Psyllid ID: psy17322

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
KKTIPPLTRDLNARAESEACRILFRLPAICLFLSPSKKTIPPLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKKLSQSSISSSTSSETAEQIQGPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKST
ccccccccccccccccHHHHHHHHHcHHHHHcccccccccccccccHHHHHHcHHHHHHccccccccccEEEEEEEEcccccccccEEEEccccEEEEEEcccccEEEEEEcccEEEEcccccccccccEEEEEcHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHccHHHHHcccHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHcccccccc
ccccccHHHHHcHHccHHHHHHHHHccccccccccccccccHHHHcHHHHHHHHHHHHHEcccccccccccEEEEEEEcccccccccEEEEcccEEEEEccccccEEEEEEcHEEEEEEEccccccccccEEEEccHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHEccccccc
kktippltrdlNARAESEACRILFRLPaiclflspskktippltrdLNARAESEACRILfrlpatekldgsiaaqlytpynrsqvngrmFISQNYICFDSKIENLVSVViplrdvqtIYQVDKDMESKSVEIvlhpkqyfgcdattTYVFIVEKDAKRLrekklsqssissstssetaEQIQgpllnlfkpdvgietrskeEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVqnerpnsnlslscDEIERDLhrslpehpafqcEIGINALRRVLTAYaaknpqigycqaMNIVTSVFLIYTSEQEAFWLLVCLCesllpdyyntkVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKST
kktippltrdlnarAESEACRILFRLPAICLflspskktipplTRDLNARAESEACRILFRLPATEKLDGSIAAQlytpynrsqvnGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEivlhpkqyfgcdatTTYVFIVEKDAKrlrekklsqssissstssetaeqiqgpllnlfkpdVGIETrskeevknkqwelhfnrykrgvsmyrTAEMTNLIlrgvpdakrrEIWLTCSGALNEMLRDPDLYAAMRRRvqnerpnsnlslsCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKST
KKTIPPLTRDLNARAESEACRILFRLPAICLFLSPSKKTIPPLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKKLsqssissstssetaeqiQGPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKST
*****************EACRILFRLPAICLFLSPSKKTIPPLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIVLHPKQYFGCDATTTYVFIVEK*******************************LNLFKPDVGI********KNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAA******************************EHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLD****
******LTRDLNARAESEACRILFRLPA*******************NARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQ*****************LHPKQYFGCDATTTY**I******************************************************KQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQ*********LSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKS*
KKTIPPLTRDLNARAESEACRILFRLPAICLFLSPSKKTIPPLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRL*********************IQGPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKST
****PPLTRDLNARAESEACRILFRLPAICLFLSPSKKTIPPLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKK*******************GPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDV***
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KKTIPPLTRDLNARAESEACRILFRLPAICLFLSPSKKTIPPLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKKLSQSSISSSTSSETAEQIQGPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
Q66K14 1250 TBC1 domain family member yes N/A 0.886 0.293 0.458 4e-96
Q5SVR0 1263 TBC1 domain family member yes N/A 0.886 0.290 0.457 1e-93
Q3UYK3 1264 TBC1 domain family member no N/A 0.859 0.281 0.427 3e-92
Q6ZT07 1266 TBC1 domain family member no N/A 0.869 0.284 0.425 6e-92
Q0IIM8 1120 TBC1 domain family member no N/A 0.862 0.318 0.425 6e-80
A3KGB4 1114 TBC1 domain family member no N/A 0.864 0.321 0.414 2e-79
O95759 1140 TBC1 domain family member no N/A 0.857 0.311 0.395 2e-77
Q9Z1A9 1134 TBC1 domain family member no N/A 0.862 0.314 0.400 7e-75
B0R0W9 1108 TBC1 domain family member no N/A 0.855 0.319 0.397 1e-72
C8VDQ4 1120 Putative GTPase-activatin yes N/A 0.492 0.182 0.428 1e-43
>sp|Q66K14|TBC9B_HUMAN TBC1 domain family member 9B OS=Homo sapiens GN=TBC1D9B PE=1 SV=3 Back     alignment and function desciption
 Score =  352 bits (902), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 189/412 (45%), Positives = 253/412 (61%), Gaps = 45/412 (10%)

Query: 38  KTIPPLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYIC 97
           + I  L RDL+ARA++E  R  FRLP  E+LDG  +  L+TP+N+  + G+MFIS NYIC
Sbjct: 272 RNISALKRDLDARAKNECYRATFRLPRDERLDGHTSCTLWTPFNKLHIPGQMFISNNYIC 331

Query: 98  FDSKIENLVSVVIPLRDVQTIYQVD-KDMESKSVEIVLHPKQYFGCDATTTYVFIVEKDA 156
           F SK E+   ++IPLR+V  + + D   +    + I    K  F         F+V++ +
Sbjct: 332 FASKEEDACHLIIPLREVTIVEKADSSSVLPSPLSISTKSKMTFLFANLKDRDFLVQRIS 391

Query: 157 KRLREKKLSQ--------------SSISSSTSSETAEQIQGP------------------ 184
             L++    Q              S+ SS    E +EQ   P                  
Sbjct: 392 DFLQKTPSKQPGSIGSRKASVVDPSTESSPAPQEGSEQPASPASPLSSRQSFCAQEAPTA 451

Query: 185 ---LLNLFKPDVGIE----TRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPD 237
              LL LF+ +  +E      +KE++K + W +HF  Y RGV MYRTA+   L+L+G+P+
Sbjct: 452 SQGLLKLFQKNSPMEDLGAKGAKEKMKEESWHIHFFEYGRGVCMYRTAKTRALVLKGIPE 511

Query: 238 AKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPA 297
           + R E+WL  SGA NEM+  P  YA +      E+     SL+ +EIERDLHRS+PEHPA
Sbjct: 512 SLRGELWLLFSGAWNEMVTHPGYYAELV-----EKSTGKYSLATEEIERDLHRSMPEHPA 566

Query: 298 FQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPD 357
           FQ E+GI ALRRVLTAYA +NP IGYCQAMNIVTSV L+Y SE+EAFWLLV LCE +LPD
Sbjct: 567 FQNELGIAALRRVLTAYAFRNPTIGYCQAMNIVTSVLLLYGSEEEAFWLLVALCERMLPD 626

Query: 358 YYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSL 409
           YYNT+VVGALVDQG+  +L  ++LP L EK+Q++G+I  ISLSWFLT+FLS+
Sbjct: 627 YYNTRVVGALVDQGIFEELTRDFLPQLSEKMQDLGVISSISLSWFLTLFLSV 678
May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)
>sp|Q5SVR0|TBC9B_MOUSE TBC1 domain family member 9B OS=Mus musculus GN=Tbc1d9b PE=2 SV=1 Back     alignment and function description
>sp|Q3UYK3|TBCD9_MOUSE TBC1 domain family member 9 OS=Mus musculus GN=Tbc1d9 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9 OS=Homo sapiens GN=TBC1D9 PE=2 SV=2 Back     alignment and function description
>sp|Q0IIM8|TBC8B_HUMAN TBC1 domain family member 8B OS=Homo sapiens GN=TBC1D8B PE=1 SV=2 Back     alignment and function description
>sp|A3KGB4|TBC8B_MOUSE TBC1 domain family member 8B OS=Mus musculus GN=Tbc1d8b PE=2 SV=1 Back     alignment and function description
>sp|O95759|TBCD8_HUMAN TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2 Back     alignment and function description
>sp|B0R0W9|TBC8B_DANRE TBC1 domain family member 8B OS=Danio rerio GN=tbc1d8b PE=4 SV=1 Back     alignment and function description
>sp|C8VDQ4|GYP2_EMENI Putative GTPase-activating protein AN11010 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN11010 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
383865432 1135 PREDICTED: TBC1 domain family member 9 [ 0.867 0.316 0.532 1e-108
350411895 1135 PREDICTED: TBC1 domain family member 9-l 0.867 0.316 0.524 1e-107
340711337 1135 PREDICTED: TBC1 domain family member 9-l 0.867 0.316 0.521 1e-106
328780155 1137 PREDICTED: TBC1 domain family member 9 [ 0.893 0.325 0.511 1e-106
380030305 1137 PREDICTED: TBC1 domain family member 9 [ 0.893 0.325 0.508 1e-105
189240719 879 PREDICTED: similar to TBC1 domain family 0.862 0.406 0.509 1e-103
322795815 1022 hypothetical protein SINV_13218 [Solenop 0.869 0.352 0.524 1e-103
345493777 1128 PREDICTED: TBC1 domain family member 9 [ 0.874 0.320 0.505 1e-103
307195776 1138 TBC1 domain family member 9 [Harpegnatho 0.871 0.317 0.509 1e-101
307180731 949 TBC1 domain family member 9 [Camponotus 0.871 0.380 0.514 1e-101
>gi|383865432|ref|XP_003708177.1| PREDICTED: TBC1 domain family member 9 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/387 (53%), Positives = 266/387 (68%), Gaps = 28/387 (7%)

Query: 43  LTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKI 102
           L RDL+ARA SEA ++ FRLP  EKLDGSI A L+TPYN+  V G++F+SQNY+CF+S++
Sbjct: 279 LKRDLDARAHSEAYKLQFRLPGIEKLDGSIDATLWTPYNKRYVWGKIFLSQNYMCFESRV 338

Query: 103 ENLVSVVIPLRDVQTIYQVDKDMESKSVE---IVLHPKQYFGCDATTTYVFIVEKDAKRL 159
             LVS+VIPLR+V+ I   +    S  ++   +V   +  F         F+V+K ++ L
Sbjct: 339 RRLVSLVIPLREVRLIEPAENQSSSTGIDKSILVTTARSSFLFAQIHDRDFVVQKISELL 398

Query: 160 REKKLSQSSIS---------SSTSSETAEQIQG-----PLLNLFKPDVGIETRSKEEVKN 205
            + KLS S+ S         + ++SE A+  Q      PL+ LFK  +  E   K+E K 
Sbjct: 399 AKSKLSMSTDSIFFQNNPHQNDSNSEQAKSAQSWKPQPPLMTLFKAPLSNEAALKQEAKE 458

Query: 206 KQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMR 265
           KQWELHF  Y RGV+MYRT E   LI++GVP A R E+WLT SGALNEM+ +P LY ++ 
Sbjct: 459 KQWELHFGEYGRGVTMYRTTETAKLIIQGVPQALRGEVWLTFSGALNEMVMNPGLYKSLV 518

Query: 266 RRVQNERPNSNLSLSC---DEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIG 322
                   + +L  SC   +EIERDLHRSLPEHPAFQ + GI+ALRRVL+AYA KNPQIG
Sbjct: 519 --------DQSLGKSCQANEEIERDLHRSLPEHPAFQSDTGISALRRVLSAYAWKNPQIG 570

Query: 323 YCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLP 382
           YCQAMNIV SV LIY SE+ AFW L  +CESLLPDYY+ +VVGALVDQG++ +L  EYLP
Sbjct: 571 YCQAMNIVASVLLIYCSEESAFWQLCNVCESLLPDYYDRRVVGALVDQGLLEELAAEYLP 630

Query: 383 NLHEKLQNMGMIRMISLSWFLTIFLSL 409
            LH +LQ +G+I++ISLSWFLTIFLS+
Sbjct: 631 TLHARLQELGLIKVISLSWFLTIFLSV 657

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350411895|ref|XP_003489483.1| PREDICTED: TBC1 domain family member 9-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340711337|ref|XP_003394233.1| PREDICTED: TBC1 domain family member 9-like isoform 1 [Bombus terrestris] gi|340711339|ref|XP_003394234.1| PREDICTED: TBC1 domain family member 9-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|328780155|ref|XP_394426.4| PREDICTED: TBC1 domain family member 9 [Apis mellifera] Back     alignment and taxonomy information
>gi|380030305|ref|XP_003698790.1| PREDICTED: TBC1 domain family member 9 [Apis florea] Back     alignment and taxonomy information
>gi|189240719|ref|XP_974316.2| PREDICTED: similar to TBC1 domain family, member 9 (with GRAM domain), partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|322795815|gb|EFZ18494.1| hypothetical protein SINV_13218 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|345493777|ref|XP_001600394.2| PREDICTED: TBC1 domain family member 9 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307195776|gb|EFN77590.1| TBC1 domain family member 9 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307180731|gb|EFN68621.1| TBC1 domain family member 9 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
UNIPROTKB|J9NWX2 1092 TBC1D9B "Uncharacterized prote 0.536 0.203 0.586 7.9e-87
UNIPROTKB|Q66K14 1250 TBC1D9B "TBC1 domain family me 0.533 0.176 0.592 1.1e-86
UNIPROTKB|F1NI67 1269 TBC1D9 "Uncharacterized protei 0.497 0.162 0.592 2e-86
UNIPROTKB|F1P659 1220 TBC1D9B "Uncharacterized prote 0.536 0.181 0.586 2.5e-86
UNIPROTKB|F1LN89 1207 Tbc1d9b "Protein Tbc1d9b" [Rat 0.533 0.183 0.587 5e-86
UNIPROTKB|F1S448 1251 TBC1D9B "Uncharacterized prote 0.533 0.176 0.583 5.2e-86
RGD|1310147 1224 Tbc1d9b "TBC1 domain family, m 0.533 0.180 0.587 5.6e-86
MGI|MGI:1918560 1264 Tbc1d9 "TBC1 domain family, me 0.497 0.162 0.578 1.4e-85
UNIPROTKB|F1MS54 1255 TBC1D9B "Uncharacterized prote 0.536 0.176 0.573 1.5e-85
MGI|MGI:1924045 1263 Tbc1d9b "TBC1 domain family, m 0.533 0.174 0.583 1.5e-85
UNIPROTKB|J9NWX2 TBC1D9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 687 (246.9 bits), Expect = 7.9e-87, Sum P(2) = 7.9e-87
 Identities = 136/232 (58%), Positives = 174/232 (75%)

Query:   182 QGPLLNLFKPDVGIE---TR-SKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPD 237
             QG LL LF+ +  +E    R +KE++K + W +HF  Y RGV MYRTA+   L+L+G+P+
Sbjct:   447 QG-LLKLFQGNSPMEDLGARGAKEKMKEESWNIHFFEYGRGVCMYRTAKTRELVLKGIPE 505

Query:   238 AKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPA 297
             + R E+WL  SGA NEM+  P  YA +      E+     SL+ +EIERDLHRS+PEHPA
Sbjct:   506 SLRGELWLLFSGAWNEMVTHPGYYANLV-----EKSTGKYSLATEEIERDLHRSMPEHPA 560

Query:   298 FQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPD 357
             FQ E+GI ALRRVLTAYA +NP IGYCQAMNIVTSV L+Y +E+EAFWLLV LCE +LPD
Sbjct:   561 FQNELGIAALRRVLTAYAFRNPTIGYCQAMNIVTSVLLLYGNEEEAFWLLVALCERMLPD 620

Query:   358 YYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSL 409
             YYNT+VVGALVDQG+  +L  ++LP L EK+Q++G+I  ISLSWFLT+FLS+
Sbjct:   621 YYNTRVVGALVDQGIFEELTRDFLPQLSEKMQDLGVISSISLSWFLTLFLSV 672
GO:0005622 "intracellular" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA
UNIPROTKB|Q66K14 TBC1D9B "TBC1 domain family member 9B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NI67 TBC1D9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P659 TBC1D9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LN89 Tbc1d9b "Protein Tbc1d9b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1S448 TBC1D9B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1310147 Tbc1d9b "TBC1 domain family, member 9B (with GRAM domain)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1918560 Tbc1d9 "TBC1 domain family, member 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MS54 TBC1D9B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1924045 Tbc1d9b "TBC1 domain family, member 9B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-41
COG5210 496 COG5210, COG5210, GTPase-activating protein [Gener 1e-36
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-35
cd13354114 cd13354, PH-GRAM2_TCB1D9_TCB1D9B, TBC1 domain fami 3e-28
cd13353132 cd13353, PH-GRAM2_TBC1D8, TBC1 domain family membe 1e-17
cd1321896 cd13218, PH-GRAM2_TCB1D8_TCB1D9_family, TCB1D8 and 2e-15
pfam0289360 pfam02893, GRAM, GRAM domain 7e-10
cd1335293 cd13352, PH-GRAM2_TBC1D8B, TBC1 domain family memb 1e-09
smart0056860 smart00568, GRAM, domain in glucosyltransferases, 2e-07
cd13220111 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr 3e-07
cd13216117 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 1e-05
cd1057094 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran 2e-04
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  145 bits (367), Expect = 2e-41
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 237 DAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHP 296
           D+ R E+W    G L+E  +   +    +     + P+        +IE+D+ R+ P H 
Sbjct: 1   DSLRGEVWKLLLGNLSESKQRDSVSQYSKLLKLEDSPDEE------QIEKDVPRTFPHHF 54

Query: 297 AFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT-SEQEAFWLLVCLCESLL 355
            F+   G   LRR+L AY+  NP +GYCQ MN + +  L+    E+EAFW  V L E LL
Sbjct: 55  FFKNGEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLL 114

Query: 356 PDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLS 408
            D++     G   D  V  +L++++ P L++ LQ +G+   + +  WFLT+F  
Sbjct: 115 RDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFAR 168

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|241508 cd13354, PH-GRAM2_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|241507 cd13353, PH-GRAM2_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|241372 cd13218, PH-GRAM2_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|217271 pfam02893, GRAM, GRAM domain Back     alignment and domain information
>gnl|CDD|241506 cd13352, PH-GRAM2_TBC1D8B, TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
KOG4347|consensus 671 100.0
KOG2058|consensus 436 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
COG5210 496 GTPase-activating protein [General function predic 100.0
KOG2222|consensus 848 99.97
KOG2223|consensus586 99.96
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.96
KOG2221|consensus267 99.95
KOG4567|consensus370 99.93
KOG1092|consensus484 99.91
KOG4436|consensus 948 99.91
KOG2224|consensus 781 99.86
KOG1093|consensus 725 99.86
KOG1102|consensus397 99.86
KOG2197|consensus 488 99.75
KOG2595|consensus 395 99.71
PF0289369 GRAM: GRAM domain; InterPro: IPR004182 The GRAM do 99.66
KOG4436|consensus 948 99.62
KOG1091|consensus 625 99.53
smart0056861 GRAM domain in glucosyltransferases, myotubularins 99.5
KOG1032|consensus 590 99.39
KOG3636|consensus 669 98.69
KOG2801|consensus 559 97.98
KOG1648|consensus813 97.23
PF14844106 PH_BEACH: PH domain associated with Beige/BEACH; P 96.43
PF1447096 bPH_3: Bacterial PH domain 95.33
PF1160589 Vps36_ESCRT-II: Vacuolar protein sorting protein 3 90.04
cd01201108 Neurobeachin Neurobeachin Pleckstrin homology-like 86.89
PF11696642 DUF3292: Protein of unknown function (DUF3292); In 80.61
>KOG4347|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.9e-63  Score=501.88  Aligned_cols=351  Identities=41%  Similarity=0.664  Sum_probs=322.6

Q ss_pred             ccccchhcccHHHHhhcCCCCCCccceeEEEEEEccccccccceeEeeccceeEeeecCCCeeEEEEecccccccceeec
Q psy17322         44 TRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDK  123 (414)
Q Consensus        44 ~~~l~~~~~~~~f~~~F~lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek  123 (414)
                      ||++++|.++++| .+|+||  |+|+++..|.+|.||++.+.+|+||+|+||+||.|...+.|++++|+.+|+   +|||
T Consensus         1 krdl~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c~~~~Pl~~vr---~ve~   74 (671)
T KOG4347|consen    1 KRDLDARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLCSFITPLLAVR---SVER   74 (671)
T ss_pred             Ccchhhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccceEeeehhhhh---hhhc
Confidence            6899999999999 999999  999999999999999999999999999999999999999999999999999   8888


Q ss_pred             cCC----CCcEEEEEccCcccccCcceEEEecccchHHHHHHHHhhC------CC-------CCCCC--------C-Ccc
Q psy17322        124 DME----SKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKKLSQ------SS-------ISSST--------S-SET  177 (414)
Q Consensus       124 ~~~----~~~i~i~t~~~~~~~~~~~~~~~f~~~~~rd~~~~~l~~~------~~-------~~~~~--------~-~~~  177 (414)
                      .+.    ++.|.+.|.        +...+.|.++.+|+.+...+..-      .+       .++.|        + .++
T Consensus        75 ~~~ss~~~~~i~~~~~--------~~~~~~f~~~~~r~~~~~k~~~~~~~~~~~~~~e~a~~~~~~Se~~~~~a~~~~~~  146 (671)
T KOG4347|consen   75 LDDSSLFTQLISLFTS--------NMVGMRFGGLTERLKLLSKLHLPPAREEVESAREAAKYDTLSSEEFSEQALPSEEA  146 (671)
T ss_pred             cCccccchhhhHHhhc--------CcceEEecchhhHHHHHHHHhchHhhhhccchhhhhhcchhhhhhhhhhccCCccc
Confidence            874    788999999        69999999999999888777731      11       01111        0 112


Q ss_pred             cccCCcccccccCCCCCccccchhhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcC
Q psy17322        178 AEQIQGPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRD  257 (414)
Q Consensus       178 ~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~  257 (414)
                      ......+++..++++.++.. .++..|++.|+++|.++|+++.+++..+++++++.|+|++.|+++|..++|+...+..+
T Consensus       147 ~~~~~~~~~~~~~~~~d~~~-lre~~k~k~W~~~f~~~G~~~~~~qt~~~~Klv~~gipe~~rgeiW~l~sGav~~~l~~  225 (671)
T KOG4347|consen  147 SGESALGFGEKGKYKIDPRA-LREWAKEKFWKKYFIKDGPNMNQIQTILLRKLLYNGFPEDPRGEIWYLASGAVASLLLN  225 (671)
T ss_pred             cccchhcccccCCCCCChHH-HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhcCCChHHHHHHhhhHHHHHhhcC
Confidence            22345677888888877765 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhc
Q psy17322        258 PDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIY  337 (414)
Q Consensus       258 ~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~  337 (414)
                      +++|.++   +.+..+..+.  +.++|++|++|+.|+|+.||.+.|+..|+|||.||++.||+|||||.||.+++.+|++
T Consensus       226 ~Geygkl---l~~~~G~~~~--a~eEIE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~  300 (671)
T KOG4347|consen  226 PGEYGKL---LHSVTGKRSV--ATEEIEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLF  300 (671)
T ss_pred             cHHhhhh---hhcccCCccc--ccccccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhh
Confidence            9999999   9888888777  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCCchHhhHHHHHHhcCCCCCCCC
Q psy17322        338 TSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKST  414 (414)
Q Consensus       338 ~~Ee~aFw~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i~~~~~~~WfltLF~~~lP~dT  414 (414)
                      +.||+|||++++++++++|+||+..+.|...+|.+|+.|++.++|.|++|+..+|+..++.++||+|+|...+|.++
T Consensus       301 ~~EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~~l~~Vsl~WFlslFls~m~le~  377 (671)
T KOG4347|consen  301 CKEEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLGQLSTVSLSWFLSLFLSLMPLEY  377 (671)
T ss_pred             hccchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhcccceEeeHHHHHHHHHHcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999874

>KOG2058|consensus Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2222|consensus Back     alignment and domain information
>KOG2223|consensus Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2221|consensus Back     alignment and domain information
>KOG4567|consensus Back     alignment and domain information
>KOG1092|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>KOG1093|consensus Back     alignment and domain information
>KOG1102|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG2595|consensus Back     alignment and domain information
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG1091|consensus Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>KOG1032|consensus Back     alignment and domain information
>KOG3636|consensus Back     alignment and domain information
>KOG2801|consensus Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes Back     alignment and domain information
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain Back     alignment and domain information
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
3hzj_A 310 Crystal Structure Of The Rabgap Domain Of The Rabga 3e-14
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 8e-13
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 9e-13
1fkm_A 396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-04
2g77_A 410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 2e-04
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 7e-04
4hlq_A305 Crystal Structure Of Human Rab1b Bound To Gdp And B 8e-04
3dzx_A 346 Crystal Structure Of The Rabgap Domain Of Human Tbc 8e-04
4hl4_A292 Crystal Structure Of The Human Tbc1d20 Rabgap Domai 8e-04
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure 
Iteration: 1

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 223 RTAEMTNLILRGVPDAKRREIWLTCSGAL-NEMLRDPDLYAAMRRRVQNERPNSNLSLSC 281
           R   ++ L+  GVP+A R E+W   +G   N+   D       R R+   + ++  S+  
Sbjct: 22  RPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAXLD-------RYRILITKDSAQESV-- 72
Query: 282 DEIERDLHRSLPEHPAFQ--CEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTS 339
             I RD+HR+ P H  F+     G  +L ++  AY+  +  IGYCQ  + + +V L++  
Sbjct: 73  --ITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHXP 130
Query: 340 EQEAFWLLVCLC-ESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMI 397
           E++AF +LV +  +  L D Y             +  L +E LP+LH    ++ +     
Sbjct: 131 EEQAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXY 190
Query: 398 SLSWFLTIF 406
           +  WFLT+F
Sbjct: 191 ASQWFLTLF 199
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|4HLQ|A Chain A, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens Length = 305 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|4HL4|A Chain A, Crystal Structure Of The Human Tbc1d20 Rabgap Domain Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 1e-69
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-63
2qq8_A334 TBC1 domain family member 14; structural genomics 5e-57
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-30
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 1e-26
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
 Score =  222 bits (567), Expect = 1e-69
 Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 6/217 (2%)

Query: 196 ETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEML 255
           E     +     WE   +   R    +   +M + + +GVP   R EIW   +   +   
Sbjct: 21  EITPCLKEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKH 80

Query: 256 RDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTA 313
           + P         V  +     L+     I  DL R+ P HP F  +   G  +L  +L A
Sbjct: 81  QFPSKQQPKD--VPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKA 138

Query: 314 YAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESL-LPDYYNTKVVGALVDQGV 372
           Y+  + ++GYCQ ++ V  + L++ SE+EAF +L  L   + L   Y   ++   +    
Sbjct: 139 YSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQ 198

Query: 373 MNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLS 408
           ++ L+ +Y  +L+  L+   +   + +  WFLT+F S
Sbjct: 199 LSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFAS 235
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.91
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 94.18
1pfj_A108 TFIIH basal transcription factor complex P62 subun 91.47
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 90.62
1zsq_A 528 Myotubularin-related protein 2; protein-phospholip 90.2
1lw3_A 657 Myotubularin-related protein 2; protein-phosphate 88.67
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
Probab=100.00  E-value=2.5e-41  Score=334.98  Aligned_cols=204  Identities=25%  Similarity=0.421  Sum_probs=183.2

Q ss_pred             hhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhh-------hcChhHHHHHHHHHHhhCC
Q psy17322        201 EEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEM-------LRDPDLYAAMRRRVQNERP  273 (414)
Q Consensus       201 e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~-------~~~~~~Y~~l~~~l~~~~~  273 (414)
                      ...+.++|.+++.++|+.+...+.+++++++++|||+.+|+.||+.++|+....       ...++.|.++   +...  
T Consensus        26 ~~e~~~~W~~~l~~~~~~~~~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l---~~~~--  100 (331)
T 3qye_A           26 LKEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKEL---LKQL--  100 (331)
T ss_dssp             CHHHHHHHHHHHTCTTGGGCCCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHH---TTSC--
T ss_pred             cHHHHHHHHHHhccCCCCcccCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHH---HHhc--
Confidence            344678899999999987766788999999999999999999999999986532       2345789998   5432  


Q ss_pred             CCCcchhhHHHHhhhhhcCCCCCCccch--hhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHH
Q psy17322        274 NSNLSLSCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLC  351 (414)
Q Consensus       274 ~~~~~~~~~qIekDv~RT~p~~~~F~~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~  351 (414)
                        ..  ..++|++||+||+|++++|+.+  .+++.|+|||.||+.+||++|||||||+|||+||++++|++|||||+++|
T Consensus       101 --~~--~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~  176 (331)
T 3qye_A          101 --TS--QQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLM  176 (331)
T ss_dssp             --CT--THHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             --CC--chhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence              22  5789999999999999999976  67899999999999999999999999999999999999999999999999


Q ss_pred             Hhh-cccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCC
Q psy17322        352 ESL-LPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKS  413 (414)
Q Consensus       352 ~~~-lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~d  413 (414)
                      +++ ++++|.+++.|+...+.+++.+++.++|+||+||.+.|+ +..|+++||+|||++.+|.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~  240 (331)
T 3qye_A          177 FDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLG  240 (331)
T ss_dssp             TTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHH
T ss_pred             HhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHH
Confidence            986 789999999999999999999999999999999999999 67889999999999999954
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Back     alignment and structure
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 9e-22
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.3 bits (223), Expect = 9e-22
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 36/175 (20%)

Query: 220 SMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSL 279
           ++    ++  +   G+P   R  +W    G L    +  + +   +R+   +      S 
Sbjct: 18  TIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSD 77

Query: 280 SC-------DEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTS 332
                     +IE D+ R+ P  P +Q +   N+L+R+L  +A ++P  GY Q +N + +
Sbjct: 78  QHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVT 137

Query: 333 VFLIYTS-----------------------------EQEAFWLLVCLCESLLPDY 358
            F                                  E + FW L  L E +  +Y
Sbjct: 138 PFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.96
d1zsqa1125 Myotubularin-related protein 2, N-terminal domain 95.32
d1t77a2110 Lipopolysaccharide-responsive and beige-like ancho 95.23
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 94.32
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 92.51
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 90.35
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.6e-30  Score=234.96  Aligned_cols=150  Identities=23%  Similarity=0.396  Sum_probs=118.4

Q ss_pred             hchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhh--------hcChhHHHHHHHHHHhhCC
Q psy17322        202 EVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEM--------LRDPDLYAAMRRRVQNERP  273 (414)
Q Consensus       202 ~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~--------~~~~~~Y~~l~~~l~~~~~  273 (414)
                      ..+.++|++++.+.+    ..+.++|++++++|||+++|+.||+.++|+....        ......|...   ......
T Consensus         4 ~~~i~~~~~~l~~~~----~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~---~~~~~~   76 (194)
T d1fkma1           4 IQRISKFDNILKDKT----IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDS---LKHTFS   76 (194)
T ss_dssp             HHHHHHHHHHHSSCS----BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHH---HHHTSS
T ss_pred             HHHHHHHHHHhcccC----CCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhh---hhhhhh
Confidence            356778999987532    2367899999999999999999999999985322        2223344444   333222


Q ss_pred             CC--CcchhhHHHHhhhhhcCCCCCCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC-------------
Q psy17322        274 NS--NLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT-------------  338 (414)
Q Consensus       274 ~~--~~~~~~~qIekDv~RT~p~~~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-------------  338 (414)
                      ..  ......++|++||.||+|++++|+.+.+++.|+|||.|||.+||++|||||||+|||+||+++             
T Consensus        77 ~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~  156 (194)
T d1fkma1          77 DQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDV  156 (194)
T ss_dssp             SSCSTHHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGT
T ss_pred             cccccchHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhh
Confidence            21  112356899999999999999999999999999999999999999999999999999999653             


Q ss_pred             ----------------CHHHHHHHHHHHHHhhccccc
Q psy17322        339 ----------------SEQEAFWLLVCLCESLLPDYY  359 (414)
Q Consensus       339 ----------------~Ee~aFw~l~~L~~~~lp~~f  359 (414)
                                      .|++|||||+++|+++ +++|
T Consensus       157 ~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i-~d~y  192 (194)
T d1fkma1         157 EIKDPSTYMVDEQITDLEADTFWCLTKLLEQI-TDNY  192 (194)
T ss_dssp             TTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG-GGGS
T ss_pred             hhcchhhhhhhhhhhhHHHHHHHHHHHHHHhh-hccC
Confidence                            2889999999999984 4555
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure