDKKITFLDTPGHEA-FT-----------TMR 72 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSS--TTCCCCEEEETTEEEEESCCCSSSS-SS-----------CSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCcee--EeeeEEEEEeCCceEEEEECCCCHH-HH-----------HHH
Confidence 457899999999999999999999876554443321 1111 12333445688999999421 10 000
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ +..++++..|.+. . ........+.+..... ...|+++|+||+|. ...
T Consensus 73 ~~~-----------------~~~~d~~i~v~d~------~----~~~~~~~~~~l~~~~~-~~~p~ilv~nK~Dl--~~~ 122 (178)
T 2lkc_A 73 ARG-----------------AQVTDIVILVVAA------D----DGVMPQTVEAINHAKA-ANVPIIVAINKMDK--PEA 122 (178)
T ss_dssp CSS-----------------CCCCCEEEEEEET------T----CCCCHHHHHHHHHHGG-GSCCEEEEEETTTS--SCS
T ss_pred HHH-----------------HhhCCEEEEEEEC------C----CCCcHHHHHHHHHHHh-CCCCEEEEEECccC--CcC
Confidence 011 1111222212110 0 0122334444444333 47899999999954 321
Q ss_pred ccchHHHHHHHHHhcC-------CCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDAND-------PGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~-------~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
..+++.+.+.... ...+++++||++|.|++++.+....
T Consensus 123 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 123 ---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp ---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 1122333222210 0147999999999999888655443
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=7e-10 Score=106.57 Aligned_cols=154 Identities=12% Similarity=0.032 Sum_probs=80.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+....+. ..+.++.|++ .... .+......+.+|||+|.+. +..+...+.+....++
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK-FGGLRDGYYIQAQCAI 92 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHT-CEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG-TSCCCHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH-HhHHHHHHHhcCCEEE
Confidence 467999999999999999995554433 3333444432 2221 1222334688999999532 2222222222111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+...+..+..|+.. +.... ...|+++|+||+|. ...
T Consensus 93 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~--~~~p~ilv~nK~Dl--~~~ 134 (221)
T 3gj0_A 93 IMF----------------DVTSRVTYKNVPNWHRD------------------LVRVC--ENIPIVLCGNKVDI--KDR 134 (221)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHS--TTCCEEEEEECTTS--SSC
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECCcc--ccc
Confidence 111 11222222222222221 21111 37899999999954 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.. .....+++... +.+++++||++|.|+.++.+...
T Consensus 135 ~~--~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 135 KV--KAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp SS--CGGGCCHHHHH--TCEEEECBGGGTBTTTHHHHHHH
T ss_pred cc--cHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 11122222332 57899999999999988754443
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=114.33 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC------Cccc------C------CCcccccCccc--cccCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS------AAAE------N------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~------~~~~------~------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~ 155 (561)
..+|+++|.+|+|||||+|+|+... ..+. + ..+.|...... .+....+.||||||.....
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH
Confidence 3689999999999999999998321 0111 1 33555443322 1234579999999985422
Q ss_pred ccccccccccccccccCCEEEEEecccc
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
......++.+|++++|+|++.
T Consensus 92 -------~~~~~~l~~aD~~ilVvDa~~ 112 (691)
T 1dar_A 92 -------IEVERSMRVLDGAIVVFDSSQ 112 (691)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTT
T ss_pred -------HHHHHHHHHCCEEEEEEECCC
Confidence 234556788999999999863
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-10 Score=115.60 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=83.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHH-----HHHHHHhhCC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEIN-----KIEKLVQRGD 317 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~-----~l~~~~~~~~ 317 (561)
.+|.+.|.+|+|||+|+|.+++..+..+.+ +|++ +... .+.+.+..+.+|||||+..... .+...+....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNW---PGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEEC---TTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCC---CCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 579999999999999999999986533333 3332 3222 2333445689999999642100 0111111000
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccC-CceEEEecCChh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTA-KTQIYLVNLSAK 396 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~-kP~iiv~NK~D~ 396 (561)
.++++..|++. . . .+.....+..... .. +|+++|+||+|.
T Consensus 81 --------------------------~~d~vi~v~D~------~-----~-~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 81 --------------------------NADVIVDIVDS------T-----C-LMRNLFLTLELFE-MEVKNIILVLNKFDL 121 (271)
T ss_dssp --------------------------CCSEEEEEEEG------G-----G-HHHHHHHHHHHHH-TTCCSEEEEEECHHH
T ss_pred --------------------------CCcEEEEEecC------C-----c-chhhHHHHHHHHh-cCCCCEEEEEEChhc
Confidence 00111100000 0 0 0111222222222 24 999999999964
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
..........+.+.+.+ +.+++++||++|.|+.++.+.....+
T Consensus 122 ~~~~~~~~~~~~l~~~l-----g~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 122 LKKKGAKIDIKKMRKEL-----GVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp HHHHTCCCCHHHHHHHH-----SSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHc-----CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 32221222344444433 67899999999999998876655443
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.1e-09 Score=106.62 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=82.4
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCC
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
.....+|.+.|.+|+|||+|++.+.+..+.....+. .+ +... .+...+ ..+.+|||||.++ +..+...+.+..
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t-~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~ 227 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-VF--DNYSANVMVDGKPVNLGLWDTAGLED-YDRLRPLSYPQT 227 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC-SE--EEEEEEEEETTEEEEEEEEEECCCGG-GTTTGGGGCTTC
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc-cc--ceeEEEEEECCEEEEEEEEeCCCchh-hhHHHHHhccCC
Confidence 345678999999999999999999987654332221 11 1111 122222 3466999999533 221111111111
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d 397 (561)
..+ .++- ++.+...+..+.. .| ...+.... ..+|+++|+||+|..
T Consensus 228 d~~--------------i~v~--d~~~~~s~~~~~~-------------~~----~~~~~~~~--~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 228 DVF--------------LICF--SLVSPASFHHVRA-------------KW----YPEVRHHC--PNTPIILVGTKLDLR 272 (332)
T ss_dssp SEE--------------EEEE--ETTCHHHHHHHHH-------------TH----HHHHHHHC--TTSCEEEEEECHHHH
T ss_pred CEE--------------EEEE--eCCCHHHHHHHHH-------------HH----HHHHHhhC--CCCcEEEEEEchhcc
Confidence 111 1111 1111122221110 00 11122211 378999999999542
Q ss_pred hhhh----------ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHH
Q psy17315 398 YIKK----------KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 398 ~~~~----------~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.... .....+...+++... +. +++++||++|.|+.++.+...
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 325 (332)
T 2wkq_A 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKYLECSALTQRGLKTVFDEAI 325 (332)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHT--TCSEEEECCTTTCTTHHHHHHHHH
T ss_pred cccchhhhccccccccccHHHHHHHHHHc--CCcEEEEecCCCCcCHHHHHHHHH
Confidence 1100 112233444555544 43 899999999999988755443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.9e-09 Score=97.48 Aligned_cols=56 Identities=30% Similarity=0.480 Sum_probs=38.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
.++.+.|.+|+|||+|++.+++..+....+ +++ .++.. .+...+..+.+|||||..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNW---PGVTVEKKEGEFEYNGEKFKVVDLPGVY 65 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEEC---TTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCC---CCeeccceEEEEEeCCcEEEEEECCCcC
Confidence 579999999999999999999865433222 333 23322 233345678899999964
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=98.70 Aligned_cols=165 Identities=10% Similarity=-0.013 Sum_probs=87.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh-----cCC-CcccCCCccc----------------ccCcc---c-------------
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT-----KSS-AAAENFPFCT----------------IDPNE---N------------- 136 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~-----~~~-~~~~~~~~~T----------------~~~~~---~------------- 136 (561)
+...+.++|.+||||||+++.|. |.+ .-+..-|+.+ .+... +
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 34678899999999999999998 655 2233223211 10000 0
Q ss_pred ------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHH
Q psy17315 137 ------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLE 204 (561)
Q Consensus 137 ------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~ 204 (561)
......+.++||||....... ..+...+...+.+ +++++|+|+.... .............
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~~------~~~~~~~~~~~~~ 164 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEILK------KPNDYCFVRFFAL 164 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGCC------SHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhhc------CHHHHHHHHHHHH
Confidence 001236999999998754321 1112223344566 8999999875211 0111111111111
Q ss_pred HHHHHhcch---hhccccccCcCCCCCccHHHH-------HHH-----------------hhhcCC-CcEEEEEccCCCC
Q psy17315 205 TRIRDLRRS---VDAKADSKKKMGPKKTDEGEK-------KML-----------------LGRVGT-NLKVGIVGVPNVG 256 (561)
Q Consensus 205 ~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l-------~~l-----------------~~~~~~-~~~i~isg~~~~G 256 (561)
........+ |.||+|......... ....+ ..+ ...... ...+.+|+++|.|
T Consensus 165 ~~~~~~~~p~~iv~NK~D~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 165 LIDLRLGATTIPALNKVDLLSEEEKER-HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHHHTSCEEEEECCGGGCCHHHHHH-HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred HHhcccCCCeEEEEecccccccccHHH-HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc
Confidence 111122222 899999974321100 00000 011 112222 3679999999999
Q ss_pred HHHHHHHHHhhc
Q psy17315 257 KSTFFNVLTKRA 268 (561)
Q Consensus 257 ks~l~~~l~~~~ 268 (561)
++.|++++.+..
T Consensus 244 i~~l~~~i~~~~ 255 (262)
T 1yrb_A 244 FEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=96.73 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=41.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh---hHhhhcccHHHHHHHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII---NEELRLKDVEHIEKEINKIEKLVQ 314 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~ 314 (561)
..+|.+.|.+|+|||+|++++++..+... ++++ +.....+.+. ...+.+|||||.++....+...+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 76 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSI---TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFK 76 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCB-CCCC---SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCc---ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHH
Confidence 46899999999999999999998764332 2221 1111112222 345889999996543332444443
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-09 Score=114.27 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=75.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCc-------------------------------ccCCCcccccCcccc--ccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAA-------------------------------AENFPFCTIDPNENN--KVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~-------------------------------~~~~~~~T~~~~~~~--~~~ 140 (561)
...++|+++|.+|+|||||+|+|+..... .....|.|.+..... ...
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 34579999999999999999999742100 011346666654321 123
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccch--hhhccchhhHhhhHHHHHHHHHHhcch----h
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNI--FFISLNTITIWRNLKLLETRIRDLRRS----V 214 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~----v 214 (561)
..+.+|||||..... ......++.+|++++|+|++.... .+... ....+.+. .+..+..+ +
T Consensus 121 ~~~~iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~--~qt~e~l~----~~~~~~vp~iivv 187 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYV-------TNMINGASQADIGVLVISARRGEFEAGFERG--GQTREHAV----LARTQGINHLVVV 187 (467)
T ss_dssp EEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTT--CCHHHHHH----HHHHTTCSSEEEE
T ss_pred eEEEEEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCcCccccccCCC--CcHHHHHH----HHHHcCCCEEEEE
Confidence 578999999985432 223455688999999999864210 00000 00111111 11222221 7
Q ss_pred hccccccCcCCCCC---ccHHHHHHHhhhc-C-----CCcEEEEEccCCCCHHHH
Q psy17315 215 DAKADSKKKMGPKK---TDEGEKKMLLGRV-G-----TNLKVGIVGVPNVGKSTF 260 (561)
Q Consensus 215 ~NK~D~~~~~~~~~---~~~~~l~~l~~~~-~-----~~~~i~isg~~~~Gks~l 260 (561)
+||+|+........ ....++..+.... . ..+.+.+||++|.|+..+
T Consensus 188 iNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 188 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred EECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 99999963211000 0111233333222 1 345799999999997543
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-08 Score=96.55 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=83.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC------CcccCCCcccccCcc-------------c---------------cccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS------AAAENFPFCTIDPNE-------------N---------------NKVP 140 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~------~~~~~~~~~T~~~~~-------------~---------------~~~~ 140 (561)
....++++|.+|||||||+|+|++.. +.+...|++|.+... + ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999998641 223333443321100 0 0112
Q ss_pred CeEEEEeCCCcc-cCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhcccc
Q psy17315 141 AFLNVVDIAGLV-KGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKAD 219 (561)
Q Consensus 141 ~~i~l~DtpG~~-~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D 219 (561)
..+.++||||.. .+. ... ..++.+++|+|++... ................++||+|
T Consensus 109 ~d~iiidt~G~~~~~~---------~~~--~~~~~~i~vvd~~~~~------------~~~~~~~~~~~~~~iiv~NK~D 165 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---------DFD--LGENYRVVMVSVTEGD------------DVVEKHPEIFRVADLIVINKVA 165 (221)
T ss_dssp CSEEEEEEEEBSSGGG---------GCC--CSCSEEEEEEEGGGCT------------THHHHCHHHHHTCSEEEEECGG
T ss_pred CCEEEEeCCCCCCCCc---------hhc--cccCcEEEEEeCCCcc------------hhhhhhhhhhhcCCEEEEeccc
Confidence 357788888852 111 011 2357788999875321 0000001111111112899999
Q ss_pred ccCcCCCCCccHHHHHH-HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 220 SKKKMGPKKTDEGEKKM-LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 220 ~~~~~~~~~~~~~~l~~-l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.... ....+.. +.......+.+.+|+.+|.|+..++++|.+..
T Consensus 166 l~~~~~~---~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 166 LAEAVGA---DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp GHHHHTC---CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCcchhh---HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 9743211 1222222 22222345789999999999999999998764
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-11 Score=115.24 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=73.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.++-+. ....+...+ ..+.+|||||.++ +.. ..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~-----------~~ 99 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER-FRT-----------IT 99 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE-EEEEEEETTEEEEEEEECCTTCTT-CCC-----------CS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE-EEEEEEECCEEEEEEEEECCCcHh-HHH-----------HH
Confidence 36899999999999999999988755443333221111 111222222 4688999999421 111 00
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..++. .+|...++- ++.+.+.+..+..++.. +..... ...|+++|+||+|. ...
T Consensus 100 ~~~~~---~~d~~i~v~--d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~p~ilv~nK~Dl--~~~ 153 (199)
T 3l0i_B 100 SSYYR---GAHGIIVVY--DVTDQESFNNVKQWLQE------------------IDRYAS-ENVNKLLVGNKCDL--TTK 153 (199)
T ss_dssp CC--C---CCSEEEECC---CCCSHHHHHHHHHHHH------------------HHSCC--CCSEEEEC-CCSSC--C--
T ss_pred HHHhh---cCCEEEEEE--ECCCHHHHHHHHHHHHH------------------HHHhcc-CCCCEEEEEECccC--Ccc
Confidence 11100 011111111 11112222222222211 211111 36899999999964 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.....+...++.... +.+++++||+++.|+.++.+.
T Consensus 154 ~~v~~~~~~~~~~~~--~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 154 KVVDYTTAKEFADSL--GIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp CCCCSCC-CHHHHTT--TCCBCCCCC---HHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHH
Confidence 111112233344433 678999999999998776433
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.6e-10 Score=104.81 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=37.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
...+|.+.|.+|+|||+|++.+.+..+.. ..++.|.. ...+...+..+.+|||||.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~~~Dt~G~ 76 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVPTVGVN--LETLQYKNISFEVWDLGGQ 76 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECSSTTCC--EEEEEETTEEEEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--cCCCCceE--EEEEEECCEEEEEEECCCC
Confidence 45789999999999999999998764321 11211211 1123333567889999995
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-08 Score=99.17 Aligned_cols=154 Identities=12% Similarity=0.018 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
||.++|..|||||||++.+.+... ......+.|...... ......+++|||||....... .+ ......++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEP--SY--DSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccch--hh--hhhhhccCCCEE
Confidence 589999999999999999876541 111122333332221 112356999999998654310 00 012346899999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cch-----hhccccccCcCCCCCccHHHHHH-Hhhh-cC---
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS-----VDAKADSKKKMGPKKTDEGEKKM-LLGR-VG--- 242 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-----v~NK~D~~~~~~~~~~~~~~l~~-l~~~-~~--- 242 (561)
++|+|.+.+ ..+.++.+.+.+.+. ... ++||+|+.....-.. ....+.. .... ..
T Consensus 77 IlV~Ditd~-----------~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~-~~R~V~~~~~~~la~~~~ 144 (331)
T 3r7w_B 77 VYVIDSQDE-----------YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVD-AQRDIMQRTGEELLELGL 144 (331)
T ss_dssp EEECCCSSC-----------TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHH-HHHHHHHHHHHTTSSSSC
T ss_pred EEEEECCch-----------HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhh-HHHHhhHHHHHHHHhhcc
Confidence 999998732 222333333333221 111 899999973210000 0011111 1111 11
Q ss_pred ---CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 ---TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ---~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.-..+..|+++ .++...+..+.+..
T Consensus 145 ~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 145 DGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp SCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred cccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 12356788887 58888888888774
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.6e-09 Score=107.08 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=77.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++.+.+..+.. ..+ |++.. ..+...+..+.+|||||. +.+..+...+.+....++.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~-~~p----T~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIP----TIGFNVETVEYKNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEE-EEE----ETTEEEEEEEETTEEEEEEECC------CCSHHHHHTTEEEEEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCC-ccc----ccceEEEEEecCcEEEEEEECCCC-HhHHHHHHHHhccCCEEEE
Confidence 4589999999999999999998875421 111 21111 123334457899999994 3333333332222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ + +.+.+.+..+..++. ..+.. ......|+|+|+||+|. ..
T Consensus 239 V~--------------D--~~~~~s~~~~~~~~~-----------------~~~~~-~~~~~~piilV~NK~Dl--~~-- 280 (329)
T 3o47_A 239 VV--------------D--SNDRERVNEAREELM-----------------RMLAE-DELRDAVLLVFANKQDL--PN-- 280 (329)
T ss_dssp EE--------------E--TTCSSSHHHHHHHHH-----------------HHHTC-GGGTTCEEEEEEECTTS--TT--
T ss_pred EE--------------E--CCchHHHHHHHHHHH-----------------HHHhh-hccCCCeEEEEEECccC--Cc--
Confidence 11 0 000011111111111 01111 11247899999999954 32
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+.+... ..+.+++++||++|.|+++|.+...
T Consensus 281 ~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 281 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp CCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 12233444333221 1245799999999999988755443
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-09 Score=93.25 Aligned_cols=57 Identities=37% Similarity=0.398 Sum_probs=35.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
+++.+.|.+|+|||+|++.+.+..+.. +...++++ +... .+...+..+.+|||||..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 60 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV--VADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETTEEEEEEECGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee--ccCCCCceecceEEEEEeCCceEEEEECCCCC
Confidence 478999999999999999999875321 22222332 2221 223334578899999964
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=107.26 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=53.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC---C---ccc------C------CCcccccCccc--cccC-------CeEEEEe
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS---A---AAE------N------FPFCTIDPNEN--NKVP-------AFLNVVD 147 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~---~---~~~------~------~~~~T~~~~~~--~~~~-------~~i~l~D 147 (561)
...+|+++|.+|+|||||+++|+... . .+. + ..|.|...... .+.. ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 34689999999999999999996431 1 111 1 23444432221 1122 5789999
Q ss_pred CCCcccCCccccccccccccccccCCEEEEEecccc
Q psy17315 148 IAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 148 tpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
|||...... .....++.+|.+++|+|++.
T Consensus 89 TPG~~df~~-------~~~~~l~~aD~aIlVvDa~~ 117 (704)
T 2rdo_7 89 TPGHVDFTI-------EVERSMRVLDGAVMVYCAVG 117 (704)
T ss_pred CCCccchHH-------HHHHHHHHCCEEEEEEeCCC
Confidence 999864332 23455688999999999863
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-08 Score=96.12 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=35.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chh-hhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIE-IINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~-~~~~el~l~Dt~Gi 302 (561)
...+|.+.|.+|+|||+|++.+.+..... ....+.-+..... .+. .....+.+|||+|.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 79 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCC
Confidence 34689999999999999999988863222 1111111111110 111 12246889999994
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-08 Score=93.87 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.++.+.|.+|+|||+|++.+++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999985
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-08 Score=103.20 Aligned_cols=56 Identities=34% Similarity=0.456 Sum_probs=36.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhHhhhcccHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDVEHI 302 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~el~l~Dt~Gi 302 (561)
+.+.++|.+|+|||||+|.+++..+.....++ .|.|+.. .+.+.+..+.+|||+|+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~--~T~d~~~~~i~~~g~~v~l~DT~G~ 236 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLF--TTMSPKRYAIPINNRKIMLVDTVGF 236 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcc--cccCCEEEEEEECCEEEEEEeCCCc
Confidence 34999999999999999999998654333333 2345543 34444567889999996
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-08 Score=100.07 Aligned_cols=130 Identities=14% Similarity=-0.001 Sum_probs=78.1
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhh-cCCCCc-----cCCCChH---HHHHHHHHHHhcCCCc--ccccc
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SDKPTW-----GDGDGPK---APKRRKQHLSDKLRPK--ADSKK 74 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~k~~l-----~DL~~~~---~~~~w~~~l~~~~~~~--~~~~~ 74 (561)
.+.+|.|.|++.| ..+.+ .+++....+. .+.|.+ +||.++. ..+.|.+++++.+..+ ++++.
T Consensus 80 aD~vliV~d~~~p------~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~ 152 (302)
T 2yv5_A 80 VDRVIIVETLKMP------EFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKT 152 (302)
T ss_dssp CCEEEEEECSTTT------TCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTT
T ss_pred cCEEEEEEECCCC------CCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3567999999999 54433 2333111111 334444 9999876 2677888887766554 66666
Q ss_pred ccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-------ccccCccccccCCeEEEE
Q psy17315 75 KMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-------CTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-------~T~~~~~~~~~~~~i~l~ 146 (561)
+.+...... ...+..++++|.+|||||||+|+|. .. ..++.... +|+.... .......+++
T Consensus 153 g~gi~~L~~---------~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~-~~~~~~g~v~ 221 (302)
T 2yv5_A 153 GEGIDELVD---------YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL-IPFGKGSFVG 221 (302)
T ss_dssp CTTHHHHHH---------HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE-EEETTTEEEE
T ss_pred CCCHHHHHh---------hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE-EEcCCCcEEE
Confidence 544332111 0124578999999999999999999 55 44444443 3332211 1122346889
Q ss_pred eCCCccc
Q psy17315 147 DIAGLVK 153 (561)
Q Consensus 147 DtpG~~~ 153 (561)
||||+..
T Consensus 222 d~pg~~~ 228 (302)
T 2yv5_A 222 DTPGFSK 228 (302)
T ss_dssp SSCCCSS
T ss_pred ECcCcCc
Confidence 9999863
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.7e-09 Score=109.53 Aligned_cols=242 Identities=16% Similarity=0.203 Sum_probs=120.0
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hhhh-HhhhcccHHHHHHHHH-------HHHH
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EIIN-EELRLKDVEHIEKEIN-------KIEK 311 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~~~-~el~l~Dt~Gi~~~~~-------~l~~ 311 (561)
+.....+.+.|.+|+|||||++.|++..+..+.++++ |.+|.... ...+ ..+.+|||||+.+... ...+
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft--Tl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~ 231 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT--TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR 231 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTC--SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccc--eecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH
Confidence 4556789999999999999999999886544444442 23343222 2222 4678999999632100 0000
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEe
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLV 391 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~ 391 (561)
. .+....++..+ | +. .+.+..+..+. .++..+ ...+..+|.|+|+
T Consensus 232 ~-~era~~lL~vv-------D---------ls-~~~~~~ls~g~---------------~el~~l--a~aL~~~P~ILVl 276 (416)
T 1udx_A 232 H-IARTRVLLYVL-------D---------AA-DEPLKTLETLR---------------KEVGAY--DPALLRRPSLVAL 276 (416)
T ss_dssp H-HTSSSEEEEEE-------E---------TT-SCHHHHHHHHH---------------HHHHHH--CHHHHHSCEEEEE
T ss_pred H-HHHHHhhhEEe-------C---------Cc-cCCHHHHHHHH---------------HHHHHH--hHHhhcCCEEEEE
Confidence 0 00111111100 0 00 01111110000 111111 1112479999999
Q ss_pred cCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceecc
Q psy17315 392 NLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFF 471 (561)
Q Consensus 392 NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~ 471 (561)
||+|. .. . ..++.+.+.+... +.+++++||+++.|+++|.+...+.+.+....+... . +|.. ....-|
T Consensus 277 NKlDl--~~-~-~~~~~l~~~l~~~--g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~-~----~~~~-~~~~~~ 344 (416)
T 1udx_A 277 NKVDL--LE-E-EAVKALADALARE--GLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPK-P----VPRK-EVQAGV 344 (416)
T ss_dssp ECCTT--SC-H-HHHHHHHHHHHTT--TSCEEECCTTTCTTHHHHHHHHHHHHHTSCCCCCCC-C----CC-----CCCC
T ss_pred ECCCh--hh-H-HHHHHHHHHHHhc--CCeEEEEECCCccCHHHHHHHHHHHHHhcccccccc-c----cccc-ccCCCc
Confidence 99954 32 1 3445555555443 568999999999999888666554433221111000 0 0000 000011
Q ss_pred ccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhH-HhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 472 TAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDF-KEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 472 t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~-~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
+.. .+-+......|....+++.+++=|-.+.+.+ +.+. .++|=+++.+++| +++||.|.|
T Consensus 345 ~i~-~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~gv~~~l~~~g----------~~~gd~v~i 405 (416)
T 1udx_A 345 EVV-PVAEGVYEVRAPEVERYLARIKGDLMEAAGY-----LQEVFRRQGVEAALRAKG----------VRAGDLVRI 405 (416)
T ss_dssp EEE-EEETTEEEEECHHHHHHHTTEEECTGGGHHH-----HHHHHHHTTHHHHHHTTT----------CCTTCEEEE
T ss_pred EEE-EcCCCeEEEeChHHHHHHHhcCCCCHHHHHH-----HHHHHHHCCHHHHHHHcC----------CCCCCEEEE
Confidence 111 0112233445666666666666655555521 2223 2255566676666 778887765
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-08 Score=110.50 Aligned_cols=154 Identities=13% Similarity=0.096 Sum_probs=75.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc----c-cchhh----hhHhhhcccHHHHHHHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP----V-RDIEI----INEELRLKDVEHIEKEINKIEKLVQ 314 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp----~-~~~~~----~~~el~l~Dt~Gi~~~~~~l~~~~~ 314 (561)
..+|.++|.+|+|||+|++.+++..+.....+.+.-++.. . ..+.. ....+.+|||||.+. +..+...+.
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~-~~~~~~~~l 119 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI-MHASHQFFM 119 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT-TTTTCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH-HHHHHHHHc
Confidence 4689999999999999999999987543332222111110 0 02222 235688999999422 211111111
Q ss_pred hCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhc-cCCceEEEecC
Q psy17315 315 RGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLL-TAKTQIYLVNL 393 (561)
Q Consensus 315 ~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l-~~kP~iiv~NK 393 (561)
+.. ++++.|++.... +....++..+... ..+|+|+|+||
T Consensus 120 ~~~----------------------------d~ii~V~D~s~~------------~~~~~~~~~l~~~~~~~pvilV~NK 159 (535)
T 3dpu_A 120 TRS----------------------------SVYMLLLDSRTD------------SNKHYWLRHIEKYGGKSPVIVVMNK 159 (535)
T ss_dssp HSS----------------------------EEEEEEECGGGG------------GGHHHHHHHHHHHSSSCCEEEEECC
T ss_pred cCC----------------------------cEEEEEEeCCCc------------hhHHHHHHHHHHhCCCCCEEEEEEC
Confidence 111 111111111000 1111122222211 35899999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
+|. ........+.+++.+... +.+++++||++|.|+++|.+...+
T Consensus 160 ~Dl--~~~~~v~~~~~~~~~~~~--~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 160 IDE--NPSYNIEQKKINERFPAI--ENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp TTT--CTTCCCCHHHHHHHCGGG--TTCEEECCC-----CTTHHHHHHH
T ss_pred CCc--ccccccCHHHHHHHHHhc--CCceEEEecCcccCHHHHHHHHHH
Confidence 954 332333455666665554 567999999999999998665543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=104.66 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=53.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc---cc---------C------CCcccccCccc--cccCCeEEEEeCCCcccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA---AE---------N------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~---~~---------~------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~ 154 (561)
...+++++|.+|+|||||+++|++.... .+ + ..|.|...... ......+.++||||....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4568999999999999999999853311 11 0 11333332221 112346899999998542
Q ss_pred CccccccccccccccccCCEEEEEeccc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
. ......++.+|.+++|+|++
T Consensus 88 ~-------~~~~~~l~~ad~~ilVvD~~ 108 (665)
T 2dy1_A 88 V-------GEIRGALEAADAALVAVSAE 108 (665)
T ss_dssp H-------HHHHHHHHHCSEEEEEEETT
T ss_pred H-------HHHHHHHhhcCcEEEEEcCC
Confidence 2 23455678899999999875
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-08 Score=99.72 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=38.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhh-hhHhhhcccHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEI-INEELRLKDVEHIEKE 305 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~-~~~el~l~Dt~Gi~~~ 305 (561)
..+|.+.|.+|+|||+|++.+.+.. ....+..+++| +... .+.+ .+..+.+|||||.++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~--~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY--SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC--CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH
Confidence 4679999999999999999988763 22222222332 2221 1121 2356889999997543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.1e-08 Score=101.75 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=85.2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHH----HHHHHHHhhC
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEI----NKIEKLVQRG 316 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~----~~l~~~~~~~ 316 (561)
.....+.+.|.+|+|||+|+|.+++..+....++++ |.++. ..+...+..+.+|||||+.... +.+......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~- 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT--TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAIL- 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTC--SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCe--eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHH-
Confidence 345789999999999999999999876433333322 11111 1122223468899999973210 000000000
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCC-HHHHHHHHhhhhcc-CCceEEEecCC
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWS-NADIEHLNKLNLLT-AKTQIYLVNLS 394 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~-~~e~~~l~~~~~l~-~kP~iiv~NK~ 394 (561)
.. ...+ +.++.|+| .... ..++ .....++....... ++|+++|+||+
T Consensus 242 ------~~---~~~a--------------d~illV~D------~s~~--~~~~~~~~~~~~~~i~~~~~~~piilV~NK~ 290 (357)
T 2e87_A 242 ------AL---RYLG--------------NLIIYIFD------PSEH--CGFPLEEQIHLFEEVHGEFKDLPFLVVINKI 290 (357)
T ss_dssp ------GG---GGTC--------------SEEEEEEC------TTCT--TSSCHHHHHHHHHHHHHHTTTSCEEEEECCT
T ss_pred ------HH---HhcC--------------CEEEEEEe------CCcc--ccCCHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 00 0000 11111111 0000 0111 11223333332212 79999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
|. .. ....+.+.+++... +.+++++||++|.|+++|.+...+.+
T Consensus 291 Dl--~~--~~~~~~~~~~~~~~--~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 291 DV--AD--EENIKRLEKFVKEK--GLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp TT--CC--HHHHHHHHHHHHHT--TCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred cc--CC--hHHHHHHHHHHHhc--CCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 54 22 11223444444443 57899999999999999877665543
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.7e-08 Score=105.85 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---------cCCeEEEEeCCCcccCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---------VPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---------~~~~i~l~DtpG~~~~~ 155 (561)
.....|+|+|.||||||||+|+|+|..... +++++|++.+.+.+ .+..+.|+||||+....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 344789999999999999999999987322 56666655544432 24579999999998543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-08 Score=103.70 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
...++|+++|.+|+|||||+|+|.+..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999998765
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-08 Score=101.29 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.|.++|.+|+|||+|+|+|++..+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 446899999999999999999999865
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-08 Score=109.84 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=80.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc----cCCCcccccCCcc-ccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA----FEDDDVTHVEGEV-NPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~----~~~~~v~~~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
...|.+.|..++|||+|+++|++.. +.........|.+ +.. ..+.+.+..+.+|||||.+.....+... ....
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~-~~~a 97 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA-ADII 97 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH-TTSC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH-HhhC
Confidence 3579999999999999999999864 1111111112332 221 1223344578999999965432222211 1111
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d 397 (561)
|+++.|+++.. ....+..+.+..... .+.|.++|+||+|..
T Consensus 98 ----------------------------D~~ilVvda~~----------g~~~qt~e~l~~~~~-~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 98 ----------------------------DLALIVVDAKE----------GPKTQTGEHMLILDH-FNIPIIVVITKSDNA 138 (482)
T ss_dssp ----------------------------CEEEEEEETTT----------CSCHHHHHHHHHHHH-TTCCBCEEEECTTSS
T ss_pred ----------------------------CEEEEEEecCC----------CccHHHHHHHHHHHH-cCCCEEEEEECCCcc
Confidence 11111111100 011222232322222 478999999999542
Q ss_pred hhhhccchHHHHHHHHHhc--CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDAN--DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~--~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+...+++.+++... .+..+++++||++|.|+.+|.+..
T Consensus 139 ~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L 183 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLI 183 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHH
Confidence 1111122344555555432 125789999999999998775544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.7e-08 Score=91.03 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=81.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||+|++.+++..+.....+.+ | +++. ..+.+.+ ..+.+|||+|.++ +..+...+.+.....+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~-~-~~~~~~~i~~~g~~~~~~i~Dt~g~~~-~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-G-VEFATRSIQVDGKTIKAQIWDTAGQER-YRRITSAYYRGAVGAL 82 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCC-S-CEEEEEEEEETTEEEEEEEEECSSGGG-TTCCCHHHHTTCSEEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-c-eeEEEEEEEECCEEEEEEEEECCCchh-hhhhhHHHHhcCCEEE
Confidence 579999999999999999999986544333221 1 1111 1222222 3567899999532 2111111111111000
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
++- ++.+......+..++.. +.... ....|+++|+||+|.. ..
T Consensus 83 --------------~v~--d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~i~~v~nK~Dl~--~~ 125 (199)
T 2f9l_A 83 --------------LVY--DIAKHLTYENVERWLKE------------------LRDHA-DSNIVIMLVGNKSDLR--HL 125 (199)
T ss_dssp --------------EEE--ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTCG--GG
T ss_pred --------------EEE--ECcCHHHHHHHHHHHHH------------------HHHhc-CCCCeEEEEEECcccc--cc
Confidence 000 01111111111111111 11111 1368999999999543 22
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+..+.++.. ++..++.+||+.+.|+.++.+...+..
T Consensus 126 ~~~~~~~a~~l~~~--~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 126 RAVPTDEARAFAEK--NNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CCSCHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22333445555544 367889999999999888766555443
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=8.6e-08 Score=101.03 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=36.5
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcC-CCCeEEeechhhhhhhCCCCHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~-~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..+|+++|+||+|....+......+++.+.+.... .+.+++++||++|.|+.+|.+..
T Consensus 128 ~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l 186 (403)
T 3sjy_A 128 GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGI 186 (403)
T ss_dssp TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHH
Confidence 34799999999954211111223445555543321 25689999999999997765443
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-07 Score=94.75 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=73.8
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhh-cCCCCc-----cCCCChHH---HHHHHHHHHhcCCCc--ccccc
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SDKPTW-----GDGDGPKA---PKRRKQHLSDKLRPK--ADSKK 74 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~k~~l-----~DL~~~~~---~~~w~~~l~~~~~~~--~~~~~ 74 (561)
.+..|.|.|++.| .++.+ .+++....+. .+.|.+ +||.+... .++|.+.+... ..+ ++++.
T Consensus 85 ad~vilV~D~~~~------~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAkt 156 (301)
T 1u0l_A 85 VDQVILVVTVKMP------ETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKT 156 (301)
T ss_dssp CCEEEEEECSSTT------CCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTT
T ss_pred CCEEEEEEeCCCC------CCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCC
Confidence 4567999999999 54432 1222110011 233333 99998765 56777776543 333 66666
Q ss_pred ccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-------ccccCccccccCCeEEEE
Q psy17315 75 KMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-------CTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-------~T~~~~~~~~~~~~i~l~ 146 (561)
+.+.... ... ..+-.++++|.+|||||||+|+|.+.. ...+.... +|..... .......+++
T Consensus 157 g~gv~~l---f~~------l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~-~~~~~~g~v~ 226 (301)
T 1u0l_A 157 GMGIEEL---KEY------LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL-LKFDFGGYVV 226 (301)
T ss_dssp CTTHHHH---HHH------HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE-EECTTSCEEE
T ss_pred CcCHHHH---HHH------hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE-EEcCCCCEEE
Confidence 5443321 111 123468999999999999999999876 33343332 3333211 1122345899
Q ss_pred eCCCcccC
Q psy17315 147 DIAGLVKG 154 (561)
Q Consensus 147 DtpG~~~~ 154 (561)
|+||+...
T Consensus 227 q~p~~~~~ 234 (301)
T 1u0l_A 227 DTPGFANL 234 (301)
T ss_dssp SSCSSTTC
T ss_pred ECcCCCcc
Confidence 99998643
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-07 Score=92.31 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=40.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|+|.|++..+.....+....|.++.. .+.+.+..+.+|||||+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~ 89 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIF 89 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCcc
Confidence 3468999999999999999999998765544442222223322 233445678999999953
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.4e-09 Score=106.91 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=38.3
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcC-----CCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-----PGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~-----~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.+|.++|+||+|...........+++.+.+.... .+.+++++||++|.|+++|.+...+.
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999965322111222334444332221 14689999999999999997766544
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-08 Score=103.26 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCc-eEEEecCChhhhhh----hccchHHHHHHHHHhcC----CCCeEEeechhhhhhhCCCCH
Q psy17315 384 AKT-QIYLVNLSAKDYIK----KKNKWLPKIKEWVDAND----PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 384 ~kP-~iiv~NK~D~d~~~----~~~~~~~~l~~~~~~~~----~~~~vi~iSA~~~~gl~~L~~ 438 (561)
+.| +|+|+||+|....+ ..+...+++.+++.... ...+++++||++|.|+.++.+
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 566 99999999642110 01123344444443321 135799999999999999865
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.7e-09 Score=113.32 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=83.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..++|.+.|.+|+|||+|+++|.+..+.....+ |++ +... .+.+ .+..+.||||||.+. + ..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~---giT~~i~~~~v~~~~g~~i~~iDTPGhe~-f-----------~~ 67 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG---GITQHIGAFLVSLPSGEKITFLDTPGHAA-F-----------SA 67 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSC---CBCCCTTSCCBCSSCSSCCBCEECSSSCC-T-----------TT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC---ceeEEEeEEEEEeCCCCEEEEEECCChHH-H-----------HH
Confidence 457899999999999999999998765443322 322 1111 1222 234789999999311 1 00
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
..... +..+|+++.|++.. ........+.+..... .+.|+++|+||+|....
T Consensus 68 ~~~~~-----------------~~~aD~vILVVDa~----------dg~~~qt~e~l~~~~~-~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 68 MRARG-----------------TQVTDIVILVVAAD----------DGVMKQTVESIQHAKD-AHVPIVLAINKCDKAEA 119 (537)
T ss_dssp SBBSS-----------------SBSBSSCEEECBSS----------SCCCHHHHHHHHHHHT-TTCCEEECCBSGGGTTT
T ss_pred HHHHH-----------------HccCCEEEEEEECC----------CCccHHHHHHHHHHHH-cCCcEEEEEeccccccc
Confidence 00111 11123333222210 1223344444444433 47899999999965321
Q ss_pred hhccchHHHHHHH---HHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 KKKNKWLPKIKEW---VDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ~~~~~~~~~l~~~---~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
. .......+.++ ++.+....+++++||++|.|+.+|.+..
T Consensus 120 ~-~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 120 D-PEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp S-CCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred c-hHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 1 12222233222 1111113589999999999998875544
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=6.8e-07 Score=97.65 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=51.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC------C----------ccc------CCCcccccCccc--cccCCeEEEEeCCCcc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS------A----------AAE------NFPFCTIDPNEN--NKVPAFLNVVDIAGLV 152 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~------~----------~~~------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~ 152 (561)
.+|+|+|...+|||||.-+|.-.. . .+. ..-|.|...... .+.+..|.|+||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 479999999999999999995211 0 111 122444433221 3456689999999998
Q ss_pred cCCccccccccccccccccCCEEEEEeccc
Q psy17315 153 KGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 153 ~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.+.. .....++-+|..++|||+.
T Consensus 112 DF~~-------Ev~raL~~~DgAvlVvda~ 134 (548)
T 3vqt_A 112 DFSE-------DTYRVLTAVDSALVVIDAA 134 (548)
T ss_dssp GCSH-------HHHHHHHSCSEEEEEEETT
T ss_pred HHHH-------HHHHHHHhcCceEEEeecC
Confidence 6553 2355678889999999985
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-07 Score=102.55 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.8
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+|.++|.+|+|||+|+++|+..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999876
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-08 Score=103.37 Aligned_cols=56 Identities=23% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcC-CCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~-~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.+|+++|+||+|...........+++++++.... .+.+++++||++|.|+.+|.+.
T Consensus 135 ~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~ 191 (408)
T 1s0u_A 135 IDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKA 191 (408)
T ss_dssp CCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHH
T ss_pred CCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHH
Confidence 4689999999954211111234566777765421 2578999999999998766443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.8e-08 Score=102.41 Aligned_cols=59 Identities=36% Similarity=0.423 Sum_probs=38.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC----CCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE----DDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~----~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
....+.+.|.+|+|||+|+|+|.+.... ...++..+|||.....+.. +..+.++||||+
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~-~~~~~liDtPG~ 221 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL-DEESSLYDTPGI 221 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES-SSSCEEEECCCB
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe-cCCeEEEeCCCc
Confidence 4568999999999999999999987422 2234556677632222222 224889999997
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=4.2e-08 Score=103.67 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=36.4
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhc-CCCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~-~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.+|+++|+||+|...........+++++++... ..+.+++++||++|.|+.+|.+.
T Consensus 137 ~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~ 193 (410)
T 1kk1_A 137 QKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKA 193 (410)
T ss_dssp CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred CCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHH
Confidence 468999999995421111112345566666532 12578999999999999776444
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-07 Score=89.07 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=34.0
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
.....+.+.|.+|+|||+|++.+++..+ ...+++.+|++.-...+.. +..+.+|||||+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~~~~~~G~~~~~~~~~~-~~~~~l~Dt~G~ 82 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKS-LARTSKTPGRTQLINLFEV-ADGKRLVDLPGY 82 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEE-ETTEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccccCCCccceeeEEEEe-cCCEEEEECcCC
Confidence 4567899999999999999999998753 2334445566521111111 126789999996
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-08 Score=99.72 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.|+++|.+|+|||||+|+|++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 347899999999999999999999864
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-08 Score=105.95 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=81.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhH-hhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINE-ELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~-el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|+|++++..+. .++..+|+ +++.. .+...+. .+.+|||||.... ..+ ....
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~--~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~-~~l-------~~~~ 103 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVS--IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV-GEL-------GRLR 103 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTTEEEEEEECSSTTCC-CTT-------CCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCC--ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc-cch-------hHHH
Confidence 468999999999999999999987542 22233344 34442 2333332 7899999996320 000 0000
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
..........+ |+++.|++ . .....+..++..... ..+|+++|+||+|. ..
T Consensus 104 ~~~~~~~l~~a--------------D~vllVvD------~------~~~~~~~~~l~~l~~-~~~piIvV~NK~Dl--~~ 154 (423)
T 3qq5_A 104 VEKARRVFYRA--------------DCGILVTD------S------APTPYEDDVVNLFKE-MEIPFVVVVNKIDV--LG 154 (423)
T ss_dssp HHHHHHHHTSC--------------SEEEEECS------S------SCCHHHHHHHHHHHH-TTCCEEEECCCCTT--TT
T ss_pred HHHHHHHHhcC--------------CEEEEEEe------C------CChHHHHHHHHHHHh-cCCCEEEEEeCcCC--CC
Confidence 00000000001 11111111 0 123344444544443 47999999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.... +..+++.+.. +.+++++||++|.|++++.+...+..
T Consensus 155 ~~~~--~~~~~l~~~~--g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 155 EKAE--ELKGLYESRY--EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp CCCT--HHHHHSSCCT--TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred ccHH--HHHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2221 3333333222 57899999999999999876655443
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-07 Score=89.96 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=39.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|+|.|++.........+.+.|.+... .+.+.+..+.+|||||+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCC
Confidence 3468999999999999999999987532222222111222221 223345679999999964
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-07 Score=94.06 Aligned_cols=58 Identities=31% Similarity=0.447 Sum_probs=35.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
....+.++|.+|+|||+|+|.|.+.. ...++..+|+|.....+. .+..+.++||||+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~--~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN--IAKTGDRPGITTSQQWVK-VGKELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC--CC------------CCEE-ETTTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc--eeecCCCCCeeeeeEEEE-eCCCEEEEECcCcC
Confidence 45689999999999999999999873 344555566652222221 24578899999973
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-07 Score=93.87 Aligned_cols=53 Identities=6% Similarity=0.011 Sum_probs=36.3
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...|+++|+||+|. .. ....++..+++... .+.+++.+||+++.|++++.+..
T Consensus 197 ~~~piilV~NK~Dl--~~--~~~v~~~~~~~~~~-~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 197 TKKPIVVVLTKCDE--GV--ERYIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp TTCCEEEEEECGGG--BC--HHHHHHHHHHHHTS-SSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEEcccc--cc--cHHHHHHHHHHHhc-CCCeEEEEECCCCCCHHHHHHHH
Confidence 46899999999954 22 11234555555432 25689999999999988775543
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-07 Score=102.78 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.6
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+|.++|.+|+|||+|+++|+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 456789999999999999999998763
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.1e-08 Score=101.46 Aligned_cols=25 Identities=40% Similarity=0.700 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.++|.+|+|||||+|.|++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999974
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-07 Score=90.83 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
...+|.+.|.+|+||++|++.+.+..+........++ .........+.+|||||.++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-----SAADYDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCE-----EETTGGGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCce-----EEEEeeCceEEEEECCCcHH
Confidence 4578999999999999999999998653321111111 11222445788999999754
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-07 Score=96.36 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.|+++|.+|+|||+|+|+|++..+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCc
Confidence 347899999999999999999999764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=9e-08 Score=107.64 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=25.3
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+|.++|.+|+|||+|+|+|++..
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999999875
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-07 Score=87.26 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=78.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||+|++.+++..+.....+++ | ++.. ..+.+.+ ..+.+|||+|.++.. .+...+.+.....+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~-~-~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~-~~~~~~~~~~~~~i 106 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-G-VEFATRSIQVDGKTIKAQIWDTAGLERYR-AITSAYYRGAVGAL 106 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCC-S-EEEEEEEEEETTEEEEEEEEEECSCCSSS-CCCHHHHTTCCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-c-eEEEEEEEEECCEEEEEEEEECCCCcchh-hhhHHHhhcCCEEE
Confidence 579999999999999999999986544333221 2 1111 1222222 235679999953211 11111111110000
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
++- ++.+...+..+..++. .+.... ....|+++|+||+|.. ..
T Consensus 107 --------------~v~--d~~~~~s~~~~~~~~~------------------~~~~~~-~~~~~i~~v~nK~Dl~--~~ 149 (191)
T 1oix_A 107 --------------LVY--DIAKHLTYENVERWLK------------------ELRDHA-DSNIVIMLVGNKSDLR--HL 149 (191)
T ss_dssp --------------EEE--ETTCHHHHHTHHHHHH------------------HHHHHS-CTTCEEEEEEECGGGG--GG
T ss_pred --------------EEE--ECcCHHHHHHHHHHHH------------------HHHHhc-CCCCcEEEEEECcccc--cc
Confidence 000 0011111111111111 111111 1368999999999543 22
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.....+..+.++.. ++..++.+||+++.|+.++.+.
T Consensus 150 ~~~~~~~a~~l~~~--~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 150 RAVPTDEARAFAEK--NGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp CCSCHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHH
T ss_pred cccCHHHHHHHHHH--cCCEEEEEeCCCCCCHHHHHHH
Confidence 23334445555554 3678899999999998776443
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.7e-07 Score=96.33 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=34.6
Q ss_pred CCceEEEecCChhhhhhhcc----chHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKN----KWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~----~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+|+|+|+||+|. ..... ...+++.++++... +..+++++||++|.|+.++.+
T Consensus 157 ~~~iIvviNK~Dl--~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 157 IKHIVVAINKMDL--NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp CCEEEEEEECTTT--TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred CCeEEEEEEcCcC--CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 3579999999954 32111 12344555555441 126899999999999998643
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5e-07 Score=103.69 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=53.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccC---------------CCcccccCccc--ccc----------------CC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAEN---------------FPFCTIDPNEN--NKV----------------PA 141 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~---------------~~~~T~~~~~~--~~~----------------~~ 141 (561)
..+|+++|.+|+|||||+|+|++.. ...+. ..|.|...... .+. ..
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 3689999999999999999998643 11111 23344332211 111 34
Q ss_pred eEEEEeCCCcccCCccccccccccccccccCCEEEEEecccc
Q psy17315 142 FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 142 ~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
.+.||||||...... .....++.+|++++|+|++.
T Consensus 99 ~i~liDTPG~~df~~-------~~~~~l~~aD~ailVvDa~~ 133 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIE 133 (842)
T ss_dssp EEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTT
T ss_pred eEEEEECcCchhhHH-------HHHHHHHhCCEEEEEEeCCC
Confidence 689999999875432 33456789999999999864
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-07 Score=102.51 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=82.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh------cCC-CcccC-------------------CCc----ccccCcc----c----
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT------KSS-AAAEN-------------------FPF----CTIDPNE----N---- 136 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~------~~~-~~~~~-------------------~~~----~T~~~~~----~---- 136 (561)
.+..|+++|.|||||||++|.|+ |.+ ..++. .|. ++.++.. .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998 554 11111 110 1111100 0
Q ss_pred cccCCeEEEEeCCCcccCCccccccccccc--cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchh
Q psy17315 137 NKVPAFLNVVDIAGLVKGAAEGQGLGNAFL--SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSV 214 (561)
Q Consensus 137 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l--~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v 214 (561)
......+.||||||...... .+...+. ..+..+|.+++|+|+.... ...+....+.+. ....-.|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~---~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED---SLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VDVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH---HHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HCCCCEE
T ss_pred HHCCCcEEEEeCCCCcccch---hHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cCceEEE
Confidence 01345799999999874321 1111111 1122689999999986321 011111112111 1111228
Q ss_pred hccccccCcCCCCCccHHHHHHH-------------hhhcCCCcEEEEEccCCCC-HHHHHHHHHhh
Q psy17315 215 DAKADSKKKMGPKKTDEGEKKML-------------LGRVGTNLKVGIVGVPNVG-KSTFFNVLTKR 267 (561)
Q Consensus 215 ~NK~D~~~~~~~~~~~~~~l~~l-------------~~~~~~~~~i~isg~~~~G-ks~l~~~l~~~ 267 (561)
.||+|...+.+. ........ .......+.+.+|+..|.| +.+|++++.+.
T Consensus 247 lNK~D~~~~~g~---~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKGGG---ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCCTH---HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccchHH---HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999998743221 00001100 0111233445678888999 99999998765
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=82.62 Aligned_cols=51 Identities=18% Similarity=0.072 Sum_probs=34.2
Q ss_pred hhccccccCcCCCCCccHHHHHHHhhhc-CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 214 VDAKADSKKKMGPKKTDEGEKKMLLGRV-GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 214 v~NK~D~~~~~~~~~~~~~~l~~l~~~~-~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
++||+|+...... ....+....... ...+.+.+|+++|.|+..+++++.+.
T Consensus 170 v~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 170 VINKIDLADAVGA---DIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp EEECGGGHHHHTC---CHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEeccccCchhHH---HHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 8999998743211 122232222222 34567899999999999999999765
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-07 Score=91.11 Aligned_cols=120 Identities=21% Similarity=0.219 Sum_probs=66.7
Q ss_pred cccccccccCCEEEEEecccccchhhh------ccchhhHhhhHHHHHHHHHHhcchhhccccccCcC------------
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFI------SLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKM------------ 224 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~------------ 224 (561)
.++...+.++|+|++|+|++.+..... .++... |.||+|+....
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~ii------------------vlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETII------------------LLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEE------------------EEECGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEE------------------EEECccCCCHHHHHHHHHHHHHc
Confidence 456788899999999999874321100 222222 55565554210
Q ss_pred CC---CC-ccHHHHHHHhhhcCCC-cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccH
Q psy17315 225 GP---KK-TDEGEKKMLLGRVGTN-LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDV 299 (561)
Q Consensus 225 ~~---~~-~~~~~l~~l~~~~~~~-~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt 299 (561)
+. .+ .....+..+....... .++.++|.+|+|||+|+|.+.+... ..+..++|++.....+. .+..+.+|||
T Consensus 75 g~~v~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~--~~~~~~~g~T~~~~~~~-~~~~~~l~Dt 151 (262)
T 3cnl_A 75 GKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA--SSVGAQPGITKGIQWFS-LENGVKILDT 151 (262)
T ss_dssp TCCEEECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEE-CTTSCEEESS
T ss_pred CCeEEEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc--cccCCCCCCccceEEEE-eCCCEEEEEC
Confidence 00 01 1111234444444444 6899999999999999999998743 23344556652222111 2346889999
Q ss_pred HHHH
Q psy17315 300 EHIE 303 (561)
Q Consensus 300 ~Gi~ 303 (561)
||+.
T Consensus 152 pG~~ 155 (262)
T 3cnl_A 152 PGIL 155 (262)
T ss_dssp CEEC
T ss_pred CCcc
Confidence 9973
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-07 Score=94.87 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=34.9
Q ss_pred CceEEEecCChhhhh---hh-ccchHHHHHHHHHhcC--C-CCeEEeechhhhhhhCCCCH
Q psy17315 385 KTQIYLVNLSAKDYI---KK-KNKWLPKIKEWVDAND--P-GATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 385 kP~iiv~NK~D~d~~---~~-~~~~~~~l~~~~~~~~--~-~~~vi~iSA~~~~gl~~L~~ 438 (561)
+|+++|+||+|.... +. .....+++++++.... + ..+++++||++|.|+.++.+
T Consensus 145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 579999999954210 00 0223455666665431 1 26899999999999987754
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-07 Score=98.22 Aligned_cols=144 Identities=12% Similarity=0.095 Sum_probs=79.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.|.+.|..++|||+|+++|+++-. |++.. ..+.+.+..+.+|||||.++....+...+ +..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~gi----------Ti~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~-~~a------- 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGT----------SSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITAL-NIS------- 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEE----------ESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHH-HTC-------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCE----------EEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHH-HHC-------
Confidence 799999999999999999983311 11111 12333445689999999644322222111 111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCce-EEEec-CChhhhhhhc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ-IYLVN-LSAKDYIKKK 402 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~-iiv~N-K~D~d~~~~~ 402 (561)
|.++.|++ .+ .+..+..+.+..... .+.|. ++|+| |+|. ..+..
T Consensus 85 ---------------------D~ailVvd--~~---------g~~~qt~e~~~~~~~-~~i~~~ivvvNNK~Dl-~~~~~ 130 (370)
T 2elf_A 85 ---------------------DIAVLCIP--PQ---------GLDAHTGECIIALDL-LGFKHGIIALTRSDST-HMHAI 130 (370)
T ss_dssp ---------------------SEEEEEEC--TT---------CCCHHHHHHHHHHHH-TTCCEEEEEECCGGGS-CHHHH
T ss_pred ---------------------CEEEEEEc--CC---------CCcHHHHHHHHHHHH-cCCCeEEEEEEeccCC-CHHHH
Confidence 11111111 00 122222333332222 36777 89999 9965 11101
Q ss_pred cchHHHHHHHHHhcC-CCCeEEe--echhh---hhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDAND-PGATIIP--FSGVF---EHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~-~~~~vi~--iSA~~---~~gl~~L~~~~~ 441 (561)
....+++++++.... ...++++ +||++ +.|+++|.+...
T Consensus 131 ~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 123355666654431 2468999 99999 999988865443
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-06 Score=95.31 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=52.6
Q ss_pred EEEEEEcCCCCHHHHHHHHh---cCC---Cccc------CC------CcccccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLT---KSS---AAAE------NF------PFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~---~~~---~~~~------~~------~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
+|+|+|...+|||||.-+|. |.- ..+. ++ -|.|...... .+.+..|.|+||||......
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~- 82 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA- 82 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH-
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH-
Confidence 58999999999999999995 221 1111 11 1344332221 34456799999999875543
Q ss_pred ccccccccccccccCCEEEEEeccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.....++-+|..++|||+.
T Consensus 83 ------Ev~raL~~~DgavlVVDa~ 101 (638)
T 3j25_A 83 ------EVYRSLSVLDGAILLISAK 101 (638)
T ss_dssp ------HHHHHHTTCSEEECCEESS
T ss_pred ------HHHHHHHHhCEEEEEEeCC
Confidence 2355678899999999985
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.5e-08 Score=108.05 Aligned_cols=71 Identities=8% Similarity=0.021 Sum_probs=42.7
Q ss_pred CHHHH-HHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHH--HHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 369 SNADI-EHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKE--WVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 369 ~~~e~-~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~--~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
...+. .++..+.. .++|+|+|+||+| ++...... ..+.+ .......+.+++++||++|.|+.+|.+...++
T Consensus 202 ~~~d~l~ll~~L~~-~g~pvIlVlNKiD--lv~~~~~~-~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 202 ANSDALKIAKEVDP-QGQRTIGVITKLD--LMDEGTDA-RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp SSCHHHHHHHHHCT-TCSSEEEEEECTT--SSCTTCCS-HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred chhHHHHHHHHHHh-cCCCEEEEEeCcc--cCCcchhh-HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33444 45555443 5799999999995 44322222 22211 00000124578999999999999998877653
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-07 Score=99.12 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+|.+.|..|+|||+|++.|++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 3467999999999999999999985
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.8e-08 Score=106.96 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=38.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc--cchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV--RDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~--~~~~~~~~el~l~Dt~Gi 302 (561)
..+.+.+.|..++|||+|+++|.+..+...... |.+..+ ..+.+.+..+.+|||||.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~---GIT~~i~~~~v~~~~~~i~~iDTPGh 61 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG---GITQHIGAYHVETENGMITFLDTPGH 61 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC---CCCCCSSCCCCCTTSSCCCEECCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC---CeeEeEEEEEEEECCEEEEEEECCCc
Confidence 457899999999999999999998755433321 222111 123334557899999994
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.3e-07 Score=92.53 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=46.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hhhhHhhhcccHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EIINEELRLKDVEHIEK 304 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~~~~el~l~Dt~Gi~~ 304 (561)
..|+++|+||+|||||+|.|++.....+++++ .|.+|+.+. .+.+.++.++||||+.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pf--tT~~~~~g~~~~~~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEF--TTLVTVPGVIRYKGAKIQMLDLPGIID 131 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCS--SCCCEEEEEEEETTEEEEEEECGGGCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCC--ceeeeeeEEEEeCCcEEEEEeCCCccC
Confidence 57999999999999999999998666666655 456777653 55667899999999853
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-07 Score=103.72 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
...|.+.|.+|+|||+|++.|+.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~ 35 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLL 35 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 46799999999999999999973
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.8e-07 Score=90.31 Aligned_cols=158 Identities=16% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc------ccccCc-ccc-----ccCCeEEEEeCCCcccCCcc---c
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF------CTIDPN-ENN-----KVPAFLNVVDIAGLVKGAAE---G 158 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~------~T~~~~-~~~-----~~~~~i~l~DtpG~~~~~~~---~ 158 (561)
..++|+++|.+|||||||+|+|.+.. ...+..++ .|.... .+. .....+.++||||+...... -
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 45789999999999999999998863 22221111 111110 111 12346899999998421100 0
Q ss_pred ccccc-------cccc----------ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhc
Q psy17315 159 QGLGN-------AFLS----------HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDA 216 (561)
Q Consensus 159 ~~~~~-------~~l~----------~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~N 216 (561)
..+.. .++. ....+++++++++++. ..+..++. +.+..+... |+|
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-----------~~Ld~~~~--~~l~~l~~~~~iilV~~ 163 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPLDV--AFMKAIHNKVNIVPVIA 163 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-----------SSCCHHHH--HHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-----------cCCCHHHH--HHHHHHHhcCCEEEEEE
Confidence 01111 1111 1123455666664321 00111111 122222221 899
Q ss_pred cccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 217 KADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 217 K~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
|+|+....... ............. ....+.+|+++| |.+.++..+.+..
T Consensus 164 K~Dl~~~~e~~-~~~~~~~~~~~~~-~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 164 KADTLTLKERE-RLKKRILDEIEEH-NIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp CGGGSCHHHHH-HHHHHHHHHHHHT-TCCCCCCC----------CHHHHHHH
T ss_pred eCCCCCHHHHH-HHHHHHHHHHHHc-CCeEEecCCccc-cccHHHHHHHHHh
Confidence 99997321100 0001112222222 235678899999 9999998887764
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-06 Score=89.90 Aligned_cols=59 Identities=29% Similarity=0.319 Sum_probs=40.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc---CCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF---EDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~---~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
....+.++|.+|+|||+|+|+|.+... ....++..+|||.....+. .+..+.++||||+
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~-~~~~~~liDtPG~ 222 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP-LESGATLYDTPGI 222 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE-CSTTCEEEECCSC
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE-eCCCeEEEeCCCc
Confidence 456799999999999999999998721 1233445566652222222 2335889999997
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-06 Score=90.18 Aligned_cols=69 Identities=6% Similarity=0.135 Sum_probs=32.7
Q ss_pred CCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 368 WSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 368 ~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
+...+..++..+. ...|+|+|+||+|...........+.+.+++... +.+++++||+++.+ .+......
T Consensus 160 l~~~d~~~~~~l~--~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~--~i~~~~~Sa~~~~~-~e~~~~l~ 228 (361)
T 2qag_A 160 LKPLDVAFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH--NIKIYHLPDAESDE-DEDFKEQT 228 (361)
T ss_dssp CCHHHHHHHHHTC--S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC---CCSCCCC----------CHHHH
T ss_pred cchhHHHHHHHhc--cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC--CCCEEeCCCcCCCc-chhHHHHH
Confidence 4444555555443 4789999999995421110111223555555443 67889999999998 55544433
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=5.4e-07 Score=94.72 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+|.+.|..++|||+|++.|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 357999999999999999999985
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-06 Score=94.08 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCc-eEEEecCChhhhhhh--ccchHHHHHHHHHhcCC---CCeEEeechhhhhhhCCCCH
Q psy17315 384 AKT-QIYLVNLSAKDYIKK--KNKWLPKIKEWVDANDP---GATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 384 ~kP-~iiv~NK~D~d~~~~--~~~~~~~l~~~~~~~~~---~~~vi~iSA~~~~gl~~L~~ 438 (561)
+.| +|+|+||+|....+. -+...+++++++....- ..+++++||++|.|+.++.+
T Consensus 144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS
T ss_pred CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc
Confidence 455 999999995421010 01233445555444311 26899999999999988754
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-07 Score=101.26 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+|.++|.+|+|||+|++.|+..
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.7e-06 Score=89.67 Aligned_cols=61 Identities=26% Similarity=0.399 Sum_probs=34.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcc------cccC-cccc-----ccCCeEEEEeCCCcccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFC------TIDP-NENN-----KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~------T~~~-~~~~-----~~~~~i~l~DtpG~~~~ 154 (561)
...++|+++|.+|||||||+|+|+|........++. |... ..+. .....+.++||||+...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 345789999999999999999999876321111111 1110 0011 11235889999999643
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-06 Score=79.87 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+..++++ ..+....+.+|||||..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~ 102 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHV 102 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-----eeecCCeEEEEECCCCc
Confidence 456899999999999999999999865432212112221 11234578899999963
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.7e-06 Score=89.01 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=26.3
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.-.......+.++|.+|+|||++++.|+...
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 333344667889999999999999999998653
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-06 Score=95.62 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.|.+.|..|+|||+|+++|.+..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc
Confidence 3478999999999999999999987543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-05 Score=81.51 Aligned_cols=61 Identities=5% Similarity=-0.034 Sum_probs=37.4
Q ss_pred HHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 373 IEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 373 ~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
...+..... .++|+|+|+||+| +.+......+.+..+... .+.+++++|+.++.++.++..
T Consensus 193 ~~l~~~~~~-~~~~~i~V~nK~D--l~~~~~~~~~~~~~~~~~--~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 193 IKISREVDP-SGDRTFGVLTKID--LMDKGTDAVEILEGRSFK--LKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp HHHHHHSCT-TCTTEEEEEECGG--GCCTTCCSHHHHTTSSSC--CSSCCEEECCCCHHHHHTTCC
T ss_pred HHHHHHhcc-cCCCEEEEEeCCc--cCCCcccHHHHHcCcccc--ccCCeEEEEECChHHhccCCC
Confidence 444544433 4789999999994 443233333333322111 146788899999999887654
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.4e-07 Score=85.10 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=37.9
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.+|.++|+||+|. ........+.+.+.+....+..+++++||++|.|+.++.+...
T Consensus 154 ~~~~iiv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 154 RVADLIVINKVAL--AEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp HTCSEEEEECGGG--HHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred hcCCEEEEecccC--CcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 6899999999954 3211123444555544433467899999999999888755443
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.2e-07 Score=91.20 Aligned_cols=35 Identities=40% Similarity=0.625 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
++++.-....+..+.++|.+|+|||||++.|.+..
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45555556778899999999999999999998653
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7e-05 Score=78.64 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC----C--cccCCCcccccCccc-cccCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS----A--AAENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~----~--~~~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
.+..++++|.+|||||||+|+|+|.. . .+.. +.+|+..... ......+.++|+||+..... ....++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~----~~~~~L~ 142 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERHPYKHPNIPNVVFWDLPGIGSTNF----PPDTYLE 142 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSSCTTEEEEECCCGGGSSC----CHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEEeccccccCCeeehHhhcccchHH----HHHHHHH
Confidence 34579999999999999999999943 1 1111 1122221110 11123689999999864321 1112222
Q ss_pred --ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccC----cCCCCCccHHH----H
Q psy17315 168 --HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKK----KMGPKKTDEGE----K 234 (561)
Q Consensus 168 --~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~----~~~~~~~~~~~----l 234 (561)
.+...|..++ +++...+ ...+ .+...+.....+ |.||.|..- ..++....... +
T Consensus 143 ~~~L~~~~~~~~-lS~G~~~-----------kqrv-~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 143 KMKFYEYDFFII-ISATRFK-----------KNDI-DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HTTGGGCSEEEE-EESSCCC-----------HHHH-HHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HcCCCccCCeEE-eCCCCcc-----------HHHH-HHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 1333455554 5432000 0011 112222222222 556665541 12222222222 2
Q ss_pred HHHh----hh--cCCCcEEEEEc--cCCCCHHHHHHHHHhhccC
Q psy17315 235 KMLL----GR--VGTNLKVGIVG--VPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 235 ~~l~----~~--~~~~~~i~isg--~~~~Gks~l~~~l~~~~~~ 270 (561)
..+. .. ......+.+|+ ..+.|.+.|.+.+.+..++
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 2221 11 12345688899 6677899999999887543
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=97.84 E-value=5.7e-06 Score=88.74 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=35.2
Q ss_pred cCCc-eEEEecCChhhhhhh----ccchHHHHHHHHHhc--CC---CCeEEeechhhhhhhCCCCH
Q psy17315 383 TAKT-QIYLVNLSAKDYIKK----KNKWLPKIKEWVDAN--DP---GATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 383 ~~kP-~iiv~NK~D~d~~~~----~~~~~~~l~~~~~~~--~~---~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+.| +|+|+||+|...... -....+++.+++... +. ..+++++||++|.|+.++.+
T Consensus 179 ~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 179 QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 3667 999999996421110 012233455555432 11 46799999999999998863
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-06 Score=86.75 Aligned_cols=68 Identities=6% Similarity=0.124 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc--chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 368 WSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN--KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 368 ~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~--~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
++..+.+.+..+. ...|+++|+||.|. ....+ ...+++.+++... +.+++++||+++ +++++.....+
T Consensus 141 Ld~~~~~~l~~l~--~~~~iilV~~K~Dl--~~~~e~~~~~~~~~~~~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~ 210 (301)
T 2qnr_A 141 LKPLDVAFMKAIH--NKVNIVPVIAKADT--LTLKERERLKKRILDEIEEH--NIKIYHLPDAES-DEDEDFKEQTR 210 (301)
T ss_dssp CCHHHHHHHHHHT--TTSCEEEEECCGGG--SCHHHHHHHHHHHHHHHHHT--TCCCCCCC----------CHHHHH
T ss_pred CCHHHHHHHHHHH--hcCCEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHc--CCeEEecCCccc-cccHHHHHHHH
Confidence 4444555555443 35699999999954 32111 1234555666655 678899999999 99888665433
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=7.9e-07 Score=97.78 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=32.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+.|+++|+||+|....+ .....+++.+.+. .+..+++++||++|.|+.+|.+..
T Consensus 124 ~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg--~~~~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 124 QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLG--LDPEEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSC--CCGGGCEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEeccCccccC-HHHHHHHHHHhhC--CCcccEEEEEeecCCCchHHHHHH
Confidence 478999999999542211 1112222322211 112358999999999998775443
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=97.82 E-value=6.9e-07 Score=98.35 Aligned_cols=55 Identities=9% Similarity=0.014 Sum_probs=33.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+.|+|+|+||+|....+ .....+++.+.+.. +..+++++||++|.|+.+|.+..
T Consensus 122 ~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~--~~~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGI--DATDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCC--CCTTCEEECTTTCTTHHHHHHHH
T ss_pred CCCCEEEeeeccCccccc-HHHHHHHHHHHhCC--CcceEEEeecccCCCchhHHHHH
Confidence 478999999999543211 11223334333211 12358999999999988775443
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-06 Score=88.57 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=33.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~ 304 (561)
++.+.|..|+||++|++.+.+..+... ......|+... ..+. ....+.+|||||.++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFS-TLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEEc-cEEEEEEEECCCchh
Confidence 378899999999999998876643221 11111121110 1111 124688999999543
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=97.76 E-value=3.4e-06 Score=97.83 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+|.+.|..++|||+|++.|++.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Confidence 457999999999999999999875
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=84.37 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=38.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC---------------CCcccCCCcccccCcccccc-------------CCeEEEEeC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS---------------SAAAENFPFCTIDPNENNKV-------------PAFLNVVDI 148 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~---------------~~~~~~~~~~T~~~~~~~~~-------------~~~i~l~Dt 148 (561)
.-|+|+|.||+|||||+|.|.|. ....-...++|+..+.|.+. ...+.++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 46899999999999999999874 21111122234433444221 236999999
Q ss_pred CCcccCC
Q psy17315 149 AGLVKGA 155 (561)
Q Consensus 149 pG~~~~~ 155 (561)
||+..+.
T Consensus 148 eG~~~~~ 154 (447)
T 3q5d_A 148 QGTFDSQ 154 (447)
T ss_dssp ECCCSSH
T ss_pred Ccccccc
Confidence 9997554
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=6.5e-05 Score=74.26 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|+|.+++..+. .++..++++ ++.. .+...+..+.+|||||+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~ 98 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVV--SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCS--CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCcceeeEEEEEeeCCeEEEEEECCCCC
Confidence 4578999999999999999999987542 222223333 2221 223334568999999973
|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.9e-06 Score=65.17 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=49.9
Q ss_pred eeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 468 QYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 468 i~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
+.+||-. | +...+|+|+|+.|+|+.||+++++.++.|.| .| ++++.+|.+++||+|+|
T Consensus 8 i~v~tP~-G--~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----------------NG--~~v~L~~~L~~gd~VeI 65 (78)
T 3hvz_A 8 VFVFTPK-G--DVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----------------DG--RIVPIDYKVKTGEIIDV 65 (78)
T ss_dssp EEEECTT-S--CEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----------------TT--EEECTTCBCCTTCBEEE
T ss_pred EEEECCC-C--CEEEecCCCCHHHHHHHhhhhhhcceEEEEE-----------------CC--EEcCCCcccCCCCEEEE
Confidence 4556643 3 4456999999999999999999999999995 13 88999999999999998
Q ss_pred Ee
Q psy17315 548 KF 549 (561)
Q Consensus 548 ~~ 549 (561)
--
T Consensus 66 it 67 (78)
T 3hvz_A 66 LT 67 (78)
T ss_dssp EE
T ss_pred Ec
Confidence 53
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00011 Score=82.67 Aligned_cols=79 Identities=18% Similarity=0.072 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC------Ccc------------cCCCcccccCccc--cc-------cCCeEEEEeCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS------AAA------------ENFPFCTIDPNEN--NK-------VPAFLNVVDIA 149 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~------~~~------------~~~~~~T~~~~~~--~~-------~~~~i~l~Dtp 149 (561)
.+|+|+|...+|||||.-+|.-.. ..+ ...-|.|...... .+ .+..|.|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 369999999999999999995211 011 0112444332111 11 13468999999
Q ss_pred CcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 150 GLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 150 G~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
|...... ....+++-+|..++|||+.
T Consensus 94 GHvDF~~-------Ev~~aLr~~DgavlvVDav 119 (709)
T 4fn5_A 94 GHVDFTI-------EVERSLRVLDGAVVVFCGT 119 (709)
T ss_dssp SCTTCHH-------HHHHHHHHCSEEEEEEETT
T ss_pred CCcccHH-------HHHHHHHHhCeEEEEEECC
Confidence 9976553 2345678899999999985
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=9.3e-05 Score=72.83 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=39.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|+|.+++..+. .+...++++ ++.. .+...+..+.+|||||+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~ 95 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVV--RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCS--CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCcceeeEEEEEEECCeeEEEEECCCCC
Confidence 4578999999999999999999987531 222222332 2221 233445578999999963
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.56 E-value=5.5e-05 Score=82.60 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.|.++|.+|+|||||+|+|++..+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 4578999999999999999999998653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00014 Score=76.55 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCC
Q psy17315 368 WSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 368 ~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~ 437 (561)
++..+..++..+. ...|+|+|+||+|...........+.+.+.+... +.+++.+||+++.++.++.
T Consensus 153 L~~~d~~~lk~L~--~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~ 218 (418)
T 2qag_C 153 LKPLDIEFMKRLH--EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLV 218 (418)
T ss_dssp CCHHHHHHHHHHT--TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHH--TCCCCCCC-----------
T ss_pred CCHHHHHHHHHHh--ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHc--CCeEEeCCCCCCcCHHHHH
Confidence 4555666666554 3789999999995421111112234555555554 6788999999988877643
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=6.6e-06 Score=78.71 Aligned_cols=56 Identities=9% Similarity=0.028 Sum_probs=38.3
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.+|.++|+||+|. ........+.+.+++....++.+++++||++|.|+.++.+...
T Consensus 164 ~~~~iiv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 219 (226)
T 2hf9_A 164 KTADLIVINKIDL--ADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIE 219 (226)
T ss_dssp TTCSEEEEECGGG--HHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred hcCCEEEEecccc--CchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHH
Confidence 5789999999954 3211223455555555433467899999999999988755443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00013 Score=76.71 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=37.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC---ccc-CCCcccccCccccc----cCCeEEEEeCCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA---AAE-NFPFCTIDPNENNK----VPAFLNVVDIAGLVK 153 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~---~~~-~~~~~T~~~~~~~~----~~~~i~l~DtpG~~~ 153 (561)
++++|+|.+|+|||||+|+|+|... ... ..|+.++....... ....+.++|+||+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 3499999999999999999999752 111 13444443211111 112688999999864
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00014 Score=76.88 Aligned_cols=84 Identities=23% Similarity=0.179 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC------C-Ccc------------------------cCCCcccccCccc------cc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS------S-AAA------------------------ENFPFCTIDPNEN------NK 138 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~------~-~~~------------------------~~~~~~T~~~~~~------~~ 138 (561)
+..|+++|.|||||||+++.|.+. . .-+ .+.+++|.++... ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999762 2 101 1111144443211 11
Q ss_pred cCCeEEEEeCCCcccCCccccccccc--cccccccCCEEEEEeccc
Q psy17315 139 VPAFLNVVDIAGLVKGAAEGQGLGNA--FLSHISACDAIFHLCKEK 182 (561)
Q Consensus 139 ~~~~i~l~DtpG~~~~~~~~~~~~~~--~l~~i~~~D~il~VvD~~ 182 (561)
....+.++||||...... .+... .+..+..+|.+++|+|+.
T Consensus 179 ~~~D~vIIDT~G~~~~~~---~l~~~l~~i~~~~~~d~vllVvda~ 221 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEK---GLLEEMKQIKEITNPDEIILVIDGT 221 (432)
T ss_dssp SSCSEEEEECCCSCSSHH---HHHHHHHHTTSSSCCSEEEEEEEGG
T ss_pred hCCCEEEEcCCCCccccH---HHHHHHHHHHHHhcCcceeEEeecc
Confidence 345799999999874321 11111 123344689999999875
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.42 E-value=5.7e-06 Score=92.95 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...|.+.|.+|+|||+|++.|+..
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~ 33 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYY 33 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999963
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=1.3e-05 Score=89.71 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+.|..|+|||+|++.|....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 45689999999999999999999764
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=97.38 E-value=1.4e-05 Score=86.87 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....|.+.|.+|+|||+|++.|+..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 3468999999999999999999874
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00022 Score=75.27 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+++|.|||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999999997
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00049 Score=67.13 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.++|+.|+|||++.+.+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999843
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00022 Score=70.64 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
++++++|.+|+|||||+|+|+|..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999865
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=97.04 E-value=4.5e-05 Score=85.66 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...|.+.|..|+|||+|++.|...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~ 35 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYY 35 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999999854
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00041 Score=73.19 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..++++|.+||||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999997
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=2.2e-05 Score=81.79 Aligned_cols=67 Identities=40% Similarity=0.736 Sum_probs=36.1
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc--------hhhh----------hHhhhccc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD--------IEII----------NEELRLKD 298 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~--------~~~~----------~~el~l~D 298 (561)
++........+.++|.+|+|||||+|.|++..+..++++++ |.+|... +... ...+.+||
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~t--Ti~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvD 92 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFC--TIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVD 92 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEE
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCcc--ccCceeEEEEECCccceeeccccCcccccccccEEEE
Confidence 44555677889999999999999999999986655555542 2233321 1110 12388999
Q ss_pred HHHHHHH
Q psy17315 299 VEHIEKE 305 (561)
Q Consensus 299 t~Gi~~~ 305 (561)
|||+.+.
T Consensus 93 tpGl~~~ 99 (396)
T 2ohf_A 93 IAGLVKG 99 (396)
T ss_dssp CCC----
T ss_pred CCCcccc
Confidence 9998653
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00021 Score=80.38 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...|.+.|..|+|||+|++.|...
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~ 33 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFY 33 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00037 Score=65.58 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=42.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLV 152 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~ 152 (561)
+..++|+|.+|||||||+|+|.+.. ......+.+|+.+..+...+....++|.+.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMT 77 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhh
Confidence 4568999999999999999999764 23456778899887654444456677776654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00087 Score=70.30 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+++.|.+|+|||||+|.|.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 345589999999999999999999965
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=7.5e-05 Score=78.49 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=29.4
Q ss_pred HHHHhhhcCCCcE--EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 234 KKMLLGRVGTNLK--VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 234 l~~l~~~~~~~~~--i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.++.-.+..+.. ++++|.+|+|||||+|.|.+..+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 5566666677777 99999999999999999999854
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0041 Score=62.41 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=52.3
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCC---------------C--
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMG---------------P-- 226 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~---------------~-- 226 (561)
..++++|++++|+|++.++ ..++.++.+...+.....+ |+||+|+.+... .
T Consensus 75 ~~~~naD~vliV~d~~~p~---------~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~ 145 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPE---------FNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDV 145 (302)
T ss_dssp TEEESCCEEEEEECSTTTT---------CCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHhcCEEEEEEECCCCC---------CCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeE
Confidence 4579999999999876321 0122233332233332222 899999863210 0
Q ss_pred --CCccHH-HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 227 --KKTDEG-EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 227 --~~~~~~-~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.++... .++.+... ..+..+.++|.+|+|||||+|.|. ..
T Consensus 146 ~~~SA~~g~gi~~L~~~-l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 146 LKVSAKTGEGIDELVDY-LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EECCTTTCTTHHHHHHH-TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEECCCCCCHHHHHhh-ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 011000 12222222 235688999999999999999999 54
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00032 Score=72.15 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+.++|...+||||++..+.
T Consensus 30 ~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHHH
Confidence 446899999999999999999886
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00084 Score=76.96 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....|.++|..|+|||+|++.|...
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999875
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0013 Score=72.71 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.++++|.+|+|||||+++|+|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00086 Score=69.06 Aligned_cols=59 Identities=34% Similarity=0.616 Sum_probs=37.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhh-----------------HhhhcccHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIIN-----------------EELRLKDVEHIEK 304 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~-----------------~el~l~Dt~Gi~~ 304 (561)
..++.++|.+|+|||+|+|+|++..+..++++++ |++|... +.+.+ ..+.+|||||+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~t--Ti~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFC--TIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCC--CCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc--eECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 3579999999999999999999986555555542 3333322 11111 3588999999754
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0079 Score=60.23 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=60.4
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAK 217 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK 217 (561)
..+.+||| . +.. ..+. -..++++|++++|+|++.++. .++.++.+...+.....+ |+||
T Consensus 63 ~~~~iwD~--q--er~--~~l~---~~~~~~ad~vilV~D~~~~~~---------s~~~l~~~l~~~~~~~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--L--HRK--NLLT---KPHVANVDQVILVVTVKMPET---------STYIIDKFLVLAEKNELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--C--CCS--CEET---TTTEESCCEEEEEECSSTTCC---------CHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CeEEEEEE--c--ccc--ceee---ccccccCCEEEEEEeCCCCCC---------CHHHHHHHHHHHHHCCCCEEEEEeH
Confidence 36899999 2 111 1122 245789999999998863221 122333333333322222 8999
Q ss_pred ccccCcCCC------------------CCccHH-HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 218 ADSKKKMGP------------------KKTDEG-EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 218 ~D~~~~~~~------------------~~~~~~-~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+|+.+.... .++... .++.+... .....+.+.|.+|+|||||+|.|.+..
T Consensus 125 ~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~-l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 125 MDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEY-LKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH-HSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHH-hcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 998643110 000000 01111111 234578899999999999999998864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0076 Score=61.85 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=35.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc--CCCcccccCC----ccccccchhhhhHhhhcccHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF--EDDDVTHVEG----EVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~--~~~~v~~~~g----t~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
.+..+.++|.+|+|||||+|.|.+... ..+.++..+| ++ ....+........+.||+|+.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt-~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTT-TAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccce-EEEEEEEECCCCEecCcccHHH
Confidence 456899999999999999999998753 2333433222 11 1112222222345799999854
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0047 Score=62.09 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..++++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345789999999999999999975
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0013 Score=67.82 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+.++|.+++||||++..|.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999999984
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0013 Score=68.77 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=30.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh----------------------h---hHhhhcccHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI----------------------I---NEELRLKDVE 300 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~----------------------~---~~el~l~Dt~ 300 (561)
+|.++|.+|+|||+|+|++++.....+++++ .|.+|...+.. . ..++.+||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~--tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPF--TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCC--cccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 6899999999999999999998533344433 22344433210 1 1368899999
Q ss_pred HHHH
Q psy17315 301 HIEK 304 (561)
Q Consensus 301 Gi~~ 304 (561)
|+.+
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9854
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0034 Score=57.72 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=27.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPN 134 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~ 134 (561)
+..++++|.+|||||||++.|.+... .....+.+|+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~ 45 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 45 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence 34689999999999999999987531 1233445555543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.002 Score=66.99 Aligned_cols=64 Identities=38% Similarity=0.634 Sum_probs=43.5
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhcc-CCCcccccCCccccccch-hhhh-----------------Hhhhccc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF-EDDDVTHVEGEVNPVRDI-EIIN-----------------EELRLKD 298 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~-~~~~v~~~~gt~dp~~~~-~~~~-----------------~el~l~D 298 (561)
+.....+..+.+.|.+|+|||||+|.|++..+ ..+++++ .|++|..+. ...+ ..+.+||
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~--tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY--ATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS--CCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCc--eeecceeeeeeeCCcchhhhhhhcccccccCcceEEEe
Confidence 44556778999999999999999999999765 4455544 234554331 1111 2367889
Q ss_pred HHHHH
Q psy17315 299 VEHIE 303 (561)
Q Consensus 299 t~Gi~ 303 (561)
|||+.
T Consensus 92 ~pGl~ 96 (392)
T 1ni3_A 92 IAGLT 96 (392)
T ss_dssp TGGGC
T ss_pred ccccc
Confidence 99863
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0058 Score=61.17 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+..++++|.+|+||||+++.|.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999999973
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0056 Score=65.30 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
..+-.++|+|.+|+|||||++.|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3456899999999999999999976
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0072 Score=61.39 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..+--++++|.+|+||||+++.|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999863
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0064 Score=62.39 Aligned_cols=121 Identities=10% Similarity=0.058 Sum_probs=66.4
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhh-ccchhhHhhhHHHHHHHHHHh--cc-h--
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFI-SLNTITIWRNLKLLETRIRDL--RR-S-- 213 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~--~~-~-- 213 (561)
...+.+|||+|..... ..+....++++++++|+|.+..+.... +.......+....+...+... .. +
T Consensus 192 ~~~l~iwDt~GQe~~r-------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 192 DLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp TEEEEEEEECCSGGGG-------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred CeeEEEEeCCCchhhh-------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 4568999999975333 234556789999999999875432211 111112222223333333211 11 1
Q ss_pred -hhccccccCcCC-----------C-CCccHHHHHHHhh-----h-----cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 214 -VDAKADSKKKMG-----------P-KKTDEGEKKMLLG-----R-----VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 214 -v~NK~D~~~~~~-----------~-~~~~~~~l~~l~~-----~-----~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
++||+|+.+..- + +............ . ........+||.+|.|+..+++++.+.
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 899999863210 0 0111222222111 1 123345778999999999999888765
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0022 Score=65.09 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+.++|...+||||++..+.
T Consensus 5 ~~~~klLlLG~geSGKSTi~KQmk 28 (327)
T 3ohm_A 5 RRELKLLLLGTGESGKSTFIKQMR 28 (327)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCccHHHHHHHHH
Confidence 345789999999999999999885
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0018 Score=66.91 Aligned_cols=32 Identities=53% Similarity=0.784 Sum_probs=26.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~ 276 (561)
..+.++|.+|+|||+|+|.|++..+..+++++
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~ 33 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF 33 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC
Confidence 35899999999999999999998655555554
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0014 Score=67.42 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
..+|+.++|..++||||++..+.
T Consensus 8 ~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 8 HIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceeEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999999985
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0079 Score=56.61 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=29.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-C-cccCCCcccccCcc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-A-AAENFPFCTIDPNE 135 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~-~~~~~~~~T~~~~~ 135 (561)
.+.-++++|.+|||||||++.|.+.. . .....+.+|+.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ 49 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPRE 49 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcC
Confidence 44569999999999999999999765 2 33344455555443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0049 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
++++++|.+|+|||||++.|+|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999754
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0074 Score=56.96 Aligned_cols=96 Identities=6% Similarity=-0.110 Sum_probs=56.4
Q ss_pred cccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cc-h---hhccc-cccCcCCCCCccHH
Q psy17315 161 LGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RR-S---VDAKA-DSKKKMGPKKTDEG 232 (561)
Q Consensus 161 ~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~-~---v~NK~-D~~~~~~~~~~~~~ 232 (561)
+...|-.++.++|+||||||+++++.. ...+.++.+...+.+- .. + ++||. |.+.++. ..
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~-------eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams-----~~ 182 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRH-------EWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-----CF 182 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCC-------CHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC-----HH
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHH-------HHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC-----HH
Confidence 333445667899999999999854321 0111111111112111 11 1 67985 6754432 23
Q ss_pred HHHHHh---hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 233 EKKMLL---GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 233 ~l~~l~---~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
++.+.+ ...+.|...++||.+|.|+.+-++||.+..
T Consensus 183 EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 183 YLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 333322 223678899999999999999999998763
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0044 Score=58.01 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+..++++|.+|+|||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0087 Score=59.86 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..++++|.+|+||||+++.|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0047 Score=67.57 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=39.1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchh--------hhhHhhhcccHHHHH
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIE--------IINEELRLKDVEHIE 303 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~--------~~~~el~l~Dt~Gi~ 303 (561)
....+|+++|.+|+|||+|+|.|++..... .+++|+ +...++. ..+..+.++||||+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~----~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF----SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS----CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc----ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 344679999999999999999999874211 223333 2223321 134568999999984
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0072 Score=56.61 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=28.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-C-cccCCCcccccCcc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-A-AAENFPFCTIDPNE 135 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~-~~~~~~~~T~~~~~ 135 (561)
.+.-++++|.||||||||.+.|.... . .....+.+|+.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~ 53 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKRE 53 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCC
Confidence 45679999999999999999997643 1 22233456666543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.015 Score=61.34 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+++|.+||||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999997
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0077 Score=55.95 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=33.8
Q ss_pred EEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEe
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVD 147 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~D 147 (561)
|.|+|.+|||||||++.|.... .-.-..+.||+.+..+...+....+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs 54 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVS 54 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeec
Confidence 7899999999999999998654 223456788887765433333344443
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.012 Score=60.54 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=62.6
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhh-hccchhhHhhhHHHHHHHHHHh--cc-h--
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFF-ISLNTITIWRNLKLLETRIRDL--RR-S-- 213 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~--~~-~-- 213 (561)
...+.+|||||..... ..+....++++++++|+|.+..+... .+.......+....+...+... .. +
T Consensus 200 ~~~l~i~Dt~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp TEEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred CeEEEEEeccchhhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 4578999999985433 23445668999999999987533221 1111222233333333333221 11 1
Q ss_pred -hhccccccCcC--------------CCCCccHHHHHH-H----hhh-----cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 214 -VDAKADSKKKM--------------GPKKTDEGEKKM-L----LGR-----VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 214 -v~NK~D~~~~~--------------~~~~~~~~~l~~-l----~~~-----~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
++||+|+.+.. +.. ........ + ... ......+.+||.++.|+..+++++.+.
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~-~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDP-HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCT-TCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCC-CCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 89999986422 110 11222211 1 111 112345678999999999888888764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.011 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+..++++|.||+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999875
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0048 Score=68.48 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.|+++|...+||+||...|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~ 25 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYN 25 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999654
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0061 Score=62.12 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
+..|+.++|...+||||++..+.
T Consensus 4 ~~~klLLLG~geSGKSTi~KQmk 26 (340)
T 4fid_A 4 KPITVMLLGSGESGKSTIAKQLK 26 (340)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CcceEEEECCCCCcHHHHHHHHH
Confidence 45789999999999999999885
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0047 Score=60.89 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=33.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCccccc----CCcc--cccc-chhhhh--HhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV----EGEV--NPVR-DIEIIN--EELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~----~gt~--dp~~-~~~~~~--~el~l~Dt~Gi 302 (561)
...|++.|.+|+|||+|+|+|.+.......++.. ..|+ +... .+...+ ..+.+|||||+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence 3579999999999999999998775444333110 1111 1111 122222 26889999996
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.035 Score=54.92 Aligned_cols=94 Identities=7% Similarity=-0.104 Sum_probs=56.8
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH---hc-ch---hhcc-ccccCcCCCCCccHHHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD---LR-RS---VDAK-ADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~-~~---v~NK-~D~~~~~~~~~~~~~~l 234 (561)
..+-.+..++|+||+|||+++++... ..+.++.+...+.+ +. .+ ++|| .|.+.++. ..++
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRle-------ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-----~~EI 269 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHE-------WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-----CFYL 269 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCC-------HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-----HHHH
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHH-------HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC-----HHHH
Confidence 33445678899999999998654311 11111111122211 11 12 6786 57864433 2333
Q ss_pred HHHh---hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLL---GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~---~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+ .....+...++||.+|.|+.+-++||.+..
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 3322 223678899999999999999999999863
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0051 Score=64.16 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+.++|...+||||++..+.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 456899999999999999999985
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.016 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+--++|+|.+|||||||++.|.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 345679999999999999999999864
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.025 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..++++|.+|+||||++..|.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999974
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.019 Score=62.37 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..|+|+|..++||+||...|.-
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~ 53 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLL 53 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHH
Confidence 5699999999999999999964
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.015 Score=53.96 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+.-++++|.+|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 456999999999999999999875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=54.75 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+..++|+|.+|+|||||++.|.+.-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.03 Score=57.34 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccc
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
...+.+|||+|..... ..+....++++++++|+|.+.
T Consensus 182 ~v~l~iwDtaGQe~~r-------~~~~~y~~~~~~iI~v~dis~ 218 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNER-------RKWIHLFEGVTAVIFCAAISE 218 (354)
T ss_dssp --EEEEEEECCSTTGG-------GGTGGGCTTEEEEEEEEEGGG
T ss_pred ceeeEEEECCCchhhh-------HHHHHHhCCCCEEEEEEECcc
Confidence 3469999999985433 233456789999999998763
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.038 Score=58.24 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHh
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~ 117 (561)
.-|+|+|.+++|||+|+|.|.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 467899999999999999775
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.029 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..++++|.+|+||||+...|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999999975
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=53.91 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+--++++|.+|+|||||++.|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44569999999999999999999754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.022 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+..++|+|.+|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.018 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..|+++|.||+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.022 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+..++++|.+|+||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.019 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++|+|.+|+|||||++.|.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999999743
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.026 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=16.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh-cCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT-KSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~-~~~ 120 (561)
.+.-++++|.+|+|||||++.|. +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34579999999999999999999 754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.025 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+..++++|.+|+|||||.+.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999854
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.014 Score=62.57 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
...|.++|.+|+||||+.+.|+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999994
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.031 Score=53.31 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.028 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..++++|.||+|||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.031 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44579999999999999999999764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.026 Score=51.79 Aligned_cols=21 Identities=38% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~ 118 (561)
-++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.035 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+..++++|.||+||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999999999999999753
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.033 Score=55.81 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
...+-.++|+|.+|+|||||++.|.|-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 456678999999999999999999875
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.027 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=19.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHh
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~ 117 (561)
+--++++|.+|+|||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4468999999999999999865
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.034 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
+.|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.046 Score=50.94 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
...+..|+|+|.||+||||+.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.029 Score=54.22 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
-.++++|.+|+|||||++.|+|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.035 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45579999999999999999999764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.034 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
++.|+++|.||+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.037 Score=53.46 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++++|.+|+|||||++.|+|-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.13 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=22.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+++.|.+|+|||||+|.|++....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46899999999999999999997643
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.031 Score=52.98 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
+-.++++|..|+|||||++.|+|-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.04 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999999864
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.038 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.039 Score=53.79 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.04 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999864
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.032 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.++++|.+|+|||||++.|++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998754
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.043 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
..|.++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.042 Score=52.63 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|..|+|||||++.|+|-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999864
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.041 Score=54.28 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++|+|.+|+|||||++.|+|-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999999864
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.044 Score=53.59 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++++|.+|+|||||++.|+|-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345579999999999999999999753
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.044 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45579999999999999999999764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.041 Score=49.16 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.7
Q ss_pred cEEEEEEcCCCCHHHHHHHH
Q psy17315 97 LKVGIVGVPNVGKSTFFNVL 116 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L 116 (561)
+-|+++|.||+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.042 Score=53.90 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999999864
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.062 Score=54.35 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhc-cchhhHhhhHHHHHHHHHHhc-ch----
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFIS-LNTITIWRNLKLLETRIRDLR-RS---- 213 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~~---- 213 (561)
...+.+|||+|..... ..+....++++++++|+|.+.-+....+ .+.....+.+..+...+.... ..
T Consensus 166 ~v~l~iwDtgGQe~~R-------~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii 238 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSER-------RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 238 (327)
T ss_dssp TEEEEEEEECCSHHHH-------TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred ceeeEEEEcCCchhHH-------HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE
Confidence 3568999999985433 2345567999999999987643332211 122222333334433332211 11
Q ss_pred -hhccccccC
Q psy17315 214 -VDAKADSKK 222 (561)
Q Consensus 214 -v~NK~D~~~ 222 (561)
++||+|+.+
T Consensus 239 L~~NK~DL~~ 248 (327)
T 3ohm_A 239 LFLNKKDLLE 248 (327)
T ss_dssp EEEECHHHHH
T ss_pred EEEECchhhh
Confidence 899999874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.045 Score=53.36 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|..|+|||||++.|+|-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999864
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.054 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..|.++|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999974
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.042 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
++.|+++|.||+||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.048 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..+-.++++|.+|+|||||++.|+|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557999999999999999999985
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=93.12 E-value=0.046 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568999999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 561 | ||||
| d1jala2 | 85 | d.15.10.2 (A:279-363) YchF GTP-binding protein, C- | 2e-42 | |
| d1ni3a2 | 82 | d.15.10.2 (A:307-388) YchF GTP-binding protein, C- | 3e-40 | |
| d1jala1 | 278 | c.37.1.8 (A:1-278) YchF GTP-binding protein N-term | 5e-38 | |
| d1jala1 | 278 | c.37.1.8 (A:1-278) YchF GTP-binding protein N-term | 6e-31 | |
| d1ni3a1 | 296 | c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter | 2e-33 | |
| d1ni3a1 | 296 | c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter | 9e-29 | |
| d1wxqa1 | 319 | c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr | 2e-22 | |
| d1wxqa1 | 319 | c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr | 1e-20 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 4e-17 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 3e-07 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 1e-16 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 3e-05 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 3e-08 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 6e-07 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 3e-07 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 6e-04 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 7e-06 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 2e-04 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 3e-05 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-04 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 4e-05 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 4e-04 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 5e-05 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 6e-05 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 1e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 0.001 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 2e-04 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.004 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 5e-04 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.001 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 0.002 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.002 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.003 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 0.003 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 0.003 | |
| d1bifa1 | 213 | c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct | 0.004 |
| >d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: G domain-linked domain domain: YchF GTP-binding protein, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Score = 144 bits (366), Expect = 2e-42
Identities = 45/84 (53%), Positives = 61/84 (72%)
Query: 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRA 526
LQ +FTAG EV+AWT+ G AP+AA IHTDFEKGFI AEV+ ++DF + E +
Sbjct: 1 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKE 60
Query: 527 AGKYRQQGRAYTVEDGDIIFFKFN 550
AGK+R +G+ Y V+DGD++ F+FN
Sbjct: 61 AGKWRLEGKDYIVQDGDVMHFRFN 84
|
| >d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: G domain-linked domain domain: YchF GTP-binding protein, C-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 138 bits (350), Expect = 3e-40
Identities = 48/82 (58%), Positives = 64/82 (78%)
Query: 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRA 526
L +FT G+DEV++WTI+KGTKAPQAAG IHTDFEK F++ E+MH+ D ++ +E ACRA
Sbjct: 1 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRA 60
Query: 527 AGKYRQQGRAYTVEDGDIIFFK 548
AGKY +G+ Y +E GDI +K
Sbjct: 61 AGKYLTKGKEYVMESGDIAHWK 82
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Score = 139 bits (351), Expect = 5e-38
Identities = 56/155 (36%), Positives = 75/155 (48%), Gaps = 26/155 (16%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-------------------NN 137
K GIVG+PNVGKST FN LTK+ A N+PFCTI+PN
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHL--CKEKLRNIFFISLNTIT 195
+P + VDIAGLV GA++G+GLGN FL++I DAI H+ C E + I
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVH--VAGKID 120
Query: 196 IWRNLKLLETRIR--DLRRSVDAKADSKKKMGPKK 228
++ + T + DL S + +K
Sbjct: 121 PLDDIDTINTELALADL-DSCERAIQRLQKRAKGG 154
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Score = 119 bits (300), Expect = 6e-31
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 28/200 (14%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R FE+DD+ HV G+++P+ DI+ IN EL L D++ E+ I +++K + GDK+ K E
Sbjct: 105 RCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSV 164
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+ R +++ + N LT K
Sbjct: 165 MEKILPVLENA-----------------------GMIRSVGLDKEELQAIKSYNFLTLKP 201
Query: 387 QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446
+Y+ N++ + + N +L +++E A GA ++P E ++ ++ D+E+ +L
Sbjct: 202 TMYIANVNEDGF--ENNPYLDRVREI--AAKEGAVVVPVCAAIESEIAELDDEEKVEFLQ 257
Query: 447 EQKAT-SVLDKIITQGYKSL 465
+ L+++I GY L
Sbjct: 258 DLGIEEPGLNRVIRAGYALL 277
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 126 bits (318), Expect = 2e-33
Identities = 82/295 (27%), Positives = 123/295 (41%), Gaps = 64/295 (21%)
Query: 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDD---------------DVTHVEG 279
K+ GR G NLK GIVG+PNVGKSTFF +TK + V
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 60
Query: 280 EV--NPVRDIEIINEELRLKDVEHIEKEINKIEKL------------------------- 312
+ + + L + D+ + K + L
Sbjct: 61 DWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAE 120
Query: 313 VQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARY------- 365
+ + + P + + + H + L KI + + A+
Sbjct: 121 IIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIE 180
Query: 366 ---------------GDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIK 410
GDWSN ++E +N L LLTAK IYLVN+S +D++++KNK+LPKIK
Sbjct: 181 KVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIK 240
Query: 411 EWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
+W+D N PG T+IP S FE +L + ++E + S+L KII GY +L
Sbjct: 241 KWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNAL 295
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 113 bits (284), Expect = 9e-29
Identities = 58/113 (51%), Positives = 69/113 (61%), Gaps = 20/113 (17%)
Query: 87 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNE---------- 135
K+ GR G NLK GIVG+PNVGKSTFF +TKS N+P+ TIDP E
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 60
Query: 136 ---------NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLC 179
++VPAFL V DIAGL KGA+ G GLGNAFLSH+ A DAI+ +
Sbjct: 61 DWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 113
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 96.1 bits (238), Expect = 2e-22
Identities = 55/245 (22%), Positives = 89/245 (36%), Gaps = 35/245 (14%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE--------------------- 135
+++G+VG PNVGKSTFF+ T N+PF TI+ N
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 136 -----NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCK-EKLRNIFFI 189
N + +VD+AGLV GA EG+GLGN FL + A+ H+ +
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 190 SLNTITIWRNLKLLETRIRDLRRSVDAKAD---SKKKMGPKKTDEGEKKMLLGRVGTNLK 246
+ +++ LE I + +K +K+ K E L +G N
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEI 306
+ + + DD+ E+ V +I + K +
Sbjct: 181 DVWEAMHKLNLPEDPT-----KWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRL 235
Query: 307 NKIEK 311
+ E+
Sbjct: 236 VREEE 240
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 91.1 bits (225), Expect = 1e-20
Identities = 33/232 (14%), Positives = 64/232 (27%), Gaps = 27/232 (11%)
Query: 254 NVGKSTFFNVLTKRAFEDDDV-THVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKL 312
+ + + A D +PV DIE + E+ + K +K K
Sbjct: 97 DDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKR 156
Query: 313 VQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNAD 372
++ KL+ + + + + + WS D
Sbjct: 157 IKLQKIKLESAIAEH----LSGIGVNENDVWEAMHKLNLPE----------DPTKWSQDD 202
Query: 373 IEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQ 432
+ K + N + ++ + ++ G +IP S E
Sbjct: 203 LLAFASEIRRVNKPMVIAANKADAAS----DEQIKRLVRE--EEKRGYIVIPTSAAAELT 256
Query: 433 LVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQ------LQYFFTAGQDEV 478
L Y+ VL + + ++L L F + G EV
Sbjct: 257 LRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEV 308
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 77.0 bits (188), Expect = 4e-17
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF---LNVVDIAGLVKGA 155
VG+VG PN GKS+ +T++ +PF T+ PN + + DI G+++GA
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 156 AEGQGLGNAFLSHISACDAIFHLC 179
+EG+GLG FL HI+ + ++
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVL 87
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 48.5 bits (114), Expect = 3e-07
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 3/172 (1%)
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEI 306
VG+VG PN GKS+ +T+ + N E L D+ I +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 307 NKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYG 366
++ + L + + V +K ++ A +
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123
Query: 367 DWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDP 418
D + E + L A+ + ++ +SA + V + P
Sbjct: 124 DL--LEEEAVKALADALAREGLAVLPVSALTG-AGLPALKEALHALVRSTPP 172
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 76.1 bits (186), Expect = 1e-16
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF---LNVVDIAGLVKGA 155
VG+VG P+VGKST +V++ + ++ F T+ PN + D+ GL++GA
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRN 199
+G GLG+ FL HI I H+ + +TI +
Sbjct: 64 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEI 306
VG+VG P+VGKST +V++ + D N + D+ + +
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 307 NKIEKLVQR 315
++ L +
Sbjct: 64 HQGVGLGHQ 72
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 51.1 bits (121), Expect = 3e-08
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNE-----NNKVPAFLNVVDIAG 150
L++ IVG PNVGKST N L A + P T D + ++ +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 151 LVKGAAEGQGLGNAFLSHISACDAIFHLC 179
E G+ L I D + +
Sbjct: 61 ETNDLVERLGI-ERTLQEIEKADIVLFVL 88
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 47.3 bits (111), Expect = 6e-07
Identities = 31/152 (20%), Positives = 49/152 (32%), Gaps = 8/152 (5%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304
L++ IVG PNVGKST N L +I I R+ D +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR 364
E N + ++ + E+ + I LF+ + ++ KI +
Sbjct: 61 ETNDL------VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI 114
Query: 365 YGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396
I N L + V +SA
Sbjct: 115 NKVDVVEKINEEEIKNKLGTDRHM--VKISAL 144
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 48.5 bits (114), Expect = 3e-07
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN 137
+ G NVGKST LT P T E
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE 41
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
+ G NVGKST LT +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK 23
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 44.7 bits (104), Expect = 7e-06
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN 134
+ IVG PNVGKST N L + + T
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR 43
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
+ IVG PNVGKST N L +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ 28
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 42.7 bits (99), Expect = 3e-05
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN 137
+KV IVG PNVGKST FN + A P T DP ++
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDE 50
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKR 267
+KV IVG PNVGKST FN + +
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNK 31
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 42.1 bits (97), Expect = 4e-05
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN 137
V IVG PNVGKST FN L K A E+ T DP ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDT 42
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.0 bits (89), Expect = 4e-04
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN L K+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 5e-05
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN 134
+KV I G PN GKS+ N L AA T
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 39
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 6e-05
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 29/173 (16%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304
+KV I G PN GKS+ N L R E V DI ++ + +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGR------------EAAIVTDIAGTTRDVLREHIHIDGM 49
Query: 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR 364
++ I+ R + ++ + + + D E
Sbjct: 50 PLHIIDTAGLREASDEVERI--GIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIA 107
Query: 365 YGDWSNADIEHLNKLNLLTAKTQIY------LVNLSAK---------DYIKKK 402
NK ++ + L+ LSA+ +++K+
Sbjct: 108 RLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQS 160
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN 137
++V G N GKS+ N LT + A N
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 57
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 0.001
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
++V G N GKS+ N LT
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTN 38
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.7 bits (97), Expect = 2e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH---VEGEVNPVRDIEIINEELRLKDV 299
+ L V + G GKS+F N L E++ VE + + D+
Sbjct: 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDL 114
Query: 300 EHIEKEINKIEKLVQR 315
I + +++
Sbjct: 115 PGIGSTNFPPDTYLEK 130
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.4 bits (86), Expect = 0.004
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLT-----KSSAAAENFPFCTIDPNEN 136
+ L V + G GKS+F N L + AA T++ +
Sbjct: 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY 101
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 39.0 bits (89), Expect = 5e-04
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVP 140
V IVG PNVGKST N L A + T +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT 49
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 38.2 bits (87), Expect = 0.001
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST N L
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGV 28
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (85), Expect = 0.002
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLK 297
+K+ ++G VGKS + F +T + + ++ ++I ++++L+
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK-IKTVDINGKKVKLQ 54
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 37.9 bits (87), Expect = 0.002
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD--IEIINEELRLKDVEHI 302
L + ++G VGKS+ N + ++ + E L + D +
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGE--RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL 90
Query: 303 EKEINKIEKLVQRGDKKLKPEYVSEVWF 330
+ + + L + + + +
Sbjct: 91 IEGGYINDMALNIIKSFLLDKTIDVLLY 118
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 37.1 bits (85), Expect = 0.003
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA-ENFPFCTIDPNE 135
L + ++G VGKS+ N + + F P
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM 72
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.003
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLK 297
K+ ++G VGK+ T+ F G ++ +EI E+++L+
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT-IGVDFMIKTVEINGEKVKLQ 57
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.003
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDV 299
T LK+ I+G VGKS+ T F+ + + + ++ +L + D
Sbjct: 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.5 bits (83), Expect = 0.004
Identities = 20/189 (10%), Positives = 46/189 (24%), Gaps = 8/189 (4%)
Query: 249 IVGVPNVGKSTFFNVLTKRAFED-DDVTHVEGEV--NPVRDIEIINEELRLKDVEHIEKE 305
+VG+P GK+ LT+ + E + E ++
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIR 66
Query: 306 INKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARY 365
+ K L E F + +
Sbjct: 67 KQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPE 126
Query: 366 GDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPF 425
+N L + + + +D++++ + + + D + I
Sbjct: 127 VIAANIVQVKLGSPDYVNRDSDEA-----TEDFMRRIECYENSYESLDEEQDRDLSYIKI 181
Query: 426 SGVFEHQLV 434
V + +V
Sbjct: 182 MDVGQSYVV 190
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 100.0 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 100.0 | |
| d1jala2 | 85 | YchF GTP-binding protein, C-terminal domain {Haemo | 100.0 | |
| d1ni3a2 | 82 | YchF GTP-binding protein, C-terminal domain {Fissi | 100.0 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.95 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.75 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.75 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.73 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.72 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.68 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.64 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.63 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.59 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.5 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.49 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.48 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.48 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.47 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.46 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.45 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.43 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.43 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.42 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.4 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.38 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.37 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.35 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.35 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.35 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.34 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.34 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.33 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.33 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.33 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.29 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.28 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.28 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.27 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.27 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.25 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.24 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.23 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.22 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.22 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.22 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.21 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.21 | |
| d1wxqa2 | 76 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.21 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.2 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.2 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.2 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.19 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.19 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.18 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.17 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.17 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.16 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.14 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.13 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.13 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.12 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.12 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.11 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.08 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.06 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.05 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.05 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.03 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.02 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.01 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.01 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 98.99 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 98.96 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.96 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 98.96 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 98.95 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 98.94 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 98.94 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 98.92 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.92 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 98.91 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 98.9 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.89 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 98.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 98.87 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 98.86 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.84 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 98.83 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.81 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 98.81 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.76 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 98.74 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 98.72 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 98.71 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 98.71 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.71 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.7 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 98.68 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 98.67 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 98.62 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.59 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.58 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 98.58 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 98.58 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.57 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.54 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.54 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.52 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.48 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 98.47 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 98.43 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.39 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.39 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.36 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.34 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.33 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 98.32 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 98.3 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.29 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.27 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 98.22 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 98.21 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 98.2 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 97.99 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 97.89 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 97.86 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 97.78 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 97.77 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 97.73 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 97.69 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.64 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 97.6 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 97.55 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 97.38 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 97.38 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.37 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 97.19 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.19 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.12 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.94 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.92 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 96.83 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.82 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 96.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 96.68 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.52 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 96.51 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 96.44 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 95.99 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.99 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.9 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.73 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.57 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.51 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.33 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.14 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.1 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 94.95 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.77 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.61 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.54 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.49 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.41 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 94.31 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 94.31 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.31 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.3 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 94.17 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.17 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 94.16 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.02 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.99 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 93.96 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 93.93 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.91 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.9 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.84 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 93.75 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.75 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 93.71 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.7 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.7 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 93.68 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 93.47 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.38 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.33 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.31 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 93.3 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.3 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.28 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 93.24 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 93.14 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.13 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 93.06 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 93.02 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 93.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 93.0 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.98 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 92.92 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.87 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.79 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.55 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.52 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.42 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.36 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 92.15 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.0 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.52 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 91.38 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.04 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.96 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.68 | |
| d1tkea1 | 62 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 90.67 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.34 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.09 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 89.66 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.13 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.75 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 88.55 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 87.62 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.27 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.58 | |
| d1nyra2 | 59 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 86.29 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.99 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 85.73 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 85.57 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.49 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 85.46 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 85.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.11 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 84.92 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 84.92 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 84.74 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 84.53 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 84.46 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 84.42 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 84.29 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.17 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 83.66 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 83.43 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.94 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 82.93 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 82.76 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 82.0 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 81.96 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 81.82 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 81.68 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 81.68 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.56 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 81.2 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 81.19 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 80.78 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 80.51 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 80.18 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 80.11 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 80.09 |
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=1.7e-38 Score=320.92 Aligned_cols=274 Identities=49% Similarity=0.866 Sum_probs=228.3
Q ss_pred hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc-------------------ccCCeEEEEeC
Q psy17315 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN-------------------KVPAFLNVVDI 148 (561)
Q Consensus 89 ~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~-------------------~~~~~i~l~Dt 148 (561)
.++|.+.+|+||+||+||||||||||+||+.. +.++++||||.+|+.+. ..+..+.++|.
T Consensus 3 ~~~~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~Dv 82 (296)
T d1ni3a1 3 QWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 82 (296)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred ccCCCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeec
Confidence 35677788999999999999999999999887 57999999999998872 13457999999
Q ss_pred CCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCC
Q psy17315 149 AGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKK 228 (561)
Q Consensus 149 pG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~ 228 (561)
||++++++++.|++++|++++++||+++||||+
T Consensus 83 aGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~----------------------------------------------- 115 (296)
T d1ni3a1 83 AGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRA----------------------------------------------- 115 (296)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEEC-----------------------------------------------
T ss_pred cccccccccccccHHHHHHHhhccceeEEEEec-----------------------------------------------
Confidence 999999999999999999999999999999954
Q ss_pred ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHH
Q psy17315 229 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINK 308 (561)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~ 308 (561)
|.+..++++.|+.||++|+.+++.|+.+||..-+++++.+
T Consensus 116 ----------------------------------------f~d~~i~~~~g~~dP~~Di~~I~~EL~l~d~~~iek~~~k 155 (296)
T d1ni3a1 116 ----------------------------------------FDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEG 155 (296)
T ss_dssp ----------------------------------------CCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------cCCCCCCCCCCCcCcchhhhhhhhhHHHhhHHHhhHHHHH
Confidence 3556678888999999999999999999999999999988
Q ss_pred HHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceE
Q psy17315 309 IEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQI 388 (561)
Q Consensus 309 l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~i 388 (561)
+.+....+.+...... .. .....+..+.+.+... ..+.+...|+++|...+..+.+++.||++
T Consensus 156 l~K~~k~~~~~~~~~~-~~---------------~~~~~l~~~~~~L~~~-~~~~~~~~~~~~e~~~l~~~~llt~KP~i 218 (296)
T d1ni3a1 156 LRKITSRGANTLEMKA-KK---------------EEQAIIEKVYQYLTET-KQPIRKGDWSNREVEIINSLYLLTAKPVI 218 (296)
T ss_dssp HHHTTCCSSCSSSHHH-HH---------------HHHHHHHHHHHHHHTT-CSCGGGSCCCHHHHHHHHTTCCGGGSCEE
T ss_pred HHHHHhhccchhhhhh-hh---------------cchhhhhHhhhhhhcc-ccccccccccHHHHHHHHHhhhhcCCCee
Confidence 8776544333221111 00 1114566667777652 34566678999999999999999999999
Q ss_pred EEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccC
Q psy17315 389 YLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQ 466 (561)
Q Consensus 389 iv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~ 466 (561)
+|+|+.|.+.....+.+.+++.+++....++..+|++||+.+..|.+|.++++.+|++.+|.+++++++|+..|++|+
T Consensus 219 ~v~Nv~E~~~~~~~n~~~~~v~~~~~~~~~~~~vi~isa~~E~eL~~l~~eE~~e~l~~lg~e~gL~rlIr~~y~lLn 296 (296)
T d1ni3a1 219 YLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALN 296 (296)
T ss_dssp EEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred eeccccchhhhhhhhHHHHHHHHHHHhhCCCCeEEEEEHHHHHHHhCCCHHHHHHHHHHcCChhHHHHHHHHHHHhhC
Confidence 999999877665567788888888877656778999999999999999999999999999978899999999999885
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=3.3e-38 Score=315.99 Aligned_cols=257 Identities=37% Similarity=0.707 Sum_probs=207.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-------------------ccCCeEEEEeCCCcccCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-------------------KVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-------------------~~~~~i~l~DtpG~~~~~~ 156 (561)
+++||+||+||||||||||+||+..+.+++|||||.+|+.|. .++..+.++|+||++++++
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 589999999999999999999999999999999999999982 2356799999999999999
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
++.|++++||+++++||+|+||||
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr-------------------------------------------------------- 105 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVR-------------------------------------------------------- 105 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEE--------------------------------------------------------
T ss_pred cCCCccHHHHHHHHhccceEEEee--------------------------------------------------------
Confidence 999999999999999999999994
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
+|.+.+++++.|++||++|+++++.||.+||...++++++++.+....+
T Consensus 106 -------------------------------~f~~~di~~~~g~~dP~~Die~I~~EL~l~Dle~lek~~ekl~k~~k~~ 154 (278)
T d1jala1 106 -------------------------------CFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGG 154 (278)
T ss_dssp -------------------------------CSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------------------------------ccCCCCCcCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccc
Confidence 3456667788899999999999999999999999999999988776544
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
.+....+. ..+..+...+.. ..+.+...++.++...+..+.+++.||+++++|..+.
T Consensus 155 ~~~~~~~~---------------------~~l~~~~~~l~~--~~~i~~~~~~~~e~~~l~~l~lLt~KP~i~v~Nv~E~ 211 (278)
T d1jala1 155 DKEAKFEL---------------------SVMEKILPVLEN--AGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNED 211 (278)
T ss_dssp CHHHHHHH---------------------HHHHHHHHHHHT--TCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTT
T ss_pred cchhhhHH---------------------HHHHHHhhhccc--cceeecccCChhHhHHHHhhhhhhcchhhhhhccccc
Confidence 33332222 566667777777 7777878899999999999999999999999998654
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHcccC
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSLQ 466 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~ 466 (561)
+. . .+...+++.++.... +..+|++||+.+..|.+|.++++.+|++++| .+++++++|++.|++|+
T Consensus 212 ~~-~-~~~~~~~l~~~~~~~--~~~vI~isa~iE~el~~L~~eE~~efL~~~gl~e~gl~klIk~gy~lLn 278 (278)
T d1jala1 212 GF-E-NNPYLDRVREIAAKE--GAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278 (278)
T ss_dssp CS-S-SCHHHHHHHHHHHHT--TCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT
T ss_pred cc-c-ccHHHHHHHHHHHhc--CCeEEEeEHHHHHHHHcCCHHHHHHHHHHcCCChhhHHHHHHHHHHhhC
Confidence 32 2 355677787776654 6789999999999999999999999999998 89999999999999885
|
| >d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: G domain-linked domain domain: YchF GTP-binding protein, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=1.2e-37 Score=243.42 Aligned_cols=85 Identities=53% Similarity=0.976 Sum_probs=84.1
Q ss_pred ceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEE
Q psy17315 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIF 546 (561)
Q Consensus 467 li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~ 546 (561)
|++|||+||.|+|||++++|+|||++||.|||||+||||+|||++|+||+++||+++||++|+.|++||||+|+|||||+
T Consensus 1 L~tFfT~G~~E~raWti~~G~~Ap~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~~k~~Gk~r~eGKdYiv~DGDii~ 80 (85)
T d1jala2 1 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMH 80 (85)
T ss_dssp EEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CcceecCCCCeeEEeecccccchhhhhCceechhhhCcEEEEEEcHHHHHHcCCHHHHHHcCcchhhCCCCcEeCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q psy17315 547 FKFNA 551 (561)
Q Consensus 547 ~~~~~ 551 (561)
|+|||
T Consensus 81 F~fNV 85 (85)
T d1jala2 81 FRFNV 85 (85)
T ss_dssp EESCC
T ss_pred EEecC
Confidence 99997
|
| >d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: G domain-linked domain domain: YchF GTP-binding protein, C-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=4e-36 Score=232.67 Aligned_cols=82 Identities=59% Similarity=1.048 Sum_probs=80.9
Q ss_pred ceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEE
Q psy17315 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIF 546 (561)
Q Consensus 467 li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~ 546 (561)
|++|||+||+|+|||++++|++||++||.|||||+||||+|||++|+||+++|||++||++|+.|++||||+|+|||||+
T Consensus 1 LitffT~G~~EvraWti~~g~~Ap~AAG~IHsDfekgFIrAEvi~~~D~i~~g~~~~~k~~Gk~r~eGKdYiv~DGDVi~ 80 (82)
T d1ni3a2 1 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAH 80 (82)
T ss_dssp EEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEE
T ss_pred CceEEcCCCCceeEEEeccccchHHHhhhhhHHHhhccEEEEEecHHHHHHcCCHHHHHHhCchhhcCCcceEeCCcEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q psy17315 547 FK 548 (561)
Q Consensus 547 ~~ 548 (561)
||
T Consensus 81 Fr 82 (82)
T d1ni3a2 81 WK 82 (82)
T ss_dssp CC
T ss_pred eC
Confidence 86
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=5.3e-29 Score=253.55 Aligned_cols=276 Identities=26% Similarity=0.365 Sum_probs=149.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--------------------------cCCeEEEEeCCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--------------------------VPAFLNVVDIAG 150 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--------------------------~~~~i~l~DtpG 150 (561)
|+||+||+||||||||||+||+.++.+++|||||.+|+.|.. .+..+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 689999999999999999999999999999999999877621 113599999999
Q ss_pred cccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCcc
Q psy17315 151 LVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTD 230 (561)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~ 230 (561)
++++.+.+.+++.+|+.+++++|+++||||+..
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~----------------------------------------------- 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG----------------------------------------------- 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC-----------------------------------------------
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc-----------------------------------------------
Confidence 999999899999999999999999999997631
Q ss_pred HHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHH
Q psy17315 231 EGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIE 310 (561)
Q Consensus 231 ~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~ 310 (561)
......++.+..||.++++++..++.+||...+++++.++.
T Consensus 114 ---------------------------------------~~d~~~~~~~~~dp~~d~~~i~~eL~~~~~~~~~k~~~~l~ 154 (319)
T d1wxqa1 114 ---------------------------------------KTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFA 154 (319)
T ss_dssp ---------------------------------------CBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred ---------------------------------------cccccccccccccHHHHHHHHHHHHHHhhHHHhhhhhhhhh
Confidence 01111234466789999999999999999999988887776
Q ss_pred HHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEE
Q psy17315 311 KLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYL 390 (561)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv 390 (561)
+......... ....... ..........+.. .+... ..+.....|..++...+.....++.+|++++
T Consensus 155 K~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~----~l~~~-~l~~~~~~~~~~e~~~~~~~~~~~~kP~~~v 220 (319)
T d1wxqa1 155 KRIKLQKIKL-ESAIAEH--------LSGIGVNENDVWE----AMHKL-NLPEDPTKWSQDDLLAFASEIRRVNKPMVIA 220 (319)
T ss_dssp STTTSSCCCH-HHHHHHH--------TGGGTCCHHHHHH----HHHHT-TCCSCGGGCCHHHHHHHHHHHHHHHSCEEEE
T ss_pred hhccccchhH-HHHHHHH--------HHHHHhhHHHHHH----HHHhc-CCcchhhhcCHHHHHHhHHHhhhhcCchhhh
Confidence 5432221111 1110000 0001112222222 22221 1122334678888888777777789999999
Q ss_pred ecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHccc-----
Q psy17315 391 VNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL----- 465 (561)
Q Consensus 391 ~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l----- 465 (561)
+||.|.+. .+..+++.+..... +..++++||..+..|.++.++...+|+........+..+....+..|
T Consensus 221 ~Nk~d~~~----~e~~~~~~~~~~~~--~~~vi~~sa~~E~~L~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~l~~i~e 294 (319)
T d1wxqa1 221 ANKADAAS----DEQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKE 294 (319)
T ss_dssp EECGGGSC----HHHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHH
T ss_pred cccccchh----hHHHHHHHHHHhhc--CCEEEEecHHHHHHHHHhHHHHHHHHhcccchhhhhHHHhHHHHHHHHHHHH
Confidence 99985422 23344444444433 67899999999999988866543333221111122333333333332
Q ss_pred -CceeccccCCCce
Q psy17315 466 -QLQYFFTAGQDEV 478 (561)
Q Consensus 466 -~li~~~t~~~~ev 478 (561)
.|.+|||.|+.|+
T Consensus 295 ~~L~~~~ttGv~ev 308 (319)
T d1wxqa1 295 KVLDRFGSTGVQEV 308 (319)
T ss_dssp HHTSSSSSCSHHHH
T ss_pred HhhhhccCcCHHHH
Confidence 2567888875554
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=8e-25 Score=217.42 Aligned_cols=141 Identities=26% Similarity=0.359 Sum_probs=103.6
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|||+|||+| ++|+||.|++ +..+||++ +||++++..++|.++|+..+... .++....+.
T Consensus 16 ~DvIl~V~DaR~P------~ss~~~~l~~----~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~ 85 (273)
T d1puja_ 16 IDIVYELVDARIP------MSSRNPMIED----ILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 85 (273)
T ss_dssp CSEEEEEEETTST------TTTSCHHHHH----HCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred CCEEEEEEECCCC------CCCCCHHHHH----HHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCc
Confidence 4789999999999 9999999999 77899998 99999999999999999887766 555554444
Q ss_pred CCc---------hhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKT---------DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~---------~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
... ...+.....+....+++|++||+||||||||+|+|.+.+ +.+++.||+|++.+. ......++++||
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~-i~~~~~~~l~DT 164 (273)
T d1puja_ 86 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW-VKVGKELELLDT 164 (273)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC-EEETTTEEEEEC
T ss_pred cccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE-EECCCCeEEecC
Confidence 431 111222233445577999999999999999999999988 899999999999765 566778999999
Q ss_pred CCcccCCcc
Q psy17315 149 AGLVKGAAE 157 (561)
Q Consensus 149 pG~~~~~~~ 157 (561)
||++.+...
T Consensus 165 PGi~~p~~~ 173 (273)
T d1puja_ 165 PGILWPKFE 173 (273)
T ss_dssp CCCCCSCCC
T ss_pred CCccccCCc
Confidence 999977643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=2.3e-19 Score=166.09 Aligned_cols=162 Identities=15% Similarity=0.041 Sum_probs=101.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCcccc--------cccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQ--------GLGNAFLSHI 169 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~--------~~~~~~l~~i 169 (561)
+|+++|.||||||||||+|+|.++.++++||+|++..... ...+.++||||+........ .+.......+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccccc--cccceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 6999999999999999999999888999999999875532 33588999999853221111 1112234556
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc----
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV---- 241 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~---- 241 (561)
+.+|++++|+|++........ .........+. +.+.+.+...+ |+||+|+.+.. ......+....
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~------~~~~~~~~~~~~~~~ 152 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKR-WEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV------QEVINFLAEKFEVPL 152 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHH-HHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH------HHHHHHHHHHHTCCG
T ss_pred cccchheeeeeccccchhhhh-hhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhH------HHHHHHHHHHhcccc
Confidence 789999999998632111000 00011111121 22334444443 89999987321 11122111111
Q ss_pred --CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 --GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 --~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+++|+++|.|++.|+++|.+..
T Consensus 153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l 181 (184)
T d2cxxa1 153 SEIDKVFIPISAKFGDNIERLKNRIFEVI 181 (184)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 122468899999999999999998764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=2.1e-18 Score=159.38 Aligned_cols=154 Identities=26% Similarity=0.423 Sum_probs=108.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
.|+++|.||||||||+|+|++....+++.++.|.....+. ..+..+.++||||+....+....+...++.++..+|+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 4999999999999999999999877778888887766542 2345799999999987766666677788899999999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHH-----hcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-----LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+++++|.... ....++.....+.. ...+ |+||+|+.... ....+.+.... ...+.
T Consensus 83 ~~~~~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~-----~~~~~~~~~~~-~~~~~ 145 (180)
T d1udxa2 83 LLYVLDAADE-----------PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE-----AVKALADALAR-EGLAV 145 (180)
T ss_dssp EEEEEETTSC-----------HHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH-----HHHHHHHHHHT-TTSCE
T ss_pred hhhhcccccc-----------cccchhhhhhhhhccccccchhhhhhhhhhhhhhhHH-----HHHHHHHHHHh-cCCeE
Confidence 9999986421 11122222222211 1122 89999998431 11222222221 35578
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.|+..|.+..
T Consensus 146 ~~iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 146 LPVSALTGAGLPALKEALHALV 167 (180)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999997764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=2.4e-18 Score=158.78 Aligned_cols=158 Identities=20% Similarity=0.125 Sum_probs=111.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc-cccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG-QGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~-~~~~~~~l~~i~~~ 172 (561)
..|+++|.||||||||+|+|++.. ..+++.|++|....... ..+..+.++||||+....... ..+......++++|
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a 85 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 85 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence 369999999999999999999988 67889999998876542 234579999999997654332 22334446678999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|++... ...-..+.+.+...... |+||+|+.+. .....+.+.........+
T Consensus 86 d~il~v~D~~~~~-----------~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~ 148 (178)
T d1wf3a1 86 NAVVWVVDLRHPP-----------TPEDELVARALKPLVGKVPILLVGNKLDAAKY------PEEAMKAYHELLPEAEPR 148 (178)
T ss_dssp SEEEEEEETTSCC-----------CHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS------HHHHHHHHHHTSTTSEEE
T ss_pred cceeeeechhhhh-----------cccccchhhheeccccchhhhhhhcccccccC------HHHHHHHHHhhcccCceE
Confidence 9999999876311 00011222333332221 8999999742 122344455555666778
Q ss_pred EEEccCCCCHHHHHHHHHhhccCC
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
.+|+++|.|++.|+++|.+..++.
T Consensus 149 ~iSA~~~~gi~~L~~~i~~~lpe~ 172 (178)
T d1wf3a1 149 MLSALDERQVAELKADLLALMPEG 172 (178)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred EEecCCCCCHHHHHHHHHHhCCCC
Confidence 899999999999999999987653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=1.3e-18 Score=161.57 Aligned_cols=158 Identities=23% Similarity=0.378 Sum_probs=109.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
.|+++|.||||||||+|+|++....+++.+++|+++..+.. ....+.++||||+....+....+..+++.+++.++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 59999999999999999999988888889999988776532 234689999999976655556677778888999999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-----cch---hhccccccCcCCCCCccHHHHHHHhhhc-CCCc
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV-GTNL 245 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~-~~~~ 245 (561)
++++++..... .................. ..+ |+||+|+... ...++.+.... ...+
T Consensus 83 i~~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-------~~~~~~~~~~~~~~~~ 148 (185)
T d1lnza2 83 IVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-------AENLEAFKEKLTDDYP 148 (185)
T ss_dssp EEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-------HHHHHHHHHHCCSCCC
T ss_pred hhheeeecccc-------cchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH-------HHHHHHHHHHhccCCc
Confidence 99999654211 001111111111111111 111 8999999732 22234444333 3456
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+||++|.|++.|++++.+...
T Consensus 149 v~~iSA~~g~Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 149 VFPISAVTREGLRELLFEVANQLE 172 (185)
T ss_dssp BCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhh
Confidence 789999999999999999988753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=7.6e-18 Score=152.18 Aligned_cols=153 Identities=25% Similarity=0.245 Sum_probs=104.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc--ccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG--QGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~i~~ 171 (561)
+||+++|.||||||||+|+|+|.+ ..+++.||+|+...... ..+..+.++||||+....... ......++..++.
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 589999999999999999999987 77899999998876653 234578899999987544321 1122456777899
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-hcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIV 250 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~is 250 (561)
+|++++|+|++.... .. ...+...+.. ....+.||+|..... ....+..... ...+.+.+|
T Consensus 81 ad~ii~v~d~~~~~~--------~~---~~~~~~~~~~~~~i~~~~k~d~~~~~-----~~~~~~~~~~--~~~~~~~vS 142 (160)
T d1xzpa2 81 ADIVLFVLDASSPLD--------EE---DRKILERIKNKRYLVVINKVDVVEKI-----NEEEIKNKLG--TDRHMVKIS 142 (160)
T ss_dssp CSEEEEEEETTSCCC--------HH---HHHHHHHHTTSSEEEEEEECSSCCCC-----CHHHHHHHHT--CSTTEEEEE
T ss_pred CCEEEEEEeCCCCcc--------hh---hhhhhhhcccccceeeeeeccccchh-----hhHHHHHHhC--CCCcEEEEE
Confidence 999999998863210 00 0011111111 111189999998542 2222322222 345689999
Q ss_pred ccCCCCHHHHHHHHHhh
Q psy17315 251 GVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~ 267 (561)
+++|.|++.|+++|.++
T Consensus 143 A~~g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 143 ALKGEGLEKLEESIYRE 159 (160)
T ss_dssp GGGTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 99999999999999764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.7e-17 Score=149.93 Aligned_cols=151 Identities=21% Similarity=0.213 Sum_probs=105.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccc-cccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQ-GLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~i~~ 171 (561)
+++|+++|.||||||||+|+|++.. ..++..|++|+...... ..+..+.++||||+........ .........++.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 5789999999999999999999988 56788999998866542 2445799999999976443211 111223455788
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+|++++++|+.... ..+..+.+.+.+...... |.||+|+.+.... .........
T Consensus 81 ~d~~i~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~-----------~~~~~~~~~ 139 (161)
T d2gj8a1 81 ADRVLFMVDGTTTD----------AVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-----------MSEVNGHAL 139 (161)
T ss_dssp CSEEEEEEETTTCC----------CCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----------EEEETTEEE
T ss_pred ccccceeecccccc----------chhhhhhhhhhhhhcccccceeeccchhhhhhhHHH-----------HHHhCCCcE
Confidence 99999999875322 122223333333333222 8999998753211 123345678
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+||++|.|++.|+++|.+.
T Consensus 140 ~~iSAk~~~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 140 IRLSARTGEGVDVLRNHLKQS 160 (161)
T ss_dssp EECCTTTCTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=1.7e-16 Score=146.86 Aligned_cols=162 Identities=20% Similarity=0.139 Sum_probs=100.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCc-----cccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAA-----EGQGLGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~-----~~~~~~~~~l 166 (561)
..++|+++|.||||||||+|+|++.. ..+++.+++|+....+. ..+..+.++||||+..... .........+
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 86 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence 46899999999999999999999988 67889999998876542 2356789999999864221 1122333456
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCC-ccHHHHHHHhhhcC
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKK-TDEGEKKMLLGRVG 242 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~-~~~~~l~~l~~~~~ 242 (561)
..++.+|++++|+|+.... ......+...+.....+ +.||+|+........ .....+........
T Consensus 87 ~~~~~~dvii~v~d~~~~~-----------~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (186)
T d1mkya2 87 DSIEKADVVVIVLDATQGI-----------TRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID 155 (186)
T ss_dssp HHHHHCSEEEEEEETTTCC-----------CHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred HHHhcCCEEEEeecccccc-----------hhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccC
Confidence 6788999999999875211 11112222333333333 899999874332110 00111222222234
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+.+||++|.|++.|+++|.+.
T Consensus 156 ~~~i~~vSa~~g~gv~~L~~~i~~~ 180 (186)
T d1mkya2 156 YSPLIFTSADKGWNIDRMIDAMNLA 180 (186)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 5578999999999999999999764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=1.5e-16 Score=145.58 Aligned_cols=155 Identities=25% Similarity=0.309 Sum_probs=93.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccc--cccccccccccccC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEG--QGLGNAFLSHISAC 172 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~i~~~ 172 (561)
+|+++|.||||||||+|+|+|.. ..++..+++|+....+.. ....+.++||||+....... .......+..+..|
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 69999999999999999999987 568999999998766532 34578999999997544321 11223345667899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++++|++... ......+.+.+.....+ |+||+|+.+.. .......+.. ......+.+
T Consensus 82 d~i~~~~~~~~~~-----------~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~-----~~~~~~~~~~-~~~~~~i~i 144 (171)
T d1mkya1 82 DLVLFVVDGKRGI-----------TKEDESLADFLRKSTVDTILVANKAENLREF-----EREVKPELYS-LGFGEPIPV 144 (171)
T ss_dssp SEEEEEEETTTCC-----------CHHHHHHHHHHHHHTCCEEEEEESCCSHHHH-----HHHTHHHHGG-GSSCSCEEC
T ss_pred cEEEEeecccccc-----------cccccccccccccccccccccchhhhhhhhh-----hhHHHHHHHh-cCCCCeEEE
Confidence 9999999764210 00111222334444444 89999997321 1111222222 344566999
Q ss_pred EccCCCCHHHHHHHHHhhcc
Q psy17315 250 VGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~ 269 (561)
|+++|.|++.|+++|.+..+
T Consensus 145 SAk~g~gid~L~~~i~~~l~ 164 (171)
T d1mkya1 145 SAEHNINLDTMLETIIKKLE 164 (171)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHhCC
Confidence 99999999999999988653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=7.1e-16 Score=144.02 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=95.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccc------ccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQ------GLGNAFLSH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~------~~~~~~l~~ 168 (561)
++|+++|.||||||||+|+|+|.. +.++..+++|..... ......+.++|++|+........ .+...+...
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF-YIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT 102 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE-EEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccc-ccccccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence 489999999999999999999876 578888999987655 34455688999999865433211 112234556
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+..+|++++|+|++..- . ..-..+.+.+.....+ |.||+|+.+..... .....+...+.......
T Consensus 103 ~~~~~~vi~viD~~~~~-------~----~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~ 170 (195)
T d1svia_ 103 REELKAVVQIVDLRHAP-------S----NDDVQMYEFLKYYGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp CTTEEEEEEEEETTSCC-------C----HHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSE
T ss_pred ccchhhhhhhhhccccc-------c----ccccccccccccccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCC
Confidence 67789999999875210 0 0111122233344343 89999986332111 01122333444456677
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+||.+|.|++.|+++|.+.
T Consensus 171 ~~~~SA~~~~gi~el~~~i~~~ 192 (195)
T d1svia_ 171 LILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999998765
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.50 E-value=5.6e-15 Score=136.20 Aligned_cols=155 Identities=21% Similarity=0.159 Sum_probs=89.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCC------CcccccCccc--cccCCeEEEEeCCCcccCCccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENF------PFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFL 166 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~------~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l 166 (561)
.++|+++|+||+|||||+|+|++.. ....+. .|.|...... ......+.++||||... +.....
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~ 77 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVV 77 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHH
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccc-------cccchh
Confidence 3679999999999999999999755 222222 2333222111 12334678899998642 222334
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh---
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--- 240 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--- 240 (561)
..+..+|++++|+|+.... ..+-..+...+.....+ |.||+|+.+...... .....+++...
T Consensus 78 ~~l~~~d~~ilv~d~~~g~-----------~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~-~~~~~~~~~~~~~~ 145 (179)
T d1wb1a4 78 SAADIIDLALIVVDAKEGP-----------KTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKR-TEMIMKSILQSTHN 145 (179)
T ss_dssp HHTTSCCEEEEEEETTTCS-----------CHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHH-HHHHHHHHHHHSSS
T ss_pred hhhhhcccccccccccccc-----------chhhhhhhhhhhhcCCcceeccccccccCHHHHHH-HHHHHHHHHHHhhc
Confidence 5567889999999876311 01111122233444444 899999974321110 11112333322
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
....+.+++||++|.|++.|++.|.+...
T Consensus 146 ~~~~~iv~iSA~~g~gi~eL~~~I~~~l~ 174 (179)
T d1wb1a4 146 LKNSSIIPISAKTGFGVDELKNLIITTLN 174 (179)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEccCCcCHHHHHHHHHhcCC
Confidence 23347799999999999999999987653
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.49 E-value=2.3e-14 Score=129.70 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=91.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
.+||+++|.||||||||+|+|++.. ..+.+..|...... ......+.++||||..... ......++.+|+
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~~ 72 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL--EHRGFKLNIWDVGGQKSLR-------SYWRNYFESTDG 72 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEE--EETTEEEEEEEECCSHHHH-------TTGGGGCTTCSE
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeec--cccccceeeeecCcchhhh-------hHHHhhhhhhhc
Confidence 4789999999999999999999876 33333333222111 1234579999999964322 122345688999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHh--hh--cCCC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLL--GR--VGTN 244 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~--~~--~~~~ 244 (561)
+++|+|.+... ...+....+...+..... + ++||+|+.+.... ....... .. ....
T Consensus 73 ~i~v~d~~d~~---------~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~ 138 (165)
T d1ksha_ 73 LIWVVDSADRQ---------RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC-----NAIQEALELDSIRSHHW 138 (165)
T ss_dssp EEEEEETTCGG---------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-----HHHHHHTTGGGCCSSCE
T ss_pred ceeeeecccch---------hHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH-----HHHHHHHHhhhhhcCCC
Confidence 99999876322 111222222222221111 1 7999998743322 2222221 11 1234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+||++|.|+..++++|.+.
T Consensus 139 ~~~~~Sa~~g~gv~e~~~~l~~~ 161 (165)
T d1ksha_ 139 RIQGCSAVTGEDLLPGIDWLLDD 161 (165)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999876
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.48 E-value=7.1e-14 Score=133.74 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=89.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--------------------cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--------------------NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--------------------~~~~~~i~l~DtpG~~~~~~ 156 (561)
+.|+|+|.||+|||||+|+|++.........++|.+.... .....++.++||||....
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f-- 83 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF-- 83 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC--
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc--
Confidence 4499999999999999999987642222223333221110 123457999999996432
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCc----
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKT---- 229 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~---- 229 (561)
.......+..||++++|+|+... +...-..+-..+.....+ ++||+|+.........
T Consensus 84 -----~~~~~~~~~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~ 147 (227)
T d1g7sa4 84 -----TTLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (227)
T ss_dssp -----TTSBCSSSBSCSEEEEEEETTTC-----------CCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred -----cccchhcccccceEEEEEecccC-----------cccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHH
Confidence 22334567889999999987521 001111222334444444 8999999865433210
Q ss_pred ------cH---H-HHHH-------Hhhh-------------cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 230 ------DE---G-EKKM-------LLGR-------------VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 230 ------~~---~-~l~~-------l~~~-------------~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.. . .... +... ....+.+++||.+|.|++.|+..|.+.
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l 215 (227)
T d1g7sa4 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (227)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 00 0 0001 1000 012357899999999999999988654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.48 E-value=1.4e-14 Score=132.56 Aligned_cols=151 Identities=18% Similarity=0.123 Sum_probs=94.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+.+||+++|.||||||||+|+|.+.. ..+.+..|++.... ......+.++|+||..... ..+...++.+
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i--~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~ 84 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV--QSQGFKLNVWDIGGQRKIR-------PYWRSYFENT 84 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEE--EETTEEEEEEECSSCGGGH-------HHHHHHHTTC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEe--ccCCeeEeEeeccccccch-------hHHHHHhhcc
Confidence 456899999999999999999998876 44444555554322 2234578999999875322 2234557889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhh----hcC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLG----RVG 242 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~----~~~ 242 (561)
|++++|+|.+..... .+....+.+...... .+ ++||+|+.... ....+..... ...
T Consensus 85 ~~ii~v~d~~d~~s~---------~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~ 150 (176)
T d1fzqa_ 85 DILIYVIDSADRKRF---------EETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-----PASEIAEGLNLHTIRDR 150 (176)
T ss_dssp SEEEEEEETTCGGGH---------HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCSS
T ss_pred ceeEEeeccccccch---------hhhhhhhhhhhhhhccCCCeEEEEEEeccccccc-----cHHHHHHHHHHHHHHhc
Confidence 999999987632211 111111111111111 11 78999997432 2222222221 112
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.+|+++|.|+.+++++|.+.
T Consensus 151 ~~~~~~~SA~tg~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 151 VWQIQSCSALTGEGVQDGMNWVCKN 175 (176)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHhc
Confidence 3356789999999999999999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.2e-13 Score=125.83 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=94.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||+|+|++........|..+.+.... .. ....+.+|||||..... ...-..++++
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~-------~~~~~~~~~~ 78 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-------SITQSYYRSA 78 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHGGGSTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHHhcc
Confidence 6899999999999999999998764444444444332221 11 12357899999953221 1122346899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.. ..+..+......+...... |+||+|..+...........+.... ..+.
T Consensus 79 ~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~----~~~~ 144 (171)
T d2ew1a1 79 NALILTYDITCE----------ESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ----DMYY 144 (171)
T ss_dssp SEEEEEEETTCH----------HHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH----TCCE
T ss_pred ceEEEeeecccc----------hhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhC----CCEE
Confidence 999999986532 2223333333333332221 8899998865544332222232222 2357
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.++..++.+.
T Consensus 145 ~~~SAktg~gV~e~f~~l~~~l 166 (171)
T d2ew1a1 145 LETSAKESDNVEKLFLDLACRL 166 (171)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCCHHHHHHHHHHHH
Confidence 8999999999999999888764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=9.2e-14 Score=125.72 Aligned_cols=152 Identities=16% Similarity=0.081 Sum_probs=94.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.||||||||+|+|++..... .+..+.+........ ....+.++||||...... + ....+++
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~~~~~~ 74 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA----I---TKAYYRG 74 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC----C---CHHHHTT
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhh----h---hhhhhcc
Confidence 3789999999999999999999765222 222222222111111 223689999999764332 1 2234689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+|++++|+|.+..+ .++.+..+.+++...... |+||+|+.+...... .+...+..... .+.
T Consensus 75 ~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~---~~~~~~~~~~~-~~~ 140 (164)
T d1z2aa1 75 AQACVLVFSTTDRE----------SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKN---EEAEGLAKRLK-LRF 140 (164)
T ss_dssp CCEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCH---HHHHHHHHHHT-CEE
T ss_pred CceEEEEEeccchh----------hhhhcccccccccccCCCceEEEeeccCCcccceeeee---hhhHHHHHHcC-CEE
Confidence 99999999876322 233444333333332222 889999986544332 22233322222 257
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.+|+.|+++.
T Consensus 141 ~e~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 141 YRTSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEeccCCCcCHHHHHHHHHHHH
Confidence 8899999999999999998874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3.6e-14 Score=129.85 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=99.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc--cccccccccccccC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG--QGLGNAFLSHISAC 172 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~i~~~ 172 (561)
.|+++|.||||||||||+|++.+ ..++..+++|+....+. .....+.++|+||........ .............+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV 86 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence 58999999999999999999988 45555566665544332 233467788999986433211 11112223334667
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|+++++.|+.. .......+...+.+.... +.||+|...... ......+.+.........+.+
T Consensus 87 ~~~l~~~d~~~------------~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~---~~~~~~~~~~~~~~~~~~~~v 151 (179)
T d1egaa1 87 ELVIFVVEGTR------------WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKA---DLLPHLQFLASQMNFLDIVPI 151 (179)
T ss_dssp EEEEEEEETTC------------CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHH---HHHHHHHHHHTTSCCSEEEEC
T ss_pred ceeEEEEecCc------------cchhHHHHHHHhhhccCceeeeeeeeeccchhh---hhhhHhhhhhhhcCCCCEEEE
Confidence 88888887542 111112222233332222 889988874311 112234445555666788999
Q ss_pred EccCCCCHHHHHHHHHhhccCC
Q psy17315 250 VGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~~~ 271 (561)
|+++|.|++.|+++|.+..++.
T Consensus 152 SA~~g~gi~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 152 SAETGLNVDTIAAIVRKHLPEA 173 (179)
T ss_dssp CTTTTTTHHHHHHHHHTTCCBC
T ss_pred eCcCCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999886543
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.45 E-value=1.1e-13 Score=126.46 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=92.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+.++|+++|.||||||||+|+|++.. ....+..+.+.... ......+.++||||..... ..+...++.+
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~ 80 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV--TYKNVKFNVWDVGGQDKIR-------PLWRHYYTGT 80 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEE--EETTEEEEEEEESCCGGGH-------HHHGGGTTTC
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEe--eccceeeEEecCCCcchhh-------hHHHhhhccc
Confidence 346899999999999999999998765 22222222222111 1234578999999975433 2234567899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhh--hc--C
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLG--RV--G 242 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~--~~--~ 242 (561)
|++++|+|++..+ ...+-...+...+..... + ++||+|+.+... ...+....+ .. .
T Consensus 81 ~~ii~v~D~s~~~---------~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~-----~~~i~~~~~~~~~~~~ 146 (173)
T d1e0sa_ 81 QGLIFVVDCADRD---------RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQEKLGLTRIRDR 146 (173)
T ss_dssp CEEEEEEETTCGG---------GHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC-----HHHHHHHTTGGGCCSS
T ss_pred ceEEEEEecccch---------hHHHHHHHHHHHhhhcccccceeeeeeeccccccccc-----HHHHHHHHHHHHHHhC
Confidence 9999999876322 111111122222221111 1 899999974322 222222221 11 2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.+||++|.|+++++++|.+.
T Consensus 147 ~~~~~e~SA~tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 147 NWYVQPSCATSGDGLYEGLTWLTSN 171 (173)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCcCHHHHHHHHHHh
Confidence 3356789999999999999999875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.43 E-value=2e-13 Score=125.53 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=90.4
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+.+||+++|.||||||||+++|.+.. ....+..+.+.... ......+.++||||...... .....++.
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 84 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL--SYKNLKLNVWDLGGQTSIRP-------YWRCYYAD 84 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEE--EETTEEEEEEEEC----CCT-------TGGGTTTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEE--eeCCEEEEEEecccccccch-------hHHhhhcc
Confidence 3456899999999999999999998776 33333333332211 22345789999999854332 22344678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
+|++++|+|.+... ...+....+...+..... + ++||+|+.+... ...+...... .
T Consensus 85 ~~~ii~v~d~~d~~---------s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~-----~~~i~~~~~~~~~~~ 150 (182)
T d1moza_ 85 TAAVIFVVDSTDKD---------RMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS-----ASEVSKELNLVELKD 150 (182)
T ss_dssp EEEEEEEEETTCTT---------THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC-----HHHHHHHTTTTTCCS
T ss_pred ceeEEEEeeecccc---------cchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC-----HHHHHHHHHHHHHhh
Confidence 99999999876322 111111222222211111 1 789999974322 2223222211 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+||++|.|++.++++|.+.
T Consensus 151 ~~~~~~e~SA~~g~gv~e~~~~l~~~ 176 (182)
T d1moza_ 151 RSWSIVASSAIKGEGITEGLDWLIDV 176 (182)
T ss_dssp SCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 23456899999999999999999875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=2.4e-13 Score=123.58 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=93.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||+|+|++... ...+.++.+........ ....+.+|||||..... .+ .-..++.|
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~----~~---~~~~~~~a 78 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYR----TI---TTAYYRGA 78 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH----HH---HHTTTTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhH----HH---HHHHHhcC
Confidence 6899999999999999999987662 23334444433222111 22368899999964221 11 12246899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .+..+..+...+...... ++||+|..+...........+..-. ..+.
T Consensus 79 d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~----~~~~ 144 (169)
T d3raba_ 79 MGFILMYDITNEE----------SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL----GFEF 144 (169)
T ss_dssp CEEEEEEETTCHH----------HHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEE
T ss_pred CEEEEEEECccch----------hhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHc----CCEE
Confidence 9999999876322 222232222222222211 7899998866544322222222222 2357
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|+..+++++.+..
T Consensus 145 ~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 145 FEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCcCHHHHHHHHHHHH
Confidence 8999999999999999998764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=9e-13 Score=120.12 Aligned_cols=153 Identities=16% Similarity=0.118 Sum_probs=90.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.||||||||+|++++.... ..+.++.+....... .....+.++||||...... .....++.
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~ 75 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-------LGVAFYRG 75 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhh-------HHHHHhhc
Confidence 58999999999999999999976622 222233322211111 1123578999999643321 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-------h---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-------S---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
+|++++|+|.+... .++.+..+.+++..... + ++||+|+.+...... ......+....
T Consensus 76 ~~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~--~~~~~~~~~~~ 143 (175)
T d1ky3a_ 76 ADCCVLVYDVTNAS----------SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVS--EKSAQELAKSL 143 (175)
T ss_dssp CCEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSC--HHHHHHHHHHT
T ss_pred cceEEEEeeccccc----------ccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchh--HHHHHHHHHHc
Confidence 99999999876322 23344444444433211 1 899999875433222 23333444444
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+.+|+++|.|++.++.+|.+..
T Consensus 144 ~~~~~~e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 144 GDIPLFLTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp TSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 555678999999999999999998753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.9e-13 Score=122.19 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=93.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+|++.+........|+.+...... .. ....+.++||||...... .....++.+
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~-------~~~~~~~~~ 77 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR-------ITSAYYRGA 77 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC-------CCHHHHTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHH-------HHHHHhhcc
Confidence 6899999999999999999988763333333333222111 11 223688999999643221 233456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.+ ..+..+..+...+...... |+||+|+.+............ ........
T Consensus 78 ~~~i~v~d~~~~----------~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~ 143 (175)
T d2f9la1 78 VGALLVYDIAKH----------LTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNLSF 143 (175)
T ss_dssp SEEEEEEETTCH----------HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEE
T ss_pred CeEEEEEECCCc----------ccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHh----hcccCceE
Confidence 999999987632 2333333333334433322 789999986543322111111 11233467
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.++..+.+..
T Consensus 144 ~e~Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 144 IETSALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHHHHHHH
Confidence 8999999999999999988763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=1.1e-12 Score=122.07 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=96.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||+|+|++.. ....+..+++...... ......+.+|||||...... + +...+++|
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~----~---~~~~~~~a 79 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT----I---TSSYYRGS 79 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC----C---CGGGGTTC
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHH----H---HHHHhccC
Confidence 689999999999999999998765 2333444444332221 11234688999999754321 2 23356899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .+.....+...+...... |+||+|..+...... ........ ......
T Consensus 80 ~~~i~v~d~t~~~----------s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~---~~~~~~~~-~~~~~~ 145 (194)
T d2bcgy1 80 HGIIIVYDVTDQE----------SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY---DVAKEFAD-ANKMPF 145 (194)
T ss_dssp SEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH---HHHHHHHH-HTTCCE
T ss_pred CEEEEEEeCcchh----------hhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhH---HHHhhhhh-ccCcce
Confidence 9999999876322 222233232333322222 899999986554432 22222222 223457
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+++|.|+..+++.+.+...
T Consensus 146 ~e~SAk~g~gi~e~f~~l~~~i~ 168 (194)
T d2bcgy1 146 LETSALDSTNVEDAFLTMARQIK 168 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecCcCccHHHHHHHHHHHHH
Confidence 88999999999999999988743
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=7e-13 Score=119.60 Aligned_cols=152 Identities=17% Similarity=0.086 Sum_probs=94.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCc--cccc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN--ENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~--~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.||+++|.+|||||||+|++++........|..+.... .... ....+.++||||...... .....++.+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~ 73 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS-------LIPSYIRDS 73 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGG-------GHHHHHTTC
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhcc-------chHHHhhcc
Confidence 47999999999999999999977633222233322211 1111 123678999999753321 223456899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .++++..+..+....... |+||+|+.+...........+..-. ....
T Consensus 74 ~~~ilv~d~~~~~----------s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~----~~~~ 139 (164)
T d1yzqa1 74 AAAVVVYDITNVN----------SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL----NVMF 139 (164)
T ss_dssp SEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHT----TCEE
T ss_pred ceEEEeecccccc----------chhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHc----CCEE
Confidence 9999999875322 233343333333322211 8899999765444321221222211 2356
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+++|.|+++++.+|++..+
T Consensus 140 ~e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 140 IETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp EECCTTTCTTHHHHHHHHHHHSC
T ss_pred EEecCCCCcCHHHHHHHHHHhhC
Confidence 88999999999999999998753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.2e-13 Score=120.39 Aligned_cols=151 Identities=19% Similarity=0.130 Sum_probs=93.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+|++.+........|..+.+.... .. ....+.++||||...... + ....++.+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----~---~~~~~~~~ 77 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA----V---TRSYYRGA 77 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH----H---HHHHHHTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHH----H---HHHHhcCC
Confidence 6899999999999999999997763322223333222111 11 223688999999643221 1 12346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.. ..++.+..+...+...... ++||+|+.+...... .+...+.... ..+.
T Consensus 78 d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~---~~~~~~~~~~-~~~~ 143 (166)
T d1z0fa1 78 AGALMVYDITRR----------STYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTY---EEAKQFAEEN-GLLF 143 (166)
T ss_dssp SEEEEEEETTCH----------HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---HHHHHHHHHT-TCEE
T ss_pred cEEEEEeccCch----------HHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHH---HHHHHHHHHc-CCEE
Confidence 999999987532 2233333333333332222 799999875544322 2222222222 2367
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|+++++..+.+..
T Consensus 144 ~e~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 144 LEASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5e-13 Score=121.35 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=86.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
.||+++|.+|||||||+|++.+... ...+..+.+...... ......+.++||||..... .+ ....++.+|+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~----~~---~~~~~~~~d~ 74 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR----WL---PGHCMAMGDA 74 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-----------C---HHHHHTSCSE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccc----ee---cccchhhhhh
Confidence 4899999999999999999998762 222222222111100 1123468899999974322 11 1234689999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
+++|+|.+.+ ..++.+..+..++..... + |+||+|+.+...........+....+ ...+
T Consensus 75 ~ilv~d~t~~----------~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~----~~~~ 140 (168)
T d2gjsa1 75 YVIVYSVTDK----------GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD----CKFI 140 (168)
T ss_dssp EEEEEETTCH----------HHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT----SEEE
T ss_pred hceecccccc----------ccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcC----CEEE
Confidence 9999987632 234444444444433321 1 88999998654433222222222222 2568
Q ss_pred EEEccCCCCHHHHHHHHHhh
Q psy17315 248 GIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~ 267 (561)
.+|+++|.|+..++..|+++
T Consensus 141 e~Sak~~~~v~~~f~~l~~~ 160 (168)
T d2gjsa1 141 ETSAALHHNVQALFEGVVRQ 160 (168)
T ss_dssp ECBTTTTBSHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHHH
Confidence 89999999999999999875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.2e-12 Score=118.65 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=91.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCC--cccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFP--FCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~--~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||++++.+........| +......... .....+.++||+|...... + ....++.+
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~---~~~~~~~~ 76 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA----L---GPIYYRDS 76 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecc----c---chhhccCC
Confidence 6899999999999999999987663222222 2111111111 1224688999999764332 1 23346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.++ .++++....+.+...... ++||+|+.+...... .+...+..... -+.
T Consensus 77 ~~~i~v~d~~~~~----------Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~---~e~~~~a~~~~-~~~ 142 (167)
T d1z08a1 77 NGAILVYDITDED----------SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI---QEAESYAESVG-AKH 142 (167)
T ss_dssp SEEEEEEETTCHH----------HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCH---HHHHHHHHHTT-CEE
T ss_pred ceeEEEEeCCchh----------HHHhhhhhhhhcccccccccceeeeccccccccccccch---HHHHHHHHHcC-CeE
Confidence 9999999876322 223333222222221111 789999987654432 22333333222 356
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+++|.|++.++..|+++.+
T Consensus 143 ~e~Sak~~~~v~e~F~~l~~~i~ 165 (167)
T d1z08a1 143 YHTSAKQNKGIEELFLDLCKRMI 165 (167)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHHHHHHHh
Confidence 89999999999999999998754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=2e-12 Score=118.93 Aligned_cols=150 Identities=12% Similarity=0.066 Sum_probs=93.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+|+|++.... ..+..+.+........ ....+.++||||...... .....+..+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~ 75 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-------LGVAFYRGA 75 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-------SCCGGGTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccc-------cccccccCc
Confidence 58999999999999999999976622 2233333332222111 223688999999754332 123346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-------h---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-------S---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
|++++|+|.+.. ..+..+..+.+++..... + |+||+|+.++.. .............
T Consensus 76 ~~~i~~~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~ 141 (184)
T d1vg8a_ 76 DCCVLVFDVTAP----------NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV----ATKRAQAWCYSKN 141 (184)
T ss_dssp SEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS----CHHHHHHHHHHTT
T ss_pred cEEEEeecccch----------hhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccch----hHHHHHHHHHHhc
Confidence 999999987531 223333333333322211 1 889999865332 2222333333333
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+.+|+++|.|+..++.++.+.
T Consensus 142 ~~~~~e~Sak~~~gI~e~f~~l~~~ 166 (184)
T d1vg8a_ 142 NIPYFETSAKEAINVEQAFQTIARN 166 (184)
T ss_dssp SCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCcCHHHHHHHHHHH
Confidence 4567889999999999999998875
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-12 Score=119.51 Aligned_cols=151 Identities=12% Similarity=0.057 Sum_probs=93.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+|++++.... ..+..+.+...... ......+.++||||...... .....++.+
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 78 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS-------VTRSYYRGA 78 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH-------HHHTTSTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhh-------hHHHHhhhC
Confidence 68999999999999999999876632 22223333222111 11234688999999643221 123446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.. ..+..+..+...+...... ++||+|........... ...+... ...+.
T Consensus 79 ~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~---~~~~~~~-~~~~~ 144 (174)
T d2bmea1 79 AGALLVYDITSR----------ETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLE---ASRFAQE-NELMF 144 (174)
T ss_dssp SEEEEEEETTCH----------HHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH---HHHHHHH-TTCEE
T ss_pred CEEEEEEecccc----------hhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhH---HHHHHHh-CCCEE
Confidence 999999987532 2333444333333333222 89999987554433222 2222211 22356
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.++.++.+..
T Consensus 145 ~e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 145 LETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeeCCCCcCHHHHHHHHHHHH
Confidence 8899999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=1e-12 Score=118.97 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=94.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.+|||||||+|+|.+..... .+..+.+....... .....+.++||+|...... +. ...++.
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~~---~~~~~~ 76 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA----LA---PMYYRG 76 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG----GT---HHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhH----HH---HHHHhh
Confidence 3689999999999999999999776322 22222222211111 1123577999999764332 21 234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.+ ..++.+..+...+...... |+||+|+.+...... .+...+.... ...
T Consensus 77 ~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~---~~~~~~~~~~-~~~ 142 (167)
T d1z0ja1 77 SAAAIIVYDITKE----------ETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME---RDAKDYADSI-HAI 142 (167)
T ss_dssp CSEEEEEEETTCH----------HHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH---HHHHHHHHHT-TCE
T ss_pred ccceEEEeeechh----------hhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhH---HHHHHHHHHc-CCE
Confidence 9999999987532 2334444333333332222 899999976544332 2222222222 235
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|++.++..|+++.
T Consensus 143 ~~e~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 143 FVETSAKNAININELFIEISRRI 165 (167)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999874
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=8.4e-13 Score=120.15 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=92.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||+|++++........|....+.... ......+.++||||...... + ....++.+
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----~---~~~~~~~~ 76 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG----L---RDGYYIQA 76 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSS----C---GGGGTTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccce----e---cchhcccc
Confidence 5899999999999999999987652222112111111111 11234689999999754332 1 22346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|.+.++ .++.+..+...+...... |+||+|+.+....... . .. ........+
T Consensus 77 ~~~ilv~d~~~~~----------Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~-~---~~--~~~~~~~~~ 140 (170)
T d1i2ma_ 77 QCAIIMFDVTSRV----------TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-I---VF--HRKKNLQYY 140 (170)
T ss_dssp CEEEEEEETTSGG----------GGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTS-H---HH--HSSCSSEEE
T ss_pred cchhhcccccccc----------ccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHH-H---HH--HHHcCCEEE
Confidence 9999999887433 233333333333222222 9999999765432211 1 11 111233568
Q ss_pred EEEccCCCCHHHHHHHHHhhccCCCc
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~~~~~~ 273 (561)
.+|+++|.|++.++.+|.+..+...+
T Consensus 141 e~Sak~~~~v~e~f~~l~~~l~~~~~ 166 (170)
T d1i2ma_ 141 DISAKSNYNFEKPFLWLARKLIGDPN 166 (170)
T ss_dssp EEBTTTTBTTTHHHHHHHHHHHTCTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHccCCC
Confidence 89999999999999999988655443
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.6e-12 Score=118.53 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=92.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||++||.||||||||+|++.+........|..+...... ......+.++|++|...... .....++.+
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~ 76 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-------ITRSYYRGA 76 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-------CCHHHHTTC
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhh-------HHHHHhhcc
Confidence 6899999999999999999997764333333333322221 11224689999999754332 223345889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.++ .++.+..+...+...... |+||+|.......... ....+.... ..+.
T Consensus 77 d~~ilv~d~~~~~----------sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~---~~~~~a~~~-~~~~ 142 (173)
T d2a5ja1 77 AGALLVYDITRRE----------TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKRE---EGEAFAREH-GLIF 142 (173)
T ss_dssp SEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH---HHHHHHHHH-TCEE
T ss_pred CEEEEEEeecChH----------HHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHH---HHHHHHHHc-CCEE
Confidence 9999999875322 233333333333333222 8899998765444322 222222221 2357
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..++..+.+.
T Consensus 143 ~e~Sa~tg~~V~e~f~~i~~~ 163 (173)
T d2a5ja1 143 METSAKTACNVEEAFINTAKE 163 (173)
T ss_dssp EEECTTTCTTHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHH
Confidence 899999999999999998875
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=2.8e-12 Score=116.37 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=97.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.+|||||||++++.+.. ....+.+|........ ......+.++||+|...... + ....++.
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~----~---~~~~~~~ 75 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS----L---APMYYRN 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG----G---HHHHHTT
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHH----H---HHHHHhc
Confidence 3789999999999999999999776 2223334432211111 11234689999999753321 1 1234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.++ .++++..+..+....... ++||+|+.+..........+...+..... .+
T Consensus 76 ~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~-~~ 144 (170)
T d1ek0a_ 76 AQAALVVYDVTKPQ----------SFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG-LL 144 (170)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CE
T ss_pred cceEEEEEeCCccc----------chhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcC-CE
Confidence 99999999876322 233343333333222221 89999997664443323333333333322 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+.++|+.|.++.
T Consensus 145 ~~e~Sak~g~gV~e~F~~i~~~i 167 (170)
T d1ek0a_ 145 FFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEecCCCCcCHHHHHHHHHHHh
Confidence 78999999999999999998874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.35 E-value=7.5e-13 Score=118.01 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=87.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
+||+++|.||||||||+|+|++.+.... .+..+............+.++|+||..... .......+.+++++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~~~i 72 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGLI 72 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-CCCSSCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHTTTCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc-ccceeeEEEEEeeeeEEEEEecCCCcccch-------hhhhhhhccceeEE
Confidence 5899999999999999999997662211 111111111112344579999999975432 22344568889999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHH-hcc---h---hhccccccCcCCCCCccHHHHHHHh--h--hcCCCc
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LRR---S---VDAKADSKKKMGPKKTDEGEKKMLL--G--RVGTNL 245 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~--~--~~~~~~ 245 (561)
+++|...+. .+........++.. ... + ++||+|....... .++.... . ......
T Consensus 73 ~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~-----~~i~~~~~~~~~~~~~~~ 137 (160)
T d1r8sa_ 73 FVVDSNDRE----------RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA-----AEITDKLGLHSLRHRNWY 137 (160)
T ss_dssp EEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-----HHHHHHTTGGGCSSCCEE
T ss_pred EEEEecChH----------HHHHHHHHHHHHHHhhcccCceEEEEeecccccccccH-----HHHHHHHHHHHHhhCCCE
Confidence 999875322 11111111111111 111 1 8899988743221 2222111 1 113345
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+||++|.|+.+++++|.++
T Consensus 138 ~~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 138 IQATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp EEECBTTTTBTHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHhc
Confidence 7889999999999999999875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.35 E-value=1.6e-12 Score=117.30 Aligned_cols=148 Identities=17% Similarity=0.143 Sum_probs=89.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
+||+++|.+|||||||+|+|++........| |...... ......+.++||||..... ..+...+..+|+
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~--T~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ 73 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPRFR-------SMWERYCRGVSA 73 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEETTEEEEEEEECCSHHHH-------TTHHHHHTTCSE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCcccc--cceeeeeeeeeeeEEEEEeecccccccc-------ccccccccccch
Confidence 6899999999999999999988763322222 2222111 1234468899999964322 122334688999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhh----cCCC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTN 244 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~ 244 (561)
+++|+|.+..+. ..+....+...+.... .+ ++||+|+.+... ...+....+. ....
T Consensus 74 ~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~-----~~~i~~~~~~~~~~~~~~ 139 (164)
T d1zd9a1 74 IVYMVDAADQEK---------IEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-----EKELIEKMNLSAIQDREI 139 (164)
T ss_dssp EEEEEETTCGGG---------HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-----HHHHHHHTTGGGCCSSCE
T ss_pred hhcccccccccc---------cchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh-----HHHHHHHHHHHHHHhCCC
Confidence 999998763221 1111112222222111 11 789999864322 2222222221 1234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+++|.|+..++++|.+.
T Consensus 140 ~~~e~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 140 CCYSISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHT
T ss_pred EEEEEeCcCCcCHHHHHHHHHHc
Confidence 56899999999999999999875
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.6e-12 Score=118.02 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=95.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.+|||||||+++|++... ...+..+.+...... ......+.++||||...... + ....+++
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~---~~~~~~~ 78 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS----L---APMYYRG 78 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG----G---HHHHHTT
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhh----h---HHHHhhC
Confidence 46899999999999999999997662 223333333221111 11234688999999753321 1 1234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+..+ .+.++..+...+...... |+||+|+.+...........+.. . ...+
T Consensus 79 ~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~---~-~~~~ 144 (170)
T d1r2qa_ 79 AQAAIVVYDITNEE----------SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD---D-NSLL 144 (170)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH---H-TTCE
T ss_pred cceEEEEeccchhh----------HHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHH---h-cCCE
Confidence 99999999865322 233333333333332222 89999998665543322222222 2 2236
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+||++|.|+.+++..|+++..
T Consensus 145 ~~e~SAk~g~~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 145 FMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTSC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999998753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=7e-13 Score=120.94 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=70.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+++|++........|..+.+.... .. ....+.++||||...... +. -..++.+
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~----~~---~~~~~~~ 79 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----IT---TAYYRGA 79 (173)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------C---CTTTTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHH----HH---HHhccCC
Confidence 6899999999999999999997653222222222221111 11 223578899999653332 11 2336889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.++ .+..+..+...+...... |+||+|.......... ........ .....
T Consensus 80 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~---~~~~~~~~-~~~~~ 145 (173)
T d2fu5c1 80 MGIMLVYDITNEK----------SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE---RGEKLALD-YGIKF 145 (173)
T ss_dssp SEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHH---HHHHHHHH-HTCEE
T ss_pred CEEEEEEECCChh----------hHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHH---HHHHHHHh-cCCEE
Confidence 9999999876322 233344333444332222 8999998865444321 11111111 12356
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+.+++.+|.+.
T Consensus 146 ~e~Sa~~g~gv~e~f~~l~~~ 166 (173)
T d2fu5c1 146 METSAKANINVENAFFTLARD 166 (173)
T ss_dssp EECCC---CCHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 889999999999999999875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3e-12 Score=116.64 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=92.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+||+++|.+|||||||++++++.... ..++.++.+.... .. ....+.++||+|...... .....++
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~ 76 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-------MREQYMR 76 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-------CHHHHHH
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCCCC-cccccccccceeeEeccCCeeeeeecccccccccccc-------ccchhhc
Confidence 3479999999999999999999876522 1222222222111 11 123688999999864332 1233458
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-cc---h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+.. ..++.+..+...+... .. + |+||+|+........ .....+.... .
T Consensus 77 ~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~---~~~~~~~~~~-~ 142 (173)
T d2fn4a1 77 AGHGFLLVFAINDR----------QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR---SEASAFGASH-H 142 (173)
T ss_dssp HCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH---HHHHHHHHHT-T
T ss_pred cceeeeeecccccc----------cccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccch---hhhhHHHHhc-C
Confidence 89999999987632 2233343333333221 11 1 899999875543322 2222222222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+.+|+++|.|+..+++.+++.
T Consensus 143 ~~~~e~Sak~g~gv~e~f~~l~~~ 166 (173)
T d2fn4a1 143 VAYFEASAKLRLNVDEAFEQLVRA 166 (173)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHH
Confidence 356889999999999999999876
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.7e-12 Score=117.79 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=91.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||+|++++..... .+..+..+.... .. ....+.++||+|...... .....++.+
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~-~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~~a 74 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA-------MQRLSISKG 74 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCS-SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH-------HHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-ccCcceeeccccceeeccccceeccccccccccccc-------cccccccce
Confidence 689999999999999999999765221 121111111110 11 123578899999754332 223446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-----h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|++++|+|.+.++ .+..+..+...+.+... + |+||+|+.+...........+..-.+ .
T Consensus 75 ~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~----~ 140 (171)
T d2erxa1 75 HAFILVYSITSRQ----------SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK----C 140 (171)
T ss_dssp SEEEEEEETTCHH----------HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT----C
T ss_pred eEEEEEeeccccc----------chhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcC----C
Confidence 9999999876322 23334333333332211 1 78999997654443222222322222 2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+++|.|+++++..|.+.
T Consensus 141 ~~~e~Sak~~~~v~e~f~~l~~~ 163 (171)
T d2erxa1 141 AFMETSAKLNHNVKELFQELLNL 163 (171)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHT
T ss_pred eEEEEcCCCCcCHHHHHHHHHHH
Confidence 56889999999999999999875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=3.8e-12 Score=115.01 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=91.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c-c--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N-K--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~-~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+|+|++........|..+.+.... . . ....+.++||||...... + ....++++
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 75 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT----I---TTAYYRGA 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC----C---CHHHHTTE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHhcC
Confidence 5899999999999999999998764333334433333221 1 1 123577899999754331 2 22346899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|....+ .++.+..+.......... +.||.|..++... ..+...+..... .+.
T Consensus 76 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~----~~~~~~~~~~~~-~~~ 140 (166)
T d1g16a_ 76 MGIILVYDITDER----------TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVT----ADQGEALAKELG-IPF 140 (166)
T ss_dssp EEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSC----HHHHHHHHHHHT-CCE
T ss_pred CEEEEEEECCCcc----------CHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhh----HHHHHHHHHhcC-CeE
Confidence 9999999876322 233344333333332222 7788887644332 233333333333 477
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.++.+|.+..
T Consensus 141 ~~~Sa~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 141 IESSAKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998753
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.2e-11 Score=113.79 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=91.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc----ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.+|||||||+++++..... ..+..++.+..... .....+.++||||...... .....+++
T Consensus 9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~-------~~~~~~~~ 80 (185)
T d2atxa1 9 MLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPM 80 (185)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-------TGGGGCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCceeeeeeEEEeeCCceEEeecccccccchhhh-------hhhhcccc
Confidence 368999999999999999999876522 22222222221111 1123588999999743221 22345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcC---------CCCCccHHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKM---------GPKKTDEGEKKML 237 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~---------~~~~~~~~~l~~l 237 (561)
+|++++|+|.+.++.+ .+-.......+...... |+||+|+.+.. ....-...+...+
T Consensus 81 a~~~ilv~d~t~~~Sf---------~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~ 151 (185)
T d2atxa1 81 TDVFLICFSVVNPASF---------QNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 151 (185)
T ss_dssp CSEEEEEEETTCHHHH---------HHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred cceeeeccccchHHHH---------HHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHH
Confidence 9999999988743311 11112222333333222 89999987421 0001112222233
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
-.....-..+.+|+++|.|++++|+.+...
T Consensus 152 a~~~~~~~~~E~SAk~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 152 AKEIGACCYVECSALTQKGLKTVFDEAIIA 181 (185)
T ss_dssp HHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCCEEEEecCCCCcCHHHHHHHHHHH
Confidence 233333456789999999999999998875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=6.5e-12 Score=111.81 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
||+++|.||||||||+|+|++.. ..+.+.++.+.... ........++|++|...... ......+.++.++
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 72 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL--AIGNIKFTTFDLGGHIQARR-------LWKDYFPEVNGIV 72 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEE--CCTTCCEEEEECCCSGGGGG-------GGGGGCTTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEe--ccCCeeEEEEeeccchhhhh-------hHhhhhhheeeee
Confidence 79999999999999999999887 55555555554432 23345688999998754332 2233457789999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHh--cc-h---hhccccccCcCCCCCccHHHHHHHhh-----------
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RR-S---VDAKADSKKKMGPKKTDEGEKKMLLG----------- 239 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~-~---v~NK~D~~~~~~~~~~~~~~l~~l~~----------- 239 (561)
+++|...... .....+.+....... .. . ++||.|+..... ...+.....
T Consensus 73 ~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~-----~~~i~~~~~~~~~~~~~~~~ 138 (166)
T d2qtvb1 73 FLVDAADPER---------FDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS-----EAELRSALGLLNTTGSQRIE 138 (166)
T ss_dssp EEEETTCGGG---------HHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC-----HHHHHHHHTCSSCCC---CC
T ss_pred eeccccchhh---------hhhhhHHHHhhhhhhccCCceEEEEeccccccccCC-----HHHHHHHhhhhhhhHHHhhc
Confidence 9998753221 111111111111101 11 1 789999874321 122211111
Q ss_pred hcCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 240 RVGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 240 ~~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
.......+.+||++|.|+++++++|.+
T Consensus 139 ~~~~~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 139 GQRPVEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp SSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred ccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence 112235688999999999999999975
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.3e-12 Score=115.52 Aligned_cols=151 Identities=16% Similarity=0.100 Sum_probs=91.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
..||+++|.+|||||||+|+|++........|....+.... ......+.++||||...... + ....++.+
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~----~---~~~~~~~~ 76 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----F---PQTYSIDI 76 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----C---CGGGTSSC
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeeccccccccccc----c---cchhhhhh
Confidence 46899999999999999999987652211112111111111 11223678999999864432 1 13446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-hcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .++.+..+...+.. .... |+||+|+........ .+...+..... ..
T Consensus 77 d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~---~~~~~~a~~~~-~~ 142 (167)
T d1xtqa1 77 NGYILVYSVTSIK----------SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY---EEGKALAESWN-AA 142 (167)
T ss_dssp CEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCH---HHHHHHHHHHT-CE
T ss_pred hhhhhhcccchhh----------hhhhhhhhhhhhhhcccccccceeeeccccccccccchhH---HHHHHHHHHcC-CE
Confidence 9999999876322 33344433333322 2221 899999876544332 22222222221 24
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|++.+|+.+...
T Consensus 143 ~~e~Sak~~~~v~~~f~~li~~ 164 (167)
T d1xtqa1 143 FLESSAKENQTAVDVFRRIILE 164 (167)
T ss_dssp EEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 6789999999999999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=5.2e-12 Score=114.61 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=89.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccC-CC--cccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAEN-FP--FCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~-~~--~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.+||+++|.+|||||||++++++....... .+ +.+........ ....+.+|||||...... + .-..++
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----~---~~~~~~ 78 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS----V---THAYYR 78 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHH----H---HHHhhc
Confidence 368999999999999999999876522221 12 22222111111 123688999999743321 1 223468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
++|++++|+|.+..+ .+..+..+...+...... ++||+|..+...... .....+.... ..
T Consensus 79 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~---~~~~~~~~~~-~~ 144 (170)
T d2g6ba1 79 DAHALLLLYDVTNKA----------SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR---EDGEKLAKEY-GL 144 (170)
T ss_dssp GCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH---HHHHHHHHHH-TC
T ss_pred CCceeEEEecCCccc----------chhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccH---HHHHHHHHHc-CC
Confidence 899999999876322 222333332223222221 889999987655433 2222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+++|.|+..++.+|++.
T Consensus 145 ~~~e~Sak~g~gi~e~f~~l~~~ 167 (170)
T d2g6ba1 145 PFMETSAKTGLNVDLAFTAIAKE 167 (170)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCCcCHHHHHHHHHHH
Confidence 67999999999999999999875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1e-11 Score=113.37 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=91.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.||+++|.+|||||||++++++........|......... ......+.++||||...... .....++++|
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~~~~~ 75 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LRPLSYPDTD 75 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-------TGGGGCTTCS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcc-------cchhhcccch
Confidence 5899999999999999999997762221112111000000 11223589999999753332 2234578999
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC---------CCCccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l~~l~ 238 (561)
++++|+|.+.++ .++.+ ..+...+...... |+||+|+..... .......+...+.
T Consensus 76 ~~ilv~d~~~~~----------Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a 145 (177)
T d1kmqa_ 76 VILMCFSIDSPD----------SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 145 (177)
T ss_dssp EEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred hhhhhcccchhH----------HHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHH
Confidence 999999876322 12211 1222233332222 789999974321 0111222223333
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
........+.+|+++|.|+..+|+.+.+..
T Consensus 146 ~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 146 NRIGAFGYMECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 333334568899999999999999998763
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3e-12 Score=117.09 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=93.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.+|||||||+|+|++........+..+...... . .....+.++||||...... +. ...++.
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~---~~~~~~ 79 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT----LT---PSYYRG 79 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC----SH---HHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHH----HH---HHHHhc
Confidence 37899999999999999999998763322222222221111 1 1233689999999754321 22 234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+. ...++.+..+..++...... +.||.|..++.- ...+...+.... ..
T Consensus 80 ~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v----~~~~~~~~~~~~-~~ 144 (177)
T d1x3sa1 80 AQGVILVYDVTR----------RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREV----DRNEGLKFARKH-SM 144 (177)
T ss_dssp CCEEEEEEETTC----------HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCS----CHHHHHHHHHHT-TC
T ss_pred CCEEEEEEECCC----------ccccccchhhhhhhcccccccceeeEEEeeccccccccc----cHHHHHHHHHHC-CC
Confidence 999999998652 12233333333333221111 899999764321 222222322222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+++|.|++.+++++++....
T Consensus 145 ~~~e~Sa~tg~gv~e~f~~l~~~l~~ 170 (177)
T d1x3sa1 145 LFIEASAKTCDGVQCAFEELVEKIIQ 170 (177)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence 57889999999999999999987543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=7e-12 Score=114.17 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=93.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+|++++... ...+.++.+........ ....+.++||+|..... ......+..+
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~ 79 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR-------SLRTPFYRGS 79 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH-------HHHGGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceeh-------hhhhhhhhcc
Confidence 5899999999999999999987652 22222222221111111 12357899999975332 1234456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-------h---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-------S---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
|+++++.|.+.. ..++.+..+.+++..... + |+||+|+.++. ....+...+.....
T Consensus 80 ~~~i~~~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~----v~~~~~~~~~~~~~ 145 (174)
T d1wmsa_ 80 DCCLLTFSVDDS----------QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ----VSTEEAQAWCRDNG 145 (174)
T ss_dssp SEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS----SCHHHHHHHHHHTT
T ss_pred ceEEEEEeeecc----------cccchhhhHHHHHHHHhccccCCCceEEEeccccchhhcc----CcHHHHHHHHHHcC
Confidence 999999986532 223334333333333221 1 89999986532 12333444444444
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.-+.+.+|+++|.|++.++..+++..
T Consensus 146 ~~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 146 DYPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp CCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 45678899999999999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.3e-12 Score=115.54 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=91.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.+|||||||+|++++........| +..+.... . .....+.++|++|...... .....+++
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~-t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~~ 74 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDP-TIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-------MRDLYIKN 74 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT-TCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-------HHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccCC-ceeeeeeeeeecCcceEeeccccCCCcccccc-------chHHHhhc
Confidence 37899999999999999999997652211111 11111110 1 1223688999999643221 22344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+.++ .+..+..+...+..... + |+||+|+.+...........+.... ..
T Consensus 75 a~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~----~~ 140 (167)
T d1kaoa_ 75 GQGFILVYSLVNQQ----------SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW----GC 140 (167)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----TS
T ss_pred ccceeeeeeecchh----------hhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHc----CC
Confidence 99999999876322 23333333333322211 1 8999999865444322222222221 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+++|.|+..++..++++
T Consensus 141 ~~~e~Sak~g~~i~e~f~~i~~~ 163 (167)
T d1kaoa_ 141 PFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcCHHHHHHHHHHH
Confidence 57899999999999999999875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.29 E-value=4.7e-12 Score=114.82 Aligned_cols=151 Identities=16% Similarity=0.069 Sum_probs=88.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcc-ccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNE-NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.||+++|.+|||||||+|++++.... ..+..+....... .......+.++||||...... + ....++++|
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~----~---~~~~~~~~~ 77 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA----I---RDNYFRSGE 77 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH----H---HHHHHHHCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhh----h---hhhcccccc
Confidence 58999999999999999999876522 1222221110000 011223688999999854321 1 123467899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-c---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-R---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.. ..++.+..+.+++.... . + |+||+|+.+...... .+...+..... ...
T Consensus 78 ~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~---~~~~~~~~~~~-~~~ 143 (168)
T d1u8za_ 78 GFLCVFSITEM----------ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV---EEAKNRADQWN-VNY 143 (168)
T ss_dssp EEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCH---HHHHHHHHHHT-CEE
T ss_pred eeEEEeeccch----------hhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccH---HHHHHHHHHcC-CeE
Confidence 99999987532 22333433333333321 1 1 899999875543322 22222222221 246
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.+++.|.++.
T Consensus 144 ~e~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 144 VETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHH
Confidence 8899999999999999998763
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.28 E-value=1.6e-12 Score=120.99 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=89.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCccc-------------------------cccCCeEEEEeC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNEN-------------------------NKVPAFLNVVDI 148 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~-------------------------~~~~~~i~l~Dt 148 (561)
++|+++|.+|+|||||+|+|++.. .......|.|.+.... ......+.++||
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt 85 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 85 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence 579999999999999999999753 2222234444332110 001234889999
Q ss_pred CCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcC
Q psy17315 149 AGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKM 224 (561)
Q Consensus 149 pG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~ 224 (561)
||... +.......+..+|++++|+|+...- ......+.+ ..+..+..+ +.||+|+.+..
T Consensus 86 PGh~~-------f~~~~~~~~~~~d~~ilvvda~~g~------~~~~t~e~~----~~~~~~~~~~iiv~inK~D~~d~~ 148 (195)
T d1kk1a3 86 PGHEA-------LMTTMLAGASLMDGAILVIAANEPC------PRPQTREHL----MALQIIGQKNIIIAQNKIELVDKE 148 (195)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSCS------SCHHHHHHH----HHHHHHTCCCEEEEEECGGGSCHH
T ss_pred chhhh-------hhHHhhcccccccccccccchhhhh------hhhhhHHHH----HHHHHhcCccceeeeecccchhhH
Confidence 99642 2233455567899999999875310 000011111 122223222 79999997432
Q ss_pred CCCCccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 225 GPKKTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 225 ~~~~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.... ....+....... ...+.|++||++|.|++.|++++.+..
T Consensus 149 ~~~~-~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 149 KALE-NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp HHHH-HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHH-HHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 1110 011122222222 234579999999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.4e-12 Score=114.59 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=88.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||+++|.||||||||+|++++.... ..+..+.+...... ......+.++||||...... .....++.+|
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~~ 78 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGA-------MREQYMRTGE 78 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCH-------HHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccc-------cccccccccc
Confidence 68999999999999999999876522 12222211111100 01123688999999764332 1123457899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-cch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.. ..++.+..+..++... ... |+||+|+.+...... .+...+..... .+.
T Consensus 79 ~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~---~~~~~~~~~~~-~~~ 144 (171)
T d2erya1 79 GFLLVFSVTDR----------GSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQ---EEGQQLARQLK-VTY 144 (171)
T ss_dssp EEEEEEETTCH----------HHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCH---HHHHHHHHHTT-CEE
T ss_pred eEEEeeccccc----------cchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchH---HHHHHHHHHcC-CEE
Confidence 99999987632 2334444433333222 111 799999875543332 22233322222 256
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|++.++..|.+.
T Consensus 145 ~e~Sak~~~~i~e~f~~l~~~ 165 (171)
T d2erya1 145 MEASAKIRMNVDQAFHELVRV 165 (171)
T ss_dssp EECBTTTTBSHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHH
Confidence 789999999999999999875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.28 E-value=3.7e-12 Score=115.78 Aligned_cols=150 Identities=14% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+.+||+++|.||||||||+|+|.+.+ ..+.+..+.+.... ...+..+.++|++|...... ........+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~-------~~~~~~~~~ 83 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI--VINNTRFLMWDIGGQESLRS-------SWNTYYTNT 83 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEE--EETTEEEEEEECCC----CG-------GGHHHHTTC
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEE--eecceEEEEecccccccccc-------chhhhhccc
Confidence 455899999999999999999999877 44444444333221 22345789999988643322 233445778
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhh----hc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLG----RV 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~----~~ 241 (561)
+++++|+|.+..+.. .. ........... ..+ ++||+|+..... ......... ..
T Consensus 84 ~~~i~v~d~~d~~~~-------~~---~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----~~~i~~~~~~~~~~~ 148 (177)
T d1zj6a1 84 EFVIVVVDSTDRERI-------SV---TREELYKMLAHEDLRKAGLLIFANKQDVKECMT-----VAEISQFLKLTSIKD 148 (177)
T ss_dssp CEEEEEEETTCTTTH-------HH---HHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC-----HHHHHHHHTGGGCCS
T ss_pred eeeeeecccccccch-------hh---hhhhhhhhhhcccccceEEEEEEEcccccccCc-----HHHHHHHHHHHhhHh
Confidence 999999987632211 10 00001111111 111 889999864322 222222211 11
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+..++++|.+.
T Consensus 149 ~~~~~~~~Sa~tg~Gi~e~~~~L~~~ 174 (177)
T d1zj6a1 149 HQWHIQACCALTGEGLCQGLEWMMSR 174 (177)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 33457889999999999999999875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=8.6e-12 Score=128.91 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=93.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-----CcccCCCcccccCccccc-cCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-----AAAENFPFCTIDPNENNK-VPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-----~~~~~~~~~T~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
..+++|+++|.||||||||+|+|+|.. ..+.+.+++|+++..... ....+.+|||||+.......+..... .
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~--~ 131 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEK--M 131 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHH--T
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHH--h
Confidence 356899999999999999999999854 233455678887655322 23469999999997654332221111 2
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCc----CCCCC-ccHHHHHHHh-
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKK----MGPKK-TDEGEKKMLL- 238 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~----~~~~~-~~~~~l~~l~- 238 (561)
.+..+|+++++.|....+ +.. .+...+....++ |.||+|.... ..... .....++.+.
T Consensus 132 ~~~~~d~~l~~~~~~~~~------------~d~-~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~ 198 (400)
T d1tq4a_ 132 KFYEYDFFIIISATRFKK------------NDI-DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 198 (400)
T ss_dssp TGGGCSEEEEEESSCCCH------------HHH-HHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred hhhcceEEEEecCCCCCH------------HHH-HHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHH
Confidence 356789999998654211 111 223344555555 8899986411 11111 1122222221
Q ss_pred ------h-h-cCCCcEEEEEccC--CCCHHHHHHHHHhhcc
Q psy17315 239 ------G-R-VGTNLKVGIVGVP--NVGKSTFFNVLTKRAF 269 (561)
Q Consensus 239 ------~-~-~~~~~~i~isg~~--~~Gks~l~~~l~~~~~ 269 (561)
. . ....+.+.+|+.. ..|...|.+++.+..+
T Consensus 199 ~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~ 239 (400)
T d1tq4a_ 199 NCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 239 (400)
T ss_dssp HHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence 1 1 2445567777753 4488999999887754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.4e-12 Score=119.41 Aligned_cols=161 Identities=17% Similarity=0.094 Sum_probs=74.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcc--cCCcccc-cccc---ccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLV--KGAAEGQ-GLGN---AFL 166 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~--~~~~~~~-~~~~---~~l 166 (561)
...++|+++|+||||||||+|+|++.+ .......++|...............+++++.. ....... .... ...
T Consensus 14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (188)
T d1puia_ 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 93 (188)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhh
Confidence 346899999999999999999999987 33444444444433322222234444444432 2111111 0001 111
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH-HhhhcC
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM-LLGRVG 242 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~-l~~~~~ 242 (561)
..+...+.++.+.|+.... ...... ....+...... +.||+|+.+...... ....+.. +.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~v~~k~D~~~~~~~~~-~~~~~~~~l~~~~~ 161 (188)
T d1puia_ 94 EKRQSLQGLVVLMDIRHPL----------KDLDQQ-MIEWAVDSNIAVLVLLTKADKLASGARKA-QLNMVREAVLAFNG 161 (188)
T ss_dssp HHCTTEEEEEEEEETTSCC----------CHHHHH-HHHHHHHTTCCEEEEEECGGGSCHHHHHH-HHHHHHHHHGGGCS
T ss_pred hhhhheeEEEEeecccccc----------hhHHHH-HHHHhhhccccccchhhhhhccCHHHHHH-HHHHHHHHHHhhCC
Confidence 1223333444444332100 001111 11122222222 789999874322111 1111222 222234
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+.+||++|.|++.|++.|.+
T Consensus 162 ~~~~i~vSA~~g~Gid~L~~~i~~ 185 (188)
T d1puia_ 162 DVQVETFSSLKKQGVDKLRQKLDT 185 (188)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.2e-12 Score=118.79 Aligned_cols=147 Identities=15% Similarity=0.150 Sum_probs=89.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--------------cccCCeEEEEeCCCcccCCccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--------------NKVPAFLNVVDIAGLVKGAAEGQGLG 162 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--------------~~~~~~i~l~DtpG~~~~~~~~~~~~ 162 (561)
+||+++|.||||||||+|+|++........|..+.+.... ......+.++||||......
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~------ 79 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS------ 79 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH------
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHH------
Confidence 6899999999999999999997652211111111111000 01123588999999643221
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----------hhccccccCcCCCCCccHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----------VDAKADSKKKMGPKKTDEG 232 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------v~NK~D~~~~~~~~~~~~~ 232 (561)
.....++++|++++|+|.+... .++.+...+.++... |+||+|+........ .
T Consensus 80 -~~~~~~~~~~~~i~v~d~~~~~-------------s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~---~ 142 (186)
T d2f7sa1 80 -LTTAFFRDAMGFLLMFDLTSQQ-------------SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE---R 142 (186)
T ss_dssp -HHHHHHTTCCEEEEEEETTCHH-------------HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH---H
T ss_pred -HHHHHHhcCCEEEEEEeccccc-------------cceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchH---H
Confidence 1122468899999999875311 222233333332221 799999976544432 2
Q ss_pred HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 233 EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 233 ~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+...+..... ...+.+|+++|.|+..++++|.+.
T Consensus 143 e~~~~~~~~~-~~~~e~Sak~~~~i~e~f~~l~~~ 176 (186)
T d2f7sa1 143 QARELADKYG-IPYFETSAATGQNVEKAVETLLDL 176 (186)
T ss_dssp HHHHHHHHTT-CCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2233333322 367999999999999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.9e-11 Score=110.40 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=94.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+||++||.+|||||||+++++..... ..+..+........ ......+.++|++|...... + ....++.+
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~---~~~~~~~~ 75 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----M---RDLYMKNG 75 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----H---HHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccc----c---cccccccc
Confidence 368999999999999999999876622 12222211111100 11223589999999864432 1 12346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-cch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.+ ..++.+..+...+... ... |+||+|+........ .+...+........
T Consensus 76 ~~~ilv~d~~~~----------~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~---~~~~~~~~~~~~~~ 142 (167)
T d1c1ya_ 76 QGFALVYSITAQ----------STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK---EQGQNLARQWCNCA 142 (167)
T ss_dssp SEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH---HHHHHHHHHTTSCE
T ss_pred ceeEEeeeccch----------hhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccch---hHHHHHHHHhCCCE
Confidence 999999987632 2344444333333322 111 899999986544322 22233333334456
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+.++|.+|+++
T Consensus 143 ~~e~Sak~g~gv~e~F~~l~~~ 164 (167)
T d1c1ya_ 143 FLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp EEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHHH
Confidence 7889999999999999999865
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.6e-11 Score=110.31 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
++.+||+++|.+|||||||+|++++........| +..+.... ......+.++|++|...... + ....+
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~-ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~---~~~~~ 74 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----L---RPLSY 74 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC-CSCCEEEEEEEETTEEEEEEEECCCCSGGGTT----T---GGGGC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccc-ceeeceeeeeeccCcceEEEeecccccccchh----h---hhhcc
Confidence 3458999999999999999999997652221112 21111111 11223578999998753321 1 23346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHHhcch-----hhccccccCcCC---------CCCccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l 234 (561)
+.+|++++|+|.+.++ .++.+.. +...+...... |+||+|+.+... .........
T Consensus 75 ~~~~~~ilv~d~~~~~----------sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (183)
T d1mh1a_ 75 PQTDVSLICFSLVSPA----------SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 144 (183)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred cccceeeeeeccchHH----------HHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHH
Confidence 8899999999876322 2222221 22222222222 899999864311 111111122
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.........+.+|+++|.|++.+|+.+.+...
T Consensus 145 ~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il 179 (183)
T d1mh1a_ 145 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (183)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence 22222233346688999999999999999998743
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.2e-11 Score=111.92 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=89.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+||++||.+|||||||++++++........|....+.... . .....+.++||||...... ....++.+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------~~~~~~~~ 73 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ--------REGHMRWG 73 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHH--------HHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeeccccccccc--------chhhhccc
Confidence 36899999999999999999998652222122111111110 1 1123688999999753221 12345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.++ .+..+..+......... + |+||+|+.+...........+.. .. ...
T Consensus 74 ~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~---~~-~~~ 139 (168)
T d2atva1 74 EGFVLVYDITDRG----------SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT---EL-ACA 139 (168)
T ss_dssp SEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH-TSE
T ss_pred ccceeecccCCcc----------chhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH---Hh-CCe
Confidence 9999999876322 23333332222222111 1 99999997554433222222222 22 235
Q ss_pred EEEEEccCCCC-HHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVG-KSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~G-ks~l~~~l~~~ 267 (561)
.+.+|+++|.| ++++|..|++.
T Consensus 140 ~~e~Saktg~gnV~e~F~~l~~~ 162 (168)
T d2atva1 140 FYECSACTGEGNITEIFYELCRE 162 (168)
T ss_dssp EEECCTTTCTTCHHHHHHHHHHH
T ss_pred EEEEccccCCcCHHHHHHHHHHH
Confidence 68899999986 99999988875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=2.5e-11 Score=110.06 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=93.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCC--cccccCcc-ccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFP--FCTIDPNE-NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~--~~T~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+||.++|.+|||||||++++.+........| +....... .......+.++||+|...... + ....++.+
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~~~~~~~ 76 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----M---REQYMRTG 76 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----S---HHHHHHHC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecccccccccccccccccccccccccccc----c---hhhhhhhc
Confidence 37899999999999999999997652212112 11111000 011224688999999854332 1 23346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-c---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-R---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.+ ..++.+..+...+.... . + ++||+|+.+...........+.. ... -.
T Consensus 77 ~~~llv~d~~d~----------~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~---~~~-~~ 142 (169)
T d1x1ra1 77 DGFLIVYSVTDK----------ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT---KYN-IP 142 (169)
T ss_dssp SEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH---HHT-CC
T ss_pred cEEEEecccccc----------hhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHH---HcC-CE
Confidence 999999987632 23444444444433221 1 1 79999998655443222222322 222 25
Q ss_pred EEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
.+.+|+++|. |++.+|+.+++..
T Consensus 143 ~~e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 143 YIETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp EEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCcCHHHHHHHHHHHH
Confidence 7889999876 9999999998753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=3.1e-12 Score=117.23 Aligned_cols=168 Identities=18% Similarity=0.136 Sum_probs=85.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH-------HHHHHHHHHHhhCCc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE-------KEINKIEKLVQRGDK 318 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~-------~~~~~l~~~~~~~~~ 318 (561)
.|.+.|.+|+|||||+|+|+++.+. ++..+|+|.....+ ....+.++||||+. ...+.+........
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~---~~~~~g~T~~~~~~--~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~- 75 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR---RGKRPGVTRKIIEI--EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI- 75 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS---SSSSTTCTTSCEEE--EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce---eeCCCCEeeccccc--ccccceecccCCceeccccccccccccchhhhhhh-
Confidence 5899999999999999999987554 34445665222222 22457789999951 11111111110000
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
... .-..|+..++.+. . +........... .+...+.+.+..+.. .++|+++|+||+| .
T Consensus 76 ---~~~---~~~~d~~~~vvD~--~--~~~~~~~~~~~~---------~~~~~d~~~~~~l~~-~~~p~iiv~NK~D--~ 133 (184)
T d2cxxa1 76 ---EDN---AKNIDVAVLVVDG--K--AAPEIIKRWEKR---------GEIPIDVEFYQFLRE-LDIPTIVAVNKLD--K 133 (184)
T ss_dssp ---HHH---GGGCCEEEEEEET--T--HHHHHHHHHHHT---------TCCCHHHHHHHHHHH-TTCCEEEEEECGG--G
T ss_pred ---hhc---ccccchheeeeec--c--ccchhhhhhhhc---------cccHHHHHHHHHHHH-cCCCEEEEEeeee--h
Confidence 000 0001111111111 1 111111111111 233345555554433 5899999999995 4
Q ss_pred hhhccchHHHHHHHHHhcC--CCCeEEeechhhhhhhCCCCHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDAND--PGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~--~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
+...+.....+.+...... ....++|+||++|.|+++|.+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~ 178 (184)
T d2cxxa1 134 IKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178 (184)
T ss_dssp CSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHH
Confidence 4322333333333222110 123589999999999988755543
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.4e-12 Score=115.92 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=92.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..|.....+..+-+... ..+.. ...++.+|||+|- +.+..+...+.+....++.
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~Dt~G~-e~~~~~~~~~~~~~~~~i~ 83 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI-KTVEINGEKVKLQIWDTAGQ-ERFRSITQSYYRSANALIL 83 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEE-EEEEETTEEEEEEEEEECCS-GGGHHHHGGGSTTCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEE-EEEEECCEEEEEEEEECCCc-hhhHHHHHHHHhccceEEE
Confidence 579999999999999999999887655544332111101 11222 2245788999994 4455555554444333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+...+..+..+... +.... ....|+++|+||+|. .+..
T Consensus 84 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~~~ilvgnK~D~--~~~~ 126 (171)
T d2ew1a1 84 TY----------------DITCEESFRCLPEWLRE------------------IEQYA-SNKVITVLVGNKIDL--AERR 126 (171)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECGGG--GGGC
T ss_pred ee----------------ecccchhhhhhhhhhhh------------------hcccc-cccccEEEEEeeccc--cccc
Confidence 22 12222333333222211 22121 136899999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....++++++.+.. +.+++++||++|.|++++..+..+.
T Consensus 127 ~v~~~~~~~~~~~~--~~~~~~~SAktg~gV~e~f~~l~~~ 165 (171)
T d2ew1a1 127 EVSQQRAEEFSEAQ--DMYYLETSAKESDNVEKLFLDLACR 165 (171)
T ss_dssp SSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred chhhhHHHHHHHhC--CCEEEEEccCCCCCHHHHHHHHHHH
Confidence 33445566666554 6789999999999998875554443
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=8e-11 Score=108.76 Aligned_cols=156 Identities=17% Similarity=0.110 Sum_probs=93.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||+++|.+|||||||++++.+........|.......... .....+.+|||||...... .....++.+|
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~~~~~ 76 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR-------LRPLSYPQTD 76 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-------TGGGGCTTCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhh-------hhhhcccccc
Confidence 68999999999999999999976632222221111100001 1223689999999754331 1233468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch-----hhccccccCcCC---------CCCccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l~~l~ 238 (561)
++++|+|.+.++ .++.+. .+...+...... |+||+|+.+... ...-...+...+.
T Consensus 77 ~~ilv~d~~~~~----------Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 146 (191)
T d2ngra_ 77 VFLVCFSVVSPS----------SFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLA 146 (191)
T ss_dssp EEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred eeecccccchHH----------HHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHH
Confidence 999999876432 223332 222223322222 899999874321 0011222223333
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
........+.+|+++|.|++.+|+.+.....
T Consensus 147 ~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~ 177 (191)
T d2ngra_ 147 RDLKAVKYVECSALTQKGLKNVFDEAILAAL 177 (191)
T ss_dssp HHTTCSCEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcCCCeEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 3333446788999999999999999988653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.22 E-value=1.2e-12 Score=120.00 Aligned_cols=158 Identities=16% Similarity=0.256 Sum_probs=82.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.|++.|.+|+|||||+|+|++........ ..+|+++.... ...+..+.+|||||+..... ........
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~--------~~~~~~~~ 72 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS--------EGKGLGLE 72 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGG--------GSCCSCHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecc--CCCceeeeeceeeecCCCeEEEcCCCeeecCch--------HHHHHHHH
Confidence 48999999999999999999875433332 22344333222 12335688999999632110 00111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhh-hhccCCceEEEecCChhhhhhhc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKL-NLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~-~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
++.....+++..++.+........+..... .+... .....+|+++|+||+|. ..
T Consensus 73 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~p~iiv~NK~D~--~~-- 127 (180)
T d1udxa2 73 FLRHIARTRVLLYVLDAADEPLKTLETLRK---------------------EVGAYDPALLRRPSLVALNKVDL--LE-- 127 (180)
T ss_dssp HHHHHTSSSEEEEEEETTSCHHHHHHHHHH---------------------HHHHHCHHHHHSCEEEEEECCTT--SC--
T ss_pred HHHHHHhhhhhhhhcccccccccchhhhhh---------------------hhhccccccchhhhhhhhhhhhh--hh--
Confidence 111111111111111111111111111111 11111 11136899999999954 32
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+.+.+.+... +.+++++||++|.|+++|.+..
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~~iSA~tg~gid~L~~~i 163 (180)
T d1udxa2 128 EEAVKALADALARE--GLAVLPVSALTGAGLPALKEAL 163 (180)
T ss_dssp HHHHHHHHHHHHTT--TSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCeEEEEEcCCCCCHHHHHHHH
Confidence 22334444555443 6889999999999998875543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.22 E-value=5e-11 Score=108.33 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=87.3
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
+..++..||++||.||||||||+|+|++.. ..+.+..+.+.... ......+.++|++|...... ......
T Consensus 8 ~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 78 (186)
T d1f6ba_ 8 GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--TIAGMTFTTFDLGGHIQARR-------VWKNYL 78 (186)
T ss_dssp TCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE--EETTEEEEEEEECC----CC-------GGGGGG
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEE--Eecccccccccccchhhhhh-------HHhhhh
Confidence 344567899999999999999999999877 33333333333211 22345678889988754332 234556
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--c-ch---hhccccccCcCCCCCccHHHHHHHhhh---
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--R-RS---VDAKADSKKKMGPKKTDEGEKKMLLGR--- 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--- 240 (561)
+.++.+++++|.+.... ..+....+....... . .+ +.||+|+..... ...+......
T Consensus 79 ~~~~~~~~~~d~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~-----~~~i~~~~~~~~~ 144 (186)
T d1f6ba_ 79 PAINGIVFLVDCADHER---------LLESKEELDSLMTDETIANVPILILGNKIDRPEAIS-----EERLREMFGLYGQ 144 (186)
T ss_dssp GGCSEEEEEEETTCGGG---------HHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC-----HHHHHHHHTCTTT
T ss_pred cccceeeeeeeccCccc---------hHHHHHHHHHhhcccccCCCceEEEEeccCccccCC-----HHHHHHHHhhccc
Confidence 77899999998653221 111111111111111 0 11 788999864322 1222222111
Q ss_pred -------------cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 241 -------------VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 241 -------------~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
......+.+||++|.|+++++++|.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 145 TTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp CCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred chhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 012246789999999999999999875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.9e-11 Score=109.11 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=91.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||+++|.+|||||||+|+|++..... .+..+.+...... ......+.++|+||...... .....++.+|
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-------~~~~~~~~~~ 76 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTGE 76 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHH-------HHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCcccccc-------chhhhhhccc
Confidence 689999999999999999999865222 2222222111110 11123588999999864332 1123357899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.+ ..++.+..+...+..... + |+||+|+.++.. ...+...+..... -+.
T Consensus 77 ~~iiv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~-~~~ 141 (166)
T d1ctqa_ 77 GFLCVFAINNT----------KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTV----ESRQAQDLARSYG-IPY 141 (166)
T ss_dssp EEEEEEETTCH----------HHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCS----CHHHHHHHHHHHT-CCE
T ss_pred ccceeeccccc----------ccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccc----cHHHHHHHHHHhC-CeE
Confidence 99999987632 233344444344333221 1 899999865422 2223333332222 257
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+.++++.+++.
T Consensus 142 ~e~Sak~g~gi~e~f~~i~~~ 162 (166)
T d1ctqa_ 142 IETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp EECCTTTCTTHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHH
Confidence 899999999999999999875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.21 E-value=1.8e-11 Score=109.61 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=89.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+.+||++||.||||||||+|++++.. ..+.+..+.+.. ........+.++|+||...... ........++
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 74 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYKNLKFQVWDLGGLTSIRP-------YWRCYYSNTD 74 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEETTEEEEEEEECCCGGGGG-------GGGGGCTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeee--eeccCceEEEEeeccccccccc-------cchhhhhhhh
Confidence 45789999999999999999999877 333332222221 1122345788999998754332 2233457778
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHH---hhhcCCC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKML---LGRVGTN 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l---~~~~~~~ 244 (561)
.+++++|..... ........+...+...... +.||+|+...... ......+ .......
T Consensus 75 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~----~~i~~~~~~~~~~~~~~ 141 (169)
T d1upta_ 75 AVIYVVDSCDRD---------RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS----SEMANSLGLPALKDRKW 141 (169)
T ss_dssp EEEEEEETTCCT---------THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH----HHHHHHHTGGGCTTSCE
T ss_pred hhhhhhhhhhcc---------hhhhccchhhhhhhhhccccceEEEEEeeccccccccH----HHHHHHHHHHHHhcCCC
Confidence 999999765211 1111111111111111111 8899999743221 1111221 1222345
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+||++|.|+..++++|.+..
T Consensus 142 ~~~~~SA~~g~gv~e~~~~l~~~l 165 (169)
T d1upta_ 142 QIFKTSATKGTGLDEAMEWLVETL 165 (169)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.8e-11 Score=111.29 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=90.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc-cCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA-ENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~-~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||+|++++..... ...+.+..+.... .. ....+.++|+||... . ...+ ....++.
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g-~--e~~~---~~~~~~~ 77 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-E--NEWL---HDHCMQV 77 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-H--HHHH---HHCCCCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccc-c--cccc---ccccccc
Confidence 689999999999999999999876332 2222222222111 11 123578899886421 0 0111 1234789
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .++.+..+..++..... + |+||+|+.+.......+...+....+ -
T Consensus 78 ~~~~ilvfd~t~~~----------s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~----~ 143 (172)
T d2g3ya1 78 GDAYLIVYSITDRA----------SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD----C 143 (172)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT----C
T ss_pred cceeeeeecccccc----------hhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcC----C
Confidence 99999999875322 23333333333333211 1 89999987654443222222332222 2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+++|.|++.++..|+++
T Consensus 144 ~~~e~Sak~g~~i~~~f~~l~~~ 166 (172)
T d2g3ya1 144 KFIETSAAVQHNVKELFEGIVRQ 166 (172)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHH
T ss_pred eEEEEeCCCCcCHHHHHHHHHHH
Confidence 56789999999999999999875
|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: G domain-linked domain domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.21 E-value=6.5e-13 Score=102.77 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=51.6
Q ss_pred cccCCCce--eccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEE
Q psy17315 471 FTAGQDEV--KAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 548 (561)
Q Consensus 471 ~t~~~~ev--~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~ 548 (561)
|+...+++ ++|++|+|+|+.|+|+.||+|++++|++|.+|. ..|++|.+|+|+|||||+|-
T Consensus 12 ~~~~~g~vl~D~~~Lp~GsTv~D~A~~IH~dlg~~~~~A~~~~-----------------~g~~v~l~~~L~dgDvVeIi 74 (76)
T d1wxqa2 12 LTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINAR-----------------TKRRVGEDYELQFNDIVKIV 74 (76)
T ss_dssp ---CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETT-----------------TCSBCCTTCCCCTTEEEEEE
T ss_pred EECCCCCCccccEEeCCCCcHHHHHHHHhHHHHhheEEEEECc-----------------CCEECCCCcCccCCCEEEEE
Confidence 45555677 889999999999999999999999999998542 34899999999999999984
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.20 E-value=9.8e-12 Score=120.85 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=64.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccc--ccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAF--LSH 168 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~--l~~ 168 (561)
...++|+++|.||||||||+|+|+|.. +.+++.+++|++..... ..+..+.++||||+.........+.... ...
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~ 109 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 109 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence 456899999999999999999999988 77888999999876552 3455799999999986543222222111 122
Q ss_pred cccCCEEEEEeccc
Q psy17315 169 ISACDAIFHLCKEK 182 (561)
Q Consensus 169 i~~~D~il~VvD~~ 182 (561)
....|++++|++..
T Consensus 110 ~~~~~~il~v~~~~ 123 (257)
T d1h65a_ 110 DKTIDVLLYVDRLD 123 (257)
T ss_dssp TCEECEEEEEEESS
T ss_pred cCCCCeEEEEEECC
Confidence 34568888888543
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=8.8e-12 Score=112.91 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=86.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
+|.+.|.+|+|||+|++.+.+..+. ..+++.+.. .....+......+.+|||+|. +....+...+.+....++..+
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~-e~~~~~~~~~~~~~d~~ilv~ 79 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ-DGGRWLPGHCMAMGDAYVIVY 79 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC--------CHHHHHTSCSEEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHhCCccC--CcCCeeeeeecceeeccccccceeeeecccc-cccceecccchhhhhhhceec
Confidence 6899999999999999999887432 222222221 111112222346889999995 445555555554444333222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
++.+.+.+..+..|+.+ +.........|+++|+||+|. ......
T Consensus 80 ----------------d~t~~~s~~~~~~~~~~------------------i~~~~~~~~~piilvgnK~Dl--~~~~~v 123 (168)
T d2gjsa1 80 ----------------SVTDKGSFEKASELRVQ------------------LRRARQTDDVPIILVGNKSDL--VRSREV 123 (168)
T ss_dssp ----------------ETTCHHHHHHHHHHHHH------------------HHHHCC--CCCEEEEEECTTC--GGGCCS
T ss_pred ----------------cccccccccccccccch------------------hhcccccccceEEEeecccch--hhhcch
Confidence 23444555555554433 111111246799999999954 332333
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
...+.+++.... +.+++.+||++|.|++++.+...++
T Consensus 124 ~~~~~~~~~~~~--~~~~~e~Sak~~~~v~~~f~~l~~~ 160 (168)
T d2gjsa1 124 SVDEGRACAVVF--DCKFIETSAALHHNVQALFEGVVRQ 160 (168)
T ss_dssp CHHHHHHHHHHH--TSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc--CCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 345555665554 6789999999999998876655443
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=1e-12 Score=120.95 Aligned_cols=58 Identities=26% Similarity=0.360 Sum_probs=39.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhh-hHhhhcccHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEII-NEELRLKDVEHIEK 304 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~-~~el~l~Dt~Gi~~ 304 (561)
+.|++.|.+|+|||||+|.|++....... ..++|+++... .... +..+.+|||||+.+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~--~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~ 61 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVETDDGRSFVMADLPGLIE 61 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceec--CCCceEeeeeceeEecCCcEEEEecCCCccc
Confidence 35899999999999999999987543332 33345544432 2222 34688999999743
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=1.7e-11 Score=110.26 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=89.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||+|++++.... ..+.++.+...... ......+.++|++|...... ......++++
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 76 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYYRNV 76 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHHTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhcc------ccceeeecCC
Confidence 68999999999999999999976622 22222222221111 12234688999999653221 0112346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-c---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-R---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.+ ..++.+..+...+.... . + |+||+|+.+...... .+...+..... ..
T Consensus 77 d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~---~~~~~~~~~~~-~~ 142 (165)
T d1z06a1 77 HAVVFVYDMTNM----------ASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT---DLAQKFADTHS-MP 142 (165)
T ss_dssp CEEEEEEETTCH----------HHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH---HHHHHHHHHTT-CC
T ss_pred CceEEEEEeehh----------hhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhH---HHHHHHHHHCC-CE
Confidence 999999987632 23444443333333321 1 1 899999986554332 22233322222 36
Q ss_pred EEEEEccC---CCCHHHHHHHHH
Q psy17315 246 KVGIVGVP---NVGKSTFFNVLT 265 (561)
Q Consensus 246 ~i~isg~~---~~Gks~l~~~l~ 265 (561)
.+.+||++ |.|+.++|..|+
T Consensus 143 ~~e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 143 LFETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp EEECCSSSGGGGSCHHHHHHHHC
T ss_pred EEEEecccCCcCcCHHHHHHHhC
Confidence 78899886 559989888763
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=3.9e-12 Score=114.72 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=90.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccc-cccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVN-PVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~d-p~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+++.-... ...........+.+|||+|.++ ...+...+.+.....+..
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE-FDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG-TTCCCHHHHTTCCEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccc-hhhhhhhhhccCceEEEE
Confidence 47899999999999999999987655443332211111 1111111224578999999543 222222222222221111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.+ +.... ...|+++|+||+|. .+...
T Consensus 82 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~~iilVgnK~Dl--~~~~~ 123 (164)
T d1z2aa1 82 F----------------STTDRESFEAISSWREK------------------VVAEV--GDIPTALVQNKIDL--LDDSC 123 (164)
T ss_dssp E----------------ETTCHHHHHTHHHHHHH------------------HHHHH--CSCCEEEEEECGGG--GGGCS
T ss_pred E----------------eccchhhhhhccccccc------------------ccccC--CCceEEEeeccCCc--cccee
Confidence 1 22333444444333322 22121 47899999999954 33233
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
...++++++++.. +.+++++||++|.|++++.+...+.+
T Consensus 124 v~~~~~~~~~~~~--~~~~~e~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 124 IKNEEAEGLAKRL--KLRFYRTSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp SCHHHHHHHHHHH--TCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred eeehhhHHHHHHc--CCEEEEeccCCCcCHHHHHHHHHHHH
Confidence 3445566666665 67899999999999988766555443
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=1.4e-11 Score=115.04 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=56.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
++|+++|.||||||||+|+|++... .|++|+...... ..+..+.++||||...... .....+...+..++.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~~~~~~ 76 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY---KLSDYLKTRAKFVKG 76 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC----CCBCCCSSCEEETTGGGSSCEEEECCCCGGGTH---HHHHHHHHHGGGEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCeEEecceEEEEEeCCeEEEEEecccccchhh---HHHHHHHHHhhhccc
Confidence 5899999999999999999998763 256666554432 2345689999999864332 222334455677799
Q ss_pred EEEEeccc
Q psy17315 175 IFHLCKEK 182 (561)
Q Consensus 175 il~VvD~~ 182 (561)
+++++|+.
T Consensus 77 ~i~~vd~~ 84 (209)
T d1nrjb_ 77 LIFMVDST 84 (209)
T ss_dssp EEEEEETT
T ss_pred cceEEEEe
Confidence 99999875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.17 E-value=1.1e-11 Score=112.24 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=91.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|+++++...|.....+.+.........+......+.+||++|..+ ...+.....+....++..+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~-~~~~~~~~~~~~~~~ilv~ 83 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-YAAIRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC----CHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccc-hhhhhhhcccccceeEEEe
Confidence 479999999999999999998876654433322111100001122234678899999654 4444444443333322222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
.+.+.+.+..+..|+.+ +.........|+++|+||+|. ......
T Consensus 84 ----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piiivgnK~Dl--~~~~~v 127 (168)
T d1u8za_ 84 ----------------SITEMESFAATADFREQ------------------ILRVKEDENVPFLLVGNKSDL--EDKRQV 127 (168)
T ss_dssp ----------------ETTCHHHHHHHHHHHHH------------------HHHHHCCTTSCEEEEEECGGG--GGGCCS
T ss_pred ----------------eccchhhhhhHHHHHHH------------------HHHhhCCCCCcEEEEeccccc--cccccc
Confidence 22334555555454433 111111246899999999954 332333
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..++++++++.. +.+++++||++|.|++++.+..
T Consensus 128 ~~~~~~~~~~~~--~~~~~e~Sak~g~gv~e~f~~l 161 (168)
T d1u8za_ 128 SVEEAKNRADQW--NVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp CHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHc--CCeEEEEcCCCCcCHHHHHHHH
Confidence 455666666665 6789999999999997764443
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.17 E-value=2.1e-13 Score=125.05 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=83.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..|++.|.+|+|||+|+|+|++.. ...++..++++... .. ....+..+.++||||+..........+.+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~--~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~------- 76 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVK--VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQ------- 76 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC--CSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHH-------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--ceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccc-------
Confidence 369999999999999999999973 34444455555322 22 23345678999999973211111111000
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~~~ 401 (561)
.... .+..+|+++.|++. . ......+..++..+.. ...+|+++|+||+|. ...
T Consensus 77 ~~~~--------------~~~~ad~il~v~D~------~----~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl--~~~ 130 (178)
T d1wf3a1 77 EVYE--------------ALADVNAVVWVVDL------R----HPPTPEDELVARALKPLVGKVPILLVGNKLDA--AKY 130 (178)
T ss_dssp HHHH--------------HTSSCSEEEEEEET------T----SCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG--CSS
T ss_pred cccc--------------ccccccceeeeech------h----hhhcccccchhhheeccccchhhhhhhccccc--ccC
Confidence 0000 01111222222221 0 1233333333333221 136899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+.. ++.+ ....+...++++||++|.|+++|.+
T Consensus 131 ~~~~---~~~~-~~~~~~~~~~~iSA~~~~gi~~L~~ 163 (178)
T d1wf3a1 131 PEEA---MKAY-HELLPEAEPRMLSALDERQVAELKA 163 (178)
T ss_dssp HHHH---HHHH-HHTSTTSEEEECCTTCHHHHHHHHH
T ss_pred HHHH---HHHH-HhhcccCceEEEecCCCCCHHHHHH
Confidence 2222 2222 2223457789999999999877633
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.2e-11 Score=111.73 Aligned_cols=156 Identities=12% Similarity=0.141 Sum_probs=91.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.++|.+|+|||+|++++++..+.....+.+ +..... ..+......+.+||++|.+. ...+...+.+....++..
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQ-FASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTC-CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCCce-eeeeeeeeecCcceEeeccccCCCccc-cccchHHHhhcccceeee
Confidence 479999999999999999999987654443322 221111 11111224678899999433 333333333333333222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..+... +.........|+++|+||+|. .....
T Consensus 82 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilvgnK~Dl--~~~~~ 125 (167)
T d1kaoa_ 82 Y----------------SLVNQQSFQDIKPMRDQ------------------IIRVKRYEKVPVILVGNKVDL--ESERE 125 (167)
T ss_dssp E----------------ETTCHHHHHHHHHHHHH------------------HHHHTTTSCCCEEEEEECGGG--GGGCC
T ss_pred e----------------eecchhhhhhhhchhhh------------------hhhhccCCCCCEEEEEEccch--hhccc
Confidence 2 23444555555444332 111111246899999999954 33233
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...++..++++.. +.+++.+||++|.|++++.+..
T Consensus 126 ~~~~~~~~~~~~~--~~~~~e~Sak~g~~i~e~f~~i 160 (167)
T d1kaoa_ 126 VSSSEGRALAEEW--GCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp SCHHHHHHHHHHH--TSCEEEECTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHc--CCeEEEECCCCCcCHHHHHHHH
Confidence 3445555555554 6789999999999998775443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=9.7e-11 Score=106.85 Aligned_cols=150 Identities=12% Similarity=0.146 Sum_probs=90.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcc-cCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAA-ENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~-~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.+||+++|.+|||||||++++.+..... .+..+.+...... ......+.++||+|.... ..++.+|
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~------------~~~~~ad 72 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA------------KFSGWAD 72 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH------------HHHHHCS
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc------------ccccccc
Confidence 4799999999999999999999876321 1111111110000 112245889999996421 2357899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
++++|+|.+. ...++.+..+.+++..+... |+||.|+........ .......+.......
T Consensus 73 ~~ilVfd~~~----------~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v-~~~~~~~~~~~~~~~ 141 (175)
T d2bmja1 73 AVIFVFSLED----------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV-GDARARALCADMKRC 141 (175)
T ss_dssp EEEEEEETTC----------HHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCS-CHHHHHHHHHTSTTE
T ss_pred eeEEEeeccc----------chhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcch-hHHHHHHHHHHhCCC
Confidence 9999998753 22344555555555443221 677766543222111 222333333333344
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+||++|.|++.+|..+.++.
T Consensus 142 ~~~e~SAk~~~~v~~~F~~l~~~i 165 (175)
T d2bmja1 142 SYYETCATYGLNVDRVFQEVAQKV 165 (175)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCcCHHHHHHHHHHHH
Confidence 568899999999999999888763
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.14 E-value=3.4e-11 Score=112.83 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=88.5
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCc----------ccCCCcccc----------------cCccc-------ccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAA----------AENFPFCTI----------------DPNEN-------NKV 139 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~----------~~~~~~~T~----------------~~~~~-------~~~ 139 (561)
.+..++|+++|..++|||||+|+|++.... .......+. ..... ...
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF 84 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence 345579999999999999999999863210 000000000 00000 001
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hh
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VD 215 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~ 215 (561)
...+.++||||..... ......+..||++++|+|+...- ......+ .-..+..++. + +.
T Consensus 85 ~r~~~iiD~PGH~df~-------~~~~~~~~~ad~ailvVda~~gi------~~~~t~e----~~~~~~~~~i~~iIV~v 147 (205)
T d2qn6a3 85 LRRISFIDAPGHEVLM-------ATMLSGAALMDGAILVVAANEPF------PQPQTRE----HFVALGIIGVKNLIIVQ 147 (205)
T ss_dssp EEEEEEEECSCHHHHH-------HHHHHTSSCCSEEEEEEETTSCS------SCHHHHH----HHHHHHHTTCCCEEEEE
T ss_pred eEEEEEeccchHHHHH-------hhhhcceeccccccccccccccc------cchhHHH----HHHHHHHcCCceeeecc
Confidence 1258899999975322 23355677899999999875310 0000011 1112233333 2 68
Q ss_pred ccccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 216 AKADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 216 NK~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
||+|+........ ........+.. ....+.|++||++|.|+..|++.+.+..
T Consensus 148 NK~Dl~~~~~~~~-~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i 201 (205)
T d2qn6a3 148 NKVDVVSKEEALS-QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 201 (205)
T ss_dssp ECGGGSCHHHHHH-HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ccCCCccchHHHH-HHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence 9999984322111 01112222221 1345689999999999999999988763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=1.5e-11 Score=111.48 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=89.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.++|.+|+|||+|++++.+..+.....+ +.|.......+.. ...++.+|||||- +....+...+.+....++.
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~wDt~G~-e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVS-TVGIDFKVKTIYRNDKRIKLQIWDTAGQ-ERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCC-CCSEEEEEEEEEETTEEEEEEEEEECCS-GGGHHHHHTTTTTCCEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCccccc-ccccceeeEEEEeecceEEEEEEECCCc-hhhHHHHHHHHhcCCEEEE
Confidence 5799999999999999999998765443332 2232111112221 2246889999994 3455555554433333222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..+.. .+.... ....|+++|+||+|.. ...
T Consensus 84 v~----------------d~~~~~s~~~~~~~~~------------------~~~~~~-~~~~~iivv~nK~D~~--~~~ 126 (169)
T d3raba_ 84 MY----------------DITNEESFNAVQDWST------------------QIKTYS-WDNAQVLLVGNKCDME--DER 126 (169)
T ss_dssp EE----------------ETTCHHHHHTHHHHHH------------------HHHHHC-CSCCEEEEEEECTTCG--GGC
T ss_pred EE----------------ECccchhhhhhhhhhh------------------hhhccc-CCcceEEEEEeecccc--ccc
Confidence 22 1222233332222211 111122 2468899999999643 222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....++++++++.. +.+++.+||++|.|+.++.+...
T Consensus 127 ~v~~~~~~~~~~~~--~~~~~e~Sak~g~gv~e~f~~l~ 163 (169)
T d3raba_ 127 VVSSERGRQLADHL--GFEFFEASAKDNINVKQTFERLV 163 (169)
T ss_dssp CSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred ccchhhhHHHHHHc--CCEEEEecCCCCcCHHHHHHHHH
Confidence 33345555565554 67899999999999888755443
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.4e-11 Score=112.12 Aligned_cols=158 Identities=10% Similarity=0.080 Sum_probs=92.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++++++..|.....+. .+ +.. ..+... ...+.+|||+|..+ ...+...+.+....++
T Consensus 7 ~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t-~~--~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~~~~~~~~i 82 (173)
T d2fn4a1 7 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT-IE--DSYTKICSVDGIPARLDILDTAGQEE-FGAMREQYMRAGHGFL 82 (173)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCSSCCTT-CC--EEEEEEEEETTEEEEEEEEECCCTTT-TSCCHHHHHHHCSEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccc-cc--cceeeEeccCCeeeeeeccccccccc-cccccchhhccceeee
Confidence 57999999999999999999987665433322 11 111 112222 24577899999543 2222222222222222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|... +.........|+++|+||+|. ...
T Consensus 83 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~p~ilvgnK~Dl--~~~ 126 (173)
T d2fn4a1 83 LVF----------------AINDRQSFNEVGKLFTQ------------------ILRVKDRDDFPVVLVGNKADL--ESQ 126 (173)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHHTSSCCCEEEEEECGGG--GGG
T ss_pred eec----------------ccccccccchhhhhhHH------------------HHHHhccCCCceEEEEEeech--hhc
Confidence 221 23334444444444332 111111246799999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....++..+++... +.+++.+||++|.|++++.+...+..
T Consensus 127 ~~~~~~~~~~~~~~~--~~~~~e~Sak~g~gv~e~f~~l~~~i 167 (173)
T d2fn4a1 127 RQVPRSEASAFGASH--HVAYFEASAKLRLNVDEAFEQLVRAV 167 (173)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHhc--CCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 334455666666665 68899999999999998866655543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=2.3e-12 Score=118.46 Aligned_cols=170 Identities=19% Similarity=0.245 Sum_probs=87.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|++.|.+|+|||||+|+|++.. ...+...++++ .... .+...+..+.++||+|+.+.......... ...
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~---~~~ 81 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVE---KYS 81 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST--TEEECCCC------CCEEEEETTEEEEESSCSCC-----------C---CSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--cceeecccccccccceeeeccCCceeeeeccCCccccccccccccc---cch
Confidence 34689999999999999999999863 22222223333 2222 23444567889999997543222111111 100
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
....+..+. .+|++..+ .+ . ...+..+....+..... ..+|+|+|+||+|. ..
T Consensus 82 ~~~~~~~~~--------------~~dvii~v----~d--~----~~~~~~~~~~~~~~~~~-~~~~~i~v~nK~D~--~~ 134 (186)
T d1mkya2 82 NYRVVDSIE--------------KADVVVIV----LD--A----TQGITRQDQRMAGLMER-RGRASVVVFNKWDL--VV 134 (186)
T ss_dssp CHHHHHHHH--------------HCSEEEEE----EE--T----TTCCCHHHHHHHHHHHH-TTCEEEEEEECGGG--ST
T ss_pred hHHHHHHHh--------------cCCEEEEe----ec--c----cccchhhHHHHHHHHHH-cCCceeeeccchhh--hc
Confidence 011111010 01111111 11 0 12344455554444433 58999999999954 32
Q ss_pred hccchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.......++.+.+... .++.+++++||++|.|+++|.+...+.|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 135 HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2333333333333321 2357899999999999988876665544
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.12 E-value=9.4e-12 Score=115.86 Aligned_cols=153 Identities=16% Similarity=0.107 Sum_probs=89.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC----------------CcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS----------------AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEG 158 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~----------------~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~ 158 (561)
++|+++|.+++|||||+|+|++.- .......|.|.+.... ......+.++||||.....
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~--- 80 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV--- 80 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH---
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH---
Confidence 689999999999999999997521 1112234666654332 2345679999999975322
Q ss_pred cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHH
Q psy17315 159 QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 159 ~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l 234 (561)
......++.+|++++|||+...- ..+=...-..+..+... +.||+|.......-.....++
T Consensus 81 ----~~~~~~~~~aD~allVVda~~G~-----------~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i 145 (196)
T d1d2ea3 81 ----KNMITGTAPLDGCILVVAANDGP-----------MPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEI 145 (196)
T ss_dssp ----HHHHHTSSCCSEEEEEEETTTCS-----------CHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHH
T ss_pred ----HHHHHHHhhcCeEEEEEEcCCCC-----------chhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHH
Confidence 23456678999999999886311 00001111122333322 689999874211101111223
Q ss_pred HHHhhhcC----CCcEEEEEccCC----------CCHHHHHHHHHhh
Q psy17315 235 KMLLGRVG----TNLKVGIVGVPN----------VGKSTFFNVLTKR 267 (561)
Q Consensus 235 ~~l~~~~~----~~~~i~isg~~~----------~Gks~l~~~l~~~ 267 (561)
++++.... ..+.+++||++| .|..+|++++.+.
T Consensus 146 ~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~ 192 (196)
T d1d2ea3 146 RELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (196)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence 34433322 245789999887 3666777766553
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=4.4e-11 Score=108.62 Aligned_cols=167 Identities=14% Similarity=0.093 Sum_probs=84.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-c-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-D-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+++..+.....+....+..... . .......+.+|||+|.++ .......+.+....++.
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-FQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------CCSTTCCEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-hhhHHHHHhhccceEEE
Confidence 47999999999999999999987655443332221111111 1 111123578999999543 33333333222222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+.+..+..|+.+ +............|+++|+||+|. ....
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~---------------i~~~~~~~~~~~~piilv~nK~Dl--~~~~ 128 (175)
T d1ky3a_ 82 VY----------------DVTNASSFENIKSWRDE---------------FLVHANVNSPETFPFVILGNKIDA--EESK 128 (175)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH---------------HHHHHCCSCTTTCCEEEEEECTTS--CGGG
T ss_pred Ee----------------ecccccccchhhhcchh---------------hhhhhhhcccccCcEEEEecccch--hhhh
Confidence 11 12222333333333322 111111111136899999999964 2211
Q ss_pred c-chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 403 N-KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 403 ~-~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
. ...+.+++++... ...+++++||++|.|++++.+...+..++
T Consensus 129 ~~v~~~~~~~~~~~~-~~~~~~e~SA~~g~gv~e~f~~l~~~~l~ 172 (175)
T d1ky3a_ 129 KIVSEKSAQELAKSL-GDIPLFLTSAKNAINVDTAFEEIARSALQ 172 (175)
T ss_dssp CCSCHHHHHHHHHHT-TSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHc-CCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 1 2334555555554 24678999999999998886665554443
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.9e-11 Score=110.74 Aligned_cols=157 Identities=14% Similarity=0.199 Sum_probs=88.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++++++..+.....++..........+......+.+|||+|.+. .......+.+....++..+
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~~~~a~~~ilv~ 81 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ-FPAMQRLSISKGHAFILVY 81 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS-CHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceecccccccccc-ccccccccccceeEEEEEe
Confidence 478999999999999999999876554333322111111111111223577899999543 3333333333332222222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
++.+.+.+..+..+... ..... ......|+++|+||+|. ......
T Consensus 82 ----------------d~~~~~s~~~~~~~~~~---------------~~~~~--~~~~~~piilVgnK~Dl--~~~~~v 126 (171)
T d2erxa1 82 ----------------SITSRQSLEELKPIYEQ---------------ICEIK--GDVESIPIMLVGNKCDE--SPSREV 126 (171)
T ss_dssp ----------------ETTCHHHHHTTHHHHHH---------------HHHHH--C---CCCEEEEEECGGG--GGGCCS
T ss_pred ----------------ecccccchhcccchhhh---------------hhhhh--ccCCCCcEEEEeecccc--cccccc
Confidence 23333444444333322 11111 11246899999999954 332333
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..++++++++.. +.+++.+||++|.|++++.+.
T Consensus 127 ~~~e~~~~~~~~--~~~~~e~Sak~~~~v~e~f~~ 159 (171)
T d2erxa1 127 QSSEAEALARTW--KCAFMETSAKLNHNVKELFQE 159 (171)
T ss_dssp CHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHH
T ss_pred cHHHHHHHHHHc--CCeEEEEcCCCCcCHHHHHHH
Confidence 445666666665 678999999999998776443
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=4.9e-11 Score=107.54 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=90.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++++.+..+.....+...... .+...+......+.+|||+|.++ ...+...+.+....++..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-FRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG-TCHHHHHHHHTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchh-HHHHHHHHhcCCcEEEEE
Confidence 4799999999999999999998765544333221111 11112222234688999999543 444444444333332222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..+... +.... ....|+++|.||+|.+. ...
T Consensus 84 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~iilvgnK~Dl~~--~~~ 126 (166)
T d1z0fa1 84 Y----------------DITRRSTYNHLSSWLTD------------------ARNLT-NPNTVIILIGNKADLEA--QRD 126 (166)
T ss_dssp E----------------ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTCGG--GCC
T ss_pred e----------------ccCchHHHHHHHHHHHH------------------HHhhc-cccceEEEEcccccchh--hcc
Confidence 2 22333444333333221 11111 14689999999996432 233
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
...++.+++++.. +.+++.+||++|.|++++.+.
T Consensus 127 ~~~~~~~~~~~~~--~~~~~e~Saktg~~v~e~f~~ 160 (166)
T d1z0fa1 127 VTYEEAKQFAEEN--GLLFLEASAKTGENVEDAFLE 160 (166)
T ss_dssp SCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHH
Confidence 4455666666665 678999999999998877443
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=3e-11 Score=109.04 Aligned_cols=156 Identities=16% Similarity=0.177 Sum_probs=92.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++++.+..|.....+....+..+. .........+.+|||+|.++ ...+...+.+.....+..
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~i~v 83 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER-FRALAPMYYRGSAAAIIV 83 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-GGGGTHHHHTTCSEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchh-hhHHHHHHHhhccceEEE
Confidence 4789999999999999999998876544333221111111 11111223467899999543 444444444433333222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..+... +..... ...|+++|+||+|. .+...
T Consensus 84 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~~iilvgnK~Dl--~~~~~ 126 (167)
T d1z0ja1 84 Y----------------DITKEETFSTLKNWVRE------------------LRQHGP-PSIVVAIAGNKCDL--TDVRE 126 (167)
T ss_dssp E----------------ETTCHHHHHHHHHHHHH------------------HHHHSC-TTSEEEEEEECTTC--GGGCC
T ss_pred e----------------eechhhhhhhHHHhhhh------------------hhhccC-CcceEEEecccchh--ccccc
Confidence 2 23334454444333221 111121 47899999999954 33334
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...++.++++... +.+++.+||++|.|++++....
T Consensus 127 v~~~~~~~~~~~~--~~~~~e~SAk~~~nV~e~f~~l 161 (167)
T d1z0ja1 127 VMERDAKDYADSI--HAIFVETSAKNAININELFIEI 161 (167)
T ss_dssp SCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHH
T ss_pred hhHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHH
Confidence 4455666776665 6889999999999988775443
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=4.3e-11 Score=108.75 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=92.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++++.+..+.....+....+.... .........+.+|||+|.+ ....+.+.+.+.....+..
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE-RFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG-GGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCch-hhhhhHHHHhhhCCEEEEE
Confidence 5799999999999999999988765443333221111111 0111223468899999943 3444444443333222221
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+....+..+... +..... ...|+++|+||+|.+. ...
T Consensus 85 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piivv~nK~D~~~--~~~ 127 (174)
T d2bmea1 85 Y----------------DITSRETYNALTNWLTD------------------ARMLAS-QNIVIILCGNKKDLDA--DRE 127 (174)
T ss_dssp E----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECGGGGG--GCC
T ss_pred E----------------ecccchhHHHHhhhhcc------------------cccccC-CceEEEEEEecccccc--hhc
Confidence 1 12222333322222221 111111 4689999999996432 233
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
...+...++.... +.+++.+||++|.|++++.+...+..++
T Consensus 128 ~~~~~~~~~~~~~--~~~~~e~Sak~~~gi~e~f~~l~~~i~~ 168 (174)
T d2bmea1 128 VTFLEASRFAQEN--ELMFLETSALTGENVEEAFVQCARKILN 168 (174)
T ss_dssp SCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhC--CCEEEEeeCCCCcCHHHHHHHHHHHHHH
Confidence 3444555555554 6789999999999999886655554433
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=6.9e-11 Score=108.55 Aligned_cols=162 Identities=13% Similarity=0.161 Sum_probs=99.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc--c--cc-------hhhhhHhhhcccHHHHHHHHHHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP--V--RD-------IEIINEELRLKDVEHIEKEINKIEKLV 313 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp--~--~~-------~~~~~~el~l~Dt~Gi~~~~~~l~~~~ 313 (561)
.+|.+.|.+|+|||+|++++.+..+.....+....+... + .+ .......+.+|||+|- +.+..+...+
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~-e~~~~~~~~~ 84 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-ERFRSLTTAF 84 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-HHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcc-hhhHHHHHHH
Confidence 579999999999999999999876544333221111100 0 00 0011235889999995 4466666666
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
.++...++..+ ++++.+.+..+..+..+ .. ........|+++|+||
T Consensus 85 ~~~~~~~i~v~----------------d~~~~~s~~~~~~~~~~--~~----------------~~~~~~~~~iilv~nK 130 (186)
T d2f7sa1 85 FRDAMGFLLMF----------------DLTSQQSFLNVRNWMSQ--LQ----------------ANAYCENPDIVLIGNK 130 (186)
T ss_dssp HTTCCEEEEEE----------------ETTCHHHHHHHHHHHHT--CC----------------CCCTTTCCEEEEEEEC
T ss_pred HhcCCEEEEEE----------------eccccccceeeeeccch--hh----------------hhccCCCceEEEEeee
Confidence 55554443333 33444566666555543 10 0111135789999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
+|. ........+++.++++.. +.+++++||++|.|+.++.+...+..+
T Consensus 131 ~Dl--~~~~~v~~~e~~~~~~~~--~~~~~e~Sak~~~~i~e~f~~l~~~i~ 178 (186)
T d2f7sa1 131 ADL--PDQREVNERQARELADKY--GIPYFETSAATGQNVEKAVETLLDLIM 178 (186)
T ss_dssp TTC--GGGCCSCHHHHHHHHHHT--TCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred ccc--hhhhcchHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 954 333344455666776665 678999999999999888666555443
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=7.3e-10 Score=101.12 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=89.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCC--cccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFP--FCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~--~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||+++|.+|||||||++++..........| +.+...... ......+.++||+|...... + ....++.+|
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~~~ 75 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPDSD 75 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT----T---GGGGCTTCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccc----c---ccchhhhhh
Confidence 6899999999999999999987653211112 111111000 11223578999999754332 1 123468999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch-----hhccccccCcC---------CCCCccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS-----VDAKADSKKKM---------GPKKTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~-----v~NK~D~~~~~---------~~~~~~~~~l~~l~ 238 (561)
++++|+|.+..+ .++.+. .+...+...... |+||+|+.... ....-...+...+.
T Consensus 76 ~~ilv~d~~~~~----------Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a 145 (179)
T d1m7ba_ 76 AVLICFDISRPE----------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 145 (179)
T ss_dssp EEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhheeeecccCC----------CHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHH
Confidence 999999876322 122221 222223222222 89999986421 01111222333333
Q ss_pred hhcCCCcEEEEEccCCC-CHHHHHHHHHhh
Q psy17315 239 GRVGTNLKVGIVGVPNV-GKSTFFNVLTKR 267 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~-Gks~l~~~l~~~ 267 (561)
........+.+|+++|. |+..+|+.++..
T Consensus 146 ~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~ 175 (179)
T d1m7ba_ 146 KQIGAATYIECSALQSENSVRDIFHVATLA 175 (179)
T ss_dssp HHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 33344456889999998 699999988765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=8.1e-11 Score=106.60 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=88.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+||++|++++++..|..... ++.+.... ..+.. ....+.+||++|..+. ..+...+.+....++.
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~-~t~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~-~~~~~~~~~~~~~~il 82 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYD-PTIEDSYT-KQCVIDDRAARLDILDTAGQEEF-GAMREQYMRTGEGFLL 82 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCSSCC-TTCCEEEE-EEEEETTEEEEEEEEECC----C-CHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC-ccccccee-eeeeecccccccccccccccccc-cccccccccccceEEE
Confidence 479999999999999999999876554432 22222111 11112 2235789999997653 2222222222222222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+.+..+..|..+ .+.. ......|+|+|+||+|.+ ...
T Consensus 83 v~----------------d~~~~~s~~~~~~~~~~-----------------~~~~-~~~~~~p~ilvgnK~Dl~--~~~ 126 (171)
T d2erya1 83 VF----------------SVTDRGSFEEIYKFQRQ-----------------ILRV-KDRDEFPMILIGNKADLD--HQR 126 (171)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH-----------------HHHH-HTSSCCSEEEEEECTTCT--TSC
T ss_pred ee----------------ccccccchhhHHHHhHH-----------------HHhh-cccCCCCEEEEEeccchh--hhc
Confidence 11 22333444444443322 1111 112468999999999643 223
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+++.++++.. +.+++.+||++|.|++++.+...+
T Consensus 127 ~v~~~~~~~~~~~~--~~~~~e~Sak~~~~i~e~f~~l~~ 164 (171)
T d2erya1 127 QVTQEEGQQLARQL--KVTYMEASAKIRMNVDQAFHELVR 164 (171)
T ss_dssp SSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHc--CCEEEEEcCCCCcCHHHHHHHHHH
Confidence 33455666777665 678999999999999887655443
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.3e-11 Score=109.84 Aligned_cols=157 Identities=14% Similarity=0.054 Sum_probs=88.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++++++..|.....++..........+......+.+|||+|..+ ...+.....+....++..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~-~~~~~~~~~~~~d~~ilv- 82 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE-YSIFPQTYSIDINGYILV- 82 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCT-TCCCCGGGTSSCCEEEEE-
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccc-cccccchhhhhhhhhhhh-
Confidence 579999999999999999998876544333221111100011222224577899999532 111111111111111111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
-++.+.+.+..+..|... +.........|+++|+||+|. ......
T Consensus 83 ---------------~d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilvgnK~Dl--~~~r~v 127 (167)
T d1xtqa1 83 ---------------YSVTSIKSFEVIKVIHGK------------------LLDMVGKVQIPIMLVGNKKDL--HMERVI 127 (167)
T ss_dssp ---------------EETTCHHHHHHHHHHHHH------------------HHHHHCSSCCCEEEEEECTTC--GGGCCS
T ss_pred ---------------cccchhhhhhhhhhhhhh------------------hhhcccccccceeeecccccc--ccccch
Confidence 133444555555554432 111111246799999999954 322233
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..++++++++.. +.+++.+||++|.|++++.+..
T Consensus 128 ~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~l 161 (167)
T d1xtqa1 128 SYEEGKALAESW--NAAFLESSAKENQTAVDVFRRI 161 (167)
T ss_dssp CHHHHHHHHHHH--TCEEEECCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHH
Confidence 355666666665 6789999999999998875544
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=8.1e-11 Score=106.51 Aligned_cols=156 Identities=22% Similarity=0.209 Sum_probs=78.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.|.+.|.+|+|||+|+|+|++... ..++..++++ .+.. .+......+.++||+|+...- ......
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~~~ 68 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK--AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-----------QDIISQ 68 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSG-----------GGCCCH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc--ceecccCceeeccccccccccccccccccccceeeee-----------cccccc
Confidence 689999999999999999998743 2333333443 2222 233344568899999962210 000000
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCc---ccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRH---ARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~---~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
. .......++..++... .....+...+..++..+.. .++|+|+|+||+|. .+
T Consensus 69 ~----------------------~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~-~~~pviiv~NK~Dl--~~ 123 (171)
T d1mkya1 69 K----------------------MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-STVDTILVANKAEN--LR 123 (171)
T ss_dssp H----------------------HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-HTCCEEEEEESCCS--HH
T ss_pred c----------------------cccccccccccCcEEEEeeccccccccccccccccccc-ccccccccchhhhh--hh
Confidence 0 0000011111111000 0012344455554444433 68999999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
. ...+...+..+.. ..+++++||++|.|+++|.+...+.
T Consensus 124 ~--~~~~~~~~~~~~~--~~~~i~iSAk~g~gid~L~~~i~~~ 162 (171)
T d1mkya1 124 E--FEREVKPELYSLG--FGEPIPVSAEHNINLDTMLETIIKK 162 (171)
T ss_dssp H--HHHHTHHHHGGGS--SCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred h--hhhHHHHHHHhcC--CCCeEEEecCCCCCHHHHHHHHHHh
Confidence 1 1112222333222 4567999999999999886655544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=5.3e-11 Score=106.92 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=90.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
+|.+.|.+|+|||+|++++.+..+.....+.+.-..... .........+.+|||+|.++ ...+...+......++..+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER-FRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGG-GGGGHHHHHTTCSEEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcch-hccchHHHhhccceEEEee
Confidence 689999999999999999998865544333321111110 01111224577999999543 3334444433333332222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
++.+.+.+..+..+..+ +..... ...|+++|+||+| +.+....
T Consensus 81 ----------------d~~~~~s~~~i~~~~~~------------------~~~~~~-~~~~iilvgnK~D--l~~~~~~ 123 (164)
T d1yzqa1 81 ----------------DITNVNSFQQTTKWIDD------------------VRTERG-SDVIIMLVGNKTD--LADKRQV 123 (164)
T ss_dssp ----------------ETTCHHHHHTHHHHHHH------------------HHHHHT-TSSEEEEEEECTT--CGGGCCS
T ss_pred ----------------ccccccchhhhHhhHHH------------------HHHhcC-CCceEEEEecccc--hhhhhhh
Confidence 22333444444443332 111111 4689999999995 3333344
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..++..++.+.. +.+++.+||++|.|++++.+..
T Consensus 124 ~~~~~~~~~~~~--~~~~~e~SAk~g~~v~e~f~~i 157 (164)
T d1yzqa1 124 SIEEGERKAKEL--NVMFIETSAKAGYNVKQLFRRV 157 (164)
T ss_dssp CHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred hHHHHHHHHHHc--CCEEEEecCCCCcCHHHHHHHH
Confidence 556666666665 6789999999999988775443
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.6e-11 Score=106.37 Aligned_cols=157 Identities=19% Similarity=0.212 Sum_probs=91.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+||++|++++.+..|.....+.. +.......+ ......+.+|||+|..+ ...+...+.++..-++.
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL-GASFLTKKLNIGGKRVNLAIWDTAGQER-FHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC-SCEEEEEEEESSSCEEEEEEEECCCC--------CCSSTTCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccchheeeeccCCccceeeeeccCCcce-ecccchhhccCCceeEE
Confidence 478999999999999999999887655443322 211111111 11224678999999533 44443333333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +.... ....|+++|.||+|. ....
T Consensus 82 v~----------------d~~~~~Sf~~~~~~~~~------------------~~~~~-~~~~~~ilvgnK~Dl--~~~~ 124 (167)
T d1z08a1 82 VY----------------DITDEDSFQKVKNWVKE------------------LRKML-GNEICLCIVGNKIDL--EKER 124 (167)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHH-GGGSEEEEEEECGGG--GGGC
T ss_pred EE----------------eCCchhHHHhhhhhhhh------------------ccccc-ccccceeeecccccc--cccc
Confidence 22 33444555555444332 11111 146789999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....++++++++.. +.+++.+||++|.|++++.+...+
T Consensus 125 ~v~~~e~~~~a~~~--~~~~~e~Sak~~~~v~e~F~~l~~ 162 (167)
T d1z08a1 125 HVSIQEAESYAESV--GAKHYHTSAKQNKGIEELFLDLCK 162 (167)
T ss_dssp CSCHHHHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHc--CCeEEEEecCCCcCHHHHHHHHHH
Confidence 33456677777765 688999999999999887555443
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=6.1e-11 Score=106.88 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=89.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++++++..+.....+.+................+.+||++|.+... .......+....++..+
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~iiv~ 82 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-AMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH-HHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccc-cchhhhhhcccccceee
Confidence 46999999999999999999988665433332211111111111112357789999965432 22223222222221111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
...+...+..+..|+.. +.........|+++|+||+|. .. ...
T Consensus 83 ----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~-~~~ 125 (166)
T d1ctqa_ 83 ----------------AINNTKSFEDIHQYREQ------------------IKRVKDSDDVPMVLVGNKCDL--AA-RTV 125 (166)
T ss_dssp ----------------ETTCHHHHHTHHHHHHH------------------HHHHHTCSSCCEEEEEECTTC--SC-CCS
T ss_pred ----------------cccccccHHHHHHHHHH------------------HHHhcCCCCCeEEEEeccccc--cc-ccc
Confidence 22333444444444332 222222246899999999954 22 333
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
..++++++++.. +.+++.+||++|.|++++.....
T Consensus 126 ~~~~~~~~~~~~--~~~~~e~Sak~g~gi~e~f~~i~ 160 (166)
T d1ctqa_ 126 ESRQAQDLARSY--GIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp CHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHh--CCeEEEEcCCCCcCHHHHHHHHH
Confidence 445666666655 67899999999999988755443
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=6.9e-11 Score=106.95 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=85.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+....+.....++..+..-....+...+ ..+.+|||+|.+ ....+...+.+....++.
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e-~~~~~~~~~~~~~d~~i~ 85 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE-RFRSVTHAYYRDAHALLL 85 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------CCGGGCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCch-hhHHHHHHhhcCCceeEE
Confidence 57999999999999999999887665554444333221111222222 367899999943 344444443333222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+....+..+... +.... ....|+++|.||+|. ....
T Consensus 86 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~iilv~~k~d~--~~~~ 128 (170)
T d2g6ba1 86 LY----------------DVTNKASFDNIQAWLTE------------------IHEYA-QHDVALMLLGNKVDS--AHER 128 (170)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECCST--TSCC
T ss_pred Ee----------------cCCcccchhhhhhhhhh------------------hhhcc-CCCceEEEEEeeech--hhcc
Confidence 11 12222333322222111 11111 146899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.++.+.. +.+++.+||++|.|++++.+...
T Consensus 129 ~v~~~~~~~~~~~~--~~~~~e~Sak~g~gi~e~f~~l~ 165 (170)
T d2g6ba1 129 VVKREDGEKLAKEY--GLPFMETSAKTGLNVDLAFTAIA 165 (170)
T ss_dssp CSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHH
T ss_pred cccHHHHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHHH
Confidence 33345555666554 67899999999999977755443
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=4.2e-11 Score=108.49 Aligned_cols=159 Identities=15% Similarity=0.092 Sum_probs=92.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+||++|++.+.+..+.....+...-.......+......+.+||++|.++ ...+...+.++...++..+
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~llv~ 83 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE-FSAMREQYMRTGDGFLIVY 83 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG-GCSSHHHHHHHCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccc-cccchhhhhhhccEEEEec
Confidence 478999999999999999999876554433322111111111222234678999999543 3333333333333222222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
++.+.+.+..+..|..+ +.........|+|+|.||+|. ......
T Consensus 84 ----------------d~~d~~Sf~~~~~~~~~------------------i~~~~~~~~~p~ilvgnK~Dl--~~~~~v 127 (169)
T d1x1ra1 84 ----------------SVTDKASFEHVDRFHQL------------------ILRVKDRESFPMILVANKVDL--MHLRKV 127 (169)
T ss_dssp ----------------ETTCHHHHHTHHHHHHH------------------HHHHHTSSCCCEEEEEECTTC--STTCCS
T ss_pred ----------------ccccchhhhccchhhHH------------------HHhhccccCccEEEEecccch--hhhcee
Confidence 33444555555554432 111111247899999999954 332233
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhh-hhCCCCHHHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEH-QLVDMPDDERQ 442 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~-gl~~L~~~~~~ 442 (561)
..+++.++++.. +.+++.+||+++. |++++.....+
T Consensus 128 ~~e~~~~~~~~~--~~~~~e~Sak~~~~nV~~~F~~l~~ 164 (169)
T d1x1ra1 128 TRDQGKEMATKY--NIPYIETSAKDPPLNVDKTFHDLVR 164 (169)
T ss_dssp CHHHHHHHHHHH--TCCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred ehhhHHHHHHHc--CCEEEEEcCCCCCcCHHHHHHHHHH
Confidence 456677777766 6789999999875 98877554443
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.9e-11 Score=107.35 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=88.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.++|.+|+|||+|++++....+.....+....+.... .........+.+||++|.+. ...+.....+....++..
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES-FRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG-TSCCCHHHHTTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccc-hhhHHHHHhhccCEEEEE
Confidence 4689999999999999999998765544433221111000 01111224678999999532 222222222222111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.. +..... ...|+++|+||+|... ...
T Consensus 83 ~----------------d~~~~~sf~~~~~~~~~------------------~~~~~~-~~~piilv~nK~D~~~--~~~ 125 (173)
T d2a5ja1 83 Y----------------DITRRETFNHLTSWLED------------------ARQHSS-SNMVIMLIGNKSDLES--RRD 125 (173)
T ss_dssp E----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECTTCGG--GCC
T ss_pred E----------------eecChHHHHhHHHHHHH------------------HHHhCC-CCCeEEEEecCCchhh--hhh
Confidence 1 23344554444443322 111211 4689999999996432 233
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
...+...++++.. +.+++.+||++|.|++++..+..+..
T Consensus 126 ~~~~~~~~~a~~~--~~~~~e~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 126 VKREEGEAFAREH--GLIFMETSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp SCHHHHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 3445566666554 67899999999999988766555443
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.01 E-value=2e-11 Score=111.84 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=77.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCC-cccc---cCCcc-ccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDD-DVTH---VEGEV-NPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~-~v~~---~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
..|++.|.+|+|||||+|+|++...... ...+ ..|.+ +.. ..+...+..+.++|++|............ ...
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l-~~~- 83 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA-DII- 83 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT-TSC-
T ss_pred EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhh-hhc-
Confidence 4699999999999999999997531111 0000 00111 000 11223345678899999654333222211 000
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
|++..++++. .....+..+.+..... .++|+++|+||+|...
T Consensus 84 ---------------------------d~~ilv~d~~----------~g~~~~~~~~~~~~~~-~~~p~iiv~NKiD~~~ 125 (179)
T d1wb1a4 84 ---------------------------DLALIVVDAK----------EGPKTQTGEHMLILDH-FNIPIIVVITKSDNAG 125 (179)
T ss_dssp ---------------------------CEEEEEEETT----------TCSCHHHHHHHHHHHH-TTCCBCEEEECTTSSC
T ss_pred ---------------------------cccccccccc----------cccchhhhhhhhhhhh-cCCcceeccccccccC
Confidence 1110000100 1122333444433332 5799999999996422
Q ss_pred hhhccchHHHHHHHHHhcC--CCCeEEeechhhhhhhCCCCHHH
Q psy17315 399 IKKKNKWLPKIKEWVDAND--PGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~--~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+......+.+++.++..+ ++.+++||||++|.|+++|.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I 169 (179)
T d1wb1a4 126 TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLI 169 (179)
T ss_dssp HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHH
Confidence 1111111122223333221 24689999999999998885544
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=8.8e-13 Score=118.32 Aligned_cols=57 Identities=35% Similarity=0.510 Sum_probs=40.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
.+|.+.|.+|+|||+|+|+|+++.+ ..++..+|++ +... .+...+..+.++|++|+.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 60 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eEeecccccccceEeeeeeccCceeeeccccccc
Confidence 5799999999999999999998743 3333444554 2222 234455678899999964
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=3.3e-10 Score=102.71 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=86.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhc---ccHHHHHHHHHHHHHHHhhCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRL---KDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l---~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
..+|.+.|.+|+|||+|++.++...+.....+++.|. +.. ..+.. ....+.+ |||+|.++. +...+.+..
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~---~~~~~~~~~ 78 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE-DTYERTLMVDGESATIILLDMWENKGENEW---LHDHCMQVG 78 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCT-TEEEEEEEETTEEEEEEEECCTTTTHHHHH---HHHCCCCCC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceee-ecceeeeccCCceeeeeeeccccccccccc---ccccccccc
Confidence 3579999999999999999998875443333222221 111 11111 1223444 456674332 223332222
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d 397 (561)
..++..+ ++++...+..+..+... +.........|+++|+||+|.
T Consensus 79 ~~~ilvf----------------d~t~~~s~~~~~~~~~~------------------i~~~~~~~~~piilvgnK~Dl- 123 (172)
T d2g3ya1 79 DAYLIVY----------------SITDRASFEKASELRIQ------------------LRRARQTEDIPIILVGNKSDL- 123 (172)
T ss_dssp SEEEEEE----------------ETTCHHHHHHHHHHHHH------------------HHTSGGGTTSCEEEEEECTTC-
T ss_pred ceeeeee----------------cccccchhhhhhhhhhh------------------hhhccccCCceEEEEeccccc-
Confidence 2222222 23334555555444332 111111246899999999954
Q ss_pred hhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
........++.++++... +.+++.+||++|.|++++.+...++
T Consensus 124 -~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~g~~i~~~f~~l~~~ 166 (172)
T d2g3ya1 124 -VRCREVSVSEGRACAVVF--DCKFIETSAAVQHNVKELFEGIVRQ 166 (172)
T ss_dssp -GGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred -cccccccHHHHHHHHHHc--CCeEEEEeCCCCcCHHHHHHHHHHH
Confidence 332333445555555554 6789999999999998876655443
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=9.4e-11 Score=105.73 Aligned_cols=157 Identities=11% Similarity=0.121 Sum_probs=90.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.++|.+|+|||+|++++....|.....+.+.........+......+.+||++|... ...+...+.+....++..+
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~ilv~ 82 (167)
T d1c1ya_ 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ-FTAMRDLYMKNGQGFALVY 82 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS-STTHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCccc-ccccccccccccceeEEee
Confidence 468999999999999999999987655443332111111111122234578999999543 3333334433333332222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
++.+.+.+..+..|... +.........|+++|+||+|.. .....
T Consensus 83 ----------------d~~~~~sf~~~~~~~~~------------------~~~~~~~~~~p~ilvgnK~Dl~--~~~~~ 126 (167)
T d1c1ya_ 83 ----------------SITAQSTFNDLQDLREQ------------------ILRVKDTEDVPMILVGNKCDLE--DERVV 126 (167)
T ss_dssp ----------------ETTCHHHHHTHHHHHHH------------------HHHHHCCSCCCEEEEEECTTCG--GGCCS
T ss_pred ----------------eccchhhhHhHHHHHHH------------------HHHhcCCCCCeEEEEEEecCcc--ccccc
Confidence 23444555555554433 1111112467999999999643 22333
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..++..++++.. .+.+++.+||++|.|++++.+.
T Consensus 127 ~~~~~~~~~~~~-~~~~~~e~Sak~g~gv~e~F~~ 160 (167)
T d1c1ya_ 127 GKEQGQNLARQW-CNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp CHHHHHHHHHHT-TSCEEEECBTTTTBSHHHHHHH
T ss_pred chhHHHHHHHHh-CCCEEEEEcCCCCcCHHHHHHH
Confidence 344445555443 2678999999999998876443
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.5e-10 Score=104.59 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=89.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..|.....+. .+.. ... ........++.+|||+|-+ ....+...+.+....++.
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~d~~g~~-~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQEST-IGAAFLTQTVCLDDTTVKFEIWDTAGQE-RYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-SSEEEEEEEEEETTEEEEEEEEEECCSG-GGGGGHHHHHTTCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccc-cccccccceeeccceEEEEEeccCCCch-hhhhhHHHHhhCcceEEE
Confidence 37899999999999999999988655544332 2221 111 1111223468899999943 344444444333332222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..+... +.... ....|+++|.||+|. ....
T Consensus 85 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~iilvgnK~Dl--~~~~ 127 (170)
T d1r2qa_ 85 VY----------------DITNEESFARAKNWVKE------------------LQRQA-SPNIVIALSGNKADL--ANKR 127 (170)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEECGGG--GGGC
T ss_pred Ee----------------ccchhhHHHHHHHHhhh------------------hhhcc-CCCceEEeecccccc--cccc
Confidence 11 22333444433333221 11111 146899999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+..++++... +.+++.+||++|.|++++.+.
T Consensus 128 ~v~~e~~~~~~~~~--~~~~~e~SAk~g~~V~e~f~~ 162 (170)
T d1r2qa_ 128 AVDFQEAQSYADDN--SLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHH
T ss_pred cccHHHHHHHHHhc--CCEEEEeeCCCCCCHHHHHHH
Confidence 33445566666654 678999999999998777444
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=98.97 E-value=7e-11 Score=106.28 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=82.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++.+.+..+.....++ .|.. ...+...+..+.+||++|-. ........+......++..+
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T-~~~~--~~~~~~~~~~~~i~D~~G~~-~~~~~~~~~~~~~~~~i~v~ 78 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT-VGFN--MRKITKGNVTIKLWDIGGQP-RFRSMWERYCRGVSAIVYMV 78 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC-CSEE--EEEEEETTEEEEEEEECCSH-HHHTTHHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCccccc-ceee--eeeeeeeeEEEEEeeccccc-cccccccccccccchhhccc
Confidence 47899999999999999999988765444332 2221 11223344578899999943 34444444433333322211
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
++.+.+.+..+..++.. .+. ......+|+++|+||.|. .. ..
T Consensus 79 ----------------d~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~pi~lv~nK~Dl--~~--~~ 120 (164)
T d1zd9a1 79 ----------------DAADQEKIEASKNELHN-----------------LLD-KPQLQGIPVLVLGNKRDL--PG--AL 120 (164)
T ss_dssp ----------------ETTCGGGHHHHHHHHHH-----------------HHT-CGGGTTCCEEEEEECTTS--TT--CC
T ss_pred ----------------ccccccccchhhhhhhh-----------------hhh-hhcccCCcEEEEEecccc--ch--hh
Confidence 11111222222222111 111 112257899999999954 22 11
Q ss_pred hHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCC
Q psy17315 405 WLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 405 ~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~ 437 (561)
...++.+.+.. ...+.+++++||++|.|++++.
T Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~ 156 (164)
T d1zd9a1 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 156 (164)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence 12233333221 0125678999999999987653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.2e-10 Score=105.80 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=85.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..+.....+.. +.......+... ...+.+|||+|.++ +..+.....+.....+.
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~d~~g~e~-~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-GVEFATRSIQVDGKTIKAQIWDTAGQER-YRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCC-SCEEEEEEEEETTEEEEEEEEECSSGGG-TTCCCHHHHTTCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccc-cceeeeEEEEECCEEEEEEecccCCcHH-HHHHHHHHhhccCeEEE
Confidence 479999999999999999999876655443332 221111122222 24678999999432 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ...+.+.+..+..++.. +..... ...|+++|+||+|. .+..
T Consensus 83 v~----------------d~~~~~S~~~~~~~~~~------------------i~~~~~-~~~piilvgnK~Dl--~~~~ 125 (175)
T d2f9la1 83 VY----------------DIAKHLTYENVERWLKE------------------LRDHAD-SNIVIMLVGNKSDL--RHLR 125 (175)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--GGGC
T ss_pred EE----------------ECCCcccchhHHHHHHH------------------HHHhcC-CCCcEEEEEeeecc--cccc
Confidence 11 12233444433333322 222221 35799999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+....+.... +.+++.+||++|.|++++.+....+
T Consensus 126 ~~~~~~~~~~~~~~--~~~~~e~Sa~~g~~i~e~f~~l~~~ 164 (175)
T d2f9la1 126 AVPTDEARAFAEKN--NLSFIETSALDSTNVEEAFKNILTE 164 (175)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cchHHHHHHhhccc--CceEEEEecCCCcCHHHHHHHHHHH
Confidence 33333334444443 6789999999999998875554443
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=1.3e-10 Score=107.52 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=88.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+||++|++.+.+..+.....+. .++......+. .....+.+|||+|.+ .+..+...+.+....++.
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t-~~~~~~~~~i~~~~~~~~l~i~Dt~G~e-~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYIST-IGVDFKIKTVELDGKTVKLQIWDTAGQE-RFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCS-SCCCEEEEEEEETTEEEEEEEECCTTTT-TTTCCCGGGGTTCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCc-cceeEEEEEEEEeeEEEEEEEEECCCch-hhHHHHHHHhccCCEEEE
Confidence 57999999999999999999987655443333 23321111222 223468889999943 232222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +.++.+....+..+.. .+.... ....|+++|.||+|. .+..
T Consensus 85 v~----------------d~t~~~s~~~~~~~~~------------------~~~~~~-~~~~~iilv~nK~D~--~~~~ 127 (194)
T d2bcgy1 85 VY----------------DVTDQESFNGVKMWLQ------------------EIDRYA-TSTVLKLLVGNKCDL--KDKR 127 (194)
T ss_dssp EE----------------ETTCHHHHHHHHHHHH------------------HHHHHS-CTTCEEEEEEECTTC--TTTC
T ss_pred EE----------------eCcchhhhhhHhhhhh------------------hhhhcc-cCCceEEEEEecccc--cccc
Confidence 11 1122233332222111 122222 257899999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
....+....+.... +.+++.+||++|.|+.++.+...++..
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~e~SAk~g~gi~e~f~~l~~~i~ 168 (194)
T d2bcgy1 128 VVEYDVAKEFADAN--KMPFLETSALDSTNVEDAFLTMARQIK 168 (194)
T ss_dssp CSCHHHHHHHHHHT--TCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred chhHHHHhhhhhcc--CcceEEEecCcCccHHHHHHHHHHHHH
Confidence 33344445555544 678999999999999887666555443
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=98.96 E-value=1e-10 Score=109.45 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC------Cc------ccCCC-----cccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS------AA------AENFP-----FCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~------~~------~~~~~-----~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.++|+++|.+++|||||+++|+... .. ....| |+|.+.... .+.+..+.++||||.....
T Consensus 3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~- 81 (204)
T d2c78a3 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI- 81 (204)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH-
T ss_pred CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH-
Confidence 3789999999999999999996321 11 11112 667665332 2345689999999975332
Q ss_pred cccccccccccccccCCEEEEEeccc
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
......++.||++++|+|+.
T Consensus 82 ------~~~~~~~~~aD~avlVvda~ 101 (204)
T d2c78a3 82 ------KNMITGAAQMDGAILVVSAA 101 (204)
T ss_dssp ------HHHHHHHTTCSSEEEEEETT
T ss_pred ------HHHHHHHHHCCEEEEEEECC
Confidence 33467778999999999885
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=98.96 E-value=5.2e-11 Score=108.15 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=84.3
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
....+|.+.|.+|+|||+|++++.+..+. .+.+..|.. ...+...+..+.+||++|.+ .+......+.+....++
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~--~~~~~~~~~--~~~i~~~~~~~~i~d~~g~~-~~~~~~~~~~~~~~~ii 88 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS--HITPTQGFN--IKSVQSQGFKLNVWDIGGQR-KIRPYWRSYFENTDILI 88 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE--EEEEETTEE--EEEEEETTEEEEEEECSSCG-GGHHHHHHHHTTCSEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCC--cceeeeeee--EEEeccCCeeEeEeeccccc-cchhHHHHHhhccceeE
Confidence 34568999999999999999999887542 222222321 12233344578899999944 34455555544443332
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+...+..+..++.+ +........+|+++|+||+|. ..
T Consensus 89 ~v~----------------d~~d~~s~~~~~~~~~~------------------~~~~~~~~~~pillv~nK~Dl--~~- 131 (176)
T d1fzqa_ 89 YVI----------------DSADRKRFEETGQELTE------------------LLEEEKLSCVPVLIFANKQDL--LT- 131 (176)
T ss_dssp EEE----------------ETTCGGGHHHHHHHHHH------------------HTTCGGGTTCCEEEEEECTTS--TT-
T ss_pred Eee----------------ccccccchhhhhhhhhh------------------hhhhhccCCCeEEEEEEeccc--cc-
Confidence 222 11111112222222111 111122257899999999954 32
Q ss_pred ccchHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCCH
Q psy17315 402 KNKWLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 402 ~~~~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
......+.+.+.. .....+++++||++|.|++++.+
T Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~ 170 (176)
T d1fzqa_ 132 -AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170 (176)
T ss_dssp -CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 1122333333221 11145789999999999877643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=3.7e-10 Score=105.33 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=51.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
+|+++|.||||||||+|+|++.. ..+.+..+.+...... ......+.++||||...... ..+...++.+|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~~~~~~~ 75 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF------QLLDRFKSSARAV 75 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHH------HHHHHHGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccc------hhhhhhhhhcccc
Confidence 69999999999999999999876 3333323333222211 12345689999999742211 1123345788999
Q ss_pred EEEeccc
Q psy17315 176 FHLCKEK 182 (561)
Q Consensus 176 l~VvD~~ 182 (561)
++|+|++
T Consensus 76 i~v~D~~ 82 (207)
T d2fh5b1 76 VFVVDSA 82 (207)
T ss_dssp EEEEETT
T ss_pred ceEEEcc
Confidence 9999876
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=98.94 E-value=7e-11 Score=106.18 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=79.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++.+.+..+. .+.++.|.. ...+...+..+.+|||+|.++ +......+.+....+...+
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~v~ 77 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGEDVD--TISPTLGFN--IKTLEHRGFKLNIWDVGGQKS-LRSYWRNYFESTDGLIWVV 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCS--SCCCCSSEE--EEEEEETTEEEEEEEECCSHH-HHTTGGGGCTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCC--cccceEeee--eeeccccccceeeeecCcchh-hhhHHHhhhhhhhcceeee
Confidence 57999999999999999999887542 222222221 112334455789999999533 3333333322222111111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
.. .+..........+. ..+.. ....+.|+++|+||+|. .. ..
T Consensus 78 ----d~------------~d~~~~~~~~~~~~-----------------~~~~~-~~~~~~p~iiv~nK~Dl--~~--~~ 119 (165)
T d1ksha_ 78 ----DS------------ADRQRMQDCQRELQ-----------------SLLVE-ERLAGATLLIFANKQDL--PG--AL 119 (165)
T ss_dssp ----ET------------TCGGGHHHHHHHHH-----------------HHHTC-GGGTTCEEEEEEECTTS--TT--CC
T ss_pred ----ec------------ccchhHHHHHHhhh-----------------hhhhh-cccCCCceEEEEecccc--cc--cc
Confidence 10 11111111111111 11111 12257899999999954 22 11
Q ss_pred hHHHHHHHHH--h-cCCCCeEEeechhhhhhhCCCCHH
Q psy17315 405 WLPKIKEWVD--A-NDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 405 ~~~~l~~~~~--~-~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..++..+.+. . ...+.+++++||++|.|+.++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 157 (165)
T d1ksha_ 120 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDW 157 (165)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHH
Confidence 2223333221 1 112457899999999998776443
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.8e-10 Score=102.77 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=89.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+||++|++++.+..|.....+++................+.+|||+|.+.. .... .+.++...++..+
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~-~~~~-~~~~~~~~~ilv~ 80 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-IQRE-GHMRWGEGFVLVY 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC-HHHH-HHHHHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeeccccccc-ccch-hhhcccccceeec
Confidence 5789999999999999999999876554433321111000011111235789999995432 2222 2222222222222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
++.+.+.+..+..+.. .+.........|+++|+||+|.+ .....
T Consensus 81 ----------------d~~~~~s~~~~~~~~~------------------~~~~~~~~~~~piilvgnK~Dl~--~~r~V 124 (168)
T d2atva1 81 ----------------DITDRGSFEEVLPLKN------------------ILDEIKKPKNVTLILVGNKADLD--HSRQV 124 (168)
T ss_dssp ----------------ETTCHHHHHTHHHHHH------------------HHHHHHTTSCCCEEEEEECGGGG--GGCCS
T ss_pred ----------------ccCCccchhhhhhhcc------------------cccccccccCcceeeeccchhhh--hhccC
Confidence 2233344333322211 11111222478999999999543 22233
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhh-hCCCCHHHHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQ-LVDMPDDERQR 443 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~g-l~~L~~~~~~~ 443 (561)
..++.+++++.. +.+++.+||++|.| ++++..+..++
T Consensus 125 ~~~e~~~~a~~~--~~~~~e~Saktg~gnV~e~F~~l~~~ 162 (168)
T d2atva1 125 STEEGEKLATEL--ACAFYECSACTGEGNITEIFYELCRE 162 (168)
T ss_dssp CHHHHHHHHHHH--TSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHh--CCeEEEEccccCCcCHHHHHHHHHHH
Confidence 455666666665 67899999999985 88775555443
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.4e-10 Score=105.56 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=89.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..+.....+. .+..-....+. .....+.+|||+|.++ ...+...+.+....++.
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAAT-IGVDFKVKTISVDGNKAKLAIWDTAGQER-FRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-CSEEEEEEEEEETTEEEEEEEEEECSSGG-GCCSHHHHHTTCCEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccccc-eeecceeEEEEEeccccEEEEEECCCchh-hHHHHHHHHhcCCEEEE
Confidence 57999999999999999999987654443332 22211111222 2334688999999543 33333333333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+......+..++.. +.........|+++++||.|. .. .
T Consensus 86 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~i~~~~nk~d~--~~-~ 128 (177)
T d1x3sa1 86 VY----------------DVTRRDTFVKLDNWLNE------------------LETYCTRNDIVNMLVGNKIDK--EN-R 128 (177)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH------------------HTTCCSCSCCEEEEEEECTTS--SS-C
T ss_pred EE----------------ECCCccccccchhhhhh------------------hcccccccceeeEEEeecccc--cc-c
Confidence 22 12222333333333222 111122246889999999953 22 3
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....++..+++... +.+++.+||++|.|++++.+...+
T Consensus 129 ~v~~~~~~~~~~~~--~~~~~e~Sa~tg~gv~e~f~~l~~ 166 (177)
T d1x3sa1 129 EVDRNEGLKFARKH--SMLFIEASAKTCDGVQCAFEELVE 166 (177)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHC--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 33445555666655 678999999999998887554433
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.8e-10 Score=102.34 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=87.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.++|.+|+|||+|++++++..+.....+ +.+.......+... ...+.+||++|..+ ..............++.
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFH-TIGVEFLNKDLEVDGHFVTMQIWDTAGQER-FRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-GHHHHGGGGTTCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCcccc-ceeeeeeeeeeeecCceeeEeeecccCcce-ehhhhhhhhhccceEEE
Confidence 3699999999999999999998765443332 22322111112222 24567899999543 22233232222222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.....+..+..|..+ ...+.........|+++|+||+|. .+ .
T Consensus 85 ~~----------------d~~~~~s~~~~~~~~~~---------------i~~~~~~~~~~~~piilVgnK~Dl--~~-~ 130 (174)
T d1wmsa_ 85 TF----------------SVDDSQSFQNLSNWKKE---------------FIYYADVKEPESFPFVILGNKIDI--SE-R 130 (174)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH---------------HHHHHTCSCTTTSCEEEEEECTTC--SS-C
T ss_pred EE----------------eeecccccchhhhHHHH---------------HHHHhccccCCCceEEEeccccch--hh-c
Confidence 11 12222333333333222 111111121236899999999954 22 3
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+++++++.... ..+++.+||++|.|++++.+...+
T Consensus 131 ~v~~~~~~~~~~~~~-~~~~~e~Sak~~~gI~e~f~~l~~ 169 (174)
T d1wmsa_ 131 QVSTEEAQAWCRDNG-DYPYFETSAKDATNVAAAFEEAVR 169 (174)
T ss_dssp SSCHHHHHHHHHHTT-CCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHcC-CCeEEEEcCCCCcCHHHHHHHHHH
Confidence 334556667766542 467899999999999887554433
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=5.1e-10 Score=105.25 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=61.5
Q ss_pred cCCCChHHHHHHHHHHHh--cCCCc--cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-C
Q psy17315 47 GDGDGPKAPKRRKQHLSD--KLRPK--ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-A 121 (561)
Q Consensus 47 ~DL~~~~~~~~w~~~l~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~ 121 (561)
+||++++..+.|...+.. .+..+ ++++.+.+... .... . .+.+.+++|.+|||||||+|+|.+.. .
T Consensus 51 ~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~---L~~~-l-----~~kt~~~~G~SGVGKSTLiN~L~~~~~~ 121 (225)
T d1u0la2 51 MDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEE---LKEY-L-----KGKISTMAGLSGVGKSSLLNAINPGLKL 121 (225)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHH---HHHH-H-----SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred cccCCHHHHHHHHHhhcccccceeEEEeccccchhHhh---HHHH-h-----cCCeEEEECCCCCCHHHHHHhhcchhhh
Confidence 999999888887765553 33334 55555543322 1111 1 24578999999999999999998764 3
Q ss_pred cc---cCCC----cccccCccccccCCeEEEEeCCCcccCC
Q psy17315 122 AA---ENFP----FCTIDPNENNKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 122 ~~---~~~~----~~T~~~~~~~~~~~~i~l~DtpG~~~~~ 155 (561)
.+ +..- +||+.... ...+.+..++||||+....
T Consensus 122 ~T~~vs~~~~rGrHTTt~~~l-~~l~~gg~iiDTPG~r~~~ 161 (225)
T d1u0la2 122 RVSEVSEKLQRGRHTTTTAQL-LKFDFGGYVVDTPGFANLE 161 (225)
T ss_dssp C-------------CCCSCCE-EECTTSCEEESSCSSTTCC
T ss_pred hccCcccccCCCCccccceeE-EEECCCcEEEeCCcccccc
Confidence 33 3333 34444322 3455678999999997543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=1.6e-10 Score=103.97 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=84.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++++..+.....++++.+... ..+.. ...++.+|||||.++ ...+...+.+....++.
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~-~~i~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~i~ 80 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI-KTVDINGKKVKLQIWDTAGQER-FRTITTAYYRGAMGIIL 80 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEE-EEEESSSCEEEEEEECCTTGGG-TSCCCHHHHTTEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEE-EEEEECCEEEEEEEEECCCchh-hHHHHHHHHhcCCEEEE
Confidence 468999999999999999999987655544433222211 12222 234577899999432 22222222222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+....+..+.. .+.... ....|++++.||.|... .
T Consensus 81 v~----------------d~~~~~s~~~~~~~~~------------------~~~~~~-~~~~~~i~~~~k~d~~~---~ 122 (166)
T d1g16a_ 81 VY----------------DITDERTFTNIKQWFK------------------TVNEHA-NDEAQLLLVGNKSDMET---R 122 (166)
T ss_dssp EE----------------ETTCHHHHHTHHHHHH------------------HHHHHS-CTTCEEEEEEECTTCTT---C
T ss_pred EE----------------ECCCccCHHHHHhhhh------------------hhhccc-cCcceeeeecchhhhhh---h
Confidence 11 1122232222211111 111111 24678899999985422 3
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+.++++.... +.+++++||+++.|+.++.+...+.
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~e~f~~l~~~ 161 (166)
T d1g16a_ 123 VVTADQGEALAKEL--GIPFIESSAKNDDNVNEIFFTLAKL 161 (166)
T ss_dssp CSCHHHHHHHHHHH--TCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhc--CCeEEEECCCCCCCHHHHHHHHHHH
Confidence 34455666666655 6889999999999998876555443
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.7e-10 Score=104.95 Aligned_cols=160 Identities=17% Similarity=0.113 Sum_probs=87.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc--hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD--IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~--~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..|.....+.+ +.. .... +......+.+|||+|.+. +..+...+.+....++.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~D~~g~~~-~~~~~~~~~~~~~~~il 79 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FEN-YVADIEVDGKQVELALWDTAGLED-YDRLRPLSYPDTDVILM 79 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS-EEE-EEEEEEETTEEEEEEEEEECCSGG-GTTTGGGGCTTCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCce-eee-ccccccccccceeeeccccCccch-hcccchhhcccchhhhh
Confidence 368899999999999999999987654443321 111 1111 112224588999999532 33333333222222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK- 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~- 401 (561)
.+ ++.+.+.+..+..+... .+.... ...|+++|+||+|......
T Consensus 80 v~----------------d~~~~~Sf~~~~~~~~~-----------------~~~~~~--~~~piilvgnK~Dl~~~~~~ 124 (177)
T d1kmqa_ 80 CF----------------SIDSPDSLENIPEKWTP-----------------EVKHFC--PNVPIILVGNKKDLRNDEHT 124 (177)
T ss_dssp EE----------------ETTCHHHHHHHHHTHHH-----------------HHHHHS--TTSCEEEEEECGGGTTCHHH
T ss_pred hc----------------ccchhHHHHHHHHHHHH-----------------HHHHhC--CCCceEEeeecccccchhhH
Confidence 11 23333444433332211 122222 3689999999996421100
Q ss_pred ---------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 402 ---------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 402 ---------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....++.+++++.. ...+++.+||++|.|++++.+...+.
T Consensus 125 ~~~~~~~~~~~v~~~e~~~~a~~~-~~~~~~E~SAkt~~gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 125 RRELAKMKQEPVKPEEGRDMANRI-GAFGYMECSAKTKDGVREVFEMATRA 174 (177)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHc-CCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 011233444555443 13578999999999998876554443
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.7e-10 Score=104.60 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=66.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++++..+.....+.+ +..-....+... ...+.+|||+|.+ ....+...+.+....++.
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~l~i~D~~G~e-~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI-GIDFKIRTIELDGKRIKLQIWDTAGQE-RFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEECCCCC----------------CHHHHH-CEEEEEEEEEETTEEEEEEEEEC----------CCTTTTTCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCccc-cceEEEEEEEECCEEEEEEEEECCCch-hhHHHHHHhccCCCEEEE
Confidence 579999999999999999998876544433322 211011122222 2457789999943 344443333322222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+...+..+..+... +.... ....|+++|.||.|... ..
T Consensus 85 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~iilv~~k~D~~~--~~ 127 (173)
T d2fu5c1 85 VY----------------DITNEKSFDNIRNWIRN------------------IEEHA-SADVEKMILGNKCDVND--KR 127 (173)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEEC--CCS--CC
T ss_pred EE----------------ECCChhhHHHHHHHHHH------------------hhhhc-cCCceEEEEEecccchh--hc
Confidence 11 12222333333333221 21122 24689999999996432 22
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....++..+++... +.+++.+||++|.|+.++.+...+.
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~e~Sa~~g~gv~e~f~~l~~~ 166 (173)
T d2fu5c1 128 QVSKERGEKLALDY--GIKFMETSAKANINVENAFFTLARD 166 (173)
T ss_dssp CSCHHHHHHHHHHH--TCEEEECCC---CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 33344455555544 6889999999999998876555443
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=2.1e-10 Score=105.03 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=87.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+++..|.....+. .|..-....+.. ....+.+|||+|..+ ..............++.
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~i~ 80 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT-IGADFLTKEVMVDDRLVTMQIWDTAGQER-FQSLGVAFYRGADCCVL 80 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCC-CSEEEEEEEEESSSCEEEEEEEEECSSGG-GSCSCCGGGTTCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCc-cceeeeeeeeeeCCceEEEEeeecCCccc-ccccccccccCccEEEE
Confidence 46899999999999999999987655433322 222111111111 224677899999432 11111111111111100
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+ -...+.+....+..|+.+ .............|+++|+||+|. .. .
T Consensus 81 --------------~--~d~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~ip~ilv~nK~Dl--~~-~ 126 (184)
T d1vg8a_ 81 --------------V--FDVTAPNTFKTLDSWRDE---------------FLIQASPRDPENFPFVVLGNKIDL--EN-R 126 (184)
T ss_dssp --------------E--EETTCHHHHHTHHHHHHH---------------HHHHHCCSSGGGSCEEEEEECTTS--SC-C
T ss_pred --------------e--ecccchhhhhcchhhHHH---------------HHHHhccccccCCCEEEEEEeecc--cc-c
Confidence 0 012222333333333221 110111111246799999999964 22 3
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
....+...+++... .+.+++.+||++|.|+.++.+...+..++
T Consensus 127 ~~~~~~~~~~~~~~-~~~~~~e~Sak~~~gI~e~f~~l~~~i~~ 169 (184)
T d1vg8a_ 127 QVATKRAQAWCYSK-NNIPYFETSAKEAINVEQAFQTIARNALK 169 (184)
T ss_dssp CSCHHHHHHHHHHT-TSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHh-cCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence 34444555554433 26789999999999999987766555444
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=9.4e-11 Score=106.20 Aligned_cols=156 Identities=13% Similarity=0.034 Sum_probs=81.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++++++..|.....+.+.-..... .........+.+|||+|-.. ...+...+.++...++..
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~-~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK-FGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHH-HSSCGGGGTTTCCEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccc-cceecchhcccccchhhc
Confidence 3689999999999999999998876555443322111111 11111224588999999433 333333333222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+.+++.+ +.... ...|+++|+||+|.... .
T Consensus 83 ~----------------d~~~~~Sf~~~~~~~~~------------------~~~~~--~~~piilvgnK~Dl~~~---~ 123 (170)
T d1i2ma_ 83 F----------------DVTSRVTYKNVPNWHRD------------------LVRVC--ENIPIVLCGNKVDIKDR---K 123 (170)
T ss_dssp E----------------ETTSGGGGTTHHHHHHH------------------HHHHH--CSCCEEEEEECCCCSCS---C
T ss_pred c----------------ccccccccchhHHHHHH------------------Hhhcc--CCCceeeecchhhhhhh---h
Confidence 1 11212222222222221 11111 47899999999964221 1
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
..++..+++... +.+++.+||++|.|++++.+...++
T Consensus 124 -~~~~~~~~~~~~--~~~~~e~Sak~~~~v~e~f~~l~~~ 160 (170)
T d1i2ma_ 124 -VKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARK 160 (170)
T ss_dssp -CTTTSHHHHSSC--SSEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred -hhhHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 111222333333 6789999999999998886555443
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=1.7e-09 Score=96.82 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=89.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc--chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR--DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~--~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..+.....+. .+...... .+......+.+||++|...........+.+....++.
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEAT-IGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCC-CSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCcc-cccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 46899999999999999999987655443332 22221111 1222334677899998655443333333333333222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..+..+ +.........|+++|+||+|. ....
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~pi~lvgnK~Dl--~~~~ 125 (165)
T d1z06a1 82 VY----------------DMTNMASFHSLPAWIEE------------------CKQHLLANDIPRILVGNKCDL--RSAI 125 (165)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH------------------HHHHCCCSCCCEEEEEECTTC--GGGC
T ss_pred EE----------------EeehhhhhhhhhhhhHH------------------HHhhccCCCCeEEEEeccccc--hhcc
Confidence 22 23444554444333322 212222246899999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCC
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDM 436 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L 436 (561)
....++++++++.+ +.+++.+||+++.+....
T Consensus 126 ~v~~~~~~~~~~~~--~~~~~e~SAkt~~~~~~V 157 (165)
T d1z06a1 126 QVPTDLAQKFADTH--SMPLFETSAKNPNDNDHV 157 (165)
T ss_dssp CSCHHHHHHHHHHT--TCCEEECCSSSGGGGSCH
T ss_pred chhHHHHHHHHHHC--CCEEEEEecccCCcCcCH
Confidence 34456667777665 678999999998765544
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=98.87 E-value=6.2e-10 Score=102.80 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=46.1
Q ss_pred CCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 368 WSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 368 ~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
+...+.+.++.... ..+|+++|+||+|.......+...+.+++.+... ++.+++++||++|.|+++|.+..
T Consensus 119 ~~~~~~~~~~~l~~-~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~SA~~~~gi~el~~~i 189 (195)
T d1svia_ 119 PSNDDVQMYEFLKY-YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-PEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp CCHHHHHHHHHHHH-TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC-TTSEEEECCTTTCTTHHHHHHHH
T ss_pred cccccccccccccc-ccCcceechhhccccCHHHHHHHHHHHHHHhccc-CCCCEEEEeCCCCCCHHHHHHHH
Confidence 45566666665544 6899999999995421111223344454544332 46789999999999988885543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=1.1e-10 Score=104.11 Aligned_cols=153 Identities=21% Similarity=0.285 Sum_probs=82.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccc-ccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVN-PVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~d-p~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|++.|.+|+|||||+|+|++.. ...++..++++. +.. .+...+..+.+|||||+...... . ..+.....
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~---~---~~~~~~~~ 73 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND---L---VERLGIER 73 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT--BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT---T---CCCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--ceeeeccccccccceeEEEEeCCeeEEeccccccccCCcc---H---HHHHHHHH
Confidence 68999999999999999999874 333344444442 222 23344567889999996221000 0 00000001
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
++..+ ..+|++..++ + . ......++...... +...|+++++||+|. .. .
T Consensus 74 ~~~~~--------------~~ad~ii~v~----d--~----~~~~~~~~~~~~~~---~~~~~~i~~~~k~d~--~~--~ 122 (160)
T d1xzpa2 74 TLQEI--------------EKADIVLFVL----D--A----SSPLDEEDRKILER---IKNKRYLVVINKVDV--VE--K 122 (160)
T ss_dssp HHHHH--------------HHCSEEEEEE----E--T----TSCCCHHHHHHHHH---HTTSSEEEEEEECSS--CC--C
T ss_pred HHHHH--------------HhCCEEEEEE----e--C----CCCcchhhhhhhhh---cccccceeeeeeccc--cc--h
Confidence 10000 0111111111 1 0 01233444443332 247899999999954 32 2
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+.+.+.+. ++.+++++||++|.|+++|.+..
T Consensus 123 ~~~~~~~~~~~---~~~~~~~vSA~~g~gi~~L~~~I 156 (160)
T d1xzpa2 123 INEEEIKNKLG---TDRHMVKISALKGEGLEKLEESI 156 (160)
T ss_dssp CCHHHHHHHHT---CSTTEEEEEGGGTCCHHHHHHHH
T ss_pred hhhHHHHHHhC---CCCcEEEEECCCCCCHHHHHHHH
Confidence 22344444332 35789999999999998875543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.84 E-value=7.3e-10 Score=104.49 Aligned_cols=129 Identities=14% Similarity=0.056 Sum_probs=71.8
Q ss_pred ceEEEeccCCCCCCCCccccCCCcccchhhhh-cC-CCCc----cCCCChHHHHH----HHHHHHhcCCCc--ccccccc
Q psy17315 9 TLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SD-KPTW----GDGDGPKAPKR----RKQHLSDKLRPK--ADSKKKM 76 (561)
Q Consensus 9 ~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~-k~~l----~DL~~~~~~~~----w~~~l~~~~~~~--~~~~~~~ 76 (561)
++-|..+..| ......|+++..... .+ +|.| +||++....+. |.+.+..-+..+ +++..+.
T Consensus 14 ~~iV~s~~~P-------~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~ 86 (231)
T d1t9ha2 14 AVLVFSAVQP-------SFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQD 86 (231)
T ss_dssp EEEEEESTTT-------TCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHT
T ss_pred EEEEEECCCC-------CCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCChh
Confidence 4667788888 233334444222221 12 3444 99998765554 445555557666 6676666
Q ss_pred CCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-Cc---ccCCCc----ccccCccccccCCeEEEEeC
Q psy17315 77 GPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AA---AENFPF----CTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~---~~~~~~----~T~~~~~~~~~~~~i~l~Dt 148 (561)
+....... . .+.+.+++|.+|||||||+|+|.+.. .. ++..-+ ||+.... ... .+-.++||
T Consensus 87 gl~~L~~~--------l-~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l-~~~-~gg~iiDT 155 (231)
T d1t9ha2 87 SLADIIPH--------F-QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL-IHT-SGGLVADT 155 (231)
T ss_dssp TCTTTGGG--------G-TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE-EEE-TTEEEESS
T ss_pred HHHHHHHh--------h-ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE-Eec-CCCEEEEC
Confidence 65542221 1 23467899999999999999999864 33 333323 3333221 222 34679999
Q ss_pred CCcccCC
Q psy17315 149 AGLVKGA 155 (561)
Q Consensus 149 pG~~~~~ 155 (561)
||+....
T Consensus 156 PG~r~~~ 162 (231)
T d1t9ha2 156 PGFSSLE 162 (231)
T ss_dssp CSCSSCC
T ss_pred Ccccccc
Confidence 9997543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=4.6e-10 Score=102.98 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=85.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+||++|++++++..|.....+.+ +.. ....+.. ....+.+|||+|.+ ....+...+.+...-++.
T Consensus 10 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti-~~~-~~~~~~~~~~~~~l~i~D~~g~e-~~~~~~~~~~~~a~~~il 86 (185)
T d2atxa1 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDH-YAVSVTVGGKQYLLGLYDTAGQE-DYDRLRPLSYPMTDVFLI 86 (185)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS-CCC-EEEEEESSSCEEEEEEECCCCSS-SSTTTGGGGCTTCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhhCCCCCcCCCce-eee-eeEEEeeCCceEEeecccccccc-hhhhhhhhcccccceeee
Confidence 479999999999999999999887655443332 211 0111111 22357899999943 232233333222222222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh---
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI--- 399 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~--- 399 (561)
.+ ++++.+.+..+..+.. ..++... ...|+++|.||+|....
T Consensus 87 v~----------------d~t~~~Sf~~~~~~~~-----------------~~~~~~~--~~~~~ilvgnK~Dl~~~~~~ 131 (185)
T d2atxa1 87 CF----------------SVVNPASFQNVKEEWV-----------------PELKEYA--PNVPFLLIGTQIDLRDDPKT 131 (185)
T ss_dssp EE----------------ETTCHHHHHHHHHTHH-----------------HHHHHHS--TTCCEEEEEECTTSTTCHHH
T ss_pred cc----------------ccchHHHHHHHHHHHH-----------------HHHHhcC--CCCCeeEeeeccccccchhh
Confidence 11 2333344433322111 1122222 46899999999964210
Q ss_pred -------hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 -------KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 -------~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.......++..++++... ..+++.+||++|.|++++.++.
T Consensus 132 ~~~~~~~~~r~v~~~~~~~~a~~~~-~~~~~E~SAk~~~gv~e~F~~l 178 (185)
T d2atxa1 132 LARLNDMKEKPICVEQGQKLAKEIG-ACCYVECSALTQKGLKTVFDEA 178 (185)
T ss_dssp HHHHTTTTCCCCCHHHHHHHHHHHT-CSCEEECCTTTCTTHHHHHHHH
T ss_pred hhhhhhcccccccHHHHHHHHHHcC-CCEEEEecCCCCcCHHHHHHHH
Confidence 001112344445544431 3578999999999998775443
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=98.83 E-value=5.4e-10 Score=98.90 Aligned_cols=151 Identities=14% Similarity=0.047 Sum_probs=78.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+|||+|++.+++..+....... ..+. .........+.+||++|.... ......+.+....++..+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~d~~g~~~~-~~~~~~~~~~~~~~i~~~- 75 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNV---ETVEYKNISFTVWDVGGQDKI-RPLWRHYFQNTQGLIFVV- 75 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCS-SCCE---EEEECSSCEEEEEECCCCGGG-HHHHHHHTTTCSEEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccccce-eeEE---EEEeeeeEEEEEecCCCcccc-hhhhhhhhccceeEEEEE-
Confidence 6899999999999999999988654322111 1111 112223346788999996543 333333333332222211
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
.+.+.+....+..+.. +.+ ........|+++++||.|.... ..
T Consensus 76 ---------------d~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~i~~v~~k~d~~~~----~~ 118 (160)
T d1r8sa_ 76 ---------------DSNDRERVNEAREELM-----------------RML-AEDELRDAVLLVFANKQDLPNA----MN 118 (160)
T ss_dssp ---------------ETTCGGGHHHHHHHHH-----------------HHH-TCGGGTTCEEEEEEECTTSTTC----CC
T ss_pred ---------------EecChHHHHHHHHHHH-----------------HHH-HhhcccCceEEEEeeccccccc----cc
Confidence 0111111111111111 111 1122357899999999954321 11
Q ss_pred HHHHHHHH--H-hcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 406 LPKIKEWV--D-ANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 406 ~~~l~~~~--~-~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..++.... . ....+.+++++||++|.|++++.+.
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~ 155 (160)
T d1r8sa_ 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (160)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence 22222211 1 0112568999999999998887543
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.81 E-value=1.6e-09 Score=102.32 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=77.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-----------CcccCCCcccccCccc------------------------cccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-----------AAAENFPFCTIDPNEN------------------------NKVP 140 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-----------~~~~~~~~~T~~~~~~------------------------~~~~ 140 (561)
-++++++|..++|||||+++|+... ...+...|+|.+.... ....
T Consensus 9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 88 (222)
T d1zunb3 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 88 (222)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccc
Confidence 3679999999999999999996321 1123334444433221 1123
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
..+.++||||..... ......+..+|++++|||+...- .....+. -..+..++.+ +.|
T Consensus 89 ~~~~iiD~PGH~dfv-------~~~~~g~~~aD~ailVvda~~G~-------~~Qt~e~----~~~~~~~gv~~iiv~vN 150 (222)
T d1zunb3 89 RKFIIADTPGHEQYT-------RNMATGASTCDLAIILVDARYGV-------QTQTRRH----SYIASLLGIKHIVVAIN 150 (222)
T ss_dssp EEEEEEECCCSGGGH-------HHHHHHHTTCSEEEEEEETTTCS-------CHHHHHH----HHHHHHTTCCEEEEEEE
T ss_pred eEEEEEeccchhhhh-------hhhccccccCceEEEEeccccCc-------ccchHHH----HHHHHHcCCCEEEEEEE
Confidence 468999999985332 33455678899999999875211 0111111 1122333322 899
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGK 257 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gk 257 (561)
|+|+....... .....++..+..... .-+.|++||.+|.|+
T Consensus 151 K~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni 196 (222)
T d1zunb3 151 KMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNV 196 (222)
T ss_dssp CTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTT
T ss_pred ccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccC
Confidence 99998432210 011122333333322 124588999999886
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=98.81 E-value=1.1e-10 Score=106.68 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++++....+. ...++.|.. ...+...+.++.+|||+|.+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~ 72 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEVV--TTKPTIGFN--VETLSYKNLKLNVWDLGGQT 72 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE--EECSSTTCC--EEEEEETTEEEEEEEEC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccccccceE--EEEEeeCCEEEEEEeccccc
Confidence 3468999999999999999999776432 121222221 11222344578899999953
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=6e-10 Score=101.92 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=85.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++++++..|.....+.+ +.. ............+.+||++|-+ .+..+...+.+....++.
T Consensus 5 ~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti-~~~~~~~~~~~~~~~~~~~~d~~g~~-~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE-DYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCS-CCEEEEEEEETTEEEEEEEECCCCSG-GGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCcccccce-eeceeeeeeccCcceEEEeecccccc-cchhhhhhcccccceeee
Confidence 3579999999999999999999987665544332 211 1111112223457789999943 232222222222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh--
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK-- 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~-- 400 (561)
.+ ++++.+.+..+..+... .++... ...|+++|+||+|.....
T Consensus 83 v~----------------d~~~~~sf~~i~~~~~~-----------------~~~~~~--~~~piilvgnK~Dl~~~~~~ 127 (183)
T d1mh1a_ 83 CF----------------SLVSPASFENVRAKWYP-----------------EVRHHC--PNTPIILVGTKLDLRDDKDT 127 (183)
T ss_dssp EE----------------ETTCHHHHHHHHHTHHH-----------------HHHHHS--TTSCEEEEEECHHHHTCHHH
T ss_pred ee----------------ccchHHHHHHHHHHHHH-----------------HHHHhC--CCCcEEEEeecccchhhhhh
Confidence 11 23334444433321111 122221 468999999999642100
Q ss_pred --------hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 --------KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 --------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
...........+++.. ...+++.+||++|.|++++.++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~E~SAk~~~~V~e~F~~l~ 175 (183)
T d1mh1a_ 128 IEKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAI 175 (183)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHH
T ss_pred hhhhhhccccchhhHHHHHHHHHc-CCceEEEcCCCCCcCHHHHHHHHH
Confidence 0011222333344433 246889999999999987754443
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=1.5e-08 Score=92.87 Aligned_cols=163 Identities=14% Similarity=0.070 Sum_probs=96.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
.+||.++|.+|||||||+++++.......++-|... .........+.++||+|...... .+....+.++.+
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG~~~--~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~~~~ 72 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGIIE--YPFDLQSVIFRMVDVGGQRSERR-------KWIHCFENVTSI 72 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTSSCCCCCSCEE--EEEECSSCEEEEEECCCSTTGGG-------GGGGGCSSCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCceeeEEE--EEEeccceeeeeccccccccccc-------ccccccccccee
Confidence 368999999999999999999866532222222111 11122345789999999854332 234556889999
Q ss_pred EEEecccccchhh-hccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCC-------------ccHHH-H
Q psy17315 176 FHLCKEKLRNIFF-ISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKK-------------TDEGE-K 234 (561)
Q Consensus 176 l~VvD~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~-------------~~~~~-l 234 (561)
++|+|.+...... .+.......+.++.+...+.+.... ++||+|+........ .+... .
T Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
T d2bcjq2 73 MFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAR 152 (200)
T ss_dssp EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHH
T ss_pred eEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHH
Confidence 9999887544322 1223334455556565555443222 899999864432211 11111 1
Q ss_pred HHHh----hhc----CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 235 KMLL----GRV----GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 235 ~~l~----~~~----~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+. +.. .......+||++|.|+..+|+.+.+.
T Consensus 153 ~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~ 193 (200)
T d2bcjq2 153 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 193 (200)
T ss_dssp HHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHH
Confidence 1111 111 11223467999999999999888654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=9.1e-10 Score=101.45 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=86.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++++.+..|.....+.+.........+......+.+|||+|-+ .+..+...+.+...-++..+
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~~~~~~~~~~~~~ilv~ 82 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDVFLVCF 82 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-GGTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccch-hhhhhhhhcccccceeeccc
Confidence 47999999999999999999998765444332211111111111122468899999953 23333333322222221111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh----
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK---- 400 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~---- 400 (561)
++++.+.+..+..+... .+.... ...|+++|.||+|.....
T Consensus 83 ----------------d~~~~~Sf~~~~~~~~~-----------------~~~~~~--~~~~i~lvgnK~Dl~~~~~~~~ 127 (191)
T d2ngra_ 83 ----------------SVVSPSSFENVKEKWVP-----------------EITHHC--PKTPFLLVGTQIDLRDDPSTIE 127 (191)
T ss_dssp ----------------ETTCHHHHHHHHHTHHH-----------------HHHHHC--TTCCEEEEEECGGGGGCHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHH-----------------HHhhcC--CCCceEEEeccccccccchhhh
Confidence 33444555544332221 122111 478999999999642110
Q ss_pred ------hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 401 ------KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 401 ------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
......+..++++... .+.+++.+||++|.|++++.+.
T Consensus 128 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~V~e~f~~ 171 (191)
T d2ngra_ 128 KLAKNKQKPITPETAEKLARDL-KAVKYVECSALTQKGLKNVFDE 171 (191)
T ss_dssp HHHTTTCCCCCHHHHHHHHHHT-TCSCEEECCTTTCTTHHHHHHH
T ss_pred hhhhcccccccHHHHHHHHHHc-CCCeEEEEeCCCCcCHHHHHHH
Confidence 0011234444555543 2567899999999998877443
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=9.3e-10 Score=99.96 Aligned_cols=71 Identities=13% Similarity=0.063 Sum_probs=45.4
Q ss_pred CHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 369 SNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 369 ~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+...+..... ...|+++++||+|...........+.+++.+....+..+++++||++|.|+++|.+..
T Consensus 113 ~~~~~~~~~~~~~-~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i 183 (188)
T d1puia_ 113 KDLDQQMIEWAVD-SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183 (188)
T ss_dssp CHHHHHHHHHHHH-TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred hhHHHHHHHHhhh-ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHH
Confidence 3344444444433 5789999999996422111233445555555555456789999999999999885543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=98.72 E-value=1.1e-09 Score=101.48 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcC-CCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~-~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.+++++++||+|...........+.+.+++.... ...++||+||++|.|+++|.+.
T Consensus 132 ~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~ 188 (195)
T d1kk1a3 132 QKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKA 188 (195)
T ss_dssp CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred CccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHH
Confidence 4568889999954211111223444555554432 2468999999999998877443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.8e-09 Score=95.99 Aligned_cols=159 Identities=7% Similarity=0.085 Sum_probs=89.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|..|+||++|++.+.+..|... .++.+.. -.+.+.. ....+.+|||+|..+ .. +.+....++.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~f~~~--~~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~-~~-----~~~~ad~~il 76 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGSYQVL--EKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-AK-----FSGWADAVIF 76 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSCCCCC--CCSSCEE-EEEEEEETTEEEEEEEEECSSCCC-HH-----HHHHCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCc--CCcccee-EEEEeecCceEEEEEEeecccccc-cc-----cccccceeEE
Confidence 5799999999999999999999876432 2211111 1111222 224578999999532 11 2222222222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+...+..+..|... ...++.... ...|+++|.||.|.|.....
T Consensus 77 Vf----------------d~~~~~Sf~~~~~~~~~---------------i~~~~~~~~-~~~pi~lV~~k~d~d~~~~~ 124 (175)
T d2bmja1 77 VF----------------SLEDENSFQAVSRLHGQ---------------LSSLRGEGR-GGLALALVGTQDRISASSPR 124 (175)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH---------------HHHHCC--C-CCCEEEEEEECTTCCSSSCC
T ss_pred Ee----------------ecccchhhhhhHHHHHH---------------HHHHhhccc-CCccEEEEeeecCcchhhhc
Confidence 22 23444555544444322 111111111 35689999999876553322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
....++.++++... .+.+++.+||+++.|++++..+..+..+
T Consensus 125 ~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 166 (175)
T d2bmja1 125 VVGDARARALCADM-KRCSYYETCATYGLNVDRVFQEVAQKVV 166 (175)
T ss_dssp CSCHHHHHHHHHTS-TTEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHh-CCCeEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 22344555665443 2578899999999999887665555443
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=98.71 E-value=7.5e-10 Score=100.21 Aligned_cols=151 Identities=14% Similarity=0.086 Sum_probs=77.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|.+|+|||+|++++.+..+.. ..++.|.. ..........+.+||++|... .........+....++..
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~--~~~t~~~~--~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~ii~v 86 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQSVT--TIPTVGFN--VETVTYKNVKFNVWDVGGQDK-IRPLWRHYYTGTQGLIFV 86 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCCEE--EEEETTEE--EEEEEETTEEEEEEEESCCGG-GHHHHGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC--ccceeeee--EEEeeccceeeEEecCCCcch-hhhHHHhhhcccceEEEE
Confidence 4679999999999999999998764321 11111221 111222335678999999544 333333333222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +....+....+..++.. .+. ......+|+++|+||+|... .
T Consensus 87 ~----------------D~s~~~~~~~~~~~l~~-----------------~~~-~~~~~~~piiiv~NK~Dl~~----~ 128 (173)
T d1e0sa_ 87 V----------------DCADRDRIDEARQELHR-----------------IIN-DREMRDAIILIFANKQDLPD----A 128 (173)
T ss_dssp E----------------ETTCGGGHHHHHHHHHH-----------------HHT-SGGGTTCEEEEEEECTTSTT----C
T ss_pred E----------------ecccchhHHHHHHHHHH-----------------Hhh-hcccccceeeeeeecccccc----c
Confidence 1 00111112212221111 111 11124799999999995421 1
Q ss_pred chHHHHHHHHH--hcC-CCCeEEeechhhhhhhCCCC
Q psy17315 404 KWLPKIKEWVD--AND-PGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 404 ~~~~~l~~~~~--~~~-~~~~vi~iSA~~~~gl~~L~ 437 (561)
.....+.+.+. ... .+.+++++||++|.|+.++.
T Consensus 129 ~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~ 165 (173)
T d1e0sa_ 129 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 165 (173)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHH
Confidence 12223333221 111 14568899999999986653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=2.2e-09 Score=107.15 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=81.2
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhc------CC-CcccCCCcccccC--ccc-------------------------
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTK------SS-AAAENFPFCTIDP--NEN------------------------- 136 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~------~~-~~~~~~~~~T~~~--~~~------------------------- 136 (561)
....+..+|||.|.||||||||+|+|.. .+ +-+..-|.++... ..+
T Consensus 49 ~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~l 128 (327)
T d2p67a1 49 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL 128 (327)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC----
T ss_pred hccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccc
Confidence 3446678999999999999999999973 22 1111112221110 000
Q ss_pred --------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHH
Q psy17315 137 --------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKL 202 (561)
Q Consensus 137 --------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~ 202 (561)
...+..+.++.|.|... .-......+|.+++|+++.. ...++.
T Consensus 129 gg~~~~~~~~~~~~~~~g~d~iliEtvG~gq----------~e~~i~~~aD~~l~v~~P~~-------------Gd~iq~ 185 (327)
T d2p67a1 129 GGASQRARELMLLCEAAGYDVVIVETVGVGQ----------SETEVARMVDCFISLQIAGG-------------GDDLQG 185 (327)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEEEECCTT----------HHHHHHTTCSEEEEEECC-------------------CC
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEeeccccc----------cchhhhhccceEEEEecCCC-------------chhhhh
Confidence 00122345555555421 11223456789888885432 122222
Q ss_pred HHHHHHHhcch-hhccccccCcCCCCCccHHHHHHHhhhc------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 203 LETRIRDLRRS-VDAKADSKKKMGPKKTDEGEKKMLLGRV------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 203 l~~~l~~~~~~-v~NK~D~~~~~~~~~~~~~~l~~l~~~~------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.++... |.||+|......... ....+...+... +..+++.+|+.+|.|+++|.+.|.+.
T Consensus 186 ~k~gi~e~aDi~VvNKaD~~~~~~~~~-~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 186 IKKGLMEVADLIVINKDDGDNHTNVAI-ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 256 (327)
T ss_dssp CCHHHHHHCSEEEECCCCTTCHHHHHH-HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred hchhhhccccEEEEEeecccchHHHHH-HHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence 33344444444 899999874321110 011122222211 23467889999999999999999774
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=3.6e-09 Score=95.21 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=88.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++++.+..|.... .++.|. ... ..+.. ....+.+|||+|.++ ...+...+.+....++
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~-~~t~~~~~~~-~~i~~~~~~~~l~i~d~~g~~~-~~~~~~~~~~~~~~~i 80 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK-EPTIGAAFLT-QRVTINEHTVKFEIWDTAGQER-FASLAPMYYRNAQAAL 80 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEE-EEEEETTEEEEEEEEEECCSGG-GGGGHHHHHTTCSEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccc-cccccceeec-cccccccccccccccccCCchh-HHHHHHHHHhccceEE
Confidence 47899999999999999999988765443 333332 111 12222 224688999999543 3334444433333332
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh-
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK- 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~- 400 (561)
..+ ++.+.+.+..+..+..+ +.... ....|++++.||+|.....
T Consensus 81 lv~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~~~~v~nk~d~~~~~~ 125 (170)
T d1ek0a_ 81 VVY----------------DVTKPQSFIKARHWVKE------------------LHEQA-SKDIIIALVGNKIDMLQEGG 125 (170)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEECGGGGGSSC
T ss_pred EEE----------------eCCcccchhhhhhhhhh------------------hcccc-ccccceeeeecccccccccc
Confidence 222 22333444433333221 11111 1468999999999642211
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
......++.+++++.. +.+++.+||++|.|++++.+
T Consensus 126 ~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 126 ERKVAREEGEKLAEEK--GLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp CCCSCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHH
T ss_pred hhhhhHHHHHHHHHHc--CCEEEEecCCCCcCHHHHHH
Confidence 1122345556666655 67899999999999877643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=5.3e-09 Score=94.57 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=78.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh-hhHhhhcccHHHHHHHH-HHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI-INEELRLKDVEHIEKEI-NKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~-~~~el~l~Dt~Gi~~~~-~~l~~~~~~~~~~~~~ 322 (561)
.|++.|.+|+|||||+|+|+++.+. .++..++|+.+. ..... ....+..+|++|..... ................
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKIS--ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 84 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEE--ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce--eeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence 4889999999999999999987533 233333443232 22222 22345667877754321 1111111110000000
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
. +|+..++. + ...+..........+. ....|.++|+||+| ...+.
T Consensus 85 ~-------~~~~l~~~------------------d-------~~~~~~~~~~~~~~l~-~~~~~~i~v~~k~d--~~~~~ 129 (179)
T d1egaa1 85 D-------VELVIFVV------------------E-------GTRWTPDDEMVLNKLR-EGKAPVILAVNKVD--NVQEK 129 (179)
T ss_dssp C-------EEEEEEEE------------------E-------TTCCCHHHHHHHHHHH-SSSSCEEEEEESTT--TCCCH
T ss_pred h-------cceeEEEE------------------e-------cCccchhHHHHHHHhh-hccCceeeeeeeee--ccchh
Confidence 0 01111110 0 0112222222222222 25678999999994 33322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
......+....... .+.+++++||++|.||++|.+.
T Consensus 130 ~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~~L~~~ 165 (179)
T d1egaa1 130 ADLLPHLQFLASQM-NFLDIVPISAETGLNVDTIAAI 165 (179)
T ss_dssp HHHHHHHHHHHTTS-CCSEEEECCTTTTTTHHHHHHH
T ss_pred hhhhhHhhhhhhhc-CCCCEEEEeCcCCCCHHHHHHH
Confidence 33333333333333 4678999999999998776443
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.67 E-value=3.6e-09 Score=100.32 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.|++.|.+|+|||||+|.|++..
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCccHHHHHHHHHhhc
Confidence 4679999999999999999999865
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.62 E-value=3.7e-08 Score=89.72 Aligned_cols=160 Identities=11% Similarity=0.085 Sum_probs=89.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
.+||+++|..|||||||++++......+...+ |.. .......+.++||+|..... .......+.++++
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~--~~~---~~~~~~~~~i~D~~Gq~~~~-------~~~~~~~~~~~~~ 69 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV--ETH---FTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTAI 69 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE--EEE---EEETTEEEEEEEECCSGGGG-------GGGGGGCTTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCccEE--EEE---EEeeeeeeeeeccccccccc-------cchhhcccCCcee
Confidence 37899999999999999999975543221111 111 11234579999999976433 2334557899999
Q ss_pred EEEecccccchhhhccchh-hHhhhHHHHHHHHHHhcch------hhccccccCcCCC------------CCccHHH-HH
Q psy17315 176 FHLCKEKLRNIFFISLNTI-TIWRNLKLLETRIRDLRRS------VDAKADSKKKMGP------------KKTDEGE-KK 235 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~------------~~~~~~~-l~ 235 (561)
++|+|.+..+......... ...+....+...+...... ++||+|....... +...... ..
T Consensus 70 i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
T d1svsa1 70 IFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA 149 (195)
T ss_dssp EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHH
T ss_pred eeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHH
Confidence 9999887554332221111 1222223333333222111 7889887532111 1111111 11
Q ss_pred HH----hhhc-----CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 236 ML----LGRV-----GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 236 ~l----~~~~-----~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+ .... .......+||++|.|++.+|+.+.+.
T Consensus 150 ~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~ 190 (195)
T d1svsa1 150 YIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 190 (195)
T ss_dssp HHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHH
Confidence 11 1111 12234568999999999999988653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.59 E-value=5.8e-08 Score=91.84 Aligned_cols=26 Identities=4% Similarity=-0.101 Sum_probs=22.2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+.+++|+.+|.|+.+|+..|.+.
T Consensus 215 ~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 215 PPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp CCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=98.58 E-value=5.9e-09 Score=93.98 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++++.+..+. ....+.++. ...+...+.++.+||++|.+. ..............+..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~i~ 88 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HTSPTIGSN--VEEIVINNTRFLMWDIGGQES-LRSSWNTYYTNTEFVIV 88 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EEECCSCSS--CEEEEETTEEEEEEECCC-----CGGGHHHHTTCCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCC--cccccccee--EEEEeecceEEEEeccccccc-cccchhhhhccceeeee
Confidence 3478999999999999999999987542 222222221 112223445678899888533 22222222222222111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .. .+.+...... ...............|+++|+||+|...
T Consensus 89 v~----d~------------~d~~~~~~~~------------------~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---- 130 (177)
T d1zj6a1 89 VV----DS------------TDRERISVTR------------------EELYKMLAHEDLRKAGLLIFANKQDVKE---- 130 (177)
T ss_dssp EE----ET------------TCTTTHHHHH------------------HHHHHHHTSGGGTTCEEEEEEECTTSTT----
T ss_pred ec----cc------------ccccchhhhh------------------hhhhhhhhcccccceEEEEEEEcccccc----
Confidence 11 00 0001110000 0111111222235789999999995422
Q ss_pred cchHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCCH
Q psy17315 403 NKWLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 403 ~~~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.....++.+.+.. ...+.+++++||++|.|++++.+
T Consensus 131 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~ 169 (177)
T d1zj6a1 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 169 (177)
T ss_dssp CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred cCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHH
Confidence 1222333333221 11246799999999999877643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.58 E-value=5.2e-09 Score=97.51 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcC-CCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~-~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
-+|+|+++||+|.............+.+.+.... .+.|++|+||++|.|+++|.+.
T Consensus 140 i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~ 196 (205)
T d2qn6a3 140 VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEG 196 (205)
T ss_dssp CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred CceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHH
Confidence 4689999999954211111222333444444332 2478999999999999887543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=7.8e-09 Score=94.10 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=83.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..|.....+.. +.... ..+.. ....+.+||++|.+ ....+...+.+...-.+.
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~-~~~~~-~~~~~~~~~~~~~i~D~~g~~-~~~~~~~~~~~~~~~~il 79 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYT-ASFEIDTQRIELSLWDTSGSP-YYDNVRPLSYPDSDAVLI 79 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS-EEEEE-EEEECSSCEEEEEEEEECCSG-GGTTTGGGGCTTCSEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCCce-eeccc-ccccccceEEeeccccccccc-cccccccchhhhhhhhhe
Confidence 368999999999999999999987654433321 21111 11111 22457799999943 232222222222222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh--
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK-- 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~-- 400 (561)
.+ ++.+.+.+..+..+... .+.... ...|+++|.||+|.....
T Consensus 80 v~----------------d~~~~~Sf~~~~~~~~~-----------------~~~~~~--~~~~iilVgnK~Dl~~~~~~ 124 (179)
T d1m7ba_ 80 CF----------------DISRPETLDSVLKKWKG-----------------EIQEFC--PNTKMLLVGCKSDLRTDVST 124 (179)
T ss_dssp EE----------------ETTCHHHHHHHHHTHHH-----------------HHHHHC--TTCEEEEEEECGGGGGCHHH
T ss_pred ee----------------ecccCCCHHHHHHHHHH-----------------HHhccC--CcceEEEEEecccccccchh
Confidence 11 23344444443332211 122121 478999999999642100
Q ss_pred --------hccchHHHHHHHHHhcCCCCeEEeechhhhh-hhCCCCHH
Q psy17315 401 --------KKNKWLPKIKEWVDANDPGATIIPFSGVFEH-QLVDMPDD 439 (561)
Q Consensus 401 --------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~-gl~~L~~~ 439 (561)
......++..++++... ..+++.+||++|. |++++.+.
T Consensus 125 ~~~~~~~~~~~V~~~e~~~~a~~~~-~~~y~E~SAk~~~n~i~~~F~~ 171 (179)
T d1m7ba_ 125 LVELSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHV 171 (179)
T ss_dssp HHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECBTTTBHHHHHHHHHH
T ss_pred hHHHhhhhcCcchHHHHHHHHHHhC-CCeEEEEeCCCCCcCHHHHHHH
Confidence 01112344445554431 3578999999998 57766443
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=5.4e-08 Score=89.25 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=64.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
.+||.++|.+|||||||++++..... ..++-|.... ........+.++||+|...... .+....+.++.+
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f~~~-~~pTiG~~~~--~~~~~~~~~~~~D~~gq~~~~~-------~~~~~~~~~~~~ 71 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRIIHG-QDPTKGIHEY--DFEIKNVPFKMVDVGGQRSERK-------RWFECFDSVTSI 71 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHS-CCCCSSEEEE--EEEETTEEEEEEEECC--------------CTTSCTTCCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCeeeeEEE--EEeeeeeeeeeecccceeeecc-------ccccccccccee
Confidence 46899999999999999999942221 1222222211 1122345799999999864432 233456788999
Q ss_pred EEEecccccchhhhc-cchhhHhhhHHHHHHHHHHhcch------hhccccccCc
Q psy17315 176 FHLCKEKLRNIFFIS-LNTITIWRNLKLLETRIRDLRRS------VDAKADSKKK 223 (561)
Q Consensus 176 l~VvD~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~ 223 (561)
++++|.+........ ............+...+.+.... ++||+|+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 126 (200)
T d1zcba2 72 LFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE 126 (200)
T ss_dssp EEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred EEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhh
Confidence 999987643322111 11112223333333333322111 8999998643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=5.2e-09 Score=107.64 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=84.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcc--cccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDV--THVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v--~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
....|++.|.+|+|||||+|+|.+........ +.+.+|| ++..........+.+|||||+...-....
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~--------- 125 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD--------- 125 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHH---------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHH---------
Confidence 45789999999999999999999865333222 2223333 33221122234688999999853211111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
+++... .....|+++ .. ....+++.|.+++..... .++|+++|+||+|.+..
T Consensus 126 ---~~~~~~------------~~~~~d~~l------~~------~~~~~~~~d~~l~~~l~~-~~k~~~~V~nK~D~~~~ 177 (400)
T d1tq4a_ 126 ---TYLEKM------------KFYEYDFFI------II------SATRFKKNDIDIAKAISM-MKKEFYFVRTKVDSDIT 177 (400)
T ss_dssp ---HHHHHT------------TGGGCSEEE------EE------ESSCCCHHHHHHHHHHHH-TTCEEEEEECCHHHHHH
T ss_pred ---HHHHHh------------hhhcceEEE------Ee------cCCCCCHHHHHHHHHHHH-cCCCEEEEEeCcccccc
Confidence 111100 001112211 00 012456677777766554 58999999999976532
Q ss_pred hh---------ccchHHHHHHH----HHh-cCCCCeEEeechhh--hhhhCCCCHH
Q psy17315 400 KK---------KNKWLPKIKEW----VDA-NDPGATIIPFSGVF--EHQLVDMPDD 439 (561)
Q Consensus 400 ~~---------~~~~~~~l~~~----~~~-~~~~~~vi~iSA~~--~~gl~~L~~~ 439 (561)
.. .+..++.+++. +.. ..+..+++++|... ..|+..|.+.
T Consensus 178 ~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~ 233 (400)
T d1tq4a_ 178 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDK 233 (400)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred hhhhcccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHH
Confidence 11 11233444322 222 12356788888753 3355555443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.54 E-value=2.7e-08 Score=99.06 Aligned_cols=154 Identities=21% Similarity=0.215 Sum_probs=83.2
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhcC------C-CcccCCCccccc----------C---------------ccc--
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKS------S-AAAENFPFCTID----------P---------------NEN-- 136 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~~------~-~~~~~~~~~T~~----------~---------------~~~-- 136 (561)
....+..+|||.|.||||||||+++|... + +-+..-|..+.. . ..+
T Consensus 46 ~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~ 125 (323)
T d2qm8a1 46 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL 125 (323)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSH
T ss_pred hccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccc
Confidence 34456789999999999999999999742 1 111111111110 0 000
Q ss_pred --------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHH
Q psy17315 137 --------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKL 202 (561)
Q Consensus 137 --------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~ 202 (561)
...+..+.++-|.|... .+.. ...-+|..++|+.+... ..++.
T Consensus 126 gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq--------~e~~--~~~~~D~~v~v~~p~~G-------------D~iQ~ 182 (323)
T d2qm8a1 126 GGVAAKTRETMLLCEAAGFDVILVETVGVGQ--------SETA--VADLTDFFLVLMLPGAG-------------DELQG 182 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSSSS--------CHHH--HHTTSSEEEEEECSCC-------------------
T ss_pred cchhHHHHHHHHhhccCCCCeEEEeehhhhh--------hhhh--hhcccceEEEEeeccch-------------hhhhh
Confidence 01233466666666531 1111 22447888888855421 12222
Q ss_pred HHHHHHHhcch-hhccccccCcCCCCCccHHHHHHHhhh------cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 203 LETRIRDLRRS-VDAKADSKKKMGPKKTDEGEKKMLLGR------VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 203 l~~~l~~~~~~-v~NK~D~~~~~~~~~~~~~~l~~l~~~------~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.++... |.||+|..................+.. .+..+.+.+|+.+|.|++.|.++|.+.
T Consensus 183 ~k~gilE~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~ 254 (323)
T d2qm8a1 183 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 254 (323)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred hhhhHhhhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 23333444444 899999873322111011111111111 144578999999999999999999775
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.52 E-value=1.2e-08 Score=99.38 Aligned_cols=57 Identities=32% Similarity=0.458 Sum_probs=36.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
....++++|.||+|||||+|.|.++ ....++..||+|.....+ ..+..+.+.||||+
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~--~~~~~~~~pG~Tr~~~~i-~~~~~~~l~DTPGi 167 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKK--NIAKTGDRPGITTSQQWV-KVGKELELLDTPGI 167 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS--CCC------------CCE-EETTTEEEEECCCC
T ss_pred CceEEEEEecCccchhhhhhhhhcc--ceEEECCcccccccceEE-ECCCCeEEecCCCc
Confidence 4567999999999999999999998 666777888988433322 23467999999997
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=2.5e-08 Score=95.12 Aligned_cols=82 Identities=21% Similarity=0.148 Sum_probs=55.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh---cCC----------------Cc------------ccCCCcccccCccc--cccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT---KSS----------------AA------------AENFPFCTIDPNEN--NKVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~---~~~----------------~~------------~~~~~~~T~~~~~~--~~~~ 140 (561)
+..+.|+++|..++|||||+-+|+ |.- .. .....|.|.+.... .+..
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 334789999999999999999995 210 00 01123555544322 2344
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.++.++||||..... ......+..+|..++|||+.
T Consensus 84 ~~i~iiDtPGH~df~-------~~~~~g~~~~D~ailvvda~ 118 (239)
T d1f60a3 84 YQVTVIDAPGHRDFI-------KNMITGTSQADCAILIIAGG 118 (239)
T ss_dssp EEEEEEECCCCTTHH-------HHHHHSSSCCSEEEEEEECS
T ss_pred EEEEEEECCCcHHHH-------HHHHHHHHHhCEEEEEEECC
Confidence 579999999985332 33456678899999999886
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.47 E-value=3.3e-08 Score=94.65 Aligned_cols=153 Identities=13% Similarity=0.036 Sum_probs=72.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHh---cCCC----------------------------cccCCCcccccCccc--cccCCe
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLT---KSSA----------------------------AAENFPFCTIDPNEN--NKVPAF 142 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~---~~~~----------------------------~~~~~~~~T~~~~~~--~~~~~~ 142 (561)
.+.|+++|..++|||||+.+|. |.-. ......|.|.+.... ......
T Consensus 24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 103 (245)
T d1r5ba3 24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 103 (245)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence 4679999999999999999993 2110 011122333332211 123347
Q ss_pred EEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccc
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKA 218 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~ 218 (561)
+.++||||..... ......+..+|.+++|||+...-....-.......+.+ ..+..+..+ +.||+
T Consensus 104 i~~iDtPGH~df~-------~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l----~l~~~~~i~~iiv~iNKm 172 (245)
T d1r5ba3 104 FSLLDAPGHKGYV-------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA----VLARTQGINHLVVVINKM 172 (245)
T ss_dssp EEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH----HHHHHTTCSSEEEEEECT
T ss_pred eeeecccccccch-------hhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH----HHHHHcCCCeEEEEEEcC
Confidence 9999999986433 23455668899999999885321110000000111111 122222222 78999
Q ss_pred cccCcCCCCCc---cHHHHHHHhhhc-C-----CCcEEEEEccCCCCHHH
Q psy17315 219 DSKKKMGPKKT---DEGEKKMLLGRV-G-----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 219 D~~~~~~~~~~---~~~~l~~l~~~~-~-----~~~~i~isg~~~~Gks~ 259 (561)
|+......... ....++..+... . .-+.|++||++|.|+.+
T Consensus 173 D~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~ 222 (245)
T d1r5ba3 173 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 222 (245)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCccc
Confidence 99743322110 111122221111 1 12569999999999743
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=1.7e-08 Score=88.95 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=35.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
+|.+.|.+|+|||+|+|++.+..+. .+.++.++.. ......+....+||+.|.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~--~~~~t~~~~~--~~~~~~~~~~~~~~~~~~ 54 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA--TLQPTWHPTS--EELAIGNIKFTTFDLGGH 54 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--CCCCCCSCEE--EEECCTTCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--eeeceeeEeE--EEeccCCeeEEEEeeccc
Confidence 6899999999999999999998543 3333333320 112233445678888774
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.39 E-value=3.8e-07 Score=89.42 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=26.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFP 127 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~ 127 (561)
-++|++||--++|||||+|+|+|.. .+++..|
T Consensus 26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~ 58 (299)
T d2akab1 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 58 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC
T ss_pred CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc
Confidence 3579999999999999999999988 4555544
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=98.39 E-value=2.2e-08 Score=88.74 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=34.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
..+|.++|.+|+|||+|++++++..+... .++.+... .........+.+||++|.
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~ 59 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVVTT--IPTIGFNV--ETVTYKNLKFQVWDLGGL 59 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCC--CCCSSEEE--EEEEETTEEEEEEEECCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcce--ecccceee--eeeccCceEEEEeecccc
Confidence 35799999999999999999999865321 11122211 111222345667887774
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.36 E-value=2.1e-07 Score=91.75 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAEN 125 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~ 125 (561)
++|++||-.++|||||+|+|+|.. .+++.
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~ 54 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGS 54 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC--
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCCCCCCC
Confidence 579999999999999999999987 34444
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.34 E-value=4.3e-09 Score=102.98 Aligned_cols=119 Identities=27% Similarity=0.374 Sum_probs=69.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.++|+||+|||||||++++..+..+++|| +|.+|..++..+ -| .+++.+...+ .+++..+.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf--~ti~pn~gvv~v------~d-----~r~~~l~~~~--~~~~~~~a 66 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPF--CTIEPNTGVVPM------PD-----PRLDALAEIV--KPERILPT 66 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CC--CCCCCCSSEEEC------CC-----HHHHHHHHHH--CCSEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCC--CCCCCceEEEec------cc-----HhHHHHHHhc--CCCceeee
Confidence 468999999999999999999999888888888 566777654211 12 2344444443 23444333
Q ss_pred hhhhhhhhhhhhhhcc------------CCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh
Q psy17315 324 YVSEVWFSFIYLFIKN------------GHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN 380 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~------------~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~ 380 (561)
. +...|+||++.+ +||+++|++.||++++.+.+..|......+.+|.+.+....
T Consensus 67 ~---i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~~~di~~~~g~~dP~~Die~I~~EL 132 (278)
T d1jala1 67 T---MEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (278)
T ss_dssp E---EEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred e---EEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccCCCCCcCCCCCcCHHHHHHHHHHHH
Confidence 2 223578888775 56888999999988777655555444444556777666443
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.33 E-value=3.3e-08 Score=91.32 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=78.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCccccc-------------CCc-cccc-cchhhhhHhhhcccHHHHHHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV-------------EGE-VNPV-RDIEIINEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~-------------~gt-~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l 309 (561)
..|++.|..++|||||.++|++.........+. .|. ++.. ..+.+.+..+.++||||-.....
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~-- 81 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK-- 81 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH--
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH--
Confidence 468999999999999999998643222111110 011 1111 12334456789999999543222
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
.+.++... +|.+.++ +++. ..+.++..+.+.....+.-+|+|+
T Consensus 82 --~~~~~~~~-----------aD~allV--------------Vda~----------~G~~~QT~~~~~~a~~~~~~~iIv 124 (196)
T d1d2ea3 82 --NMITGTAP-----------LDGCILV--------------VAAN----------DGPMPQTREHLLLARQIGVEHVVV 124 (196)
T ss_dssp --HHHHTSSC-----------CSEEEEE--------------EETT----------TCSCHHHHHHHHHHHHTTCCCEEE
T ss_pred --HHHHHHhh-----------cCeEEEE--------------EEcC----------CCCchhHHHHHHHHHHhcCCcEEE
Confidence 22222111 1222222 1211 123334444444433334578999
Q ss_pred EecCChhhhhhhc---cchHHHHHHHHHhcC---CCCeEEeechhhhhhh
Q psy17315 390 LVNLSAKDYIKKK---NKWLPKIKEWVDAND---PGATIIPFSGVFEHQL 433 (561)
Q Consensus 390 v~NK~D~d~~~~~---~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl 433 (561)
++||+|. .... +....++++++.... ...|++++||+.|.+.
T Consensus 125 ~iNK~D~--~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~ 172 (196)
T d1d2ea3 125 YVNKADA--VQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ 172 (196)
T ss_dssp EEECGGG--CSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTT
T ss_pred EEecccc--cccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccc
Confidence 9999954 3211 112335555554331 1378999999998643
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=98.32 E-value=5.1e-07 Score=87.29 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=64.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC---Cc---c------cC------CCcccccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS---AA---A------EN------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~---~~---~------~~------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
+|+++|..++|||||+.+|.-.. .. + .+ .-|.|...... .+.+..+.++||||......
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~- 86 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI- 86 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST-
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH-
Confidence 69999999999999999995211 11 1 11 11223322211 34566899999999975543
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSK 221 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~ 221 (561)
.....++-+|..++|+|+... .. -+-..+-++......+ +.||+|..
T Consensus 87 ------e~~~~l~~~D~avlVvda~~G---------v~--~~T~~~w~~a~~~~lP~i~fINKmDr~ 136 (276)
T d2bv3a2 87 ------EVERSMRVLDGAIVVFDSSQG---------VE--PQSETVWRQAEKYKVPRIAFANKMDKT 136 (276)
T ss_dssp ------THHHHHHHCCEEEEEEETTTS---------SC--HHHHHHHHHHHTTTCCEEEEEECTTST
T ss_pred ------HHHHHHHhhhheEEeccccCC---------cc--hhHHHHHHHHHHcCCCEEEEEeccccc
Confidence 335566889999999987521 11 1111122233333333 89999997
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.30 E-value=1.1e-07 Score=85.45 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=34.8
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
.....+|.+.|.+|+|||+|++++++..+... . ++.+.. ...+...+..+.+||+.+..
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~~ 68 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-V-PTLHPT--SEELTIAGMTFTTFDLGGHI 68 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCS--CEEEEETTEEEEEEEECC--
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-e-cccccc--eeEEEecccccccccccchh
Confidence 34567899999999999999999998754321 1 111111 12233334456778887753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=5.3e-07 Score=84.54 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=70.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
..||.++|.+|||||||++++...+. .+.-|.... ........+.++|++|...... .+....+.++++
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~--~pTiG~~~~--~~~~~~~~~~~~D~~Gq~~~r~-------~w~~~~~~~~~i 74 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV--VLTSGIFET--KFQVDKVNFHMFDVGGQRDERR-------KWIQCFNDVTAI 74 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC--CCCCSCEEE--EEEETTEEEEEEECCCSTTTTT-------GGGGGCTTCSEE
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc--CCCCCeEEE--EEEECcEEEEEEecCccceecc-------chhhhcccccce
Confidence 36899999999999999999964431 122222211 1012345799999999864442 234456888999
Q ss_pred EEEecccccchhh-hccchhhHhhhHHHHHHHHHHhcch------hhcccccc
Q psy17315 176 FHLCKEKLRNIFF-ISLNTITIWRNLKLLETRIRDLRRS------VDAKADSK 221 (561)
Q Consensus 176 l~VvD~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~ 221 (561)
++|+|.+..+... .+.......+.+..+...+.+..-. ++||+|+.
T Consensus 75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence 9999987544322 2222333344444444444432211 89999987
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.27 E-value=2.7e-07 Score=86.84 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC-------------------------------cccCCCcccccCccc--cccCCe
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA-------------------------------AAENFPFCTIDPNEN--NKVPAF 142 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~-------------------------------~~~~~~~~T~~~~~~--~~~~~~ 142 (561)
.+.|+++|.-++|||||+-+|+.... ......|.|...... ......
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 82 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 82 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence 36899999999999999999952110 001122333332211 123457
Q ss_pred EEEEeCCCcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
+.++||||..... ......++-+|..++|||+.
T Consensus 83 i~iiDtPGH~df~-------~~~~~g~~~~D~allVVda~ 115 (224)
T d1jnya3 83 FTIIDAPGHRDFV-------KNMITGASQADAAILVVSAK 115 (224)
T ss_dssp EEECCCSSSTTHH-------HHHHHTSSCCSEEEEEEECS
T ss_pred eEEeeCCCcHHHH-------HHHHHHHHhhceEEEEEecc
Confidence 9999999986433 23455678899999999875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.22 E-value=1.6e-06 Score=79.80 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=40.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLV 313 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~ 313 (561)
.|.+.|.+|+|||+|++.+++..+... .+....+.....-.......+.+||++|.++........+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 68 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRF 68 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhh
Confidence 589999999999999999999865432 2221111111111112234588999999655433344443
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=98.21 E-value=7.6e-07 Score=85.75 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC---CcccC-CCcc--------------cccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS---AAAEN-FPFC--------------TIDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~---~~~~~-~~~~--------------T~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
+|+++|..++|||||+.+|.... ...+. ..|. |...... .+.+..+.++||||......
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~- 82 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG- 82 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh-
Confidence 59999999999999999995321 11100 1122 2221111 23455799999999875432
Q ss_pred ccccccccccccccCCEEEEEeccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.....++-+|..++|+|+.
T Consensus 83 ------e~~~al~~~D~avlvvda~ 101 (267)
T d2dy1a2 83 ------EIRGALEAADAALVAVSAE 101 (267)
T ss_dssp ------HHHHHHHHCSEEEEEEETT
T ss_pred ------hhhhhhcccCceEEEeecc
Confidence 3355678899999999875
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=9.5e-07 Score=81.22 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=39.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccc-cchhhhhHhhhcccHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPV-RDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~ 304 (561)
.+.|++.|.+|+|||+|+|+|++..+. ++++ +.. ..+...+..+.+|||||.++
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~-------~~tt~~~~~~~~~~~~~~~~l~D~~g~~~ 58 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-------PTVVSQEPLSAADYDGSGVTLVDFPGHVK 58 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC-------CBCCCSSCEEETTGGGSSCEEEECCCCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-------CeEEecceEEEEEeCCeEEEEEecccccc
Confidence 478999999999999999999987432 1221 121 23445566789999999654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.99 E-value=2.6e-07 Score=90.77 Aligned_cols=120 Identities=25% Similarity=0.315 Sum_probs=74.6
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhcc-CCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAF-EDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~-~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
.+...++.++|+||+|||||||++++... ..+++|+ .|++|..++. .+-| .+++.+...+. .+.
T Consensus 7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypf--tTi~pn~g~v------~v~d-----~r~~~l~~~~~--~~~ 71 (296)
T d1ni3a1 7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY--ATIDPEEAKV------AVPD-----ERFDWLCEAYK--PKS 71 (296)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS--CCCCTTEEEE------EECC-----HHHHHHHHHHC--CSE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCc--cCccCCeEEE------eccc-----cchhhhhhccc--CCc
Confidence 34567899999999999999999998753 5677877 4568876531 2223 22334443332 222
Q ss_pred ccchhhhhhhhhhhhhhhcc------------CCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKN------------GHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNK 378 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~------------~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~ 378 (561)
.... .+...|+||++.+ .+++++|++.||++++.+.+..+......+.+|.+.+..
T Consensus 72 ~~~~---~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~d~~i~~~~g~~dP~~Di~~I~~ 139 (296)
T d1ni3a1 72 RVPA---FLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVD 139 (296)
T ss_dssp EECE---EEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHH
T ss_pred eecc---cceeeeccccccccccccccHHHHHHHhhccceeEEEEeccCCCCCCCCCCCcCcchhhhhhhh
Confidence 2222 2234578888875 356778888888877766545554433334456665553
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.89 E-value=7e-06 Score=78.54 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=42.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
.....|.+.|++|+|||+|+|+|.++. ...++..+++| ++.. .+...+..+.++||||+.
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~--~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~ 91 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGER--VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 91 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSC--CSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCC--ceeecCCCCcceeEEEEEEEeccEEEEEEeeeccc
Confidence 455789999999999999999999874 33344434444 3332 234455679999999984
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=3.2e-06 Score=84.09 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcc----------------cCCCcccccCcccc------------------ccCCeE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAA----------------ENFPFCTIDPNENN------------------KVPAFL 143 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~----------------~~~~~~T~~~~~~~------------------~~~~~i 143 (561)
.|+++|..++|||||+.+|......+ ...-|.|....... .....+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 98 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 98 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence 49999999999999999995211000 00123333321110 011248
Q ss_pred EEEeCCCcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 144 NVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 144 ~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.++||||...... ....+++-+|.+++|||+.
T Consensus 99 nliDtPGh~dF~~-------ev~~al~~~D~allVVda~ 130 (341)
T d1n0ua2 99 NLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTI 130 (341)
T ss_dssp EEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETT
T ss_pred EEEcCCCcHHHHH-------HHHHHHhhcCceEEEEecc
Confidence 8999999875443 3456678899999999875
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.78 E-value=1.9e-06 Score=79.69 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..|++.|..++|||+|+++|+..
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHHH
Confidence 46899999999999999999743
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.77 E-value=1.2e-07 Score=86.17 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=41.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
.++.+.|..|+||++|++++....+... |. +...+......+.+|||+|. +.+..+...+.+.
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~~~t~------~~--~~~~~~~~~~~~~i~D~~Gq-~~~~~~~~~~~~~ 65 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIHEAGT------GI--VETHFTFKDLHFKMFDVGGQ-RSERKKWIHCFEG 65 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSCCC------SE--EEEEEEETTEEEEEEEECCS-GGGGGGGGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCc------cE--EEEEEEeeeeeeeeeccccc-cccccchhhcccC
Confidence 4789999999999999999987654322 11 11233444557889999994 3354454444433
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=6.2e-06 Score=74.72 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=41.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR 315 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~ 315 (561)
.+|.+.|..|+||++|++++....+. .+|++ |. + ...+......+.+||++|. +.+..+...+.+
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTi-G~-~-~~~~~~~~~~~~~~d~~g~-~~~~~~~~~~~~ 67 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTT-GI-I-EYPFDLQSVIFRMVDVGGQ-RSERRKWIHCFE 67 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSS--CCCCC-SC-E-EEEEECSSCEEEEEECCCS-TTGGGGGGGGCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CCcee-eE-E-EEEEeccceeeeecccccc-cccccccccccc
Confidence 47899999999999999999888653 23322 22 1 1122333456789999995 334444444433
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=97.69 E-value=2.7e-06 Score=79.62 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhhccCCceEEEecCChhhhhhhccc----hHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCH
Q psy17315 370 NADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK----WLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 370 ~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~----~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+..+.+.....+.-+.+|+++||+|. ....+. ..+++..+++... ...++|||||++|.|+.+..+
T Consensus 128 ~Qt~e~~~~~~~~gv~~iiv~vNK~D~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~~s~ 201 (222)
T d1zunb3 128 TQTRRHSYIASLLGIKHIVVAINKMDL--NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 201 (222)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECTTT--TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cchHHHHHHHHHcCCCEEEEEEEcccc--ccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCcCcc
Confidence 344444443333222558899999954 321222 2234444554431 124679999999999977643
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.64 E-value=8.1e-06 Score=75.97 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=34.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc-cCCCcccccC--C--ccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA-FEDDDVTHVE--G--EVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~-~~~~~v~~~~--g--t~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
.+....++|.+|+|||||+|+|.... ...+.++... | ||....-+.+ ...-.++||||++
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l-~~gg~iiDTPG~r 158 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF-DFGGYVVDTPGFA 158 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC-TTSCEEESSCSST
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEE-CCCcEEEeCCccc
Confidence 35688999999999999999998753 3445555432 2 2211111222 2235689999984
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.60 E-value=8e-06 Score=74.17 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=33.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
.+|.+.|..|+||++|++++. +.....|+ .|-. ...+......+.+||++|.+.
T Consensus 3 iKivllG~~~vGKTsll~r~~---f~~~~~pT-iG~~--~~~~~~~~~~~~~~D~~gq~~ 56 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR---IIHGQDPT-KGIH--EYDFEIKNVPFKMVDVGGQRS 56 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH---HHHSCCCC-SSEE--EEEEEETTEEEEEEEECC---
T ss_pred EEEEEECCCCCCHHHHHHHHh---cCCCCCCe-eeeE--EEEEeeeeeeeeeecccceee
Confidence 478999999999999999993 22222222 2321 112334455788999999643
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=3.4e-05 Score=76.10 Aligned_cols=37 Identities=27% Similarity=0.563 Sum_probs=29.1
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
+..+....+...+|.+.|.||+|||||++.+......
T Consensus 44 l~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 44 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 3344444567889999999999999999999876543
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.38 E-value=1.4e-05 Score=75.89 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=33.6
Q ss_pred CCceEEEecCChhhhhhhc----cchHHHHHHHHHhcC-----CCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKK----NKWLPKIKEWVDAND-----PGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~----~~~~~~l~~~~~~~~-----~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
-+++++++||+|....+.. ....+++..++.... ...++||+||++|.||.++.+.
T Consensus 162 i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s 226 (245)
T d1r5ba3 162 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS 226 (245)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred CCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence 3458899999965321111 122334444333221 0247999999999999998543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.38 E-value=1.6e-05 Score=78.32 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=29.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh-------------------------hhhHhhhcccHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE-------------------------IINEELRLKDVE 300 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~-------------------------~~~~el~l~Dt~ 300 (561)
.|+++|.||+|||||||+|++.....+++||++ ++|..++. ....++.++|+|
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT--~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p 79 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTT--IEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCc--ccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence 689999999999999999999988889998843 34332211 112458899999
Q ss_pred HHHHH
Q psy17315 301 HIEKE 305 (561)
Q Consensus 301 Gi~~~ 305 (561)
|+.+.
T Consensus 80 Gli~g 84 (319)
T d1wxqa1 80 GLVPG 84 (319)
T ss_dssp -----
T ss_pred Ccccc
Confidence 98543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.37 E-value=9e-05 Score=68.98 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
++.++|..|+|||||++.|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58899999999999999998654
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.19 E-value=9.1e-05 Score=68.93 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=33.3
Q ss_pred cCCceEEEecCChhhhhhhcc----chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKN----KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~----~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..+++|+++||+|....+... .....+.+++... ....+++|+||..|.|+.+..+
T Consensus 140 ~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~s~ 202 (224)
T d1jnya3 140 GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 202 (224)
T ss_dssp TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcccccc
Confidence 346788999999653211111 1223333443332 1246789999999999877643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=0.00014 Score=66.87 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
..+.-|++||.+||||||.+-.|+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999988876
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.16 E-value=0.00018 Score=65.99 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=20.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
++.-++++|.+||||||.+-.|..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999888853
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.12 E-value=0.00015 Score=66.74 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=15.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+.-|++||.|||||||.+-.|+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45568899999999999988886
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.94 E-value=0.001 Score=65.03 Aligned_cols=33 Identities=42% Similarity=0.679 Sum_probs=27.0
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+........+|.++|.+|+|||||++.+....
T Consensus 43 ~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 43 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp HHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhhhccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 333444677899999999999999999999764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00036 Score=63.94 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHh
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~ 117 (561)
+.-+++||.+||||||.+-.|.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999999886
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00025 Score=66.59 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCceEEEecCChhhhhhhc--cchHHHHHHHHHhcCC---CCeEEeechhhhhhhCCCC
Q psy17315 384 AKTQIYLVNLSAKDYIKKK--NKWLPKIKEWVDANDP---GATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~--~~~~~~l~~~~~~~~~---~~~vi~iSA~~~~gl~~L~ 437 (561)
-+++|+++||+|....+.. ....+++.+++..... ..+++|+||..|.|+.+..
T Consensus 144 v~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~s 202 (239)
T d1f60a3 144 VRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 202 (239)
T ss_dssp CCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceecc
Confidence 3568889999964321110 1223444455443311 2568999999999987764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.82 E-value=0.00045 Score=63.24 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCHHHHHHHHh
Q psy17315 98 KVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~ 117 (561)
-++++|.+||||||.+-.|.
T Consensus 12 vi~lvGp~GvGKTTTiaKLA 31 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLA 31 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999999886
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=96.79 E-value=0.00044 Score=66.13 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=34.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCccccc-CCc-c-c--cc------------cchhhhhHhhhcccHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV-EGE-V-N--PV------------RDIEIINEELRLKDVEHI 302 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~-~gt-~-d--p~------------~~~~~~~~el~l~Dt~Gi 302 (561)
.|+++|..++||++|..+|.-..=.......+ .|+ + | |. ..+++.+..+.++||||.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~ 81 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGH 81 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCch
Confidence 59999999999999999997542111111000 011 1 1 11 124456678999999995
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=96.68 E-value=0.003 Score=59.85 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.|++.|..++||++|...|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 5899999999999999999643
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0013 Score=62.85 Aligned_cols=57 Identities=26% Similarity=0.172 Sum_probs=39.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC--CcccC-CCcccccCcccc-----ccCCeEEEEeCCCcccC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS--AAAEN-FPFCTIDPNENN-----KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~--~~~~~-~~~~T~~~~~~~-----~~~~~i~l~DtpG~~~~ 154 (561)
-|+++|...+|||||+|.|.+.. ..+++ .-.+|+....+. .....+.++||.|+...
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~ 98 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 98 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence 68899999999999999999876 23322 233555533221 12346999999999753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.51 E-value=2.8e-05 Score=72.38 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=36.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
..+|.+.|..|+||++|++++....+. ++.|-. ...+...+..+.+||++|.+
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~-----pTiG~~--~~~~~~~~~~~~~~D~~Gq~ 58 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVV-----LTSGIF--ETKFQVDKVNFHMFDVGGQR 58 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCC-----CCCSCE--EEEEEETTEEEEEEECCCST
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCcC-----CCCCeE--EEEEEECcEEEEEEecCccc
Confidence 467999999999999999999665331 222321 12233445678899999943
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=96.44 E-value=0.00058 Score=59.99 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
|||+|+|.||+|||||++.+++.-
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l 24 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhcC
Confidence 689999999999999999998743
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0031 Score=58.06 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.4
Q ss_pred EEEEEcCCCCHHHHHHHHhcC
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~ 119 (561)
..|.|+.|+|||||+|.|...
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 567899999999999999754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.99 E-value=0.0015 Score=58.82 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
|.-|.++|+||+||||+.++|+..
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999853
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0015 Score=56.61 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~ 118 (561)
-++|+|+||+|||||+|.|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999975
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.73 E-value=0.0027 Score=55.11 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+++++|.+.|.|||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.57 E-value=0.0023 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..+|+|+|.||+|||||.++|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.51 E-value=0.0025 Score=55.40 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=18.3
Q ss_pred EEEEEcCCCCHHHHHHHHhc
Q psy17315 99 VGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~ 118 (561)
++|+|++|+|||||++.|..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 58999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.33 E-value=0.0032 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
++|.++|.||+||||+.+.|...
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999743
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.20 E-value=0.0053 Score=54.18 Aligned_cols=39 Identities=26% Similarity=0.206 Sum_probs=28.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNE 135 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~ 135 (561)
.-|.++|.+|||||||++.|.... ......+.||+.+..
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~ 42 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 42 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCc
Confidence 347899999999999999998654 222334567766544
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.14 E-value=0.0056 Score=52.99 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
...++.|.++|+||+||||+-++|...
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999999999743
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.0057 Score=55.44 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=35.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCccccccCCeEEEEeC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
+.-+.++|.+|||||||++.|..... .....+.||+.+..+...+....+++-
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~ 57 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 57 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecH
Confidence 44588999999999999999986541 223457788876654333333444443
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.011 Score=57.78 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..|+++|.-+.||++|.+.|...
T Consensus 18 RNI~iiGhvd~GKTTL~d~Ll~~ 40 (341)
T d1n0ua2 18 RNMSVIAHVDHGKSTLTDSLVQR 40 (341)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHH
T ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Confidence 45999999999999999999753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.77 E-value=0.0068 Score=53.82 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=27.8
Q ss_pred EEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccc
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNEN 136 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~ 136 (561)
|.|+|.+||||+||.+.|.... .-....+.||+-+..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~ 43 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG 43 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCC
Confidence 7899999999999999998654 2233446667655443
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.0079 Score=53.14 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNEN 136 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~ 136 (561)
-|.++|.+|+|||||++.|.... .-....+.||+.+..+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~ 45 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 45 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCc
Confidence 38999999999999999998654 2223456667665443
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.54 E-value=0.0092 Score=52.82 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.||+|.++|.||+||||+...|...
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999743
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.49 E-value=0.011 Score=52.74 Aligned_cols=26 Identities=35% Similarity=0.518 Sum_probs=23.0
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
..+.|+|.++|.||+||||+-..|+.
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999984
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.41 E-value=0.01 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
++++|.++|.||+||||+...|+.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999974
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.01 Score=55.18 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-+++|+|.+|+|||||++.|.|--
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999999854
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.31 E-value=0.012 Score=55.06 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++|||.+|+|||||++.|.|-.
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhccc
Confidence 345689999999999999999999754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.31 E-value=0.009 Score=50.47 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.0
Q ss_pred EEEEEcCCCCHHHHHHHHhc
Q psy17315 99 VGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~ 118 (561)
|.++|.||+|||||.+.|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.30 E-value=0.0097 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
|+|.|+|.||+||||+...|+.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.17 E-value=0.0095 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|..|+|||||++.|+|.-
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhccc
Confidence 34468999999999999999999854
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.17 E-value=0.012 Score=51.27 Aligned_cols=22 Identities=41% Similarity=0.872 Sum_probs=18.3
Q ss_pred cEEE-EEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVG-IVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~-ivG~pnvGKStlin~L~~ 118 (561)
||+. |.|.|||||||+.+.|..
T Consensus 1 mkiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 4554 569999999999999974
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=94.16 E-value=0.011 Score=54.83 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++|+|.+|+|||||++.|.|-.
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345689999999999999999999764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.02 E-value=0.022 Score=49.89 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=22.8
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
....++-|||.|.+|+|||||.+.|..
T Consensus 18 ~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 18 KTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344567799999999999999999974
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.99 E-value=0.012 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
|+|.++|.||+||||+...|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.96 E-value=0.016 Score=55.12 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++|+|.+|+|||||++.|+|--
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345679999999999999999999854
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.014 Score=54.55 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++|||.+|+|||||++.|.|-.
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 345689999999999999999999764
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.91 E-value=0.012 Score=50.39 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~ 119 (561)
-|.+.|.||+||||+.+.|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.90 E-value=0.018 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.++..|.++|.||+||||+...|+.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999974
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.84 E-value=0.012 Score=50.92 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
++|.++|+|||||||+-+.|..
T Consensus 2 p~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999973
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=93.75 E-value=0.013 Score=54.46 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+--++++|..|+|||||++.|+|-.
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999999865
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.017 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
|+|.++|.||+||||+...|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.013 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+--++++|.+|+|||||++.|+|-.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34569999999999999999999865
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.70 E-value=0.013 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~ 118 (561)
-|+|.|.|||||||+.+.|..
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999974
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.70 E-value=0.013 Score=52.11 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=28.6
Q ss_pred EEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccc
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNEN 136 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~ 136 (561)
|.|+|.+|||||||.+.|.... .-....+.||+.+..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~ 42 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPG 42 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCC
Confidence 7899999999999999997654 2234567777766543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=93.68 E-value=0.016 Score=53.56 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+--+|++|..|+|||||+|.|+|-.
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.011 Score=54.59 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+--++++|..|+|||||++.|+|-
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4456999999999999999999984
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.027 Score=52.95 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=45.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccc---ccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGN---AFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~---~~l~~i~~~D 173 (561)
-.+.+||.||||||+++..|...-.. +..|. ......++-+|+..++.+......+.. ..+..+...+
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~~-~~vp~--------~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~ 110 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIVQ-GDVPE--------VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT 110 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH-TCSCG--------GGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSS
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHHh-CCccc--------ccccceeEEeeechHhccCccchhHHHHHHHHHHHhhccC
Confidence 46899999999999999999864321 11121 122346888899888866543222222 2345556667
Q ss_pred EEEEEecc
Q psy17315 174 AIFHLCKE 181 (561)
Q Consensus 174 ~il~VvD~ 181 (561)
-+++++|.
T Consensus 111 ~iIlfiDe 118 (268)
T d1r6bx2 111 NSILFIDE 118 (268)
T ss_dssp CEEEEETT
T ss_pred CceEEecc
Confidence 66677753
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.33 E-value=0.019 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
|+|.++|.||+||||+...|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.31 E-value=0.021 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~ 119 (561)
-|.+.|.||+||||+.+.|...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.30 E-value=0.021 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCcchhhHhccCCC
Confidence 44579999999999999999998754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.30 E-value=0.024 Score=49.58 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+.+.-|.++|.||+||||+...|..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999864
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.28 E-value=0.04 Score=50.48 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=34.7
Q ss_pred cCCceEEEecCChhhhhhhc--cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKK--NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~--~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.+.|.++|+||+| +..+. ...++.+.+..... +++++.+||+++.|+++|.+.
T Consensus 40 ~~i~pvIvlnK~D--L~~~~~~~~~~~~~~~~y~~~--g~~v~~~Sa~~~~gl~~L~~~ 94 (231)
T d1t9ha2 40 NDIQPIICITKMD--LIEDQDTEDTIQAYAEDYRNI--GYDVYLTSSKDQDSLADIIPH 94 (231)
T ss_dssp TTCEEEEEEECGG--GCCCHHHHHHHHHHHHHHHHH--TCCEEECCHHHHTTCTTTGGG
T ss_pred cCCCEEEEEeccc--ccccHHHHHHHHHHHHHHhhc--cccceeeecCChhHHHHHHHh
Confidence 5788999999994 44211 11222222222222 688999999999999999654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.24 E-value=0.022 Score=52.59 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34569999999999999999999865
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.14 E-value=0.018 Score=53.85 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
+--++++|..|+|||||++.|+|..
T Consensus 30 Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 30 GDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3468999999999999999999864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.022 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.|+|.++|.||+||||+...|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999974
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.022 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+--++++|.+|+|||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34569999999999999999999754
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=93.02 E-value=0.02 Score=52.97 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
+=.++++|.+|+|||||++.|+|-.
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4469999999999999999999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=93.00 E-value=0.014 Score=53.65 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+--++++|.+|+|||||++.|.|-.
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34469999999999999999999865
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.00 E-value=0.016 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++|+|.+|+|||||++.|.|-.
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 355689999999999999999998754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.012 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+++.|.++|+||+||||+-+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467888999999999999999974
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.92 E-value=0.021 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~ 120 (561)
-++++|..|+|||||++.|+|-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999865
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.87 E-value=0.2 Score=47.08 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.-+.++++|..++|||+|+|+|++..+
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCc
Confidence 346799999999999999999999864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.023 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~ 119 (561)
.|.++|.|||||||+-..|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.74 E-value=0.059 Score=48.37 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=41.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
+..+.++|.+|+||++|.+.|.+..+.......++-||.|.+.-+..+....|++-.-+
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F 60 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEF 60 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHH
Confidence 46789999999999999999999865333333344567676655555566777775544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.55 E-value=0.024 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~ 118 (561)
+|.++|+|||||||+-..|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.52 E-value=0.025 Score=48.47 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.6
Q ss_pred EEEEEcCCCCHHHHHHHHhcC
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~ 119 (561)
|.+.|.||+||||+.++|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 667799999999999999864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.024 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~ 119 (561)
.|.|.|.||+|||||+.++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999753
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.031 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~ 118 (561)
|+.|.|+|.||+||||+...|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999974
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=92.15 E-value=0.037 Score=51.74 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|..|+|||||+++|.|-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 44579999999999999999999754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.00 E-value=0.033 Score=47.65 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~ 118 (561)
=+.++|.||+||||+.++|..
T Consensus 8 iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999974
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.52 E-value=0.054 Score=47.57 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.|+-|||.|.+|+||||+.+.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999964
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.38 E-value=0.028 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 44579999999999999999999864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.04 E-value=0.042 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~ 118 (561)
.|.++|.|||||||+-+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999973
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.96 E-value=0.048 Score=48.05 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..+++-|+|-|..||||||+++.|...
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999999999753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.68 E-value=0.056 Score=48.66 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
..++-|-+.|+||+|||||-+.|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999999974
|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=0.012 Score=42.28 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=42.9
Q ss_pred ceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 477 EVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 477 ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
.++. ++.|+|+.|+|..||+++.+..+.|+| -| +....+|.+++++.|+|
T Consensus 10 ~~~~--~~~g~T~~diA~~I~~~l~k~avaa~v-----------------ng--~l~dL~~~l~~d~~vei 59 (62)
T d1tkea1 10 SQRH--YDHAVSPMDVALDIGPGLAKACIAGRV-----------------NG--ELVDACDLIENDAQLSI 59 (62)
T ss_dssp CEEE--CSSCBCHHHHHHHHCHHHHHHCCEEEE-----------------TT--EEEETTCCBCSCEEEEE
T ss_pred CEEE--cCCCCCHHHHHHHHCchhhheEEEEEE-----------------CC--EEeCCCcCcCCCCEEEE
Confidence 4444 789999999999999999999999993 23 67789999999999987
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.068 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
|+-|||.|.+|+|||||.+.|...
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999743
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.09 E-value=0.089 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
.-|.++|.||+||||+...|..
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999974
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=89.66 E-value=0.081 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..|.|.|.+|+||||++|+|.+.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEeeccccchHHHHHHhhh
Confidence 35899999999999999999854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.13 E-value=0.083 Score=48.61 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.-|.+.|.||+|||||..+|.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=0.092 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
.-|.++|.||+||||+...|+.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999975
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=88.55 E-value=0.11 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+.+.|.||+||||+.+++++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999853
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.27 E-value=0.14 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
|-|+|-|..||||||+++.|..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999974
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.58 E-value=0.22 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~ 118 (561)
...|.+.|.||+|||++.++|.+
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHhh
Confidence 35699999999999999999975
|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: TGS-like family: TGS domain domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain species: Staphylococcus aureus [TaxId: 1280]
Probab=86.29 E-value=0.028 Score=39.89 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=40.4
Q ss_pred cccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 481 WTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 481 ~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
-.+++|+|+.|+|..||+.+.+..+.|+| -| ....-+|.+++++-|+|
T Consensus 11 ~~~~~g~T~~diA~~I~~~l~k~avaa~v-----------------Ng--~~~dL~~~l~~d~~vei 58 (59)
T d1nyra2 11 KAFDKGTTTEDIAQSISPGLRKKAVAGKF-----------------NG--QLVDLTKPLETDGSIEI 58 (59)
T ss_dssp CBCCTTCCHHHHHHTTCHHHHHHCCEEEE-----------------TT--EEECTTSCCCSCBCCCE
T ss_pred EEcCCCCCHHHHHHHHChhhhheEEEEEE-----------------CC--EEccCCcCcCCCCEEEE
Confidence 35678999999999999999999999994 23 56778888998887765
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.99 E-value=0.19 Score=49.54 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~ 156 (561)
-.+.+||.||||||+|+..|...-.. +..|- ...+..++-+|...++.+..
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~~i~~-~~vp~--------~l~~~~i~~ld~~~l~ag~~ 94 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQRIVK-GDVPE--------GLKGKRIVSLQMGSLLAGAK 94 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHH-TCSCT--------TSTTCEEEEECC--------
T ss_pred CCCeEECCCCCCHHHHHHHHHHHHHh-CCCCH--------HHcCceEEEeeHhhhhcccC
Confidence 34789999999999999988754211 11121 12245688899988886553
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.73 E-value=0.19 Score=45.71 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+..+.+.|.||+||||+.++|...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999753
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.25 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=19.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+.=|+|-|..||||||+++.|..
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45588889999999999998864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.49 E-value=0.21 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+-|||.|.+|+||||+.+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 45899999999999999998643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=85.46 E-value=0.24 Score=47.06 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+.++-|||.|.++|||||+-+.|..
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 35678999999999999999999863
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.14 E-value=0.48 Score=40.93 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=34.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKD 298 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~D 298 (561)
..|.++|.+|+||++|++.|.+..+.. -...++-||.|.|.-+..+....|++
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~-~~~~v~~TTR~~R~~E~~G~dY~Fvs 56 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHTTRPPKKDEENGKNYYFVS 56 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEECSCC---CCBTTTBEECC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcC-eeeccccccCCCCCccccCccceeee
Confidence 468999999999999999999874322 11123345666665555555666666
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.11 E-value=0.23 Score=44.15 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+.|+|-|.|||||||+-..|...
T Consensus 3 ~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 3 TIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 367888999999999999999743
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.92 E-value=0.52 Score=40.54 Aligned_cols=56 Identities=23% Similarity=0.178 Sum_probs=35.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEH 301 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~G 301 (561)
+..|.++|.+|+||++|.+.|.+..+.. ...++-||.+.+.-+..+....+++-.-
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~--~~~~~~tTR~~r~~e~~G~dy~fvs~~~ 57 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL--HFSVSATTRAPRPGEVDGVDYHFIDPTR 57 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC--EECCCEESSCCCTTCCBTTTBEECCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCCC--eEEEEeeccCCCccccCCcceeeccchh
Confidence 3568899999999999999999885421 1122344555554344444556666333
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.92 E-value=0.26 Score=43.54 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~ 156 (561)
-.+.+||.||||||+++..|...-.. +..|. ......++-+|+..++.+..
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri~~-~~vp~--------~L~~~~i~~ld~~~LiAg~~ 94 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRIIN-GEVPE--------GLKGRRVLALDMGALVAGAK 94 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH-TCSCG--------GGTTCEEEEECHHHHHTTTC
T ss_pred CCeEEEecCCcccHHHHHHHHHHHHh-CCCCH--------HHcCceEEEeeHHHHhccCC
Confidence 46899999999999999999854311 11221 12245688999988886554
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=84.74 E-value=0.51 Score=43.77 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=23.4
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+..+....+.+.|.|+.|||+++++|...
T Consensus 99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~~ 127 (267)
T d1u0ja_ 99 KKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445567899999999999999999854
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.53 E-value=0.24 Score=45.14 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~ 118 (561)
-+.|.|.+|+|||||++.+..
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 478999999999999998864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.46 E-value=0.55 Score=41.92 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+.+.|.||+||||++.++...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.42 E-value=0.28 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+.+.|.||+||||+..+|++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999998643
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.29 E-value=0.3 Score=43.18 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
.=|++-|.+||||||+++.|..
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3488889999999999999974
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.17 E-value=0.2 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+.+.|.||+||||+.++|...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhc
Confidence 4889999999999999999753
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=83.66 E-value=0.32 Score=43.10 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=21.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+..-.+.+.|.||+|||++.++|..-
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 44467999999999999999999743
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=83.43 E-value=0.33 Score=42.90 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
+-|||.|.+|+||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998863
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.94 E-value=0.27 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.-+.++|.||||||.|.++|++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 45899999999999999999853
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=82.93 E-value=0.31 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
.-+.+.|.||+|||++.+++..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 4589999999999999999984
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.76 E-value=0.36 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.023 Sum_probs=20.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
..++=|||-|.+|+|||||.+.|.
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHHH
Confidence 456789999999999999998775
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=82.00 E-value=0.39 Score=44.03 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+.-+.+.|.||+|||+|.++|.+
T Consensus 42 ~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHH
Confidence 34589999999999999999985
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.96 E-value=0.16 Score=46.63 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.1
Q ss_pred EEEEcCCCCHHHHHHHHhcC
Q psy17315 100 GIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 100 ~ivG~pnvGKStlin~L~~~ 119 (561)
.+.|.||+||||+++++...
T Consensus 50 ~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHH
T ss_pred EeECCCCCCHHHHHHHHHHH
Confidence 44599999999999999854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=81.68 E-value=0.37 Score=42.48 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+-|+|.|.||+||||+-..|...
T Consensus 4 piI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45888899999999999999754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.68 E-value=0.57 Score=40.54 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=35.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
.|.++|.+|+||++|.+.|.+..+.. ....++-|+.|.+.-+..+....+++-..+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~~-~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f 58 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPDS-FGFSVSSTTRTPRAGEVNGKDYNFVSVDEF 58 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTT-EEECCEEECSCCCTTCCBTTTEEECCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCcc-eeEEEeeccCCCCCCCcCCccceeccHHHH
Confidence 48899999999999999999875331 111223445555543444445566664443
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.56 E-value=0.5 Score=43.46 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+.-+.+.|.||+|||++.+++.+.
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHHH
Confidence 345899999999999999999853
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=81.20 E-value=0.63 Score=41.30 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=23.1
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
+....+--+.|.|.||+|||+|...++-.-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334455678899999999999998887443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=81.19 E-value=0.47 Score=39.65 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=22.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.++|.+|+||+||.+.|.+..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.78 E-value=0.28 Score=44.04 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..|+|-|..||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=80.51 E-value=1.8 Score=39.18 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=25.3
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+..+..+++.|.+|+|||+|++.+.+-..
T Consensus 26 i~~Ge~~~liG~sGaGKSTll~~i~gl~~ 54 (240)
T d1g2912 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 45678899999999999999999998753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=80.18 E-value=0.11 Score=44.84 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=17.0
Q ss_pred EEEEEcCCCCHHHHHHHHh
Q psy17315 99 VGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~ 117 (561)
.+|+|..|+|||||+.||.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3578999999999999996
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.11 E-value=0.36 Score=39.08 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+.++++.|-+-|++|+|||||-|+|..
T Consensus 2 r~kqgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 2 RPKQGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp GGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred CCccceEEEEeCCCCCCHHHHHHHHHH
Confidence 345788999999999999999999963
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.09 E-value=0.56 Score=41.81 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+.+.|.||+||||++.+++..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 4789999999999999999754
|