Psyllid ID: psy17326

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYWLEGTKKANEEDGGNENDN
Secondary Structure (PSIPRED)
ccccccEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEccccccccccEEEEccccccccEEEEEEccEEEEEEccccEEEEEcccccccEEEEcccccccEEEEEEccccccccccccccccccccEEEcccccccEEEEccccEEEcccccEEcccccEEEEEEccEEEEccccccccccccEEEEEccccEEEEEcccccccccEEEEccccccEEEEEEEccccEEEEEEccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccEEEEEccccEEEEEEccccEEEEEEccccccEEEEEcccccccEEEEEccccccccEEEEEEccEEEEEEccccEEEEEEccccccEEEEEEcccccccEEEEcccccccccccccccccccEEEEcccccccEEEEcccccEEccccccccccccEEEEEEcccEEEEcccccccccccccccccccEEEEEEEccccccccEEEEEcccccEEEEEEEcccccEEEEcccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mdessrstiistkiywpngltldiATRRVYFAESKLdfidfcnydgtsrqqdtlywtdrqlnrvvagshyllhphsltifedTLYWTDRQLNRVLSAHKFRGKNQTVVSHLIsqplsihvhhpslqpitrndcvnapcqqlcllspssstgytckciagfrvtkdgrcveeetPVLLVMKGsqivdvslkpgdkketpvLLVMKGsqivdvslkpgdkssgiitpvvgvenglqveFDKKAAMLYWLEGTkkaneedggnendn
Flexible Loop (DISEMBL)
mdessrstiistkiywpngltldIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAgfrvtkdgrcVEEETPvllvmkgsqivdvslkpgdkketpvLLVMKgsqivdvslkpgdkssgiitpVVGVENGLQVEFDKKAAMLYWLEgtkkaneedggnendn
Low Complexity Region (SEG)
MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNApcqqlcllspsssTGYTCKCIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYWLEGTKKAneedggnendn
Disordered region (IsUnstruct)
********IISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKP****ETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYWLE****************
Disordered Region (DISOPRED)
MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYWLEGTKKAN****G*****
Disordered Region (DISEMBL)
********IISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYWLEGTKKA***********
Disordered Region (DISPRO)
****SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYWLEGTKKANEEDG******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYWLEGTKKANEEDGGNENDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
P98158	4660	Low-density lipoprotein r	yes	N/A	0.852	0.048	0.366	1e-46
A2ARV4	4660	Low-density lipoprotein r	yes	N/A	0.852	0.048	0.358	6e-46
P98164	4655	Low-density lipoprotein r	yes	N/A	0.806	0.045	0.375	3e-44
Q04833	4753	Low-density lipoprotein r	yes	N/A	0.829	0.046	0.355	2e-41
O88572	1613	Low-density lipoprotein r	no	N/A	0.806	0.132	0.339	3e-32
O75581	1613	Low-density lipoprotein r	no	N/A	0.806	0.132	0.328	2e-30
Q8VI56	1905	Low-density lipoprotein r	no	N/A	0.780	0.108	0.308	2e-30
O75096	1905	Low-density lipoprotein r	no	N/A	0.780	0.108	0.308	2e-30
Q9QYP1	1905	Low-density lipoprotein r	no	N/A	0.780	0.108	0.308	2e-30
P98157	4543	Low-density lipoprotein r	no	N/A	0.689	0.040	0.360	1e-29

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/262 (36%), Positives = 147/262 (56%), Gaps = 37/262 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD + R+ I+  KIYWP GL++D   R +YF ++ LD+I+FC+YDG +R+Q         
Sbjct: 1585 MDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGHNRRQ--------- 1635

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+A    L HPH+LT+FED +YWTDR   +V+ A+K+ G NQ+VV + + QPL I  
Sbjct: 1636 ---VIASDLVLHHPHALTLFEDFVYWTDRGTRQVMQANKWHGGNQSVVMYSVHQPLGITA 1692

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
             HPS QP +RN C +A C  LCLLS  +   Y+C C +G+ ++ D          +  ++
Sbjct: 1693 IHPSRQPPSRNPCASASCSHLCLLSAQAPRHYSCACPSGWNLSDDS---------VNCVR 1743

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            G Q              P L+ ++ + I  +SL P  KS+  + P+ G+++G  VEFD  
Sbjct: 1744 GDQ--------------PFLMSVRDNIIFGISLDPEVKSNDAMVPISGIQHGYDVEFDDS 1789

Query: 241  AAMLYWLEGTKKAN--EEDGGN 260
               +YW+E   + +  + DG N
Sbjct: 1790 EQFIYWVENPGEIHRVKTDGSN 1811

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.
Rattus norvegicus (taxid: 10116)

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score =  184 bits (467), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 148/262 (56%), Gaps = 37/262 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD + R+ I+  KIYWP GL++D   R +YF ++ LD+I+FC+YDG +R+Q         
Sbjct: 1585 MDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGQNRRQ--------- 1635

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+A    L HPH+LT+FED+++WTDR  ++V+ A+K+ G+NQ+VV + + QPL I  
Sbjct: 1636 ---VIASDLVLHHPHALTLFEDSVFWTDRGTHQVMQANKWHGRNQSVVMYSVPQPLGIIA 1692

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
             HPS QP + N C +A C  LCLLS      Y+C C +G+ ++ D          +  ++
Sbjct: 1693 IHPSRQPSSPNPCASATCSHLCLLSAQEPRHYSCACPSGWNLSDDS---------VNCVR 1743

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            G Q              P L+ ++ + I  +SL P  KS+  + P+ G+++G  VEFD  
Sbjct: 1744 GDQ--------------PFLISVRENVIFGISLDPEVKSNDAMVPISGIQHGYDVEFDDS 1789

Query: 241  AAMLYWLEGTKKAN--EEDGGN 260
               +YW+E   + +  + DG N
Sbjct: 1790 EQFIYWVENPGEIHRVKTDGSN 1811

Acts together with cubilin to mediate HDL endocytosis.

Mus musculus (taxid: 10090)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 137/248 (55%), Gaps = 35/248 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD S R+ I+  KI+WP GLT+D   R +YF +S LD++DFC+Y+G  R+Q         
Sbjct: 1584 MDGSMRTVIVQDKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHRRQ--------- 1634

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+A    + HP++LT+FED++YWTDR   RV+ A+K+ G NQ+VV + I  PL I  
Sbjct: 1635 ---VIASDLIIRHPYALTLFEDSVYWTDRATRRVMRANKWHGGNQSVVMYNIQWPLGIVA 1691

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
             HPS QP + N C  + C  LCLLS      Y+C C +G+ ++ D         +L  ++
Sbjct: 1692 VHPSKQPNSVNPCAFSRCSHLCLLSSQGPHFYSCVCPSGWSLSPD---------LLNCLR 1742

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
              Q              P L+ ++   I  +SL P  KS+  + P+ G++NGL VEFD  
Sbjct: 1743 DDQ--------------PFLITVRQHIIFGISLNPEVKSNDAMVPIAGIQNGLDVEFDDA 1788

Query: 241  AAMLYWLE 248
               +YW+E
Sbjct: 1789 EQYIYWVE 1796

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 137/256 (53%), Gaps = 37/256 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD + R  I+ TKIYWPN + LD  T RVYFA+SKLDFIDF NYDG+ R Q         
Sbjct: 1629 MDGTDRQIIVKTKIYWPNTIALDYTTDRVYFADSKLDFIDFVNYDGSGRTQ--------- 1679

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKF-RGKNQTVVSHLISQPLSIH 119
               V+A S ++ HPH+L IFED +Y++DR+L ++    K+  G      SH  S+ L + 
Sbjct: 1680 ---VLASSKFVQHPHALAIFEDMMYYSDRRLQKLQVYPKYPNGTTSEYPSHTFSKALGVV 1736

Query: 120  VHHPSLQPITRND-CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDG-RCVEEETPVLL 177
              HP LQP+ +N+ C   PC  LCLL+  ++  +TCKC  G ++   G +C+++  P L+
Sbjct: 1737 AVHPVLQPVIKNNPCSTNPCSHLCLLNNKNT--FTCKCPMGEKLDASGKKCIDDAKPFLV 1794

Query: 178  VMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEF 237
            +++ + +  + +    +KETPVL  M                     P+ G+ N     +
Sbjct: 1795 IIQKTNVFGIEMNSASEKETPVLAGM--------------------VPLSGLGNAFDAAY 1834

Query: 238  DKKAAMLYWLEGTKKA 253
            D  +  ++ LE T  A
Sbjct: 1835 DALSEEMFILEHTNHA 1850

May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin.

Caenorhabditis elegans (taxid: 6239)

>sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1

 Score =  138 bits (348), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 131/256 (51%), Gaps = 43/256 (16%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD SSR  II+T+IYWPNGLTLD   R++Y+A++KL+FI   N DGT+RQ          
Sbjct: 168 MDGSSRFVIINTEIYWPNGLTLDYQERKLYWADAKLNFIHKSNLDGTNRQA--------- 218

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              VV GS  L HP +LT+FEDTLYWTD   + +L+ +K+ G+    +   I  P+ IH 
Sbjct: 219 ---VVKGS--LPHPFALTLFEDTLYWTDWNTHSILACNKYTGEGLREIHSNIFSPMDIHA 273

Query: 121 HHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEETPVLL 177
                QP   N C   N  C  LCL+SP     Y C C  G ++ ++G+ C +  T +LL
Sbjct: 274 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF-YQCACPTGVKLMENGKTCKDGATELLL 332

Query: 178 VMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEF 237
           + + + +  +SL      +TP           D+ L+  D           + + + +++
Sbjct: 333 LARRTDLRRISL------DTP--------DFTDIVLQLED-----------IRHAIAIDY 367

Query: 238 DKKAAMLYWLEGTKKA 253
           D     +YW +   +A
Sbjct: 368 DPVEGYIYWTDDEVRA 383

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

>sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 43/256 (16%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD SSR  II+++IYWPNGLTLD   +++Y+A++KL+FI   N DGT+RQ          
Sbjct: 168 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 218

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              VV GS  L HP +LT+FED LYWTD   + +L+ +K+ G+    +   I  P+ IH 
Sbjct: 219 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 273

Query: 121 HHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEETPVLL 177
                QP   N C   N  C  LCL+SP     Y C C  G ++ ++G+ C +  T +LL
Sbjct: 274 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF-YQCACPTGVKLLENGKTCKDGATELLL 332

Query: 178 VMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEF 237
           + + + +  +SL      +TP           D+ L+  D           + + + +++
Sbjct: 333 LARRTDLRRISL------DTP--------DFTDIVLQLED-----------IRHAIAIDY 367

Query: 238 DKKAAMLYWLEGTKKA 253
           D     +YW +   +A
Sbjct: 368 DPVEGYIYWTDDEVRA 383

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Homo sapiens (taxid: 9606)

>sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 44/250 (17%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R  I  T ++WPNGLT+D A RR+Y+ ++K   I+  N DG+ R+          
Sbjct: 584 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---------- 633

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                  S  L HP ++T+FED+LYWTD     + SA+KF GKNQ ++ + +  P+ IH 
Sbjct: 634 ----AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 689

Query: 121 HHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLV 178
            HP  QP  +N C   N  C  LCL    S   YTC C  GFR      C +     LL 
Sbjct: 690 LHPQRQPAGKNRCGDNNGGCTHLCL---PSGQNYTCACPTGFRKINSHACAQSLDKFLLF 746

Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
            +   I  +S    D  +                          + P+  V + + +++D
Sbjct: 747 ARRMDIRRISFDTEDLSDD-------------------------VIPLADVRSAVALDWD 781

Query: 239 KKAAMLYWLE 248
            +   +YW +
Sbjct: 782 SRDDHVYWTD 791

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Mus musculus (taxid: 10090)

>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 44/250 (17%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R  I  T ++WPNGLT+D A RR+Y+ ++K   I+  N DG+ R+          
Sbjct: 584 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---------- 633

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                  S  L HP ++T+FED+LYWTD     + SA+KF GKNQ ++ + +  P+ IH 
Sbjct: 634 ----AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 689

Query: 121 HHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLV 178
            HP  QP  +N C   N  C  LCL    S   YTC C  GFR      C +     LL 
Sbjct: 690 LHPQRQPAGKNRCGDNNGGCTHLCL---PSGQNYTCACPTGFRKISSHACAQSLDKFLLF 746

Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
            +   I  +S    D  +                          + P+  V + + +++D
Sbjct: 747 ARRMDIRRISFDTEDLSDD-------------------------VIPLADVRSAVALDWD 781

Query: 239 KKAAMLYWLE 248
            +   +YW +
Sbjct: 782 SRDDHVYWTD 791

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 44/250 (17%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R  I  T ++WPNGLT+D A RR+Y+ ++K   I+  N DG+ R+          
Sbjct: 584 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---------- 633

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                  S  L HP ++T+FED+LYWTD     + SA+KF GKNQ ++ + +  P+ IH 
Sbjct: 634 ----AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 689

Query: 121 HHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLV 178
            HP  QP  +N C   N  C  LCL    S   YTC C  GFR      C +     LL 
Sbjct: 690 LHPQRQPAGKNRCGDNNGGCTHLCL---PSGQNYTCACPTGFRKINSHACAQSLDKFLLF 746

Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
            +   I  +S    D  +                          + P+  V + + +++D
Sbjct: 747 ARRMDIRRISFDTEDLSDD-------------------------VIPLADVRSAVALDWD 781

Query: 239 KKAAMLYWLE 248
            +   +YW +
Sbjct: 782 SRDDHVYWTD 791

Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 110/208 (52%), Gaps = 26/208 (12%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD ++RS I+ TKI WPNGLTLD    R+Y+A+++ D+I+F + DG+             
Sbjct: 3172 MDGTNRSVIVDTKITWPNGLTLDYINSRIYWADAREDYIEFASLDGS------------- 3218

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
             NR    S  + H  +LT+FED +YWTD +   +  AHK  G N+T++   + +P+ IH+
Sbjct: 3219 -NRHTVLSQDIPHIFALTLFEDYIYWTDWETKSINRAHKTTGANKTLLISTLHRPMDIHI 3277

Query: 121  HHPSLQP-ITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEETPVL 176
            +HP  QP +  + C   NA C  LCLLSP    G+ C C   F +  DG+ CV   T   
Sbjct: 3278 YHPYRQPDVPNHPCKTNNAGCSNLCLLSPGG--GHKCACPTNFYLGSDGKTCVSNCTASQ 3335

Query: 177  LVMKGSQIV------DVSLKPGDKKETP 198
             V K  + +      D     GD+ + P
Sbjct: 3336 FVCKNDKCIPFWWKCDTEDDCGDRSDEP 3363

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
270015974	2145	hypothetical protein TcasGA2_TC004414 [T	0.829	0.102	0.647	9e-92
242019639	4568	low-density lipoprotein receptor, putati	0.833	0.048	0.626	5e-88
328709384	4640	PREDICTED: low-density lipoprotein recep	0.829	0.047	0.638	2e-87
307171853	4578	Low-density lipoprotein receptor-related	0.837	0.048	0.612	4e-85
307208125	4539	Low-density lipoprotein receptor-related	0.837	0.048	0.600	4e-83
383859306	4572	PREDICTED: low-density lipoprotein recep	0.837	0.048	0.612	2e-82
195049411	4576	GH24913 [Drosophila grimshawi] gi|193893	0.829	0.047	0.588	3e-82
350411403	4608	PREDICTED: low-density lipoprotein recep	0.837	0.047	0.600	4e-82
194890512	4502	GG18978 [Drosophila erecta] gi|190648976	0.829	0.048	0.584	5e-82
195132161	4555	GI15973 [Drosophila mojavensis] gi|19390	0.829	0.048	0.588	5e-82

>gi|270015974|gb|EFA12422.1| hypothetical protein TcasGA2_TC004414 [Tribolium castaneum]

 Score =  342 bits (877), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 165/255 (64%), Positives = 193/255 (75%), Gaps = 36/255 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD + RSTII+TKIYWPNGLTLD AT+RVYFA+SKLDFIDFC Y+GT RQQ         
Sbjct: 1537 MDGTKRSTIINTKIYWPNGLTLDTATQRVYFADSKLDFIDFCYYNGTGRQQ--------- 1587

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+AGSHYLLHPHSLT+FEDTLYWTDRQLNRVLSAHKF+G NQTVVSHLISQPLSIHV
Sbjct: 1588 ---VLAGSHYLLHPHSLTLFEDTLYWTDRQLNRVLSAHKFKGNNQTVVSHLISQPLSIHV 1644

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HHPSLQPIT N C N PCQ +CLLSPSSSTGYTCKC AGF++  DGRC EEE  +LLVM 
Sbjct: 1645 HHPSLQPITENPCQNNPCQHICLLSPSSSTGYTCKCKAGFKLISDGRCTEEELSLLLVMT 1704

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            G+QI+DVS  P                        GD S+G +TP+VGVENG+Q+E+D+K
Sbjct: 1705 GTQIIDVSATP------------------------GDNSAGFLTPIVGVENGVQIEYDRK 1740

Query: 241  AAMLYWLEGTKKANE 255
             ++++W+EG +  +E
Sbjct: 1741 NSVVFWVEGKETEDE 1755

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019639|ref|XP_002430267.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212515374|gb|EEB17529.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 161/257 (62%), Positives = 193/257 (75%), Gaps = 37/257 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD  +RSTII+TKIYWPNGLTLD+AT+R+YFA+SKLD+IDFC Y+G+ RQQ         
Sbjct: 1527 MDGLNRSTIINTKIYWPNGLTLDVATKRIYFADSKLDYIDFCYYNGSGRQQ--------- 1577

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+AGSHYLLHPHSLT+FEDTLYWTDRQLNRVLSA KFRGKNQTVVSHLISQPLSIHV
Sbjct: 1578 ---VLAGSHYLLHPHSLTLFEDTLYWTDRQLNRVLSAQKFRGKNQTVVSHLISQPLSIHV 1634

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HHP+LQPIT N C+NA CQ LCLLSP SSTGYTCKC  GF+ + +G+C EEE+  L+VMK
Sbjct: 1635 HHPALQPITPNPCLNANCQHLCLLSPYSSTGYTCKCKPGFKTSPNGKCTEEESAFLMVMK 1694

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            GSQI+DVS                        L PGDK+ G +T VVG+E GL +++D+K
Sbjct: 1695 GSQIIDVS------------------------LTPGDKTGGFLTAVVGIEGGLHLDYDRK 1730

Query: 241  AAMLYWLEGTKKANEED 257
               +YW+EG K+ +EE+
Sbjct: 1731 MQTIYWVEG-KEDDEEN 1746

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709384|ref|XP_001944217.2| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Acyrthosiphon pisum]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 164/257 (63%), Positives = 189/257 (73%), Gaps = 38/257 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD S+RS IIS+KIYWPNGLTLDI  +RVYFA+SKLDFIDFC Y+GT RQQ         
Sbjct: 1590 MDGSNRSVIISSKIYWPNGLTLDIVNQRVYFADSKLDFIDFCYYNGTGRQQ--------- 1640

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+AGSHYLLHPHSLT+FEDTLYWTDRQLNRVLSAHKF+GKNQTVVSHLISQPLSIHV
Sbjct: 1641 ---VIAGSHYLLHPHSLTLFEDTLYWTDRQLNRVLSAHKFKGKNQTVVSHLISQPLSIHV 1697

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HHPSLQPIT N C NA C+QLCLLSPS+  GYTCKC  G+RV   G+C+E          
Sbjct: 1698 HHPSLQPITPNPCENATCEQLCLLSPSTPNGYTCKCKPGYRVDG-GQCIE---------- 1746

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
                           E+P LLVM+G QI+DVSL PGDK++G I P+VG+E G QV++D +
Sbjct: 1747 --------------NESPFLLVMRGYQIIDVSLTPGDKTTGHIVPIVGIEGGTQVDYDTE 1792

Query: 241  AAMLYWLEGTKKANEED 257
               L+W+EG  K NEED
Sbjct: 1793 TKSLFWVEGL-KVNEED 1808

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171853|gb|EFN63508.1| Low-density lipoprotein receptor-related protein 2 [Camponotus floridanus]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 158/258 (61%), Positives = 187/258 (72%), Gaps = 37/258 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD ++RSTIISTKIYWPNGL LDIA RR+YFA+SKLDFID C YDG+ R Q         
Sbjct: 1551 MDGTNRSTIISTKIYWPNGLALDIANRRIYFADSKLDFIDTCLYDGSKRIQ--------- 1601

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+AGSHYLLHPHSLT+FEDT+YWTDRQLNRVLSAHKF+G NQTVVSHLISQPLSIHV
Sbjct: 1602 ---VLAGSHYLLHPHSLTLFEDTMYWTDRQLNRVLSAHKFKGVNQTVVSHLISQPLSIHV 1658

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HHP LQPIT N C NA C+ LCLLSPS+  GY CKC  GF++  DGRC+EEETP L+V++
Sbjct: 1659 HHPVLQPITVNPCANASCEHLCLLSPSNPMGYNCKCQIGFKLLPDGRCLEEETPYLMVLR 1718

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            GSQ+VDVSL PG+ K                        +G ITP+VGVE G  +++D+ 
Sbjct: 1719 GSQVVDVSLTPGETK------------------------TGYITPIVGVEGGRFIDYDRS 1754

Query: 241  AAMLYWLEGTKKANEEDG 258
            A  +YWL+G K  + E+G
Sbjct: 1755 ARKIYWLQG-KDDDSENG 1771

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208125|gb|EFN85629.1| Low-density lipoprotein receptor-related protein 2 [Harpegnathos saltator]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 155/258 (60%), Positives = 187/258 (72%), Gaps = 37/258 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD ++RSTIISTKIYWPNGL LDIA RR+YFA+SKLDFID C YDG+ R Q         
Sbjct: 1520 MDGNNRSTIISTKIYWPNGLALDIANRRIYFADSKLDFIDTCLYDGSKRIQ--------- 1570

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+A SHYLLHPHSLT+FEDT+YWTDRQLNRVLSAHKF G NQTVVSHLISQPLSIHV
Sbjct: 1571 ---VLASSHYLLHPHSLTLFEDTMYWTDRQLNRVLSAHKFMGSNQTVVSHLISQPLSIHV 1627

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HHP LQPIT N C NA C+ LCLLS ++  GY+CKC  GF++  +GRC+EEETP L++++
Sbjct: 1628 HHPVLQPITPNPCANAMCEHLCLLSHNNPMGYSCKCQVGFKLLSNGRCMEEETPYLMILR 1687

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            GSQIVDVSL PG+ K                        +G ITPVVGVENG  +++D+ 
Sbjct: 1688 GSQIVDVSLTPGEVK------------------------TGYITPVVGVENGRFIDYDRN 1723

Query: 241  AAMLYWLEGTKKANEEDG 258
              ++YWL+G K  ++E+G
Sbjct: 1724 NRVIYWLQG-KDGDDENG 1740

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859306|ref|XP_003705136.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Megachile rotundata]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/258 (61%), Positives = 185/258 (71%), Gaps = 37/258 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD ++RSTIISTKIYWPNGL LDIA +R+YFA+SKLDFID C YDGT R Q         
Sbjct: 1595 MDGTNRSTIISTKIYWPNGLALDIANKRIYFADSKLDFIDTCLYDGTKRIQ--------- 1645

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+A SHYLLHPHSLT+FEDT+YWTDRQLNRVLSAHKF G NQTVVSHLISQPLSIHV
Sbjct: 1646 ---VLASSHYLLHPHSLTLFEDTMYWTDRQLNRVLSAHKFYGVNQTVVSHLISQPLSIHV 1702

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HHP LQPIT N C NA C  LCLLSP+S  GY+CKC  GFR+  +G+C+EEETP L+V  
Sbjct: 1703 HHPVLQPITPNPCENASCGHLCLLSPTSPEGYSCKCQVGFRLLPNGQCLEEETPYLMV-- 1760

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
                                  ++GSQIVDVSL PG  ++G ITPVVGVE G  V++D+K
Sbjct: 1761 ----------------------LRGSQIVDVSLIPGSTNTGYITPVVGVEGGKFVDYDRK 1798

Query: 241  AAMLYWLEGTKKANEEDG 258
               +YWL+ TK  ++E+G
Sbjct: 1799 ERTIYWLQ-TKDDDDENG 1815

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195049411|ref|XP_001992716.1| GH24913 [Drosophila grimshawi] gi|193893557|gb|EDV92423.1| GH24913 [Drosophila grimshawi]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 150/255 (58%), Positives = 183/255 (71%), Gaps = 36/255 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD + R TII+TKIYWPNGLTLDIAT+RVYFA+SKLDFIDFC Y+GT RQQ         
Sbjct: 1521 MDGTMRKTIINTKIYWPNGLTLDIATKRVYFADSKLDFIDFCYYNGTGRQQ--------- 1571

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+A SHYLLHPHSL++FEDTLYWTDRQLNRVLSA+KFRGKNQTVVSHLISQPLSIHV
Sbjct: 1572 ---VLASSHYLLHPHSLSLFEDTLYWTDRQLNRVLSANKFRGKNQTVVSHLISQPLSIHV 1628

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HH SLQP+  N C  A CQ LCLLSPS+S GY+CKC  G+R+  +GRC+EEE P L+V+K
Sbjct: 1629 HHASLQPMYPNPCAQARCQHLCLLSPSASEGYSCKCKPGYRLLSEGRCIEEENPYLMVVK 1688

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            G+QIVD+ L  GD +                        +G + PV+G+E+   ++FD+K
Sbjct: 1689 GTQIVDLPLNGGDAR------------------------AGALAPVIGIESSTGLDFDRK 1724

Query: 241  AAMLYWLEGTKKANE 255
               LYW++G +  +E
Sbjct: 1725 GETLYWVQGREDDDE 1739

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411403|ref|XP_003489337.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Bombus impatiens]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/258 (60%), Positives = 185/258 (71%), Gaps = 37/258 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD ++RSTII+TKIYWPNGL LDIA +R+YFA+SK DFID C YDGT R Q         
Sbjct: 1591 MDGTNRSTIINTKIYWPNGLALDIANKRIYFADSKFDFIDTCLYDGTKRIQ--------- 1641

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+AGSHYLLHPHSLT+FEDT+YWTDRQLNRVLSAHKF G NQTVVSHLISQPLSIHV
Sbjct: 1642 ---VLAGSHYLLHPHSLTLFEDTMYWTDRQLNRVLSAHKFYGVNQTVVSHLISQPLSIHV 1698

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            +HP+LQPIT N C NA C  LCLLSP++  GYTCKC  GF++  +G+C EEE P L+V++
Sbjct: 1699 NHPALQPITPNPCANATCDHLCLLSPTNPQGYTCKCQVGFKLQYNGQCKEEEMPYLMVLR 1758

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            GSQIVDVSL PG  K                        +G ITPVVGVE G  +++DK+
Sbjct: 1759 GSQIVDVSLVPGSTK------------------------TGYITPVVGVEGGKFIDYDKR 1794

Query: 241  AAMLYWLEGTKKANEEDG 258
              M+YWL+ TK  ++E+G
Sbjct: 1795 ERMIYWLQ-TKDDDDENG 1811

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194890512|ref|XP_001977327.1| GG18978 [Drosophila erecta] gi|190648976|gb|EDV46254.1| GG18978 [Drosophila erecta]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 149/255 (58%), Positives = 183/255 (71%), Gaps = 36/255 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD + R TII+TKIYWPNGLTLDIAT+RVYFA+SKLDFIDFC Y+GT RQQ         
Sbjct: 1439 MDGTMRKTIINTKIYWPNGLTLDIATKRVYFADSKLDFIDFCYYNGTGRQQ--------- 1489

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+A SHYLLHPHSL++FEDTLYWTDRQLNRVLSA+KFRGKNQTVVSHLISQPLSIHV
Sbjct: 1490 ---VLASSHYLLHPHSLSLFEDTLYWTDRQLNRVLSANKFRGKNQTVVSHLISQPLSIHV 1546

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HH SLQP+T N C  + CQ LCLLSPS+  GY+CKC  GF++  +GRC+EEE P L+V+K
Sbjct: 1547 HHASLQPMTPNPCAGSRCQHLCLLSPSAQEGYSCKCKPGFKLLSEGRCIEEENPFLMVVK 1606

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            G+QIVD+ L  GD +                        +G + PV+G+E+   ++FD+K
Sbjct: 1607 GTQIVDLPLNGGDAR------------------------AGALAPVIGIESSTGLDFDRK 1642

Query: 241  AAMLYWLEGTKKANE 255
               LYW++G +  +E
Sbjct: 1643 GETLYWVQGREDDDE 1657

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132161|ref|XP_002010512.1| GI15973 [Drosophila mojavensis] gi|193908962|gb|EDW07829.1| GI15973 [Drosophila mojavensis]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 150/255 (58%), Positives = 182/255 (71%), Gaps = 36/255 (14%)

Query: 1    MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
            MD + R TII+TKIYWPNGLTLDIAT+RVYFA+SKLDFIDFC Y+GT RQQ         
Sbjct: 1503 MDGTMRKTIINTKIYWPNGLTLDIATKRVYFADSKLDFIDFCYYNGTGRQQ--------- 1553

Query: 61   LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
               V+A SHYLLHPHSL++FEDTLYWTDRQLNRVLSA+KFRGKNQTVVSHLISQPLSIHV
Sbjct: 1554 ---VLASSHYLLHPHSLSLFEDTLYWTDRQLNRVLSANKFRGKNQTVVSHLISQPLSIHV 1610

Query: 121  HHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            HH SLQP+  N C  A CQ LCLLSPS+  GY+CKC  GFR+  +GRC+EEE P L+V+K
Sbjct: 1611 HHASLQPMFPNPCAQARCQHLCLLSPSTQEGYSCKCKPGFRLHSEGRCIEEENPYLMVVK 1670

Query: 181  GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            G+QIVD+ L  GD +                        +G + PV+G+E+   ++FD+K
Sbjct: 1671 GTQIVDLPLNGGDAR------------------------AGALAPVIGIESSTGLDFDRK 1706

Query: 241  AAMLYWLEGTKKANE 255
               LYW++G +  +E
Sbjct: 1707 GETLYWVQGREDDDE 1721

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.693	0.038	0.651	2.9e-64
ZFIN|ZDB-GENE-050119-2	4673	lrp2a "low density lipoprotein	0.738	0.041	0.386	9.2e-35
RGD|68407	4660	Lrp2 "low density lipoprotein	0.734	0.041	0.375	2.4e-34
UNIPROTKB|P98158	4660	Lrp2 "Low-density lipoprotein	0.734	0.041	0.375	2.4e-34
UNIPROTKB|F1N6H1	4626	LRP2 "Uncharacterized protein"	0.746	0.042	0.377	3e-34
UNIPROTKB|F1PIB4	4549	LRP2 "Uncharacterized protein"	0.742	0.043	0.353	4.8e-34
MGI|MGI:95794	4660	Lrp2 "low density lipoprotein	0.734	0.041	0.365	6.3e-34
UNIPROTKB|F1NJS9	4644	LRP2 "Uncharacterized protein"	0.776	0.044	0.381	7e-34
UNIPROTKB|F1NCT2	4645	LRP2 "Uncharacterized protein"	0.776	0.044	0.381	7e-34
WB|WBGene00003071	4753	lrp-1 [Caenorhabditis elegans	0.719	0.039	0.375	7.5e-33

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 659 (237.0 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 127/195 (65%), Positives = 148/195 (75%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD + R TII+TKIYWPNGLTLDIAT+RVYFA+SKLDFIDFC Y+GT RQQ         
Sbjct:  1706 MDGTMRKTIINTKIYWPNGLTLDIATKRVYFADSKLDFIDFCYYNGTGRQQ--------- 1756

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                V+A SHYLLHPHSL++FEDTLYWTDRQLNRVLSA+KFRGKNQTVVSHLISQPLSIHV
Sbjct:  1757 ---VLASSHYLLHPHSLSLFEDTLYWTDRQLNRVLSANKFRGKNQTVVSHLISQPLSIHV 1813

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
             HH SLQP+T N C  +              GY+CKC  GF++  +GRC+EEE P L+V+K
Sbjct:  1814 HHASLQPMTPNPCAGSRCQHLCLLSPSAPEGYSCKCRPGFKLLSEGRCIEEENPFLMVVK 1873

Query:   181 GSQIVDVSLKPGDKK 195
             G+QIVD+ L  GD +
Sbjct:  1874 GTQIVDLPLNGGDAR 1888

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

ZFIN|ZDB-GENE-050119-2 lrp2a "low density lipoprotein receptor-related protein 2a" [Danio rerio (taxid:7955)]

 Score = 383 (139.9 bits), Expect = 9.2e-35, Sum P(2) = 9.2e-35
 Identities = 83/215 (38%), Positives = 121/215 (56%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD   R+TIIS K+YWPNGLT+D     +YFA++ LDFID+C+YDG +R+Q         
Sbjct:  1582 MDGKLRTTIISNKLYWPNGLTIDYPNSLLYFADAYLDFIDYCDYDGKNRKQ--------- 1632

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                V+A    L HPH++TIFED +YWTDR +NRV+ A+K+ G+NQ+V+ + + QP+ +  
Sbjct:  1633 ---VLASDLVLQHPHAITIFEDFVYWTDRYVNRVIRANKWHGQNQSVMLYNLPQPMGLVA 1689

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTG---YTCKCIAGFRVTKDG-RCVEEETPVL 176
              HP+ QP   N C +               G   Y+C C +G+ +  D   C   E P L
Sbjct:  1690 LHPARQPAGYNPC-DPHSSPCTHICLLSAVGPRFYSCACPSGWTLAADQFTCARVEDPFL 1748

Query:   177 LVMKGSQIVDVSLKPGDKKE---TPVLLVMKGSQI 208
             +V++ S I  + L P DK      PV  ++ G  +
Sbjct:  1749 VVVRDSIIYGIPLNPNDKSNDAMVPVAGLLNGYDV 1783

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070293 "renal absorption" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|68407 Lrp2 "low density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 381 (139.2 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 78/208 (37%), Positives = 119/208 (57%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD + R+ I+  KIYWP GL++D   R +YF ++ LD+I+FC+YDG +R+Q         
Sbjct:  1585 MDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGHNRRQ--------- 1635

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                V+A    L HPH+LT+FED +YWTDR   +V+ A+K+ G NQ+VV + + QPL I  
Sbjct:  1636 ---VIASDLVLHHPHALTLFEDFVYWTDRGTRQVMQANKWHGGNQSVVMYSVHQPLGITA 1692

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDG-RCVEEETPVLLVM 179
              HPS QP +RN C +A               Y+C C +G+ ++ D   CV  + P L+ +
Sbjct:  1693 IHPSRQPPSRNPCASASCSHLCLLSAQAPRHYSCACPSGWNLSDDSVNCVRGDQPFLMSV 1752

Query:   180 KGSQIVDVSLKPGDKKETPVLLVMKGSQ 207
             + + I  +SL P + K    ++ + G Q
Sbjct:  1753 RDNIIFGISLDP-EVKSNDAMVPISGIQ 1779

GO:0004872 "receptor activity" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IEA;ISO

GO:0006766 "vitamin metabolic process" evidence=ISO;TAS

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA;IMP

GO:0007568 "aging" evidence=IEP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010165 "response to X-ray" evidence=IDA

GO:0010951 "negative regulation of endopeptidase activity" evidence=IC

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030492 "hemoglobin binding" evidence=IDA

GO:0030900 "forebrain development" evidence=ISO

GO:0031100 "organ regeneration" evidence=IEP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0032526 "response to retinoic acid" evidence=IEP

GO:0033280 "response to vitamin D" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042953 "lipoprotein transport" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0045056 "transcytosis" evidence=IMP

GO:0045177 "apical part of cell" evidence=ISO

GO:0046879 "hormone secretion" evidence=IMP

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IPI

GO:0042954 "lipoprotein transporter activity" evidence=IMP

UNIPROTKB|P98158 Lrp2 "Low-density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 381 (139.2 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 78/208 (37%), Positives = 119/208 (57%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD + R+ I+  KIYWP GL++D   R +YF ++ LD+I+FC+YDG +R+Q         
Sbjct:  1585 MDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGHNRRQ--------- 1635

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                V+A    L HPH+LT+FED +YWTDR   +V+ A+K+ G NQ+VV + + QPL I  
Sbjct:  1636 ---VIASDLVLHHPHALTLFEDFVYWTDRGTRQVMQANKWHGGNQSVVMYSVHQPLGITA 1692

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDG-RCVEEETPVLLVM 179
              HPS QP +RN C +A               Y+C C +G+ ++ D   CV  + P L+ +
Sbjct:  1693 IHPSRQPPSRNPCASASCSHLCLLSAQAPRHYSCACPSGWNLSDDSVNCVRGDQPFLMSV 1752

Query:   180 KGSQIVDVSLKPGDKKETPVLLVMKGSQ 207
             + + I  +SL P + K    ++ + G Q
Sbjct:  1753 RDNIIFGISLDP-EVKSNDAMVPISGIQ 1779

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N6H1 LRP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 370 (135.3 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
 Identities = 82/217 (37%), Positives = 123/217 (56%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD S R+ I+  KIYWPNGL LD   R +YF +  LD++DFC+YDG++R+Q         
Sbjct:  1560 MDGSQRTIIVQEKIYWPNGLALDYPNRLLYFMDGYLDYLDFCHYDGSNRRQ--------- 1610

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                V+A    L HP+S+++FEDT+YW+DR  + V+ A+K+ G NQ+VV  L  QPL I V
Sbjct:  1611 ---VIASDLILRHPYSISLFEDTVYWSDRATHEVMKANKWHGGNQSVVMTL-HQPLGIVV 1666

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDG-RCVEEETPVLLVM 179
              HP+ QP++ N C  +             + Y+C C +G+ + +D   CV ++   L+V+
Sbjct:  1667 VHPAKQPVSSNPC--SYTRCSHLCLLSSKSLYSCACPSGWSLARDSVTCVRDDQAFLIVV 1724

Query:   180 KGSQIVDVSLKPGDKK---ETPVLLVMKGSQI-VDVS 212
             + S I  +SL P  K      P+  +  G  + VD S
Sbjct:  1725 RNSIIFGISLNPDVKTFDGMVPISGIRNGYDVAVDYS 1761

GO:0031526 "brush border membrane" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PIB4 LRP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 363 (132.8 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
 Identities = 75/212 (35%), Positives = 118/212 (55%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD S R+ I+  KI+WP+G+T+D   R +YF +S LD+ID+C+YDG  R+Q         
Sbjct:  1556 MDGSLRTVIVQDKIFWPSGITIDYPNRLLYFLDSYLDYIDYCDYDGQHRRQ--------- 1606

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                V+A    L HP++LT+FED++YWTDR   +V+ A+K+ G NQ+V+   + QPL +  
Sbjct:  1607 ---VIASDLILRHPYALTLFEDSVYWTDRSTYQVVQANKWHGGNQSVIIRNVPQPLGVVA 1663

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDG-RCVEEETPVLLVM 179
              HP  QP   N C ++               Y+C C +G+ ++ D   C++++ P L+ +
Sbjct:  1664 VHPVKQPDGENSCASSSCSHLCLLSSQRPHLYSCACPSGWSLSHDSVTCLKDDQPFLITV 1723

Query:   180 KGSQIVDVSLKPGDKKE---TPVLLVMKGSQI 208
             + S I  +SL P  K      P+  VM G  +
Sbjct:  1724 RHSIIFGISLNPEVKSNDAMVPIAGVMNGYDV 1755

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:95794 Lrp2 "low density lipoprotein receptor-related protein 2" [Mus musculus (taxid:10090)]

 Score = 378 (138.1 bits), Expect = 6.3e-34, Sum P(2) = 6.3e-34
 Identities = 76/208 (36%), Positives = 121/208 (58%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD + R+ I+  KIYWP GL++D   R +YF ++ LD+I+FC+YDG +R+Q         
Sbjct:  1585 MDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGQNRRQ--------- 1635

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                V+A    L HPH+LT+FED+++WTDR  ++V+ A+K+ G+NQ+VV + + QPL I  
Sbjct:  1636 ---VIASDLVLHHPHALTLFEDSVFWTDRGTHQVMQANKWHGRNQSVVMYSVPQPLGIIA 1692

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDG-RCVEEETPVLLVM 179
              HPS QP + N C +A               Y+C C +G+ ++ D   CV  + P L+ +
Sbjct:  1693 IHPSRQPSSPNPCASATCSHLCLLSAQEPRHYSCACPSGWNLSDDSVNCVRGDQPFLISV 1752

Query:   180 KGSQIVDVSLKPGDKKETPVLLVMKGSQ 207
             + + I  +SL P + K    ++ + G Q
Sbjct:  1753 RENVIFGISLDP-EVKSNDAMVPISGIQ 1779

GO:0004872 "receptor activity" evidence=ISO;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=IMP

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010165 "response to X-ray" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030492 "hemoglobin binding" evidence=ISO

GO:0030900 "forebrain development" evidence=IMP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0042954 "lipoprotein transporter activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045056 "transcytosis" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046879 "hormone secretion" evidence=ISO

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISO

UNIPROTKB|F1NJS9 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 388 (141.6 bits), Expect = 7.0e-34, P = 7.0e-34
 Identities = 84/220 (38%), Positives = 126/220 (57%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD   R+ IIS+KIYWPNGL++D   + +YFA++ LD+IDFC+Y+G +R+Q         
Sbjct:  1569 MDGKLRTVIISSKIYWPNGLSIDYPNKLLYFADAYLDYIDFCDYNGNNRRQ--------- 1619

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                VVA    L HPH LTIFED +YW+DR  NRV+ A+K+ G NQTV+ + I QPL +  
Sbjct:  1620 ---VVASDLVLQHPHGLTIFEDFVYWSDRYTNRVIRANKWHGGNQTVMIYNIHQPLGLVA 1676

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLVM 179
              HP  QP   N C ++               ++C C +G+ ++ D R C+  E P L+ +
Sbjct:  1677 VHPVKQPYGINSCASSPCSHLCLLSSSGPLFFSCACPSGWMLSPDNRNCMRVEHPFLIAV 1736

Query:   180 KGSQIVDVSLKPGDKKETPVLLVMKGSQI-VDVSLKPGDK 218
             + + I  +SL P ++K    ++ + G Q  VDV     ++
Sbjct:  1737 RDNIIYGISLNP-EEKTNDAMVPIAGVQNGVDVDFDDSEQ 1775

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NCT2 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 388 (141.6 bits), Expect = 7.0e-34, P = 7.0e-34
 Identities = 84/220 (38%), Positives = 126/220 (57%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD   R+ IIS+KIYWPNGL++D   + +YFA++ LD+IDFC+Y+G +R+Q         
Sbjct:  1569 MDGKLRTVIISSKIYWPNGLSIDYPNKLLYFADAYLDYIDFCDYNGNNRRQ--------- 1619

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                VVA    L HPH LTIFED +YW+DR  NRV+ A+K+ G NQTV+ + I QPL +  
Sbjct:  1620 ---VVASDLVLQHPHGLTIFEDFVYWSDRYTNRVIRANKWHGGNQTVMIYNIHQPLGLVA 1676

Query:   121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLVM 179
              HP  QP   N C ++               ++C C +G+ ++ D R C+  E P L+ +
Sbjct:  1677 VHPVKQPYGINSCASSPCSHLCLLSSSGPLFFSCACPSGWMLSPDNRNCMRVEHPFLIAV 1736

Query:   180 KGSQIVDVSLKPGDKKETPVLLVMKGSQI-VDVSLKPGDK 218
             + + I  +SL P ++K    ++ + G Q  VDV     ++
Sbjct:  1737 RDNIIYGISLNP-EEKTNDAMVPIAGVQNGVDVDFDDSEQ 1775

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

WB|WBGene00003071 lrp-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 365 (133.5 bits), Expect = 7.5e-33, Sum P(2) = 7.5e-33
 Identities = 77/205 (37%), Positives = 115/205 (56%)

Query:     1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
             MD + R  I+ TKIYWPN + LD  T RVYFA+SKLDFIDF NYDG+ R Q         
Sbjct:  1629 MDGTDRQIIVKTKIYWPNTIALDYTTDRVYFADSKLDFIDFVNYDGSGRTQ--------- 1679

Query:    61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKF-RGKNQTVVSHLISQPLSIH 119
                V+A S ++ HPH+L IFED +Y++DR+L ++    K+  G      SH  S+ L + 
Sbjct:  1680 ---VLASSKFVQHPHALAIFEDMMYYSDRRLQKLQVYPKYPNGTTSEYPSHTFSKALGVV 1736

Query:   120 VHHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLV 178
               HP LQP+ +N+  +              T +TCKC  G ++   G+ C+++  P L++
Sbjct:  1737 AVHPVLQPVIKNNPCSTNPCSHLCLLNNKNT-FTCKCPMGEKLDASGKKCIDDAKPFLVI 1795

Query:   179 MKGSQIVDVSLKPGDKKETPVLLVM 203
             ++ + +  + +    +KETPVL  M
Sbjct:  1796 IQKTNVFGIEMNSASEKETPVLAGM 1820

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0042395 "ecdysis, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0015918 "sterol transport" evidence=ISS;IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0015248 "sterol transporter activity" evidence=ISS;IMP

GO:0030334 "regulation of cell migration" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005798 "Golgi-associated vesicle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	264
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	5e-10

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 53.4 bits (129), Expect = 5e-10
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 8  TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR 49
          T++S+ +  PNGL +D    R+Y+ +  LD I+  N DGT+R
Sbjct: 2  TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG1214|consensus	1289		99.96
KOG1215|consensus	877		99.92
KOG1215|consensus	877		99.82
KOG1214|consensus	1289		99.38
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.06
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	99.02
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	98.88
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.33
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.23
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.8
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.74
PF12662	24	cEGF: Complement Clr-like EGF-like	97.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.35
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.24
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	96.95
KOG4499|consensus	310		96.63
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	96.59
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	96.4
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.11
smart00181	35	EGF Epidermal growth factor-like domain.	96.09
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	95.8
KOG1520|consensus	376		95.59
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	95.58
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.58
KOG4659|consensus	1899		95.43
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.0
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.87
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	94.86
cd00053	36	EGF Epidermal growth factor domain, found in epide	94.79
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	94.43
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.16
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.06
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.65
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	92.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	91.65
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	91.47
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	91.36
KOG4659|consensus	1899		90.37
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	88.39
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	86.0
COG3391	381	Uncharacterized conserved protein [Function unknow	85.4
KOG1520|consensus	376		85.06
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	84.92
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	84.78
COG3391	381	Uncharacterized conserved protein [Function unknow	83.92
KOG1219|consensus	4289		82.88
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	81.51
KOG1219|consensus	4289		81.14

>KOG1214|consensus

Probab=99.96  E-value=2.6e-29  Score=239.86  Aligned_cols=156  Identities=31%  Similarity=0.576  Sum_probs=133.7

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE------------------eEEEeeccc--
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ------------------DTLYWTDRQ--   60 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~------------------~~lfwtd~~--   60 (264)
                      |.|.+.++||.++|..|.|||||+..+.+||+|+.+++||++.|||+.|++                  |+||||||+  
T Consensus      1054 L~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe 1133 (1289)
T KOG1214|consen 1054 LEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE 1133 (1289)
T ss_pred             ccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeecccccc
Confidence            568999999999999999999999999999999999999999999999987                  899999995  


Q ss_pred             ---c---------ee-------------------------------------------EEeCCcccccceeeeeeCCEEE
Q psy17326         61 ---L---------NR-------------------------------------------VVAGSHYLLHPHSLTIFEDTLY   85 (264)
Q Consensus        61 ---~---------~~-------------------------------------------vl~~~~~l~~P~~l~v~~d~lY   85 (264)
                         |         +|                                           ++.+  .|.+||+|+-+++.+|
T Consensus      1134 nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~--~LqYPF~itsy~~~fY 1211 (1289)
T KOG1214|consen 1134 NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQN--NLQYPFSITSYADHFY 1211 (1289)
T ss_pred             CCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhh--cccCceeeeeccccce
Confidence               1         11                                           2222  4789999999999999


Q ss_pred             EEcCCCCeEEEEEccCCceeE-EEeccCCCceeEEEecccCCCccccccc--cCCcccceecCCCCCCCeeeecCCCeEE
Q psy17326         86 WTDRQLNRVLSAHKFRGKNQT-VVSHLISQPLSIHVHHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRV  162 (264)
Q Consensus        86 wtD~~~~~i~~~~k~~g~~~~-~i~~~~~~p~~i~v~~~~~qp~~~npC~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L  162 (264)
                      ||||+.++|.+++|+.++... .+.....+.|||..+- ...|.+++||+  |+||.||||+.   .++..|.||+..+.
T Consensus      1212 ~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~-~~Cp~gstpCSedNGGCqHLCLpg---qngavcecpdnvkv 1287 (1289)
T KOG1214|consen 1212 HTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVY-PYCPTGSTPCSEDNGGCQHLCLPG---QNGAVCECPDNVKV 1287 (1289)
T ss_pred             eeccccCceEEeeccccccccccccccccceEEEEecc-ccCCCCCCcccccCCcceeecccC---cCCccccCCcccee
Confidence            999999999999999887653 4556667799998773 45688999998  56999999975   36899999997653

>KOG1215|consensus

Probab=99.92  E-value=3.2e-24  Score=217.75  Aligned_cols=230  Identities=31%  Similarity=0.521  Sum_probs=175.0

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCC-eEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLD-FIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI   79 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~-~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v   79 (264)
                      |||+.+++++..++.||+||++|..++++||+|.... .|++++++|.+|++            +...  .+.|||++++
T Consensus       553 ~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~------------~~~~--~~~~p~~~~~  618 (877)
T KOG1215|consen  553 LDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRV------------VDSE--DLPHPFGLSV  618 (877)
T ss_pred             CCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEE------------eccc--cCCCceEEEE
Confidence            8999999999999999999999999999999999999 89999999999985            4444  4899999999


Q ss_pred             eCCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEe-cccCCCcccccccc--CCcccceecCCCCCCCeeeec
Q psy17326         80 FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVH-HPSLQPITRNDCVN--APCQQLCLLSPSSSTGYTCKC  156 (264)
Q Consensus        80 ~~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~-~~~~qp~~~npC~~--~~CshlCl~~p~~~~~~~C~C  156 (264)
                      |++++||+||....+.+.++..|.+...+......|..++++ +...||.+.|+|..  ++|+|+|++.|.   +.+|+|
T Consensus       619 ~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~---~~~c~c  695 (877)
T KOG1215|consen  619 FEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQ---GSTCAC  695 (877)
T ss_pred             ecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccCCCCCCcccccCCCCCeeeecCCC---CCeeeC
Confidence            999999999999999999988876612344566778877766 77778889999985  599999999984   339999


Q ss_pred             CCCeEEcC-CCCCCCCCccEEEEEeCCeEEEEEcCCCCCCCcc--eeEeeeC-------c--eeEEeeeCCCCCCCceEE
Q psy17326        157 IAGFRVTK-DGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETP--VLLVMKG-------S--QIVDVSLKPGDKSSGIIT  224 (264)
Q Consensus       157 p~G~~L~~-~~tC~~~~~~~ll~~~~~~i~~i~~~~~~~~~~~--~~~~~~~-------~--~~~~~~l~~~~~~~~~~~  224 (264)
                      |.|+.|.. +++|.. ...+++++.++.|..++.........|  .....+.       .  .......+....  .. +
T Consensus       696 ~~~~~l~~~~~~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  771 (877)
T KOG1215|consen  696 PEGYRLSPDGKSCSS-PEGYLLITSRTGIPCISLDSELSPDQPLEDGDTIDRLEYWTDVRVGVAAVSSQNCAPG--YD-L  771 (877)
T ss_pred             CCCCeecCCCCeecC-cccccccccccccceeecCcccCCCcccCCCcccccceecccccceeeEEEecCCCCc--cc-c
Confidence            99999988 568988 446899999999999987654332222  1111110       0  000011111110  11 2


Q ss_pred             EecCCCCcEEEEEECCCCEEEEEeCCC
Q psy17326        225 PVVGVENGLQVEFDKKAAMLYWLEGTK  251 (264)
Q Consensus       225 ~~~~~~~~~~id~D~~~~~iYW~D~~~  251 (264)
                      ...+......+.+|+..+.|||+..-.
T Consensus       772 ~~~~~~~~~~~~~~~~~~~l~~~~~~~  798 (877)
T KOG1215|consen  772 VGEGEPPPEGSAVDEAEDTLYWTCSAT  798 (877)
T ss_pred             ccccCCCCCCceeehhhcceEEEeecc
Confidence            333455667899999999999999643

>KOG1215|consensus

Probab=99.82  E-value=6.8e-20  Score=186.27  Aligned_cols=200  Identities=34%  Similarity=0.635  Sum_probs=165.7

Q ss_pred             CCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeC
Q psy17326          2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFE   81 (264)
Q Consensus         2 DGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~   81 (264)
                      ||+.++.++...+.||||++||+..+++||+|++.+.|+++++||+.|+                         +|++|+
T Consensus        24 dg~~~~~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~-------------------------~l~~~~   78 (877)
T KOG1215|consen   24 DGGERKILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRR-------------------------ALTLFE   78 (877)
T ss_pred             cCcceEEeeccceeCCCcceecchhheeeeccccCCceEEeccCCccce-------------------------eeeeec
Confidence            7888899999999999999999999999999999999999999999873                         689999


Q ss_pred             CEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccccC---CcccceecCCCCCCCeeeecCC
Q psy17326         82 DTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNA---PCQQLCLLSPSSSTGYTCKCIA  158 (264)
Q Consensus        82 d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~~~---~CshlCl~~p~~~~~~~C~Cp~  158 (264)
                      +.+||+|   +.|..++|.+|+..+.+......|+.++++++..||...++|...   +|+|+|+....- ..++|+|+.
T Consensus        79 ~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c-~~~~~~Cip  154 (877)
T KOG1215|consen   79 DGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSC-RTGSCKCIP  154 (877)
T ss_pred             cceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCCCcccccCCCCCccccCCCCCC-cCccccCCC
Confidence            9999999   678899999999998887765559999999999999999999864   899999997632 244899999


Q ss_pred             CeEEcCC-CCCCCCCccEEEEEeCCeEEEEEcCCCCCCCcceeEeeeCceeEEeeeCCCCCCCceEEEecCCCCcEEEEE
Q psy17326        159 GFRVTKD-GRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEF  237 (264)
Q Consensus       159 G~~L~~~-~tC~~~~~~~ll~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~id~  237 (264)
                      +..+..+ ..|.+...+.+++.....++...+                        +.     ....++.++.+..++++
T Consensus       155 ~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~------------------------~~-----~~~~~~~d~~~~~~~~~  205 (877)
T KOG1215|consen  155 GDWLCDGEADCPDGSDELNCAVRRCEPRGASL------------------------DC-----IVAIKVCDIQHDCADDY  205 (877)
T ss_pred             CceeCCCCCccccchhhhcccccccCcccccc------------------------cc-----ceeeeecCccccccccc
Confidence            9998774 589988776665544454555422                        11     34567778888999999


Q ss_pred             ECCCCEEEEEeCC-CeeeccCCC
Q psy17326        238 DKKAAMLYWLEGT-KKANEEDGG  259 (264)
Q Consensus       238 D~~~~~iYW~D~~-~~~~~~~~~  259 (264)
                      |...+.+||++.+ ....+.+|+
T Consensus       206 d~~~~~~~~~~~~~~~~~~c~g~  228 (877)
T KOG1215|consen  206 DESEGRIYWTDDSRIEVTRCDGS  228 (877)
T ss_pred             ccccCcccccCCcceeEEEecCC
Confidence            9999999999985 455555554

>KOG1214|consensus

Probab=99.38  E-value=5.6e-12  Score=122.07  Aligned_cols=114  Identities=23%  Similarity=0.443  Sum_probs=90.6

Q ss_pred             EEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE------------------eEEEeecccc-------
Q psy17326          7 STIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ------------------DTLYWTDRQL-------   61 (264)
Q Consensus         7 ~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~------------------~~lfwtd~~~-------   61 (264)
                      ++++.-.-.-|-||+.|-.++++||+|.....|.++.|+|...++                  .++||+|+.+       
T Consensus      1017 k~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~ 1096 (1289)
T KOG1214|consen 1017 KTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVAL 1096 (1289)
T ss_pred             hceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheee
Confidence            344444455689999999999999999999999999999998765                  5799999852       


Q ss_pred             -----eeEEeCCcccccceeeee--eCCEEEEEcCCCC--eEEEEEccCCceeEEEe-ccCCCceeEEEec
Q psy17326         62 -----NRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLN--RVLSAHKFRGKNQTVVS-HLISQPLSIHVHH  122 (264)
Q Consensus        62 -----~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~~--~i~~~~k~~g~~~~~i~-~~~~~p~~i~v~~  122 (264)
                           +++|... .|.+|-+|++  ++..||||||.+.  .|.++.. +|++++++. ..+.-|.|+++.-
T Consensus      1097 LdG~~rkvLf~t-dLVNPR~iv~D~~rgnLYwtDWnRenPkIets~m-DG~NrRilin~DigLPNGLtfdp 1165 (1289)
T KOG1214|consen 1097 LDGSERKVLFYT-DLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSM-DGENRRILINTDIGLPNGLTFDP 1165 (1289)
T ss_pred             cCCceeeEEEee-cccCcceEEeecccCceeeccccccCCcceeecc-CCccceEEeecccCCCCCceeCc
Confidence                 3344332 5889998887  8999999999986  6777775 688877654 4788899998763

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.06  E-value=6e-10  Score=70.81  Aligned_cols=40  Identities=28%  Similarity=0.567  Sum_probs=37.0

Q ss_pred             CeEEEEeCCCC-eEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326         27 RRVYFAESKLD-FIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus        27 ~rLYW~D~~~~-~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      ++|||+|...+ .|+++++||++|++            ++.+  .+.+|+||||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~------------vi~~--~l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRT------------VISD--DLQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEE------------EEES--STSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEE------------EEEC--CCCCcCEEEEC
Confidence            58999999999 99999999999998            8887  48999999985

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=99.02  E-value=8.3e-10  Score=69.70  Aligned_cols=42  Identities=40%  Similarity=0.703  Sum_probs=39.0

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR   49 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r   49 (264)
                      +++..++..|+|||+|+..++|||+|.....|++++++|+++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence            466779999999999999999999999999999999999874

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=98.88  E-value=1.3e-09  Score=66.68  Aligned_cols=31  Identities=32%  Similarity=1.058  Sum_probs=25.4

Q ss_pred             cCCcccceecCCCCCCCeeeecCCCeEEcCC-CCC
Q psy17326        135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKD-GRC  168 (264)
Q Consensus       135 ~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~-~tC  168 (264)
                      |++|+|+|++.|   ++++|+||.||.|.+| ++|
T Consensus         5 NGgC~h~C~~~~---g~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    5 NGGCSHICVNTP---GSYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             GGGSSSEEEEET---TSEEEE-STTEEE-TTSSSE
T ss_pred             CCCcCCCCccCC---CceEeECCCCCEECcCCCCC
Confidence            569999999996   5899999999999985 566

...

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.33  E-value=2.6e-06  Score=53.97  Aligned_cols=39  Identities=33%  Similarity=0.586  Sum_probs=32.1

Q ss_pred             CEEEEEcCCCC-eEEEEEccCCcee-EEEeccCCCceeEEEe
Q psy17326         82 DTLYWTDRQLN-RVLSAHKFRGKNQ-TVVSHLISQPLSIHVH  121 (264)
Q Consensus        82 d~lYwtD~~~~-~i~~~~k~~g~~~-~~i~~~~~~p~~i~v~  121 (264)
                      ++|||+|+..+ .|.+++. +|+++ .++...+..|.||+|+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~-dGs~~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANL-DGSNRRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEET-TSTSEEEEEESSTSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEEC-CCCCeEEEEECCCCCcCEEEEC
Confidence            58999999999 8888886 55554 5566689999999987

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.23  E-value=0.00016  Score=62.75  Aligned_cols=70  Identities=17%  Similarity=0.119  Sum_probs=55.0

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCCCCe
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQLNR   93 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~~~~   93 (264)
                      +|+|.+.|..+++|||+|...+.|.+.+.++...+.             +..    ..|.|+++.  ++.+|.++.... 
T Consensus         1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-------------~~~----~~~~G~~~~~~~g~l~v~~~~~~-   62 (246)
T PF08450_consen    1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-------------IDL----PGPNGMAFDRPDGRLYVADSGGI-   62 (246)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-------------EES----SSEEEEEEECTTSEEEEEETTCE-
T ss_pred             CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-------------Eec----CCCceEEEEccCCEEEEEEcCce-
Confidence            589999999999999999999999999999886653             332    349999986  789999997644 


Q ss_pred             EEEEEccCCce
Q psy17326         94 VLSAHKFRGKN  104 (264)
Q Consensus        94 i~~~~k~~g~~  104 (264)
                       ...+..+|+-
T Consensus        63 -~~~d~~~g~~   72 (246)
T PF08450_consen   63 -AVVDPDTGKV   72 (246)
T ss_dssp             -EEEETTTTEE
T ss_pred             -EEEecCCCcE
Confidence             3346555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.16  E-value=3.4e-05  Score=66.98  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=72.8

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCc-----eeEeEEEeecccceeEEeCCcccccceeeee-eC
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTS-----RQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FE   81 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~-----r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~   81 (264)
                      ..+..++..||||++++.++.||++|+..++|.+.+++...     +++            +..-......|=||++ -+
T Consensus       127 ~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~~~g~pDG~~vD~~  194 (246)
T PF08450_consen  127 TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV------------FIDFPGGPGYPDGLAVDSD  194 (246)
T ss_dssp             EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE------------EEE-SSSSCEEEEEEEBTT
T ss_pred             EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeee------------EEEcCCCCcCCCcceEcCC
Confidence            33445799999999999999999999999999999997433     333            3332212246999999 56


Q ss_pred             CEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEE
Q psy17326         82 DTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV  120 (264)
Q Consensus        82 d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v  120 (264)
                      +.||.+++..++|.+++.. |+-...+.....+|..+++
T Consensus       195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  195 GNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            7999999999999999985 7766655544445555554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.80  E-value=0.0003  Score=73.55  Aligned_cols=83  Identities=18%  Similarity=0.351  Sum_probs=65.6

Q ss_pred             EEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEe-CC----------cccccceee
Q psy17326          9 IISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVA-GS----------HYLLHPHSL   77 (264)
Q Consensus         9 iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~-~~----------~~l~~P~~l   77 (264)
                      ++.+.+..|.|+++|..+++||++|...++|.+.+.+|.-...            +-. +.          ..+..|.||
T Consensus       562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~------------ig~~g~~G~~dG~~~~a~f~~P~GI  629 (1057)
T PLN02919        562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQ------------IGSTGEEGLRDGSFEDATFNRPQGL  629 (1057)
T ss_pred             cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEE------------EccCCCcCCCCCchhccccCCCcEE
Confidence            4456889999999999999999999999999999999875433            211 00          125689999


Q ss_pred             eee--CCEEEEEcCCCCeEEEEEccCCc
Q psy17326         78 TIF--EDTLYWTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        78 ~v~--~d~lYwtD~~~~~i~~~~k~~g~  103 (264)
                      ++-  ++.||++|...+.|.+++..++.
T Consensus       630 avd~~gn~LYVaDt~n~~Ir~id~~~~~  657 (1057)
T PLN02919        630 AYNAKKNLLYVADTENHALREIDFVNET  657 (1057)
T ss_pred             EEeCCCCEEEEEeCCCceEEEEecCCCE
Confidence            995  57899999998888888865543

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.74  E-value=9e-05  Score=46.15  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=28.5

Q ss_pred             ecCCCCcEEEEEECCCCEEEEEeCCC-eee--ccCCCCC
Q psy17326        226 VVGVENGLQVEFDKKAAMLYWLEGTK-KAN--EEDGGNE  261 (264)
Q Consensus       226 ~~~~~~~~~id~D~~~~~iYW~D~~~-~~~--~~~~~~~  261 (264)
                      ..++..+.++++|+.+++|||+|... .|.  .++|+|+
T Consensus         5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence            34667788999999999999999765 444  5899874

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.46  E-value=9.2e-05  Score=40.89  Aligned_cols=22  Identities=27%  Similarity=0.887  Sum_probs=18.5

Q ss_pred             CeeeecCCCeEEcC-CCCCCCCC
Q psy17326        151 GYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       151 ~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      +|+|.|+.||+|.+ +++|.+..
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DId   23 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDID   23 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCC
Confidence            58999999999988 56898753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.35  E-value=0.0032  Score=65.98  Aligned_cols=78  Identities=13%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeC--------------Ccccccceeeee
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG--------------SHYLLHPHSLTI   79 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~--------------~~~l~~P~~l~v   79 (264)
                      +..|.||++|..++.||++|...++|.++++.+...++            +...              ...+.+|.+|++
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~t------------lag~G~~g~~~~gg~~~~~~~ln~P~gVa~  690 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRT------------LAGNGTKGSDYQGGKKGTSQVLNSPWDVCF  690 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEE------------EeccCcccCCCCCChhhhHhhcCCCeEEEE
Confidence            56899999999889999999999999999998765554            2110              012568999999


Q ss_pred             e--CCEEEEEcCCCCeEEEEEccCCc
Q psy17326         80 F--EDTLYWTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        80 ~--~d~lYwtD~~~~~i~~~~k~~g~  103 (264)
                      .  ++.||++|...+.|...+..+|.
T Consensus       691 dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        691 EPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             ecCCCeEEEEECCCCeEEEEECCCCe
Confidence            5  68999999999999988876654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.24  E-value=0.004  Score=56.44  Aligned_cols=88  Identities=20%  Similarity=0.295  Sum_probs=60.4

Q ss_pred             CcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC---CC--ceeEeEEEeecccceeEEeCCcccccceeeee
Q psy17326          5 SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD---GT--SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI   79 (264)
Q Consensus         5 ~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld---G~--~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v   79 (264)
                      ..+.++...+..||||++++.++.||++|+...+|.+.+++   |.  +++.   |        +... ..-..|=|+++
T Consensus       153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~---~--------~~~~-~~~G~PDG~~v  220 (307)
T COG3386         153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG---F--------VDFD-EEPGLPDGMAV  220 (307)
T ss_pred             CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce---E--------EEcc-CCCCCCCceEE
Confidence            44556666799999999999999999999999999999998   32  2221   0        2222 12368999999


Q ss_pred             eCCEEEE--EcCCCCeEEEEEccCCcee
Q psy17326         80 FEDTLYW--TDRQLNRVLSAHKFRGKNQ  105 (264)
Q Consensus        80 ~~d~lYw--tD~~~~~i~~~~k~~g~~~  105 (264)
                      -.+-.||  .-|....|.+.+.. |+..
T Consensus       221 DadG~lw~~a~~~g~~v~~~~pd-G~l~  247 (307)
T COG3386         221 DADGNLWVAAVWGGGRVVRFNPD-GKLL  247 (307)
T ss_pred             eCCCCEEEecccCCceEEEECCC-CcEE
Confidence            6655555  44443366666654 5433

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=96.95  E-value=0.0056  Score=45.19  Aligned_cols=73  Identities=26%  Similarity=0.353  Sum_probs=42.6

Q ss_pred             cEEEEeCCCCeEEEEeCCCCeEEEEecCCC--------ceeEeEEEeecccce--eEEeCCcccccceeeee--eCCEEE
Q psy17326         18 NGLTLDIATRRVYFAESKLDFIDFCNYDGT--------SRQQDTLYWTDRQLN--RVVAGSHYLLHPHSLTI--FEDTLY   85 (264)
Q Consensus        18 ~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~--------~r~~~~lfwtd~~~~--~vl~~~~~l~~P~~l~v--~~d~lY   85 (264)
                      |+|+|+..++.|||+|+...      ++-.        .+..|+|+.=|...+  +|+..  .|..|.|+++  -+++|+
T Consensus         1 ndldv~~~~g~vYfTdsS~~------~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~--~L~fpNGVals~d~~~vl   72 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSR------YDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD--GLYFPNGVALSPDESFVL   72 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--------TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--EESSEEEEEE-TTSSEEE
T ss_pred             CceeEecCCCEEEEEeCccc------cCccceeeeeecCCCCcCEEEEECCCCeEEEehh--CCCccCeEEEcCCCCEEE
Confidence            58999998899999999642      1111        011144444333321  13433  3899999999  456999


Q ss_pred             EEcCCCCeEEEEE
Q psy17326         86 WTDRQLNRVLSAH   98 (264)
Q Consensus        86 wtD~~~~~i~~~~   98 (264)
                      .++..+.+|.+.-
T Consensus        73 v~Et~~~Ri~ryw   85 (89)
T PF03088_consen   73 VAETGRYRILRYW   85 (89)
T ss_dssp             EEEGGGTEEEEEE
T ss_pred             EEeccCceEEEEE
Confidence            9998888887654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4499|consensus

Probab=96.63  E-value=0.035  Score=48.19  Aligned_cols=88  Identities=25%  Similarity=0.291  Sum_probs=69.7

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCC-----CceeEeEEEeecccceeEEeC--C--cccccceeee
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDG-----TSRQQDTLYWTDRQLNRVVAG--S--HYLLHPHSLT   78 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG-----~~r~~~~lfwtd~~~~~vl~~--~--~~l~~P~~l~   78 (264)
                      .++.+.+.-||||+-|...+..|.+|+..-.|..-+||-     +||++            ++.-  +  ..-.-|=||+
T Consensus       151 ~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~------------i~dlrk~~~~e~~~PDGm~  218 (310)
T KOG4499|consen  151 ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKV------------IFDLRKSQPFESLEPDGMT  218 (310)
T ss_pred             eeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcce------------eEEeccCCCcCCCCCCcce
Confidence            345568889999999999999999999999998888763     46776            4421  1  1124688999


Q ss_pred             e-eCCEEEEEcCCCCeEEEEEccCCceeEE
Q psy17326         79 I-FEDTLYWTDRQLNRVLSAHKFRGKNQTV  107 (264)
Q Consensus        79 v-~~d~lYwtD~~~~~i~~~~k~~g~~~~~  107 (264)
                      + -++.||-+-|...+|++++..+|+-...
T Consensus       219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e  248 (310)
T KOG4499|consen  219 IDTEGNLYVATFNGGTVQKVDPTTGKILLE  248 (310)
T ss_pred             EccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence            8 6789999999999999999999986543

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=96.59  E-value=0.0017  Score=40.85  Aligned_cols=35  Identities=23%  Similarity=0.862  Sum_probs=26.2

Q ss_pred             ccccc--CCcc--cceecCCCCCCCeeeecCCCeEEcC-CCCC
Q psy17326        131 NDCVN--APCQ--QLCLLSPSSSTGYTCKCIAGFRVTK-DGRC  168 (264)
Q Consensus       131 npC~~--~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC  168 (264)
                      |+|..  +.|.  +.|+..+   ++|+|.|+.||.+.. +++|
T Consensus         3 dEC~~~~~~C~~~~~C~N~~---Gsy~C~C~~Gy~~~~~~~~C   42 (42)
T PF07645_consen    3 DECAEGPHNCPENGTCVNTE---GSYSCSCPPGYELNDDGTTC   42 (42)
T ss_dssp             STTTTTSSSSSTTSEEEEET---TEEEEEESTTEEECTTSSEE
T ss_pred             cccCCCCCcCCCCCEEEcCC---CCEEeeCCCCcEECCCCCcC
Confidence            56764  3576  7999986   689999999999765 3344

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=96.40  E-value=0.0033  Score=37.36  Aligned_cols=32  Identities=22%  Similarity=0.602  Sum_probs=24.5

Q ss_pred             cccCCcccceecCCCCCCCeeeecCCCeEEcCCCCC
Q psy17326        133 CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC  168 (264)
Q Consensus       133 C~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC  168 (264)
                      |....|.+.|-+..    ...|.||+||.|.++.-|
T Consensus         3 Cn~t~CpA~CDpn~----~~~C~CPeGyIlde~~~c   34 (34)
T PF09064_consen    3 CNQTECPADCDPNS----PGQCFCPEGYILDEGSMC   34 (34)
T ss_pred             cccccCCCccCCCC----CCceeCCCceEecCCccC
Confidence            55667888998863    579999999999765433

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.11  E-value=0.015  Score=33.25  Aligned_cols=27  Identities=22%  Similarity=0.543  Sum_probs=23.5

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCCCeEEE
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKLDFIDF   41 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~   41 (264)
                      +..|.||++| .++.||-+|...++|..
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence            4689999999 78999999998888753

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.09  E-value=0.0069  Score=35.99  Aligned_cols=29  Identities=34%  Similarity=1.072  Sum_probs=22.5

Q ss_pred             cccc-CCccc-ceecCCCCCCCeeeecCCCeEEc
Q psy17326        132 DCVN-APCQQ-LCLLSPSSSTGYTCKCIAGFRVT  163 (264)
Q Consensus       132 pC~~-~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~  163 (264)
                      +|.. +.|.+ .|+..+   +++.|.|+.||.+.
T Consensus         1 ~C~~~~~C~~~~C~~~~---~~~~C~C~~g~~g~   31 (35)
T smart00181        1 ECASGGPCSNGTCINTP---GSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCcCCCCCCEEECCC---CCeEeECCCCCccC
Confidence            3555 57777 899874   68999999999763

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=95.80  E-value=0.012  Score=35.56  Aligned_cols=33  Identities=30%  Similarity=1.009  Sum_probs=23.8

Q ss_pred             ccccc-CCccc--ceecCCCCCCCeeeecCCCeEEcCCCCC
Q psy17326        131 NDCVN-APCQQ--LCLLSPSSSTGYTCKCIAGFRVTKDGRC  168 (264)
Q Consensus       131 npC~~-~~Csh--lCl~~p~~~~~~~C~Cp~G~~L~~~~tC  168 (264)
                      ++|.. ..|.+  .|+..+   +++.|.|+.||.  .+.+|
T Consensus         3 ~~C~~~~~C~~~~~C~~~~---g~~~C~C~~g~~--~g~~C   38 (39)
T smart00179        3 DECASGNPCQNGGTCVNTV---GSYRCECPPGYT--DGRNC   38 (39)
T ss_pred             ccCcCCCCcCCCCEeECCC---CCeEeECCCCCc--cCCcC
Confidence            45655 56765  899775   589999999997  34456

>KOG1520|consensus

Probab=95.59  E-value=0.038  Score=50.89  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=44.9

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC--cccccceeeee-eCCEEEEEcCCC
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS--HYLLHPHSLTI-FEDTLYWTDRQL   91 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~--~~l~~P~~l~v-~~d~lYwtD~~~   91 (264)
                      ++|-||+.|-.++.||-+|++.+ +..++..|..-+.            +....  ....-.-++++ -++.|||||..+
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~------------l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSs  181 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAEL------------LADEAEGKPFKFLNDLDIDPEGVVYFTDSSS  181 (376)
T ss_pred             CCcceEEeccCCCeEEEEeccee-eEEECCCCCccee------------ccccccCeeeeecCceeEcCCCeEEEecccc
Confidence            78999999999999999999887 5667777766432            21110  01222334555 478999999886


Q ss_pred             C
Q psy17326         92 N   92 (264)
Q Consensus        92 ~   92 (264)
                      +
T Consensus       182 k  182 (376)
T KOG1520|consen  182 K  182 (376)
T ss_pred             c
Confidence            3

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=95.58  E-value=0.0088  Score=51.43  Aligned_cols=33  Identities=33%  Similarity=0.934  Sum_probs=26.7

Q ss_pred             ccccc--cCCcccceecCCCCCCCeeeecCCCeEEcCC
Q psy17326        130 RNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKD  165 (264)
Q Consensus       130 ~npC~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~  165 (264)
                      .++|.  ++.|.|.|...+   ++|.|+|+.||.|.++
T Consensus       187 ~~~C~~~~~~c~~~C~~~~---g~~~c~c~~g~~~~~~  221 (224)
T cd01475         187 PDLCATLSHVCQQVCISTP---GSYLCACTEGYALLED  221 (224)
T ss_pred             chhhcCCCCCccceEEcCC---CCEEeECCCCccCCCC
Confidence            45675  358999999875   5899999999998764

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.58  E-value=1.5  Score=40.54  Aligned_cols=72  Identities=22%  Similarity=0.215  Sum_probs=50.3

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCC-----------C-CeEEEEec---CCCc-eeEeEEEeecccceeEEeCCccccccee
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESK-----------L-DFIDFCNY---DGTS-RQQDTLYWTDRQLNRVVAGSHYLLHPHS   76 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~-----------~-~~Ie~~~l---dG~~-r~~~~lfwtd~~~~~vl~~~~~l~~P~~   76 (264)
                      .+..|.+|++|.. ++||-++..           . ++|....-   ||.- ..+            ++..  .+..|.|
T Consensus        12 ~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~------------vfa~--~l~~p~G   76 (367)
T TIGR02604        12 LLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN------------VFAE--ELSMVTG   76 (367)
T ss_pred             ccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE------------Eeec--CCCCccc
Confidence            5999999999974 789999852           2 37766654   4542 333            5554  3789999


Q ss_pred             eeeeCCEEEEEcCCCCeEEEEEccC
Q psy17326         77 LTIFEDTLYWTDRQLNRVLSAHKFR  101 (264)
Q Consensus        77 l~v~~d~lYwtD~~~~~i~~~~k~~  101 (264)
                      |++..+-||-++..  .|.++....
T Consensus        77 i~~~~~GlyV~~~~--~i~~~~d~~   99 (367)
T TIGR02604        77 LAVAVGGVYVATPP--DILFLRDKD   99 (367)
T ss_pred             eeEecCCEEEeCCC--eEEEEeCCC
Confidence            99976669998744  577775433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4659|consensus

Probab=95.43  E-value=1.3  Score=46.99  Aligned_cols=75  Identities=16%  Similarity=0.249  Sum_probs=59.2

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQ   90 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~   90 (264)
                      .|..|.+||.-+ .+.||-.|.  ..|.++..||.-+.+            +--+.....|-+-||+  ..+.||-+|..
T Consensus       363 ~L~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v~tI------------l~L~~t~~sh~Yy~AvsPvdgtlyvSdp~  427 (1899)
T KOG4659|consen  363 SLFAPVALAYAP-DGSLIVGDF--NYIRRISQDGQVSTI------------LTLGLTDTSHSYYIAVSPVDGTLYVSDPL  427 (1899)
T ss_pred             eeeceeeEEEcC-CCcEEEccc--hheeeecCCCceEEE------------EEecCCCccceeEEEecCcCceEEecCCC
Confidence            567899998876 578998885  789999999988775            3222234578888888  78999999999


Q ss_pred             CCeEEEEEccCC
Q psy17326         91 LNRVLSAHKFRG  102 (264)
Q Consensus        91 ~~~i~~~~k~~g  102 (264)
                      ++.|+|+....+
T Consensus       428 s~qv~rv~sl~~  439 (1899)
T KOG4659|consen  428 SKQVWRVSSLEP  439 (1899)
T ss_pred             cceEEEeccCCc
Confidence            999999976554

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.00  E-value=0.44  Score=43.17  Aligned_cols=99  Identities=11%  Similarity=0.067  Sum_probs=68.9

Q ss_pred             CCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC-CCceeEeEEEeecccceeEEeCCcccccceeeeeeCCEEEEEcCC
Q psy17326         12 TKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD-GTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQ   90 (264)
Q Consensus        12 ~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld-G~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lYwtD~~   90 (264)
                      +++..|++--..  +++||..|++.+.|..++.+ |....+             ..-   -..|.||++.+++++-+=.+
T Consensus       200 ~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~V-------------a~v---pG~~rGL~f~G~llvVgmSk  261 (335)
T TIGR03032       200 SGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPV-------------AFL---PGFTRGLAFAGDFAFVGLSK  261 (335)
T ss_pred             cCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEE-------------EEC---CCCCcccceeCCEEEEEecc
Confidence            477777776554  79999999999999999998 665543             221   25778888888877776544


Q ss_pred             CC-------------------eEEEEEccCCceeEEEe--ccCCCceeEEEecccCCCc
Q psy17326         91 LN-------------------RVLSAHKFRGKNQTVVS--HLISQPLSIHVHHPSLQPI  128 (264)
Q Consensus        91 ~~-------------------~i~~~~k~~g~~~~~i~--~~~~~p~~i~v~~~~~qp~  128 (264)
                      .+                   +|..+|..+|.-...+.  ......|++.|.-..++|.
T Consensus       262 ~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P~  320 (335)
T TIGR03032       262 LRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRPE  320 (335)
T ss_pred             ccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCcc
Confidence            32                   35556766776555433  3467788888886667774

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.87  E-value=0.28  Score=44.47  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=36.6

Q ss_pred             cEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC-CCce
Q psy17326          6 RSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD-GTSR   49 (264)
Q Consensus         6 r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld-G~~r   49 (264)
                      ...++.....+.+|-+-|...+.|||+|...++|.+.+.. |..+
T Consensus        16 ~~~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~   60 (307)
T COG3386          16 PVTLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKR   60 (307)
T ss_pred             ceeEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceE
Confidence            3456667888999999999999999999999999999986 5444

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=94.86  E-value=0.083  Score=38.69  Aligned_cols=42  Identities=17%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             CCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEec
Q psy17326          2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNY   44 (264)
Q Consensus         2 DGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~l   44 (264)
                      ||+..+++ .+++..||||++|+..+.||-++...+.|.....
T Consensus        42 d~~~~~~v-a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   42 DGKEVKVV-ASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             eCCEeEEe-eccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            56665554 4589999999999999999999998888876653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=94.79  E-value=0.035  Score=32.44  Aligned_cols=26  Identities=31%  Similarity=0.911  Sum_probs=19.5

Q ss_pred             cCCcc--cceecCCCCCCCeeeecCCCeEEc
Q psy17326        135 NAPCQ--QLCLLSPSSSTGYTCKCIAGFRVT  163 (264)
Q Consensus       135 ~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~  163 (264)
                      ...|.  +.|+..+   ++++|.|+.||...
T Consensus         5 ~~~C~~~~~C~~~~---~~~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTP---GSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCC---CCeEeECCCCCccc
Confidence            34555  6888875   57999999999654

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=94.43  E-value=0.031  Score=32.94  Aligned_cols=26  Identities=42%  Similarity=1.023  Sum_probs=19.0

Q ss_pred             cccccCCcccceecCCCCCCCeeeecCCCeE
Q psy17326        131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFR  161 (264)
Q Consensus       131 npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~  161 (264)
                      +||.+++   .|+..+  .++|.|.|+.||+
T Consensus         4 ~~C~n~g---~C~~~~--~~~y~C~C~~G~~   29 (32)
T PF00008_consen    4 NPCQNGG---TCIDLP--GGGYTCECPPGYT   29 (32)
T ss_dssp             TSSTTTE---EEEEES--TSEEEEEEBTTEE
T ss_pred             CcCCCCe---EEEeCC--CCCEEeECCCCCc
Confidence            4666542   677765  2589999999996

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.16  E-value=0.91  Score=41.97  Aligned_cols=99  Identities=22%  Similarity=0.311  Sum_probs=64.1

Q ss_pred             cEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEE-ecCCC-----ceeEeEEEeecccceeEEeCCcc-----cccc
Q psy17326          6 RSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFC-NYDGT-----SRQQDTLYWTDRQLNRVVAGSHY-----LLHP   74 (264)
Q Consensus         6 r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~-~ldG~-----~r~~~~lfwtd~~~~~vl~~~~~-----l~~P   74 (264)
                      +.+++-+++..|+||+++.. + ||-++.  ..|.+. +.+|.     .+++            ++..-..     ...+
T Consensus        63 ~~~vfa~~l~~p~Gi~~~~~-G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~------------l~~~~~~~~~~~~~~~  126 (367)
T TIGR02604        63 KSNVFAEELSMVTGLAVAVG-G-VYVATP--PDILFLRDKDGDDKADGEREV------------LLSGFGGQINNHHHSL  126 (367)
T ss_pred             eeEEeecCCCCccceeEecC-C-EEEeCC--CeEEEEeCCCCCCCCCCccEE------------EEEccCCCCCcccccc
Confidence            34455567899999999864 4 998874  457666 44442     3333            4432111     1237


Q ss_pred             eeeee-eCCEEEEEcCCC-------------------CeEEEEEccCCceeEEEeccCCCceeEEEe
Q psy17326         75 HSLTI-FEDTLYWTDRQL-------------------NRVLSAHKFRGKNQTVVSHLISQPLSIHVH  121 (264)
Q Consensus        75 ~~l~v-~~d~lYwtD~~~-------------------~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~  121 (264)
                      .++++ -.++||+++...                   +.|++++.. |+..+++..++..|.++.+-
T Consensus       127 ~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd-g~~~e~~a~G~rnp~Gl~~d  192 (367)
T TIGR02604       127 NSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD-GGKLRVVAHGFQNPYGHSVD  192 (367)
T ss_pred             cCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC-CCeEEEEecCcCCCccceEC
Confidence            78888 455999988732                   357788764 55567777888889999764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.22  E-value=0.63  Score=41.72  Aligned_cols=63  Identities=19%  Similarity=0.318  Sum_probs=48.7

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCC----CceeEeEEEeecccceeEEeCCcccccceeeeeeC---CEEEEE
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDG----TSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFE---DTLYWT   87 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG----~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~---d~lYwt   87 (264)
                      ..-.|+++|. ++.||+++.....|.+.+.++    .+.++            +...+..+..|-+|++.+   ++||..
T Consensus       186 ~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~------------l~~d~~~l~~pd~~~i~~~~~g~L~v~  252 (287)
T PF03022_consen  186 SQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEI------------LAQDPRTLQWPDGLKIDPEGDGYLWVL  252 (287)
T ss_dssp             -SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEE------------EEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred             CCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchhe------------eEEcCceeeccceeeeccccCceEEEE
Confidence            4568999999 899999999999999999998    45555            666654489999999977   899987


Q ss_pred             cCC
Q psy17326         88 DRQ   90 (264)
Q Consensus        88 D~~   90 (264)
                      ..+
T Consensus       253 snr  255 (287)
T PF03022_consen  253 SNR  255 (287)
T ss_dssp             E-S
T ss_pred             ECc
Confidence            644

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.06  E-value=6  Score=36.04  Aligned_cols=54  Identities=15%  Similarity=0.078  Sum_probs=38.5

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC----cccccceeeeeeC
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS----HYLLHPHSLTIFE   81 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~----~~l~~P~~l~v~~   81 (264)
                      |..|.+|++.+. ++||.++. .++|...+-+|.....            +..-.    .....+.+|++..
T Consensus         1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~------------v~~~~~v~~~~~~gllgia~~p   58 (331)
T PF07995_consen    1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTP------------VADLPEVFADGERGLLGIAFHP   58 (331)
T ss_dssp             ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEE------------EEE-TTTBTSTTBSEEEEEE-T
T ss_pred             CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcce------------ecccccccccccCCcccceecc
Confidence            467999999986 79999988 8999999988887232            22211    1235679999866

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.65  E-value=0.21  Score=36.79  Aligned_cols=43  Identities=26%  Similarity=0.323  Sum_probs=35.8

Q ss_pred             CcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCC
Q psy17326          5 SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGT   47 (264)
Q Consensus         5 ~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~   47 (264)
                      ....++-.+|..|||+++...+..|..++....+|.+.-+.|.
T Consensus        47 ~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~Gp   89 (89)
T PF03088_consen   47 KETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWLKGP   89 (89)
T ss_dssp             TEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSST
T ss_pred             CeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEEeCC
Confidence            3444555689999999999999999999999999999988874

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=92.39  E-value=0.18  Score=29.68  Aligned_cols=29  Identities=31%  Similarity=0.948  Sum_probs=20.9

Q ss_pred             ccccc-CCcc--cceecCCCCCCCeeeecCCCeEE
Q psy17326        131 NDCVN-APCQ--QLCLLSPSSSTGYTCKCIAGFRV  162 (264)
Q Consensus       131 npC~~-~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L  162 (264)
                      ++|.. ..|.  ..|...+   +++.|.|+.||..
T Consensus         3 ~~C~~~~~C~~~~~C~~~~---~~~~C~C~~g~~g   34 (38)
T cd00054           3 DECASGNPCQNGGTCVNTV---GSYRCSCPPGYTG   34 (38)
T ss_pred             ccCCCCCCcCCCCEeECCC---CCeEeECCCCCcC
Confidence            45654 4663  5788765   5799999999863

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=91.65  E-value=4.1  Score=37.21  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=55.7

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCCCCe
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNR   93 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~~~   93 (264)
                      +|.+|++++..+.||-+....+.|...++|+...+...+       . .+..  .-.+|.++++  -+++||-+....+.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~-------~-~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV-------Q-TVPT--GGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE-------E-EEEE--SSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE-------E-EEeC--CCCCccEEEEeCCCCEEEEEecCCCe
Confidence            799999999999999999999999999997553211000       0 1111  1357988888  78899999999886


Q ss_pred             EE--EEEccCCc
Q psy17326         94 VL--SAHKFRGK  103 (264)
Q Consensus        94 i~--~~~k~~g~  103 (264)
                      |.  +++..+|.
T Consensus       316 v~vf~~d~~tG~  327 (345)
T PF10282_consen  316 VSVFDIDPDTGK  327 (345)
T ss_dssp             EEEEEEETTTTE
T ss_pred             EEEEEEeCCCCc
Confidence            65  45555665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.55  E-value=11  Score=34.43  Aligned_cols=225  Identities=14%  Similarity=0.152  Sum_probs=105.6

Q ss_pred             CCCCccEEEEeC---CCCeEEEEeCCC--------CeEEEEecCCCc-----eeEeEEEeecccceeEEeCC----cccc
Q psy17326         13 KIYWPNGLTLDI---ATRRVYFAESKL--------DFIDFCNYDGTS-----RQQDTLYWTDRQLNRVVAGS----HYLL   72 (264)
Q Consensus        13 ~l~~P~gLaiD~---~~~rLYW~D~~~--------~~Ie~~~ldG~~-----r~~~~lfwtd~~~~~vl~~~----~~l~   72 (264)
                      ...-+.|||+|+   .++.||.+-...        .+|.+..++...     .++            ++...    ...+
T Consensus        47 ~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~------------l~~~~p~~~~~~H  114 (331)
T PF07995_consen   47 GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEV------------LVTGLPDTSSGNH  114 (331)
T ss_dssp             TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEE------------EEEEEES-CSSSS
T ss_pred             ccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceE------------EEEEeCCCCCCCC
Confidence            345678999999   467888766532        467777776551     222            33221    1123


Q ss_pred             cceeeee-eCCEEEEEcCC-------------CCeEEEEEccCCc-------------eeEEEeccCCCceeEEEecccC
Q psy17326         73 HPHSLTI-FEDTLYWTDRQ-------------LNRVLSAHKFRGK-------------NQTVVSHLISQPLSIHVHHPSL  125 (264)
Q Consensus        73 ~P~~l~v-~~d~lYwtD~~-------------~~~i~~~~k~~g~-------------~~~~i~~~~~~p~~i~v~~~~~  125 (264)
                      +-.+|++ -.++||++--.             ..+|.|++.. |+             ..++...++..|++++.. +..
T Consensus       115 ~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d-~~t  192 (331)
T PF07995_consen  115 NGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFD-PNT  192 (331)
T ss_dssp             -EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEE-TTT
T ss_pred             CCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCCCCCccccCCCceEEEEEeCCCccccEEEE-CCC
Confidence            3455676 35799997322             3478899863 43             456777788899999765 321


Q ss_pred             CCccccccccCCc---ccceecCCCCCCCee-ee---cCCCeEEcCCCCCCCCCccEEEEEeCCeEEEEEcCCCCCCC-c
Q psy17326        126 QPITRNDCVNAPC---QQLCLLSPSSSTGYT-CK---CIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDKKE-T  197 (264)
Q Consensus       126 qp~~~npC~~~~C---shlCl~~p~~~~~~~-C~---Cp~G~~L~~~~tC~~~~~~~ll~~~~~~i~~i~~~~~~~~~-~  197 (264)
                         +.=-+..++-   ..|.+..+....|+- |.   +..|........|.....|.+.+.......++..-.+..-| +
T Consensus       193 ---g~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~  269 (331)
T PF07995_consen  193 ---GRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEY  269 (331)
T ss_dssp             ---TEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGG
T ss_pred             ---CcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccc
Confidence               1111222111   345555443211211 21   22222221122333333456666555555555432222211 1


Q ss_pred             -ceeEeee--CceeEEeeeCCCCCCCceEEEecCCC-CcEEEEEECCCCEEEEEeC-CCeeec
Q psy17326        198 -PVLLVMK--GSQIVDVSLKPGDKSSGIITPVVGVE-NGLQVEFDKKAAMLYWLEG-TKKANE  255 (264)
Q Consensus       198 -~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~id~D~~~~~iYW~D~-~~~~~~  255 (264)
                       -..++.+  +.++....++...........+.+.. .+++|++++. +.||-+|. ..+|.|
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD-G~Lyv~~d~~G~iyR  331 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD-GALYVSDDSDGKIYR  331 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT-SEEEEEE-TTTTEEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC-CeEEEEECCCCeEeC
Confidence             1244444  45677667654321111222234555 6789999996 67888875 456654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=91.47  E-value=11  Score=34.38  Aligned_cols=79  Identities=14%  Similarity=0.057  Sum_probs=53.9

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeC--CEEEEEcCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFE--DTLYWTDRQ   90 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~--d~lYwtD~~   90 (264)
                      .-..|..+.+++.++.||-+|.+.++|...+++........        ...+.-. .-..|..|++..  .++|.....
T Consensus       142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~--------~~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~  212 (345)
T PF10282_consen  142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP--------VDSIKVP-PGSGPRHLAFSPDGKYAYVVNEL  212 (345)
T ss_dssp             SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE--------EEEEECS-TTSSEEEEEE-TTSSEEEEEETT
T ss_pred             ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE--------eeccccc-cCCCCcEEEEcCCcCEEEEecCC
Confidence            34678999999999999999999999999999876521100        0012111 235788888854  499999988


Q ss_pred             CCeEEEEEcc
Q psy17326         91 LNRVLSAHKF  100 (264)
Q Consensus        91 ~~~i~~~~k~  100 (264)
                      .+.|...+..
T Consensus       213 s~~v~v~~~~  222 (345)
T PF10282_consen  213 SNTVSVFDYD  222 (345)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCcEEEEeec
Confidence            8877766544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=91.36  E-value=5  Score=34.43  Aligned_cols=89  Identities=15%  Similarity=0.030  Sum_probs=60.5

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCCCCe
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNR   93 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~~~   93 (264)
                      .|.++++++..+.+|.+....++|...+++......            .+..   -..|+++++  -+.+||-+....+.
T Consensus       208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~------------~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~  272 (300)
T TIGR03866       208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD------------YLLV---GQRVWQLAFTPDEKYLLTTNGVSND  272 (300)
T ss_pred             CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE------------EEEe---CCCcceEEECCCCCEEEEEcCCCCe
Confidence            567888998888888887777778877775433222            2221   134677777  55688877666677


Q ss_pred             EEEEEccCCceeEEEeccCCCceeEEE
Q psy17326         94 VLSAHKFRGKNQTVVSHLISQPLSIHV  120 (264)
Q Consensus        94 i~~~~k~~g~~~~~i~~~~~~p~~i~v  120 (264)
                      |...+..+++..+.+..+ ..|.+|.+
T Consensus       273 i~v~d~~~~~~~~~~~~~-~~~~~~~~  298 (300)
T TIGR03866       273 VSVIDVAALKVIKSIKVG-RLPWGVVV  298 (300)
T ss_pred             EEEEECCCCcEEEEEEcc-cccceeEe
Confidence            888888777766655443 67888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4659|consensus

Probab=90.37  E-value=0.53  Score=49.61  Aligned_cols=85  Identities=18%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             eCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE------------------------------------eEE
Q psy17326         11 STKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ------------------------------------DTL   54 (264)
Q Consensus        11 ~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~------------------------------------~~l   54 (264)
                      +-.+.||+.||||+..+.||-.|.  +.|.+++.++.-|..                                    |.|
T Consensus       529 ~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l  606 (1899)
T KOG4659|consen  529 DLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL  606 (1899)
T ss_pred             heeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Confidence            346789999999999999999995  678888877655532                                    788


Q ss_pred             Eeeccc---ce-----------------------------------eEEeCCcccccceeeee-eCCEEEEEcCCCCeEE
Q psy17326         55 YWTDRQ---LN-----------------------------------RVVAGSHYLLHPHSLTI-FEDTLYWTDRQLNRVL   95 (264)
Q Consensus        55 fwtd~~---~~-----------------------------------~vl~~~~~l~~P~~l~v-~~d~lYwtD~~~~~i~   95 (264)
                      |-++..   ++                                   .+.+.+-.+..|++|+| -.+.+|-+|...-+|.
T Consensus       607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr  686 (1899)
T KOG4659|consen  607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR  686 (1899)
T ss_pred             EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh
Confidence            988753   11                                   12222234678999999 5679999999877665


Q ss_pred             EE
Q psy17326         96 SA   97 (264)
Q Consensus        96 ~~   97 (264)
                      .+
T Consensus       687 ~V  688 (1899)
T KOG4659|consen  687 KV  688 (1899)
T ss_pred             hh
Confidence            43

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=88.39  E-value=2.9  Score=36.77  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC-----cccccceeeee-eCCEEEE
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS-----HYLLHPHSLTI-FEDTLYW   86 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~-----~~l~~P~~l~v-~~d~lYw   86 (264)
                      .+..|.||++|+.++.||-.....+.|...+.+|.-...  +         -+...     ..+.+|-|||+ -++.||-
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~--~---------~L~~g~~gl~~~~~QpEGIa~d~~G~LYI  237 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSS--L---------SLDRGFHGLSKDIPQPEGIAFDPDGNLYI  237 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEE--E---------E-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEE--E---------EeCCcccCcccccCCccEEEECCCCCEEE
Confidence            456799999999999999999999999999999985543  0         22221     13578999999 5568887


Q ss_pred             EcC
Q psy17326         87 TDR   89 (264)
Q Consensus        87 tD~   89 (264)
                      +..
T Consensus       238 vsE  240 (248)
T PF06977_consen  238 VSE  240 (248)
T ss_dssp             EET
T ss_pred             EcC
Confidence            764

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=86.00  E-value=0.72  Score=21.52  Aligned_cols=9  Identities=44%  Similarity=1.283  Sum_probs=7.0

Q ss_pred             eeecCCCeE
Q psy17326        153 TCKCIAGFR  161 (264)
Q Consensus       153 ~C~Cp~G~~  161 (264)
                      +|.|+.||+
T Consensus         1 ~C~C~~G~~    9 (13)
T PF12661_consen    1 TCQCPPGWT    9 (13)
T ss_dssp             EEEE-TTEE
T ss_pred             CccCcCCCc
Confidence            599999996

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=85.40  E-value=14  Score=34.33  Aligned_cols=95  Identities=18%  Similarity=0.197  Sum_probs=64.5

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCCC--
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQL--   91 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~--   91 (264)
                      .|.++++|+...++|=+|...++|...+..+.....    +      +..........|.++++  -+.++|-++..+  
T Consensus       161 ~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~------~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         161 TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----G------SVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----c------ccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence            699999999999999999999999999977665430    0      00000012467888888  677899999988  


Q ss_pred             CeEEEEEccCCceeEE--EeccCCCceeEEEe
Q psy17326         92 NRVLSAHKFRGKNQTV--VSHLISQPLSIHVH  121 (264)
Q Consensus        92 ~~i~~~~k~~g~~~~~--i~~~~~~p~~i~v~  121 (264)
                      +.+..++-.++.....  ..... .|+++.+-
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~  261 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVD  261 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccC-CCCceeEC
Confidence            4777777655554432  22233 56666543

>KOG1520|consensus

Probab=85.06  E-value=1.7  Score=40.21  Aligned_cols=80  Identities=20%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCC----CeEEEEecCCCceeEeEEEeecccc--eeEEeCCcccccceeeee--eCCEE
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKL----DFIDFCNYDGTSRQQDTLYWTDRQL--NRVVAGSHYLLHPHSLTI--FEDTL   84 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~----~~Ie~~~ldG~~r~~~~lfwtd~~~--~~vl~~~~~l~~P~~l~v--~~d~l   84 (264)
                      .+...|+|+||. ++.|||+|+..    ..+.-+-+.|..  .|+||==|...  -+|+-.  .+.-|.|+++  -++++
T Consensus       159 ~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~--~GRl~~YD~~tK~~~VLld--~L~F~NGlaLS~d~sfv  233 (376)
T KOG1520|consen  159 PFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDP--TGRLFRYDPSTKVTKVLLD--GLYFPNGLALSPDGSFV  233 (376)
T ss_pred             eeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCC--ccceEEecCcccchhhhhh--cccccccccCCCCCCEE
Confidence            455689999999 99999999965    224444444421  13332222211  113333  3778888887  67788


Q ss_pred             EEEcCCCCeEEEE
Q psy17326         85 YWTDRQLNRVLSA   97 (264)
Q Consensus        85 YwtD~~~~~i~~~   97 (264)
                      -.++-...+|.+.
T Consensus       234 l~~Et~~~ri~ry  246 (376)
T KOG1520|consen  234 LVAETTTARIKRY  246 (376)
T ss_pred             EEEeeccceeeee
Confidence            8888776655544

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=84.92  E-value=2.2  Score=23.99  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             ccceeeee-eCCEEEEEcCCCCeEE
Q psy17326         72 LHPHSLTI-FEDTLYWTDRQLNRVL   95 (264)
Q Consensus        72 ~~P~~l~v-~~d~lYwtD~~~~~i~   95 (264)
                      ..|.||++ -++.||-+|...++|.
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~   26 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQ   26 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEE
Confidence            57999999 7789999999888765

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=84.78  E-value=0.81  Score=27.72  Aligned_cols=24  Identities=29%  Similarity=0.790  Sum_probs=16.5

Q ss_pred             CCcc--cceecCCCCCCCeeeecCCCeEE
Q psy17326        136 APCQ--QLCLLSPSSSTGYTCKCIAGFRV  162 (264)
Q Consensus       136 ~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L  162 (264)
                      ++|.  -.|...+   ++++|.|+.||..
T Consensus         6 ~~C~~nA~C~~~~---~~~~C~C~~Gy~G   31 (36)
T PF12947_consen    6 GGCHPNATCTNTG---GSYTCTCKPGYEG   31 (36)
T ss_dssp             GGS-TTCEEEE-T---TSEEEEE-CEEEC
T ss_pred             CCCCCCcEeecCC---CCEEeECCCCCcc
Confidence            3665  4788876   4899999999975

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=83.92  E-value=16  Score=34.00  Aligned_cols=93  Identities=16%  Similarity=0.221  Sum_probs=63.9

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQ   90 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~   90 (264)
                      ...+|+|+++...+.++|=.+...+.|..++........           .+..+    ..|.++++  .+.++|-++..
T Consensus        72 g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-----------~~~vG----~~P~~~~~~~~~~~vYV~n~~  136 (381)
T COG3391          72 GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-----------SIPVG----LGPVGLAVDPDGKYVYVANAG  136 (381)
T ss_pred             CCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-----------Eeeec----cCCceEEECCCCCEEEEEecc
Confidence            347899999999999999999999999999954433222           01222    26666666  67799999994


Q ss_pred             --CCeEEEEEccCCceeEEEeccCCCceeEEEe
Q psy17326         91 --LNRVLSAHKFRGKNQTVVSHLISQPLSIHVH  121 (264)
Q Consensus        91 --~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~  121 (264)
                        .+.+..++..+++....+..+. .|.++.+-
T Consensus       137 ~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~  168 (381)
T COG3391         137 NGNNTVSVIDAATNKVTATIPVGN-TPTGVAVD  168 (381)
T ss_pred             cCCceEEEEeCCCCeEEEEEecCC-CcceEEEC
Confidence              5778888876666554433332 45566543

>KOG1219|consensus

Probab=82.88  E-value=1  Score=50.35  Aligned_cols=20  Identities=25%  Similarity=0.748  Sum_probs=14.0

Q ss_pred             ceecCCCCCCCeeeecCCCeEEc
Q psy17326        141 LCLLSPSSSTGYTCKCIAGFRVT  163 (264)
Q Consensus       141 lCl~~p~~~~~~~C~Cp~G~~L~  163 (264)
                      .|++.+   +++.|.||.||+..
T Consensus      3916 tCip~~---n~f~CnC~~gyTG~ 3935 (4289)
T KOG1219|consen 3916 TCIPFY---NGFLCNCPNGYTGK 3935 (4289)
T ss_pred             EEEecC---CCeeEeCCCCccCc
Confidence            455543   68999999998743

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=81.51  E-value=8.6  Score=35.03  Aligned_cols=48  Identities=21%  Similarity=0.213  Sum_probs=36.6

Q ss_pred             cccceeeeeeCCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEE
Q psy17326         71 LLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIH  119 (264)
Q Consensus        71 l~~P~~l~v~~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~  119 (264)
                      +..|.+--.++++||..|+.++.+.+++..+|+...+ ..-...|.||.
T Consensus       202 LsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~V-a~vpG~~rGL~  249 (335)
T TIGR03032       202 LSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV-AFLPGFTRGLA  249 (335)
T ss_pred             ccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE-EECCCCCcccc
Confidence            7889999999999999999999999999877765544 22233444443

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG1219|consensus

Probab=81.14  E-value=1.1  Score=50.01  Aligned_cols=31  Identities=35%  Similarity=0.999  Sum_probs=25.2

Q ss_pred             ccccccCCccc--ceecCCCCCCCeeeecCCCeEE
Q psy17326        130 RNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFRV  162 (264)
Q Consensus       130 ~npC~~~~Csh--lCl~~p~~~~~~~C~Cp~G~~L  162 (264)
                      ..+|..++|.|  .|...|.  ++|.|.||.-|..
T Consensus      3864 ~d~C~~npCqhgG~C~~~~~--ggy~CkCpsqysG 3896 (4289)
T KOG1219|consen 3864 TDPCNDNPCQHGGTCISQPK--GGYKCKCPSQYSG 3896 (4289)
T ss_pred             ccccccCcccCCCEecCCCC--CceEEeCcccccC
Confidence            37788888886  8999884  6999999998863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		4e-27
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		4e-27
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		2e-26
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		3e-26
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		3e-26
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		4e-25
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		3e-16
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		3e-16
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		3e-16
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		2e-12
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		2e-12
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		2e-12
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		2e-12
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		3e-12

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 41/255 (16%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD SSR  II+++IYWPNGLTLD   +++Y+A++KL+FI   N DGT+RQ          
Sbjct: 157 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 207
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              VV GS  L HP +LT+FED LYWTD   + +L+ +K+ G+    +   I  P+ IH 
Sbjct: 208 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 262
Query: 121 HHPSLQPITRNDC-VNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLV 178
                QP   N C ++                Y C C  G ++ ++G+ C +  T +LL+
Sbjct: 263 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322
Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
            + + +  +SL      +TP           D+ L+  D           + + + +++D
Sbjct: 323 ARRTDLRRISL------DTP--------DFTDIVLQLED-----------IRHAIAIDYD 357
Query: 239 KKAAMLYWLEGTKKA 253
                +YW +   +A
Sbjct: 358 PVEGYIYWTDDEVRA 372

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 41/255 (16%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD SSR  II+++IYWPNGLTLD   +++Y+A++KL+FI   N DGT+RQ          
Sbjct: 149 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 199
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              VV GS  L HP +LT+FED LYWTD   + +L+ +K+ G+    +   I  P+ IH 
Sbjct: 200 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 254
Query: 121 HHPSLQPITRNDC-VNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLV 178
                QP   N C ++                Y C C  G ++ ++G+ C +  T +LL+
Sbjct: 255 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 314
Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
            + + +  +SL      +TP           D+ L+  D           + + + +++D
Sbjct: 315 ARRTDLRRISL------DTP--------DFTDIVLQLED-----------IRHAIAIDYD 349
Query: 239 KKAAMLYWLEGTKKA 253
                +YW +   +A
Sbjct: 350 PVEGYIYWTDDEVRA 364

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R  I  T ++WPNGLT+D A RR+Y+ ++K   I+  N DG+ R+          
Sbjct: 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---------- 238
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                  S  L HP ++T+FED+LYWTD     + SA+KF GKNQ ++ + +  P+ IH 
Sbjct: 239 ----AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEE 171
            HP  QP  +N C +                YTC C  GFR      C  E
Sbjct: 295 LHPQRQPAGKNRCGDNNGGCTHLCLPSGQN-YTCACPTGFRKINSHACALE 344

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R  I  T ++WPNGLT+D A RR+Y+ ++K   I+  N DG+ R+          
Sbjct: 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---------- 281
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                  S  L HP ++T+FED+LYWTD     + SA+KF GKNQ ++ + +  P+ IH 
Sbjct: 282 ----AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVE 170
            HP  QP  +N C +                YTC C  GFR      C +
Sbjct: 338 LHPQRQPAGKNRCGDNNGGCTHLCLPSGQN-YTCACPTGFRKINSHACAQ 386

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 16/182 (8%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD SSR  II+++IYWPNGLTLD   +++Y+A++KL+FI   N DGT+RQ          
Sbjct: 149 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 199
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              VV GS  L HP +LT+FED LYWTD   + +L+ +K+ G+    +   I  P+ IH 
Sbjct: 200 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 254
Query: 121 HHPSLQPITRNDC-VNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLV 178
                QP   N C ++                Y C C  G ++ ++G+ C +  T +LL+
Sbjct: 255 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 314
Query: 179 MK 180
            +
Sbjct: 315 AR 316

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD SSR  II+++IYWPNGLTLD   +++Y+A++KL+FI   N DGT+RQ          
Sbjct: 152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 202
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              VV GS  L HP +LT+FED LYWTD   + +L+ +K+ G+    +   I  P+ IH 
Sbjct: 203 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257
Query: 121 HHPSLQPITRNDC-VNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEE 171
                QP   N C ++                Y C C  G ++ ++G+  ++
Sbjct: 258 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 309

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 42/252 (16%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R+T++   +   NGLT+D A RR+Y+ +   + I+  N  G +R+          
Sbjct: 153 MDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---------- 201
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              V+A    L HP  LT ++D +YWTD     +  A+K  G+N+T++   +   + I V
Sbjct: 202 ---VIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            H S Q    N+C ++              G+ C C A + +  D R     T  LL  +
Sbjct: 257 FHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ 315
Query: 181 GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            S I  + +   D++++P                       II P+  + N   +++D  
Sbjct: 316 KSAINRMVI---DEQQSP----------------------DIILPIHSLRNVRAIDYDPL 350
Query: 241 AAMLYWLEGTKK 252
              LYW++  + 
Sbjct: 351 DKQLYWIDSRQN 362

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 42/252 (16%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R+T++   +   NGLT+D A RR+Y+ +   + I+  N  G +R+          
Sbjct: 151 MDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---------- 199
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              V+A    L HP  LT ++D +YWTD     +  A+K  G+N+T++   +   + I V
Sbjct: 200 ---VIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 254
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            H S Q    N+C ++              G+ C C A + +  D R     T  LL  +
Sbjct: 255 FHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ 313
Query: 181 GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            S I  + +   D++++P                       II P+  + N   +++D  
Sbjct: 314 KSAINRMVI---DEQQSP----------------------DIILPIHSLRNVRAIDYDPL 348
Query: 241 AAMLYWLEGTKK 252
              LYW++  + 
Sbjct: 349 DKQLYWIDSRQN 360

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 42/252 (16%)
Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R+T++   +   NGLT+D A RR+Y+ +   + I+  N  G +R+          
Sbjct: 158 MDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---------- 206
Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              V+A    L HP  LT ++D +YWTD     +  A+K  G+N+T++   +   + I V
Sbjct: 207 ---VIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 261
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
            H S Q    N+C ++              G+ C C A + +  D R     T  LL  +
Sbjct: 262 FHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ 320
Query: 181 GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
            S I  + +   D++++P                       II P+  + N   +++D  
Sbjct: 321 KSAINRMVI---DEQQSP----------------------DIILPIHSLRNVRAIDYDPL 355
Query: 241 AAMLYWLEGTKK 252
              LYW++  + 
Sbjct: 356 DKQLYWIDSRQN 367

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 8   TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
           ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+             ++  
Sbjct: 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 286
Query: 68  SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
              L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + + H   QP
Sbjct: 287 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 346
Query: 128 ITRNDCVNAXXXXXXXXXXXXXT--------GYTCKCIAGFRVTKDGR-CVEE 171
              N C                          +TC C  G  + +D R C+ E
Sbjct: 347 RGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 8   TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
           ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+             ++  
Sbjct: 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 204
Query: 68  SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
              L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + + H   QP
Sbjct: 205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264
Query: 128 ITRNDCVNAXXXXX--------XXXXXXXXTGYTCKCIAGFRVTKDGR 167
              N C                          +TC C  G  + +D R
Sbjct: 265 RGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMR 312

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 8   TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
           ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+             ++  
Sbjct: 279 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 326
Query: 68  SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
              L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + + H   QP
Sbjct: 327 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 386
Query: 128 ITRNDC 133
              N C
Sbjct: 387 RGVNWC 392

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 8   TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
           ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+             ++  
Sbjct: 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 598
Query: 68  SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
              L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + + H   QP
Sbjct: 599 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 658
Query: 128 ITRNDC 133
              N C
Sbjct: 659 RGVNWC 664

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 8   TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
           ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+             ++  
Sbjct: 533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 580
Query: 68  SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
              L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + + H   QP
Sbjct: 581 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQP 640
Query: 128 ITRNDC 133
              N C
Sbjct: 641 RGVNWC 646

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	7e-54
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-51
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	5e-50
3v65_B	386	Low-density lipoprotein receptor-related protein;	9e-45
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-43
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	3e-41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	3e-10
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-37
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-31
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	9e-30
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	6e-10
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	1e-30
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	1e-09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	8e-30
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-28
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	6e-08
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	1e-04
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-04
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	2e-04
2wph_E	59	Coagulation factor IXA light chain; serine proteas	2e-04
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	4e-04
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	8e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  185 bits (469), Expect = 7e-54
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           ++     ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+          
Sbjct: 544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 594

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              ++     L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + +
Sbjct: 595 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 651

Query: 121 HHPSLQPITRNDCV-----NAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGRCVEEE 172
            H   QP   N C      N  CQ LCL +P     S  +TC C  G  + +D R    E
Sbjct: 652 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 711

Query: 173 TPVLLVMKGSQIVDVSLKPGDKKETPVL 200
               +  + +  V + +     +     
Sbjct: 712 AEAAVATQETSTVRLKVSSTAVRTQHTT 739

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  178 bits (451), Expect = 1e-51
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 21/182 (11%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           ++     ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+          
Sbjct: 526 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 576

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              ++     L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + +
Sbjct: 577 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633

Query: 121 HHPSLQPITRNDCV-----NAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGR-CVEE 171
            H   QP   N C      N  CQ LCL +P     S  +TC C  G  + +D R C+ E
Sbjct: 634 FHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 693

Query: 172 ET 173
             
Sbjct: 694 AE 695

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score =  168 bits (425), Expect = 5e-50
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 21/180 (11%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           ++     ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+          
Sbjct: 232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 282

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              ++     L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + +
Sbjct: 283 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339

Query: 121 HHPSLQPITRNDCV-----NAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGR-CVEE 171
            H   QP   N C      N  CQ LCL +P     S  +TC C  G  + +D R C+ E
Sbjct: 340 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score =  154 bits (389), Expect = 9e-45
 Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 19/172 (11%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R  I  T ++WPNGLT+D A RR+Y+ ++K   I+  N DG+             
Sbjct: 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------- 278

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
            +R    S  L HP ++T+FED+LYWTD     + SA+KF GKNQ ++ + +  P+ IH 
Sbjct: 279 -HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337

Query: 121 HHP--SLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE 170
            HP        R    N  C  LCL S      YTC C  GFR      C +
Sbjct: 338 LHPQRQPAGKNRCGDNNGGCTHLCLPSG---QNYTCACPTGFRKINSHACAQ 386

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETP 174
            +C   N  C Q C +         C C  G+R+T+DGR  ++   
Sbjct: 4   ENCNVNNGGCAQKCQMIR---GAVQCTCHTGYRLTEDGRTCQDVNE 46

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score =  148 bits (374), Expect = 3e-43
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 21/178 (11%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           ++     ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+          
Sbjct: 150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 200

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              ++     L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + +
Sbjct: 201 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257

Query: 121 HHPSLQPITRNDC-----VNAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGR-CV 169
            H   QP   N C      N  CQ LCL +P     S  +TC C  G  + +D R C+
Sbjct: 258 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 3   ESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLN 62
           + S  T +   +     L  ++A+ R+Y+++     I     D                 
Sbjct: 18  DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------- 67

Query: 63  RVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                S  +  P  L +      +YWTD  L  V  A     K +T+     S+P +I V
Sbjct: 68  YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 127

Query: 121 H 121
            
Sbjct: 128 D 128

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  143 bits (361), Expect = 3e-41
 Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 18/176 (10%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD SSR  II+++IYWPNGLTLD   +++Y+A++KL+FI   N DGT             
Sbjct: 152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------------- 198

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
            NR       L HP +LT+FED LYWTD   + +L+ +K+ G+    +   I  P+ IH 
Sbjct: 199 -NRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257

Query: 121 HHPSLQPITRND--CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEET 173
                QP   N     N  C  LCL+SP     Y C C  G ++ ++G+ C +  +
Sbjct: 258 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKP-FYQCACPTGVKLLENGKTCKDGNS 312

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 15/122 (12%)

Query: 2   DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQL 61
           +    +TI+   +     +    +   +Y+++   + I    ++ T   Q+ +       
Sbjct: 22  NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------- 74

Query: 62  NRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIH 119
                    LL P  L      + LYWTD + NR+  ++      + +    + QP +I 
Sbjct: 75  ------VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIA 128

Query: 120 VH 121
           + 
Sbjct: 129 LD 130

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score =  134 bits (337), Expect = 2e-37
 Identities = 68/174 (39%), Positives = 90/174 (51%), Gaps = 19/174 (10%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R  I  T ++WPNGLT+D A RR+Y+ ++K   I+  N DG+             
Sbjct: 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------- 235

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
            +R    S  L HP ++T+FED+LYWTD     + SA+KF GKNQ ++ + +  P+ IH 
Sbjct: 236 -HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294

Query: 121 HHPSLQPITRNDC--VNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEE 172
            HP  QP  +N C   N  C  LCL S      YTC C  GFR      C  E 
Sbjct: 295 LHPQRQPAGKNRCGDNNGGCTHLCLPSG---QNYTCACPTGFRKINSHACALEV 345

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  121 bits (304), Expect = 2e-31
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 20/171 (11%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           +D S R  +++T + WPNGL LD    ++Y+ ++K D I+  N DGT             
Sbjct: 465 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT------------- 511

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
             R V     + H    T+  D +YWTD Q   +   HK   + + ++   +   + +  
Sbjct: 512 -GRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQ-LPDLMGLKA 569

Query: 121 HHPSLQPITRNDCV-NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
            +      +      N  C  LCL  P    G  C C  GF +  D + C+
Sbjct: 570 TNVHRVIGSNPCAEENGGCSHLCLYRP---QGLRCACPIGFELISDMKTCI 617

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  116 bits (291), Expect = 9e-30
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 41/255 (16%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD SSR  II+++IYWPNGLTLD   +++Y+A++KL+FI   N DGT             
Sbjct: 157 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------------- 203

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
            NR       L HP +LT+FED LYWTD   + +L+ +K+ G+    +   I  P+ IH 
Sbjct: 204 -NRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 262

Query: 121 HHPSLQPITRND--CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLV 178
                QP   N     N  C  LCL+SP     Y C C  G ++ ++G+  ++    LL+
Sbjct: 263 FSQQRQPNATNPCGIDNGGCSHLCLMSP-VKPFYQCACPTGVKLLENGKTCKDGATELLL 321

Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
           +                        + + +  +SL   D  + I+  +  + + + +++D
Sbjct: 322 L-----------------------ARRTDLRRISLDTPD-FTDIVLQLEDIRHAIAIDYD 357

Query: 239 KKAAMLYWLEGTKKA 253
                +YW +   +A
Sbjct: 358 PVEGYIYWTDDEVRA 372

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 58.3 bits (140), Expect = 6e-10
 Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 33/156 (21%)

Query: 2   DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ---------- 51
           +    +TI+   +     +    +   +Y+++   + I    ++ T   Q          
Sbjct: 27  NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 86

Query: 52  ---------DTLYWTDRQLNRV-----------VAGSHYLLHPHSLTI--FEDTLYWTDR 89
                    + LYWTD + NR+           V     L  P ++ +      +YWTD 
Sbjct: 87  DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW 146

Query: 90  QLNRVLSAHKFRGKNQTV-VSHLISQPLSIHVHHPS 124
                +      G ++ + ++  I  P  + + +  
Sbjct: 147 GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE 182

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 11  STKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHY 70
              I     +  D     +Y+ + ++  I     DG+  Q             VV     
Sbjct: 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ------------FVVTAQ-- 390

Query: 71  LLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVH 121
           + HP  + +      LYWTD   +R+          + ++S  + +P +I + 
Sbjct: 391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLD 443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score =  113 bits (285), Expect = 1e-30
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 16/127 (12%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD ++R  +    +  PNGLT D  + ++ + ++     +  N     R++         
Sbjct: 153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK--------- 203

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKN-QTVVSHLISQPLSIH 119
              V+ G     +P ++T +   LY+TD + N V++      K   T   H  ++   I 
Sbjct: 204 ---VLEGLQ---YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT 257

Query: 120 VHHPSLQ 126
           +      
Sbjct: 258 IALSQCP 264

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 84.1 bits (208), Expect = 2e-19
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 34/155 (21%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR----------- 49
           +     +TII   +  P G+ LD   R +++ +S+LD I+    DGT R           
Sbjct: 65  LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNP 124

Query: 50  -------QQDTLYWTDRQL-------------NRVVAGSHYLLHPHSLTI--FEDTLYWT 87
                   +  LYWTD                NR +     L  P+ LT   F   L W 
Sbjct: 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV 184

Query: 88  DRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHH 122
           D   +R    +      +  V   +  P ++  + 
Sbjct: 185 DAGTHRAECLN-PAQPGRRKVLEGLQYPFAVTSYG 218

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 33/157 (21%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ--------- 51
           M ++     +        GL  D   + VY+ +     I   +  G              
Sbjct: 22  MKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81

Query: 52  ---------DTLYWTDRQLNRV-VA---GSHY-------LLHPHSLTI--FEDTLYWTDR 89
                     T++WTD QL+R+ VA   G+         L++P  +        LYWTD 
Sbjct: 82  EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141

Query: 90  QLN--RVLSAHKFRGKNQTVVSHLISQPLSIHVHHPS 124
             +  ++ ++H      + +    +  P  +     S
Sbjct: 142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS 178

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  116 bits (292), Expect = 8e-30
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 20/176 (11%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           +D + R  +  + +  P  L LD    ++++A+S L  I+  +  G              
Sbjct: 463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA------------- 509

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
            NR+V     +L P  LT+FE+ LYW D+Q   +        + +T V   I+Q   IH 
Sbjct: 510 -NRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 568

Query: 121 HHPSLQP---ITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
                            N  C  +CL+         C C     + +D   C   +
Sbjct: 569 VKELNLQEYRQHPCAQDNGGCSHICLVKGDG--TTRCSCPMHLVLLQDELSCGGTK 622

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  112 bits (281), Expect = 2e-28
 Identities = 62/254 (24%), Positives = 100/254 (39%), Gaps = 44/254 (17%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD S R+T++   +   NGLT+D A RR+Y+ +   + I+  N  G +R+          
Sbjct: 153 MDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV--------- 202

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              +        HP  LT ++D +YWTD     +  A+K  G+N+T++   +   + I V
Sbjct: 203 ---IADDLP---HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256

Query: 121 HHPSLQPITRN-DCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVM 179
            H S Q         N  C  LCL  P     + C C A + +  D R     T  LL  
Sbjct: 257 FHSSRQSGWNECASSNGHCSHLCLAVPVGG--FVCGCPAHYSLNADNRTCSAPTTFLLFS 314

Query: 180 KGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDK 239
           + S I  + +                             S  II P+  + N   +++D 
Sbjct: 315 QKSAINRMVIDEQQ-------------------------SPDIILPIHSLRNVRAIDYDP 349

Query: 240 KAAMLYWLEGTKKA 253
               LYW++  +  
Sbjct: 350 LDKQLYWIDSRQNM 363

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 52.9 bits (126), Expect = 4e-08
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 31/155 (20%)

Query: 4   SSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ------------ 51
           ++   I  T +   + L  D+   R+Y+ +  L  I     +G++ +             
Sbjct: 26  NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85

Query: 52  ------DTLYWTDRQLNRV-----------VAGSHYLLHPHSLTI--FEDTLYWTDRQLN 92
                   LYW D   NR+           V     L  P +L +   E  +YWT+    
Sbjct: 86  AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK 145

Query: 93  RVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
             +      G  +T +   + +   + + +   + 
Sbjct: 146 PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRL 180

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 52.1 bits (124), Expect = 6e-08
 Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 3   ESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLN 62
           +S    +    +     +  D   +++Y+ +S+ + I     DG+     T+  +     
Sbjct: 328 QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF--TVVVSSVPS- 384

Query: 63  RVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
                 +  + P+ L+I  +   +YWT    N +            V+     +P ++ V
Sbjct: 385 -----QNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVV 439

Query: 121 H 121
           +
Sbjct: 440 N 440

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 21/107 (19%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           ++  +   +    I   N       +   Y        +     DGT  +          
Sbjct: 214 INNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPALCVVKNDGTGFK---------- 259

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTV 107
              +  G        ++ +    +Y+TD   N+              
Sbjct: 260 --ELAKGE-----FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKA 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 57/216 (26%)

Query: 13  KIYWPNGLTLDIATRRVYFAESKLDFI-DFC-----NY----DGTSRQQDTLYWTDRQLN 62
           KI+W   L L    +     E+ L+ +         N+    D +S  +  ++    +L 
Sbjct: 183 KIFW---LNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 63  RVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVV----SHLISQPLSI 118
           R++    Y    + L +  +          +  +A  F    + ++      +     + 
Sbjct: 236 RLLKSKPY---ENCLLVLLNV--QN----AKAWNA--FNLSCKILLTTRFKQVTDFLSAA 284

Query: 119 HVHHPSLQPITRN-----------DCVNAPCQQL----CLLSPSSSTGYTCKCIAGFRVT 163
              H SL   +               ++   Q L       +P          IA     
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIA--ESI 337

Query: 164 KDGRCVEEETPVLLVMKGSQIVDVS---LKPGDKKE 196
           +DG    +    +   K + I++ S   L+P + ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 40/147 (27%)

Query: 45  DGTSRQQDTLYWTDRQLNRVVAGSHYLLHP-------HSLTIFED---------TLYWTD 88
           DG +   +  +    +L  ++  S  +L P         L++F           +L W D
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 89  ----------RQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV-----HHPSLQPITRNDC 133
                      +L++     K + K  T+    I   L + +      H S+  +   D 
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSI--V---DH 452

Query: 134 VNAPCQQLCL--LSPSSSTGYTCKCIA 158
            N P +      L P     Y    I 
Sbjct: 453 YNIP-KTFDSDDLIPPYLDQYFYSHIG 478

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 138 CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEET 173
           C+Q C     +    +C+C  G+ +  DG  C     
Sbjct: 15  CEQYCSDHTGT--KRSCRCHEGYSLLADGVSCTPTVE 49

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV 169
           N  C  +C         Y C C  GF++    RC 
Sbjct: 36  NGGCSYVCNDLKIG---YECLCPDGFQLVAQRRCE 67

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 138 CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEET 173
           C+Q C     +    +C+C  G+ +  DG  C     
Sbjct: 9   CEQYCSDHTGT--KRSCRCHEGYSLLADGVSCTPTVE 43

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 138 CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
           C+Q C  S  +     C C  G+R+ ++ + C    
Sbjct: 9   CEQFCKNSADNK--VVCSCTEGYRLAENQKSCEPAV 42

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 130 RNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
           R  C   N  C Q C    +S     C C  G+ +  +G+ C+   
Sbjct: 1   RKLCSLDNGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTG 43

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
           N  C Q C    S      C C  G+ +  D + CV  E
Sbjct: 5   NGGCDQFCREERSE---VRCSCAHGYVLGDDSKSCVSTE 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.97
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.69
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.65
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.56
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.55
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.51
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.44
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.25
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.23
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.52
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.39
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.36
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	98.23
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.21
2wph_E	59	Coagulation factor IXA light chain; serine proteas	98.21
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	98.16
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.1
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.05
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.99
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.93
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.78
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.75
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.62
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.48
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.39
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.32
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.24
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.12
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	97.08
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.04
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.96
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.92
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.92
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.91
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.9
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.76
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.62
1szb_A	170	Mannose binding lectin-associated serine protease-	96.62
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.49
1aut_L	114	Activated protein C; serine proteinase, plasma cal	96.47
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	96.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.24
1nzi_A	159	Complement C1S component; calcium, innate immunity	96.13
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.07
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.02
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	95.99
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	95.98
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.75
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	95.56
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.55
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.52
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	95.35
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	95.29
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	95.27
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	95.22
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	95.21
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	95.18
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.15
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	95.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.05
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.99
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	94.98
2vh0_B	134	Activated factor XA light chain; serine protease,	94.97
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	94.97
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.88
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	94.73
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	94.67
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	94.62
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	94.62
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	94.6
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	94.58
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	94.39
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	94.38
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	94.37
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	94.26
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	94.19
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	94.12
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	94.07
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	94.02
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	93.72
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.71
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	93.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	93.35
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.32
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.14
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.69
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	92.3
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	92.15
2bou_A	143	EGF-like module containing mucin-like hormone rece	91.98
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	91.96
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	91.92
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	91.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	91.51
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	91.42
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	90.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.77
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.12
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	88.66
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	88.3
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	88.24
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	88.16
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	88.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	87.75
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	87.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	87.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	87.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	87.38
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	87.07
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	86.99
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	86.98
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	86.71
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	86.43
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	86.21
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	86.11
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	85.02
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	84.91
2vh0_B	134	Activated factor XA light chain; serine protease,	84.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	84.44
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	83.65
2bou_A	143	EGF-like module containing mucin-like hormone rece	83.47
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	83.25
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	83.2
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	82.51
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	81.12
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	80.98
3dem_A	278	Complement factor MAsp-3; complement system, innat	80.98
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	80.93
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	80.87

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=1e-44  Score=353.42  Aligned_cols=220  Identities=36%  Similarity=0.729  Sum_probs=190.9

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+++++|+...+.+|+|||+|+.+++|||+|+..++|+++++||++|++            ++.+  .+.||+||+++
T Consensus       157 ~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~------------~~~~--~~~~P~gi~~~  222 (619)
T 3s94_A          157 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------------VVKG--SLPHPFALTLF  222 (619)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------------------CCCEEES
T ss_pred             CCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE------------EEeC--CCCCceEEEEe
Confidence            799999999998999999999999999999999999999999999999998            7664  47899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccc--cCCcccceecCCCCCCCeeeecCC
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIA  158 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~--~~~CshlCl~~p~~~~~~~C~Cp~  158 (264)
                      +++|||+||.+++|.+++|++|+..+++..++..|++|++||+.+||.+.|||.  +++|||+|+++|.. .+|+|+||.
T Consensus       223 ~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~-~~~~C~C~~  301 (619)
T 3s94_A          223 EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVK-PFYQCACPT  301 (619)
T ss_dssp             SSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSST-TSEEEECCT
T ss_pred             CCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCC-CCceEeCCc
Confidence            999999999999999999999999888888888999999999999999999997  46999999998853 479999999


Q ss_pred             CeEEcCC-CCCCCCCccEEEEEeCCeEEEEEcCCCCCCCcceeEeeeCceeEEeeeCCCCCCCceEEEecCCCCcEEEEE
Q psy17326        159 GFRVTKD-GRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEF  237 (264)
Q Consensus       159 G~~L~~~-~tC~~~~~~~ll~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~id~  237 (264)
                      ||.|.++ ++|.+.+++||||+++..|++|.+                        ++...+ ..++|+.++.++++|||
T Consensus       302 g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l------------------------~~~~~~-~~~~~~~~l~~~~~ld~  356 (619)
T 3s94_A          302 GVKLLENGKTCKDGATELLLLARRTDLRRISL------------------------DTPDFT-DIVLQLEDIRHAIAIDY  356 (619)
T ss_dssp             TCCBCTTSSCBCSSCSEEEEEEESSCEEEEES------------------------SSTTCC-CEECCCSCCSSEEEEEE
T ss_pred             hheecccCcccCCCCceEEEEEcccceEEEec------------------------CCCccc-eeEEeccccCccEEEEE
Confidence            9999984 689988889999999999999955                        444332 56789999999999999


Q ss_pred             ECCCCEEEEEeCC-Ceeec--cCCCC
Q psy17326        238 DKKAAMLYWLEGT-KKANE--EDGGN  260 (264)
Q Consensus       238 D~~~~~iYW~D~~-~~~~~--~~~~~  260 (264)
                      |+.+++|||+|.. .+|.|  .+|++
T Consensus       357 d~~~~~ly~sD~~~~~I~r~~~~g~~  382 (619)
T 3s94_A          357 DPVEGYIYWTDDEVRAIRRSFIDGSG  382 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EcCCCeEEEEeCCCCeEEEEEcCCCc
Confidence            9999999999964 56776  56654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=1.9e-42  Score=338.02  Aligned_cols=215  Identities=32%  Similarity=0.610  Sum_probs=189.8

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+++++|++ ++.+|+|||+|+.+++|||+|+..++|++++++|++|++             +..  .+.+|+||+++
T Consensus       153 ~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v-------------~~~--~l~~P~glav~  216 (628)
T 4a0p_A          153 MDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV-------------IAD--DLPHPFGLTQY  216 (628)
T ss_dssp             TTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------EEE--CCSCEEEEEEE
T ss_pred             CCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEE-------------eec--cCCCceEEEEE
Confidence            79999999986 899999999999999999999999999999999999964             444  37899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccc--cCCcccceecCCCCCCCeeeecCC
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIA  158 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~--~~~CshlCl~~p~~~~~~~C~Cp~  158 (264)
                      +++|||+||..+.|.+++|.+|++.+++..++..|++|+|||+.+|| +.|+|.  +++|+|+|++.|.  ++|+|+||.
T Consensus       217 ~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~-~~n~C~~~ng~C~~~C~~~~~--~~~~C~C~~  293 (628)
T 4a0p_A          217 QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPV--GGFVCGCPA  293 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSC-CCCTTTTTGGGCSSEEEEETT--TEEEEECST
T ss_pred             CCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccc-cceEeccCCCCcchhhhcCCC--CCeeEEcCC
Confidence            99999999999999999999999999998888899999999999998 789998  4699999999873  589999999


Q ss_pred             CeEEcC-CCCCCCCCccEEEEEeCCeEEEEEcCCCCCCCcceeEeeeCceeEEeeeCCCCCCCceEEEecCCCCcEEEEE
Q psy17326        159 GFRVTK-DGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEF  237 (264)
Q Consensus       159 G~~L~~-~~tC~~~~~~~ll~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~id~  237 (264)
                      ||.|.+ +++|.+. .+||||+++..|+++.+                        +... ..+.++|+.+++++++|||
T Consensus       294 g~~l~~d~~~C~~~-~~~Ll~s~~~~i~~i~l------------------------~~~~-~~~~~l~~~~~~~~~~ld~  347 (628)
T 4a0p_A          294 HYSLNADNRTCSAP-TTFLLFSQKSAINRMVI------------------------DEQQ-SPDIILPIHSLRNVRAIDY  347 (628)
T ss_dssp             TCEECTTSSCEECC-SSEEEEEETTEEEEECC------------------------CTTC-CCCEECCCTTCSCEEEEEE
T ss_pred             CcEecccCCcCccc-cceeeeeccceEEEEec------------------------cccc-CceEEEEehhcCCceEEEE
Confidence            999988 5689875 47999999999999954                        3222 2357789999999999999


Q ss_pred             ECCCCEEEEEeCC-Ceeec--cCCCC
Q psy17326        238 DKKAAMLYWLEGT-KKANE--EDGGN  260 (264)
Q Consensus       238 D~~~~~iYW~D~~-~~~~~--~~~~~  260 (264)
                      |+.+++|||+|.. ++|.+  .+|++
T Consensus       348 d~~~~~iy~sD~~~~~I~r~~~~g~~  373 (628)
T 4a0p_A          348 DPLDKQLYWIDSRQNMIRKAQEDGSQ  373 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ecCCCeEEEEecCcceEEEEEcCCCC
Confidence            9999999999975 46665  56654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=100.00  E-value=1.1e-35  Score=267.92  Aligned_cols=157  Identities=43%  Similarity=0.821  Sum_probs=143.2

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+.+++++..++.+|+|||+|+.+++|||+|+..++|+++++||++|++            ++..  .+.+|+||+++
T Consensus       152 ~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~------------~~~~--~~~~P~glav~  217 (318)
T 3sov_A          152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------------VVKG--SLPHPFALTLF  217 (318)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EECS--CCSCEEEEEEE
T ss_pred             cCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE------------EecC--CCCCceEEEEe
Confidence            799999999998999999999999999999999999999999999999998            7754  47899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccc--cCCcccceecCCCCCCCeeeecCC
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIA  158 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~--~~~CshlCl~~p~~~~~~~C~Cp~  158 (264)
                      ++.+||+||..++|.++++.+|+..+.+...+.+|++|+|||+.+||.+.|||.  |++|||||++.|.. .+++|+||+
T Consensus       218 ~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~q~~~~n~C~~~ng~Cs~~C~~~~~~-~~~~C~C~~  296 (318)
T 3sov_A          218 EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVK-PFYQCACPT  296 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGGGSCCCCCTTTTTGGGCSSEEEECSST-TSEEEECST
T ss_pred             CCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEeccccccccccccccCCCCcceEEecCCCC-CCeEEECCC
Confidence            999999999999999999999998888888888999999999999998899997  46999999999853 379999999


Q ss_pred             CeEEcC-CCCCCCCC
Q psy17326        159 GFRVTK-DGRCVEEE  172 (264)
Q Consensus       159 G~~L~~-~~tC~~~~  172 (264)
                      ||+|.+ +++|.+..
T Consensus       297 g~~l~~d~~~c~~~~  311 (318)
T 3sov_A          297 GVKLLENGKTCKDGN  311 (318)
T ss_dssp             TCCBCTTSSCBCC--
T ss_pred             CCEECCCCCCCCCCC
Confidence            999998 56898764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=6.8e-35  Score=270.21  Aligned_cols=159  Identities=31%  Similarity=0.652  Sum_probs=145.1

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+.+++++..++.+|+|||+|+.+++|||+|+..++|+++++||++|++            ++.....+.+|+||+++
T Consensus       232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~------------~~~~~~~l~~P~gl~v~  299 (400)
T 3p5b_L          232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILEDEKRLAHPFSLAVF  299 (400)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEE------------EEECSSTTSSEEEEEEE
T ss_pred             CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEE------------EEeCCCCCCCCEEEEEe
Confidence            799999999999999999999999999999999999999999999999998            77754457899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccc-----cCCcccceecCCCC---CCCe
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCV-----NAPCQQLCLLSPSS---STGY  152 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~-----~~~CshlCl~~p~~---~~~~  152 (264)
                      +++|||+||..++|.+++|.+|+..+++...+.+|++|+|+|+.+||.+.|||.     |++|+|||++.|..   ..++
T Consensus       300 ~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~c~~~~~~ng~C~~lC~~~~~~~~~~~~~  379 (400)
T 3p5b_L          300 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKF  379 (400)
T ss_dssp             TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGGSCCCCCSSSSSSSGGGGCSSEEEECCCSSTTCCSE
T ss_pred             CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeeccCCCCCCccccccCCCcCcCCeecCCCcccCCCCCe
Confidence            999999999999999999999999998888889999999999999999999995     56999999998741   2379


Q ss_pred             eeecCCCeEEcC-CCCCCCC
Q psy17326        153 TCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       153 ~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      +|+||+||+|.+ +++|.+.
T Consensus       380 ~C~C~~g~~l~~d~~~C~~~  399 (400)
T 3p5b_L          380 TCACPDGMLLARDMRSCLTE  399 (400)
T ss_dssp             EEECCTTCEECTTSSSEESC
T ss_pred             eEECCCCCEECCCCCccCCC
Confidence            999999999998 4689753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=100.00  E-value=1.2e-34  Score=260.08  Aligned_cols=158  Identities=31%  Similarity=0.649  Sum_probs=142.6

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+.+++++...+.+|+|||+|+.+++|||+|+..++|+++++||+++++            ++.....+.+|+||+++
T Consensus       150 ~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~------------~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EEECTTTTSSEEEEEEE
T ss_pred             CCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE------------EeecCCccCCcEEEEEE
Confidence            799999999988899999999999999999999999999999999999998            76643357899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccc-----cCCcccceecCCCC---CCCe
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCV-----NAPCQQLCLLSPSS---STGY  152 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~-----~~~CshlCl~~p~~---~~~~  152 (264)
                      +++|||+||..++|.++++.+|+..+.+..++..|++|+|+|+.+||.+.|+|.     |++|||||++.|..   .++|
T Consensus       218 ~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~  297 (316)
T 1ijq_A          218 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKF  297 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCCTTSSSSSGGGGCSSEEEECCCCSTTCCSE
T ss_pred             CCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEeccccCCcccccccccccCCCCcCcccCCCccccCCCCCe
Confidence            999999999999999999999998888888888999999999999999999997     45899999998731   2479


Q ss_pred             eeecCCCeEEcC-CCCCCC
Q psy17326        153 TCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       153 ~C~Cp~G~~L~~-~~tC~~  170 (264)
                      +|+||.||+|.+ +++|.+
T Consensus       298 ~C~C~~g~~l~~d~~~C~~  316 (316)
T 1ijq_A          298 TCACPDGMLLARDMRSCLT  316 (316)
T ss_dssp             EEECCTTCEECTTSSCEEC
T ss_pred             EeeCCCCCEECCCCCccCC
Confidence            999999999998 568963

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=7.3e-35  Score=265.22  Aligned_cols=153  Identities=44%  Similarity=0.844  Sum_probs=141.2

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+.+++++..++.+|+|||+|+.+++|||+|+..++|+++++||+++++            ++..  .+.+|+||+++
T Consensus       189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~------------~~~~--~~~~P~giav~  254 (349)
T 3v64_C          189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA------------VISQ--GLPHPFAITVF  254 (349)
T ss_dssp             TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EECS--SCSSEEEEEEE
T ss_pred             CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE------------EEeC--CCCCceEEEEE
Confidence            799999999988999999999999999999999999999999999999987            7765  37899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCcccccccc--CCcccceecCCCCCCCeeeecCC
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVN--APCQQLCLLSPSSSTGYTCKCIA  158 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~~--~~CshlCl~~p~~~~~~~C~Cp~  158 (264)
                      +++|||+||..++|.+++|.+|+..+++...+..|++|+++|+.+||.+.|||..  ++|+||||+.|   ++++|+||+
T Consensus       255 ~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~qp~~~n~C~~~~g~C~~lCl~~~---~~~~C~C~~  331 (349)
T 3v64_C          255 EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSG---QNYTCACPT  331 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGSCCCCCTTTTGGGGCSSEEECCT---TSCEEECCT
T ss_pred             CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccccCccccCcccCCCCCcccEeecCC---CCCeeECCC
Confidence            9999999999999999999999999988888999999999999999999999984  58999999997   489999999


Q ss_pred             CeEEcC-CCCCCCC
Q psy17326        159 GFRVTK-DGRCVEE  171 (264)
Q Consensus       159 G~~L~~-~~tC~~~  171 (264)
                      ||+ .+ +++|.++
T Consensus       332 g~~-~~d~~~C~~~  344 (349)
T 3v64_C          332 GFR-KINSHACALE  344 (349)
T ss_dssp             TEE-EETTTEEEEG
T ss_pred             CCc-CCCCCcccch
Confidence            999 66 5689753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=8.4e-34  Score=282.88  Aligned_cols=161  Identities=30%  Similarity=0.637  Sum_probs=146.1

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+.+++|+..++.+|+|||||+.+++|||+|+..++|++++++|++|++            ++.....+.+|++|+++
T Consensus       544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~------------v~~~~~~l~~P~glav~  611 (791)
T 3m0c_C          544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILEDEKRLAHPFSLAVF  611 (791)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EEECTTTTSSEEEEEEE
T ss_pred             cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE------------EecCCCccCCCCEEEEe
Confidence            799999999999999999999999999999999999999999999999998            87764468899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCcccccccc-----CCcccceecCCCC---CCCe
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVN-----APCQQLCLLSPSS---STGY  152 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~~-----~~CshlCl~~p~~---~~~~  152 (264)
                      +++|||+||..+.|.+++|++|+.++++...+..|++|+|||+.+||.+.|||..     ++||||||++|..   ..+|
T Consensus       612 ~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Qp~~~N~C~~~~~~ng~CshlCl~~p~~~~~~~~~  691 (791)
T 3m0c_C          612 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKF  691 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCCTTTSSSSGGGGCSSEEEECCCCSTTCCSE
T ss_pred             CCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccCCCCCCcccccCCCCcCcCeeecCCCCcCCCCCCc
Confidence            9999999999999999999999999999888999999999999999999999973     6999999998741   2379


Q ss_pred             eeecCCCeEEcC-CCCCCCCCc
Q psy17326        153 TCKCIAGFRVTK-DGRCVEEET  173 (264)
Q Consensus       153 ~C~Cp~G~~L~~-~~tC~~~~~  173 (264)
                      +|+||+||+|.+ +++|.+.++
T Consensus       692 ~C~Cp~g~~L~~d~~tC~~~~~  713 (791)
T 3m0c_C          692 TCACPDGMLLARDMRSCLTEAE  713 (791)
T ss_dssp             EEECCTTCEECTTSSCEEC---
T ss_pred             eeECCCCCEECCCCCcCCCCCC
Confidence            999999999998 568988655

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=1e-33  Score=260.88  Aligned_cols=152  Identities=43%  Similarity=0.852  Sum_probs=140.7

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+.+++++..++.+|+|||+|+.+++|||+|+..++|+++++||+++++            ++..  .+.+|+||+++
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~------------~~~~--~~~~P~giav~  297 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA------------VISQ--GLPHPFAITVF  297 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEE------------EECS--SCSSEEEEEEE
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEE------------EEEC--CCCCceEEEEE
Confidence            799999999998999999999999999999999999999999999999987            7765  37899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCcccccccc--CCcccceecCCCCCCCeeeecCC
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVN--APCQQLCLLSPSSSTGYTCKCIA  158 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~~--~~CshlCl~~p~~~~~~~C~Cp~  158 (264)
                      +++|||+||..++|.+++|.+|+..+++...+..|++|+++|+.+||.+.|||..  ++|+||||+.|   .+++|+||+
T Consensus       298 ~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q~~~~n~C~~~ng~C~~lCl~~~---~~~~C~C~~  374 (386)
T 3v65_B          298 EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSG---QNYTCACPT  374 (386)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGSCCCCCTTTTSCTTSSSEEECCS---SSCEEECCT
T ss_pred             CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcCcCCcCccccCCCCCCceeeeCC---CCCeeECCC
Confidence            9999999999999999999999999988888999999999999999999999984  58999999997   489999999


Q ss_pred             CeEEcC-CCCCCC
Q psy17326        159 GFRVTK-DGRCVE  170 (264)
Q Consensus       159 G~~L~~-~~tC~~  170 (264)
                      ||+ .+ +++|.+
T Consensus       375 g~~-~~d~~~C~~  386 (386)
T 3v65_B          375 GFR-KINSHACAQ  386 (386)
T ss_dssp             TCB-CSSSSCCBC
T ss_pred             CCc-CCCCCccCC
Confidence            999 66 568963

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=1.6e-33  Score=274.60  Aligned_cols=152  Identities=30%  Similarity=0.621  Sum_probs=139.2

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+++++|+...+.||+|||||+.+++|||+|+..++|+++++||++|++            ++.+  .+.|||||+++
T Consensus       465 ~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~------------~~~~--~l~~P~glav~  530 (619)
T 3s94_A          465 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV------------LVED--KIPHIFGFTLL  530 (619)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE------------EEEC--CCCSSCCEEEE
T ss_pred             cCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE------------Eecc--CCCCcEEEEEE
Confidence            899999999998999999999999999999999999999999999999998            7765  47899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccc--cCCcccceecCCCCCCCeeeecCC
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIA  158 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~--~~~CshlCl~~p~~~~~~~C~Cp~  158 (264)
                      +++|||+||..++|++++|.+| +.+++...+..|++|++||+..|+ +.|+|.  |++|+|+|++.|   ++++|+||.
T Consensus       531 ~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~~~~~~~i~~~~~~~~~-~~~~C~~~ng~C~~~C~~~~---~~~~C~C~~  605 (619)
T 3s94_A          531 GDYVYWTDWQRRSIERVHKRSA-EREVIIDQLPDLMGLKATNVHRVI-GSNPCAEENGGCSHLCLYRP---QGLRCACPI  605 (619)
T ss_dssp             TTEEEEECTTSSCEEEEESSSC-CEEEEECSCCCEEEEEEEESSCCC-CCCGGGSGGGGCSSEEEEET---TEEEEECCT
T ss_pred             CCEEEEeecCCCeEEEEEcCCC-ceEEEecCCCCCceeeeccccccc-ccccCCCCCCChhHhhccCC---CCeEEECCC
Confidence            9999999999999999999999 567777788899999999988776 899997  469999999987   469999999


Q ss_pred             CeEEcC-CCCCCCC
Q psy17326        159 GFRVTK-DGRCVEE  171 (264)
Q Consensus       159 G~~L~~-~~tC~~~  171 (264)
                      ||.|.+ +++|.++
T Consensus       606 g~~l~~d~~~C~~p  619 (619)
T 3s94_A          606 GFELISDMKTCIVP  619 (619)
T ss_dssp             TCEECSSTTCEECC
T ss_pred             CCEECCCCCcCCCC
Confidence            999998 5689753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=5e-33  Score=271.43  Aligned_cols=154  Identities=24%  Similarity=0.436  Sum_probs=139.8

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+++++|+++++.||+|||||+.+++|||+|+..++|+++++||++|++            +..+  .+.||+||+++
T Consensus       463 ~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~------------~~~~--~~~~P~glav~  528 (628)
T 4a0p_A          463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIV------------LEDS--NILQPVGLTVF  528 (628)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EECS--SCSCEEEEEEE
T ss_pred             CCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEE------------EEcC--CCCCcEEEEEE
Confidence            899999999999999999999999999999999999999999999999997            6654  47899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCC-Cccccccc--cCCcccceecCCCCCCCeeeecC
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQ-PITRNDCV--NAPCQQLCLLSPSSSTGYTCKCI  157 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~q-p~~~npC~--~~~CshlCl~~p~~~~~~~C~Cp  157 (264)
                      +++|||+||..++|++++|.+|++.+.+...+..|++|+++|...| +.+.|||.  |++|+|||++.|.  ++++|+||
T Consensus       529 ~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~~~~~~~~i~~~~~~~~~~~~~n~c~~~ng~C~~~C~~~~~--~~~~C~C~  606 (628)
T 4a0p_A          529 ENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGD--GTTRCSCP  606 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSCCEEEECCCTTEEEEEEECCCCHHHHHHSTTTTGGGGCSSEEEECTT--SCEEEECC
T ss_pred             CCEEEEEECCCCeEEEEECcCCCCcEEEeccCCCCcceEEEeecccCccccccCCCCCCCcchhcccCCC--CCeeeeCC
Confidence            9999999999999999999999999988888889999999998665 45789997  4699999999874  47899999


Q ss_pred             CCeEEcC-CCCCCC
Q psy17326        158 AGFRVTK-DGRCVE  170 (264)
Q Consensus       158 ~G~~L~~-~~tC~~  170 (264)
                      .||.|.+ +++|-.
T Consensus       607 ~g~~l~~d~~~~~~  620 (628)
T 4a0p_A          607 MHLVLLQDELSCGG  620 (628)
T ss_dssp             TTEEECTTSSCEEE
T ss_pred             CCCEECCCCCcCCC
Confidence            9999998 468954

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.97  E-value=1.5e-31  Score=263.93  Aligned_cols=160  Identities=31%  Similarity=0.653  Sum_probs=143.8

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+.+++|+...+.+|+|||||+.+++|||+|+..++|++++++|++|++            ++.....+.+|++|+++
T Consensus       526 ~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~------------~~~~~~~~~~P~glavd  593 (699)
T 1n7d_A          526 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILEDEKRLAHPFSLAVF  593 (699)
T ss_dssp             SSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE------------ECCCSSSCSSCCCCEEE
T ss_pred             CCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE------------EEecCCcCCCceEeEEE
Confidence            789999999988999999999999999999999999999999999999998            76643457899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccc-----cCCcccceecCCC---CCCCe
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCV-----NAPCQQLCLLSPS---SSTGY  152 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~-----~~~CshlCl~~p~---~~~~~  152 (264)
                      +++|||+||..++|.++++++|+..++|...+.+|++|+|+|+.+||.+.|||.     |++||||||++|.   .+.+|
T Consensus       594 ~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~lCl~~p~~~~~~~~~  673 (699)
T 1n7d_A          594 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKF  673 (699)
T ss_dssp             TTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSSCCSCCSSCSSSCSSCSCTTCCBCCCCCTTCSCSC
T ss_pred             CCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccCCCCCCCccccCCCCCCCCcccCcCcccCCCCCCc
Confidence            999999999999999999999998888877788999999999999999999998     4589999998863   23479


Q ss_pred             eeecCCCeEEcC-CCCCCCCC
Q psy17326        153 TCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       153 ~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      +|+||+||+|.+ +++|.+.+
T Consensus       674 ~C~Cp~g~~l~~d~~~C~~~~  694 (699)
T 1n7d_A          674 TCACPDGMLLARDMRSCLTEA  694 (699)
T ss_dssp             BCCCCSSCEECSSTTCEECC-
T ss_pred             EEECcCCCEECCCCCccCCCC
Confidence            999999999998 56898764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.70  E-value=2.9e-15  Score=149.39  Aligned_cols=102  Identities=23%  Similarity=0.412  Sum_probs=86.2

Q ss_pred             CcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCC
Q psy17326          5 SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FED   82 (264)
Q Consensus         5 ~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d   82 (264)
                      ..++++...+..|.|||||+.+++|||+|...++|++++++|+.+++            ++..  .+..|.+|+|  .++
T Consensus       461 ~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~------------l~~~--~l~~P~gIaVDp~~g  526 (791)
T 3m0c_C          461 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT------------LFRE--NGSKPRAIVVDPVHG  526 (791)
T ss_dssp             -CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE------------EEEC--TTCCEEEEEEETTTT
T ss_pred             ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEE------------EEeC--CCCCcceEEEecCCC
Confidence            56788888999999999999999999999999999999999999988            7765  4788999999  468


Q ss_pred             EEEEEcCCC-CeEEEEEccCCceeEEE-eccCCCceeEEEe
Q psy17326         83 TLYWTDRQL-NRVLSAHKFRGKNQTVV-SHLISQPLSIHVH  121 (264)
Q Consensus        83 ~lYwtD~~~-~~i~~~~k~~g~~~~~i-~~~~~~p~~i~v~  121 (264)
                      +|||+||.. .+|.+++. .|..++++ ...+..|.||+|.
T Consensus       527 ~LYwtD~g~~~~I~~~~~-dG~~~~~lv~~~l~~P~GLavD  566 (791)
T 3m0c_C          527 FMYWTDWGTPAKIKKGGL-NGVDIYSLVTENIQWPNGITLD  566 (791)
T ss_dssp             EEEEEECSSSCEEEEEET-TSCCEEEEECSSCSCEEEEEEE
T ss_pred             CEEEecCCCCCeEEEEec-CCCceEEEEeCCCCCceEEEEe
Confidence            999999987 78888886 56666544 4467788888776

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.69  E-value=9e-15  Score=132.51  Aligned_cols=106  Identities=24%  Similarity=0.480  Sum_probs=88.6

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      +||+..+.++..++..|.|||+|+.+++|||+|...++|++++++|+.+++            ++..  .+..|.+|++.
T Consensus       102 ~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~------------l~~~--~l~~P~~iavd  167 (349)
T 3v64_C          102 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV------------LLWQ--SLEKPRAIALH  167 (349)
T ss_dssp             TTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EECT--TCSCEEEEEEE
T ss_pred             cCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE------------EEeC--CCCCcceEEEe
Confidence            578888888888899999999999999999999999999999999999887            6654  47899999996


Q ss_pred             --CCEEEEEcCCC-CeEEEEEccCCceeEEEe-ccCCCceeEEEe
Q psy17326         81 --EDTLYWTDRQL-NRVLSAHKFRGKNQTVVS-HLISQPLSIHVH  121 (264)
Q Consensus        81 --~d~lYwtD~~~-~~i~~~~k~~g~~~~~i~-~~~~~p~~i~v~  121 (264)
                        +++|||+||.. .+|++++. +|..++++. ..+..|.||++.
T Consensus       168 p~~g~ly~td~~~~~~I~r~~~-dG~~~~~~~~~~~~~PnGla~d  211 (349)
T 3v64_C          168 PMEGTIYWTDWGNTPRIEASSM-DGSGRRIIADTHLFWPNGLTID  211 (349)
T ss_dssp             TTTTEEEEEECSSSCEEEEEET-TSCSCEESCCSSCSCEEEEEEE
T ss_pred             cCcCeEEEeccCCCCEEEEEeC-CCCCcEEEEECCCCCcceEEEe
Confidence              78999999998 89999986 455555443 355666666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.65  E-value=2.9e-14  Score=130.82  Aligned_cols=106  Identities=24%  Similarity=0.478  Sum_probs=89.2

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      +||+..++++...+..|+|||+|+.+++|||+|...++|++++++|+.+++            ++..  .+..|.+|++.
T Consensus       145 ~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~------------l~~~--~l~~P~giavd  210 (386)
T 3v65_B          145 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV------------LLWQ--SLEKPRAIALH  210 (386)
T ss_dssp             TTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE------------EECS--SCSCEEEEEEE
T ss_pred             cCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE------------eecC--CCCCCcEEEEE
Confidence            578888888888899999999999999999999999999999999999887            6654  47899999996


Q ss_pred             --CCEEEEEcCCC-CeEEEEEccCCceeEEE-eccCCCceeEEEe
Q psy17326         81 --EDTLYWTDRQL-NRVLSAHKFRGKNQTVV-SHLISQPLSIHVH  121 (264)
Q Consensus        81 --~d~lYwtD~~~-~~i~~~~k~~g~~~~~i-~~~~~~p~~i~v~  121 (264)
                        +++|||+||.. .+|++++. +|..++++ ...+..|.||++.
T Consensus       211 p~~g~ly~td~~~~~~I~r~~~-dG~~~~~~~~~~~~~PnGlavd  254 (386)
T 3v65_B          211 PMEGTIYWTDWGNTPRIEASSM-DGSGRRIIADTHLFWPNGLTID  254 (386)
T ss_dssp             TTTTEEEEEECSSSCEEEEEET-TSCSCEEEECSSCSCEEEEEEE
T ss_pred             cCCCeEEEeccCCCCEEEEEeC-CCCCcEEEEECCCCCeeeEEEe
Confidence              78999999998 88999986 45555444 4456677777765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.65  E-value=5.1e-14  Score=129.94  Aligned_cols=169  Identities=20%  Similarity=0.308  Sum_probs=118.9

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCC----ceeEeEEEeecccceeEEeCCccccccee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGT----SRQQDTLYWTDRQLNRVVAGSHYLLHPHS   76 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~----~r~~~~lfwtd~~~~~vl~~~~~l~~P~~   76 (264)
                      +||.+.+.++. .+..|.||++|+.+++|||+|...++|.+++++|.    ...+            ++..  .+..|.|
T Consensus        99 l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~------------~~~~--~~~~p~g  163 (400)
T 3p5b_L           99 LDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------VISR--DIQAPDG  163 (400)
T ss_dssp             TTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE------------EECS--SCSCEEE
T ss_pred             cCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE------------EEeC--CCCCccc
Confidence            46666666664 78999999999999999999999999999999994    4555            5554  4789999


Q ss_pred             eeee--CCEEEEEcCCCCeEEEEEccCCceeE-EEeccCCCceeEEEecccCCCccccccccCCcccceecCCCCCCCee
Q psy17326         77 LTIF--EDTLYWTDRQLNRVLSAHKFRGKNQT-VVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYT  153 (264)
Q Consensus        77 l~v~--~d~lYwtD~~~~~i~~~~k~~g~~~~-~i~~~~~~p~~i~v~~~~~qp~~~npC~~~~CshlCl~~p~~~~~~~  153 (264)
                      |++-  ++.|||+|+..+.|.+++.. |..++ ++...+..|.+|+|...                          +   
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~--------------------------~---  213 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPV--------------------------H---  213 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEEECSSCCEEEEEEETT--------------------------T---
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCC-CCceEEEEeCCCCCcceEEEecc--------------------------c---
Confidence            9994  89999999999999988864 55444 44446777888877510                          0   


Q ss_pred             eecCCCeEEcCCCCCCCCCccEEEEEe---CCeEEEEEcCCCCCCCcceeEeeeCceeEEeeeCCCCCCCceEEEecCCC
Q psy17326        154 CKCIAGFRVTKDGRCVEEETPVLLVMK---GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVE  230 (264)
Q Consensus       154 C~Cp~G~~L~~~~tC~~~~~~~ll~~~---~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (264)
                                          .+|.++.   ...|.++.++                        -   +....+...++.
T Consensus       214 --------------------g~ly~td~~~~~~I~~~~~d------------------------G---~~~~~~~~~~l~  246 (400)
T 3p5b_L          214 --------------------GFMYWTDWGTPAKIKKGGLN------------------------G---VDIYSLVTENIQ  246 (400)
T ss_dssp             --------------------TEEEEEECSSSCCEEEEETT------------------------S---CSCEEEECSSCS
T ss_pred             --------------------CeEEEEeCCCCCEEEEEeCC------------------------C---CccEEEEECCCC
Confidence                                1333333   2356666432                        1   112233334677


Q ss_pred             CcEEEEEECCCCEEEEEeCCC-eeec--cCCCCC
Q psy17326        231 NGLQVEFDKKAAMLYWLEGTK-KANE--EDGGNE  261 (264)
Q Consensus       231 ~~~~id~D~~~~~iYW~D~~~-~~~~--~~~~~~  261 (264)
                      .+.+|++|+.+++|||+|... +|.+  +||++.
T Consensus       247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            899999999999999999654 5554  677663

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.56  E-value=1.7e-12  Score=115.70  Aligned_cols=105  Identities=24%  Similarity=0.421  Sum_probs=78.1

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCC----CceeEeEEEeecccceeEEeCCccccccee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDG----TSRQQDTLYWTDRQLNRVVAGSHYLLHPHS   76 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG----~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~   76 (264)
                      +++.+...++. .+..|.|+++|+.+++|||+|...++|.+++++|    +..+.            ++..  .+..|.+
T Consensus        17 ~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~------------~~~~--~~~~p~g   81 (316)
T 1ijq_A           17 LDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------VISR--DIQAPDG   81 (316)
T ss_dssp             TTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE------------EECS--SCSCCCE
T ss_pred             CCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE------------EEeC--CCCCcCE
Confidence            35555566665 6889999999999999999999999999999998    55554            5543  3678999


Q ss_pred             eee--eCCEEEEEcCCCCeEEEEEccCCceeEEE-eccCCCceeEEEe
Q psy17326         77 LTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVV-SHLISQPLSIHVH  121 (264)
Q Consensus        77 l~v--~~d~lYwtD~~~~~i~~~~k~~g~~~~~i-~~~~~~p~~i~v~  121 (264)
                      |++  .++.|||+|...+.|.+++. .|+..+++ ...+..|.+|++.
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~~~P~~iavd  128 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADT-KGVKRKTLFRENGSKPRAIVVD  128 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEET-TSSSEEEEEECTTCCEEEEEEE
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeC-CCCceEEEEECCCCCcceEEeC
Confidence            999  47899999999999998886 45544443 3355667777654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.55  E-value=8.4e-14  Score=124.82  Aligned_cols=107  Identities=24%  Similarity=0.471  Sum_probs=92.9

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCC-CCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESK-LDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI   79 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~-~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v   79 (264)
                      +||+.+++++...+..|+||++|+..++|||+|.. ..+|+++++||+.+++            ++..  .+..|.||++
T Consensus       108 ~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~------------~~~~--~l~~Pnglav  173 (318)
T 3sov_A          108 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI------------IINS--EIYWPNGLTL  173 (318)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE------------EECS--SCSCEEEEEE
T ss_pred             CCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE------------EEEC--CCCCccEEEE
Confidence            58999999998899999999999999999999975 6899999999999987            6654  4789999999


Q ss_pred             e--CCEEEEEcCCCCeEEEEEccCCceeEEEec-cCCCceeEEEec
Q psy17326         80 F--EDTLYWTDRQLNRVLSAHKFRGKNQTVVSH-LISQPLSIHVHH  122 (264)
Q Consensus        80 ~--~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~-~~~~p~~i~v~~  122 (264)
                      -  +++|||+|+..+.|++++. +|.+++++.. .+..|++|+++.
T Consensus       174 d~~~~~lY~aD~~~~~I~~~d~-dG~~~~~~~~~~~~~P~glav~~  218 (318)
T 3sov_A          174 DYEEQKLYWADAKLNFIHKSNL-DGTNRQAVVKGSLPHPFALTLFE  218 (318)
T ss_dssp             ETTTTEEEEEETTTTEEEEEET-TSCSCEEEECSCCSCEEEEEEET
T ss_pred             eccCCEEEEEECCCCEEEEEcC-CCCceEEEecCCCCCceEEEEeC
Confidence            4  8999999999999999996 5666665544 688999999874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.51  E-value=4.1e-13  Score=115.77  Aligned_cols=107  Identities=22%  Similarity=0.359  Sum_probs=93.4

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      +||+.++++....+.+|+||++|+..++|||+|...++|.+++++|..++.            ++..   +.+|++|++.
T Consensus       153 ~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~------------~~~~---~~~P~gi~~d  217 (267)
T 1npe_A          153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK------------VLEG---LQYPFAVTSY  217 (267)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE------------EEEC---CCSEEEEEEE
T ss_pred             cCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE------------EecC---CCCceEEEEe
Confidence            588888888877889999999999999999999999999999999988776            6553   6799999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEecc-CCCceeEEEec
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHL-ISQPLSIHVHH  122 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~-~~~p~~i~v~~  122 (264)
                      +++|||+|+..+.|.+++..+|+..+.+..+ ...|++|++..
T Consensus       218 ~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~  260 (267)
T 1npe_A          218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence            9999999999999999999888877776544 34699998873

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.44  E-value=4.7e-11  Score=102.75  Aligned_cols=91  Identities=29%  Similarity=0.546  Sum_probs=74.6

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      +||...+.++...+..|+||++|+.+++|||+|...++|.+++++|+.+++            ++..  .+..|.+|++.
T Consensus        65 ~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~------------~~~~--~~~~P~~i~vd  130 (267)
T 1npe_A           65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV------------LFDT--GLVNPRGIVTD  130 (267)
T ss_dssp             SSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EECS--SCSSEEEEEEE
T ss_pred             cCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE------------EEEC--CCCCccEEEEe
Confidence            467777777777788999999999999999999999999999999998776            5543  35789999995


Q ss_pred             --CCEEEEEcCC--CCeEEEEEccCCceeE
Q psy17326         81 --EDTLYWTDRQ--LNRVLSAHKFRGKNQT  106 (264)
Q Consensus        81 --~d~lYwtD~~--~~~i~~~~k~~g~~~~  106 (264)
                        +++|||+|+.  ...|.+++. +|...+
T Consensus       131 ~~~g~lyv~~~~~~~~~I~~~~~-dg~~~~  159 (267)
T 1npe_A          131 PVRGNLYWTDWNRDNPKIETSHM-DGTNRR  159 (267)
T ss_dssp             TTTTEEEEEECCSSSCEEEEEET-TSCCCE
T ss_pred             eCCCEEEEEECCCCCcEEEEEec-CCCCcE
Confidence              6899999987  467877775 454443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.25  E-value=1.1e-11  Score=110.36  Aligned_cols=85  Identities=11%  Similarity=0.228  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEE-eCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFA-ESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI   79 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~-D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v   79 (264)
                      |||+++++|+++.+  |   .+|+.+++|||+ |+..+.|+++++||++|+.            +..+     ...+|++
T Consensus       214 ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~------------l~~~-----~~~~i~i  271 (302)
T 3s25_A          214 INNPNPVVLTEANI--E---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKE------------LAKG-----EFCNINV  271 (302)
T ss_dssp             SSSCCCEECSCSCE--E---EEEEETTEEEEEECSSSCEEEEEETTSCCCEE------------EEES-----CEEEEEE
T ss_pred             CCCCCeEEEeCCCc--c---eEEECCCEEEEEECCCCcEEEEEECCCCccEE------------eeCC-----ccceEEE
Confidence            68888888876555  2   367778888886 5567888888888888876            5553     2458999


Q ss_pred             eCCEEEEEcCCCCeEEEEEccCCceeEEE
Q psy17326         80 FEDTLYWTDRQLNRVLSAHKFRGKNQTVV  108 (264)
Q Consensus        80 ~~d~lYwtD~~~~~i~~~~k~~g~~~~~i  108 (264)
                      ++|+|||+||.++.|++++ .+|++.+.|
T Consensus       272 ~~d~Iy~td~~~~~i~~~~-~dGs~~~~l  299 (302)
T 3s25_A          272 TSQYVYFTDFVSNKEYCTS-TQNPDTIKA  299 (302)
T ss_dssp             CSSEEEEEETTTCCEEEEE-SSSCCSCEE
T ss_pred             eCCEEEEEECCCCeEEEEE-CCCCCceEe
Confidence            9999999999999999986 577765443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.23  E-value=1.5e-11  Score=121.25  Aligned_cols=107  Identities=20%  Similarity=0.348  Sum_probs=89.8

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCC-CeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKL-DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI   79 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~-~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v   79 (264)
                      +||..+++++...+..|+|||||+..++|||+|... .+|++++++|+.+++            ++..  .+..|.||++
T Consensus       482 ~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~------------l~~~--~l~~PnGlav  547 (699)
T 1n7d_A          482 TKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS------------LVTE--NIQWPNGITL  547 (699)
T ss_dssp             SSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE------------ESCS--SCSSCCCEEE
T ss_pred             cCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE------------EEeC--CCCCccEEEE
Confidence            578888888888899999999999999999999875 899999999999887            6554  4789999999


Q ss_pred             e--CCEEEEEcCCCCeEEEEEccCCceeEEEec---cCCCceeEEEec
Q psy17326         80 F--EDTLYWTDRQLNRVLSAHKFRGKNQTVVSH---LISQPLSIHVHH  122 (264)
Q Consensus        80 ~--~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~---~~~~p~~i~v~~  122 (264)
                      -  +++|||+|+..+.|.+++. .|..++++..   .+..|++|+++.
T Consensus       548 d~~~~~LY~aD~~~~~I~~~d~-dG~~~~~~~~~~~~~~~P~glavd~  594 (699)
T 1n7d_A          548 DLLSGRLYWVDSKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVFE  594 (699)
T ss_dssp             CTTTCCEEEEETTTTEEEEECS-SSSCCEEECCCSSSCSSCCCCEEET
T ss_pred             eccCCEEEEEecCCCeEEEEcc-CCCceEEEEecCCcCCCceEeEEEC
Confidence            4  7899999999999999986 4666665543   357788988764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.85  E-value=2.2e-08  Score=89.04  Aligned_cols=99  Identities=12%  Similarity=0.275  Sum_probs=69.6

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE--------------eEEEeeccc----c-
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ--------------DTLYWTDRQ----L-   61 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~--------------~~lfwtd~~----~-   61 (264)
                      +||++++.|.....     +++|+..+.|||++.....|++++++|+.++.              +.|||+++.    | 
T Consensus       136 ~dGs~~~~lt~~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~~~~~P~g~~iy~t~~~~~~~I~  210 (302)
T 3s25_A          136 IDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNRDNAIV  210 (302)
T ss_dssp             TTSCCCEEEESSCC-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEEEEEEEETTEEEEEEGGGTTEEE
T ss_pred             CCCCCeEEEeCCCc-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCccceeeecCCEEEEEEcCCCcEEE
Confidence            68999999987654     45788899999999988999999999998765              567888764    2 


Q ss_pred             --------eeEEeCCcccccceeeeeeCCEEEEE-cCCCCeEEEEEccCCceeEEEe
Q psy17326         62 --------NRVVAGSHYLLHPHSLTIFEDTLYWT-DRQLNRVLSAHKFRGKNQTVVS  109 (264)
Q Consensus        62 --------~~vl~~~~~l~~P~~l~v~~d~lYwt-D~~~~~i~~~~k~~g~~~~~i~  109 (264)
                              +++|.+. .+  |. ++..+++|||+ |.....|++++. +|..++.|.
T Consensus       211 ~~~ldG~~~~~Lt~~-~~--~~-~~~~g~~Iy~~~~~~~~~i~~~~~-DG~~r~~l~  262 (302)
T 3s25_A          211 HVNINNPNPVVLTEA-NI--EH-YNVYGSLIFYQRGGDNPALCVVKN-DGTGFKELA  262 (302)
T ss_dssp             EECSSSCCCEECSCS-CE--EE-EEEETTEEEEEECSSSCEEEEEET-TSCCCEEEE
T ss_pred             EEECCCCCeEEEeCC-Cc--ce-EEECCCEEEEEECCCCcEEEEEEC-CCCccEEee
Confidence                    1233321 12  33 67778888886 444556777765 555555544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=4.6e-06  Score=77.28  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=52.6

Q ss_pred             CCCCccEEEEeC-CCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcC
Q psy17326         13 KIYWPNGLTLDI-ATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDR   89 (264)
Q Consensus        13 ~l~~P~gLaiD~-~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~   89 (264)
                      .+..|.+|++|+ ..++||++|.. ++|.++++++...+.            +..   ...+|.+|++.  +++||++|+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~------------~~~---~~~~P~~ia~d~~G~~lyvad~  198 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST------------VYS---GLSKVRTICWTHEADSMIITND  198 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE------------EEC---CCSCEEEEEECTTSSEEEEEEC
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE------------Eec---CCCCcceEEEeCCCCEEEEEeC
Confidence            478999999998 58999999998 999999999877665            444   36789999984  557999998


Q ss_pred             CC
Q psy17326         90 QL   91 (264)
Q Consensus        90 ~~   91 (264)
                      ..
T Consensus       199 ~~  200 (430)
T 3tc9_A          199 QN  200 (430)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.40  E-value=1e-07  Score=66.17  Aligned_cols=42  Identities=26%  Similarity=0.601  Sum_probs=33.7

Q ss_pred             cccccc--cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCCC
Q psy17326        129 TRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       129 ~~npC~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      ..|+|.  +++|+|+|+..+.  ++|+|+|+.||.|.+ +++|.+..
T Consensus         4 d~~eC~~~nggC~h~C~n~~g--~s~~C~C~~Gy~L~~D~~tC~d~d   48 (69)
T 1kli_L            4 DQLICVNENGGCEQYCSDHTG--TKRSCRCHEGYSLLADGVSCTPTV   48 (69)
T ss_dssp             CCCCTTSGGGGCSSEEEEETT--TEEEEECCTTEEECTTSSCEEECS
T ss_pred             ccccccCCCCCcCCEeEcCCC--CCEEEeCCCCCeECCCCCcccCcc
Confidence            358897  4699999999862  269999999999998 46897653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.39  E-value=2.8e-05  Score=71.35  Aligned_cols=74  Identities=14%  Similarity=0.053  Sum_probs=57.5

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQ   90 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~   90 (264)
                      .+..|.+|++|. .++|||+|...++|.+.++++....+            +...   ...|. +++  -++.|||+|..
T Consensus       129 ~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~------------~~~~---~~~~~-ia~~~~g~~l~~~d~~  191 (409)
T 3hrp_A          129 KFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTT------------VHPG---FKGGK-PAVTKDKQRVYSIGWE  191 (409)
T ss_dssp             CCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEE------------EEET---CCBCB-CEECTTSSEEEEEBSS
T ss_pred             ccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEE------------eecc---CCCCc-eeEecCCCcEEEEecC
Confidence            478999999995 57799999999999999999877665            5543   23455 665  56799999997


Q ss_pred             CC-eEEEEEccCCc
Q psy17326         91 LN-RVLSAHKFRGK  103 (264)
Q Consensus        91 ~~-~i~~~~k~~g~  103 (264)
                      .. .|++++..++.
T Consensus       192 ~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          192 GTHTVYVYMKASGW  205 (409)
T ss_dssp             TTCEEEEEEGGGTT
T ss_pred             CCceEEEEEcCCCc
Confidence            65 78888875443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.36  E-value=1.9e-05  Score=73.27  Aligned_cols=63  Identities=8%  Similarity=0.071  Sum_probs=49.9

Q ss_pred             CCCCccEEEEeC--CCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-eCCEEEEEcC
Q psy17326         13 KIYWPNGLTLDI--ATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTLYWTDR   89 (264)
Q Consensus        13 ~l~~P~gLaiD~--~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~lYwtD~   89 (264)
                      .+..|.||++|+  ..++|||+|.. ++|.++++.+....+            +..   .+.+|.+|++ -.+.||++|+
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~------------~~~---~~~~P~giavd~dG~lyVad~  200 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI------------KTT---NIGQCADVNFTLNGDMVVVDD  200 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE------------ECC---CCSCEEEEEECTTCCEEEEEC
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE------------eec---CCCCccEEEECCCCCEEEEcC
Confidence            678999999998  47999999998 999999996555544            333   3678999999 3345999997


Q ss_pred             CC
Q psy17326         90 QL   91 (264)
Q Consensus        90 ~~   91 (264)
                      ..
T Consensus       201 ~~  202 (433)
T 4hw6_A          201 QS  202 (433)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=98.23  E-value=4.1e-07  Score=59.73  Aligned_cols=36  Identities=25%  Similarity=0.612  Sum_probs=29.2

Q ss_pred             cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCCC
Q psy17326        135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       135 ~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      +++|+|+|+..+.  ++|+|+|+.||+|.+ +++|.+..
T Consensus         6 nggC~~~C~n~~g--gs~~C~C~~Gy~L~~Dg~tC~d~d   42 (53)
T 2bz6_L            6 NGGCEQYCSDHTG--TKRSCRCHEGYSLLADGVSCTPTV   42 (53)
T ss_dssp             GGGCSSEEEEETT--TEEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCcCCEeEcCCC--CCEEeeCCCCCEECCCCCcccCCc
Confidence            4689999999862  259999999999998 46897643

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.21  E-value=5.1e-07  Score=59.69  Aligned_cols=39  Identities=23%  Similarity=0.704  Sum_probs=32.0

Q ss_pred             cccc--cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCCC
Q psy17326        131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       131 npC~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      ++|.  +++|+|+|+..+   ++|+|.|+.||+|.. +++|.+..
T Consensus         2 dEC~~~~~~C~~~C~nt~---Gsy~C~C~~Gy~L~~d~~~C~did   43 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQ---NSVVCSCARGYTLADNGKACIPTG   43 (55)
T ss_dssp             CCTTTGGGGCSSEEEEET---TEEEEECCTTEEECTTSSCEEESS
T ss_pred             ccccCCCCCcCcEeEcCC---CCeEEeCCCCCEECCCCCeeccCc
Confidence            5676  358999999986   689999999999988 46897643

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=98.21  E-value=7.2e-07  Score=59.87  Aligned_cols=35  Identities=29%  Similarity=0.776  Sum_probs=29.2

Q ss_pred             cCCcccceecCCCCCCCeeeecCCCeEEcCC-CCCCCC
Q psy17326        135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKD-GRCVEE  171 (264)
Q Consensus       135 ~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~-~tC~~~  171 (264)
                      +++|+|+|+..+.  ++|+|+|+.||.|.++ ++|.+.
T Consensus         6 nggC~~~C~n~~~--gs~~C~C~~Gy~L~~D~~tC~d~   41 (59)
T 2wph_E            6 NGRCEQFCKNSAD--NKVVCSCTEGYRLAENQKSCEPA   41 (59)
T ss_dssp             GGGCSSEEEECST--TCEEEECCTTEEECTTSSCEEES
T ss_pred             CCCcCCEeEeCCC--CCEEeeCCCCcEECCCCCcccCC
Confidence            4689999999862  4899999999999984 689764

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=98.16  E-value=5.1e-07  Score=58.78  Aligned_cols=35  Identities=29%  Similarity=0.716  Sum_probs=29.4

Q ss_pred             cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCCC
Q psy17326        135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       135 ~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      +++|+|+|+..+   ++|+|.|+.||+|.+ +++|.+..
T Consensus         5 ng~C~~~C~n~~---gs~~C~C~~Gy~L~~d~~tC~did   40 (51)
T 1kig_L            5 NGGCDQFCREER---SEVRCSCAHGYVLGDDSKSCVSTE   40 (51)
T ss_dssp             TTSSSSCCCEET---TEECCCCCTTEEECTTSSCEEECS
T ss_pred             CCCcCCEeEcCC---CCeEEeCCCCcEECCCCCccccCC
Confidence            458999999986   689999999999988 46897643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=3.7e-05  Score=71.09  Aligned_cols=90  Identities=12%  Similarity=0.192  Sum_probs=61.0

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEe--EEEeeccc---ceeEEeCCcccccce-eeeeeC-----
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQD--TLYWTDRQ---LNRVVAGSHYLLHPH-SLTIFE-----   81 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~--~lfwtd~~---~~~vl~~~~~l~~P~-~l~v~~-----   81 (264)
                      ...+|+||++|+..++|||+|...++|.+.++||...+..  ..+-..++   ...-......+.+|. ++++.+     
T Consensus       268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~  347 (430)
T 3tc9_A          268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKG  347 (430)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTT
T ss_pred             CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccc
Confidence            4468999999999889999999999999999998632110  00100000   000000011367899 888854     


Q ss_pred             ----CEEEEEcCCCCeEEEEEccCCc
Q psy17326         82 ----DTLYWTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        82 ----d~lYwtD~~~~~i~~~~k~~g~  103 (264)
                          +.||++|+..++|.+++. +|.
T Consensus       348 ~D~~g~lyvaD~~n~~I~~i~~-~G~  372 (430)
T 3tc9_A          348 SSDEYDFYFCDRENHCIRILTP-QGR  372 (430)
T ss_dssp             SSCCEEEEEEEGGGTEEEEECT-TSE
T ss_pred             cCCCCeEEEEECCCcEEEEECC-CCc
Confidence                599999999999988874 453

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.05  E-value=0.00026  Score=59.33  Aligned_cols=93  Identities=20%  Similarity=0.237  Sum_probs=65.2

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQL   91 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~~   91 (264)
                      .+..|.+|++|.. ++||+++. .+.|.+.+.+|.....            +...  ....|.+|++. .+.||+++...
T Consensus        65 ~~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~~~~~------------~~~~--~~~~p~~i~~~~~g~l~v~~~~~  128 (270)
T 1rwi_B           65 GLYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSNNQTV------------LPFD--GLNYPEGLAVDTQGAVYVADRGN  128 (270)
T ss_dssp             SCCSCCCEEECTT-CCEEEEET-TTEEEEECTTCSCCEE------------CCCC--SCSSEEEEEECTTCCEEEEEGGG
T ss_pred             CcCCcceeEECCC-CCEEEEcC-CCEEEEEeCCCceEee------------eecC--CcCCCcceEECCCCCEEEEECCC
Confidence            4568999999985 56999998 7899999999876654            2222  34689999995 56899999888


Q ss_pred             CeEEEEEccCCceeEEEeccCCCceeEEEe
Q psy17326         92 NRVLSAHKFRGKNQTVVSHLISQPLSIHVH  121 (264)
Q Consensus        92 ~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~  121 (264)
                      +.|.+++..+.............|.+|.+.
T Consensus       129 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~  158 (270)
T 1rwi_B          129 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  158 (270)
T ss_dssp             TEEEEECTTCCSCEECCCCSCCSCCCEEEC
T ss_pred             CEEEEEECCCceeEeeccccCCCceeEEEe
Confidence            888888542222222122234567777664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.99  E-value=9.2e-05  Score=67.85  Aligned_cols=75  Identities=15%  Similarity=0.223  Sum_probs=59.0

Q ss_pred             cc-EEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC------------cccccceeeeee-CC
Q psy17326         17 PN-GLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS------------HYLLHPHSLTIF-ED   82 (264)
Q Consensus        17 P~-gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~------------~~l~~P~~l~v~-~d   82 (264)
                      |. +|++|+..++||++|...++|.+.+++|.-. +            +....            ..+.+|.+|++. ++
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~------------~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-W------------FCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-E------------EEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-E------------EEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence            55 9999998999999999999999999999832 2            22110            125689999995 45


Q ss_pred             EEEEEcC-CCCeEEEEEccCCce
Q psy17326         83 TLYWTDR-QLNRVLSAHKFRGKN  104 (264)
Q Consensus        83 ~lYwtD~-~~~~i~~~~k~~g~~  104 (264)
                      .||++|+ ..++|.+++..+|.-
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTEE
T ss_pred             CEEEEeCCCCCEEEEEECCCCEE
Confidence            7999999 999999998656653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.94  E-value=0.00018  Score=63.20  Aligned_cols=84  Identities=18%  Similarity=0.162  Sum_probs=66.9

Q ss_pred             CCCCccEEEEeCCCCeEEEEeC-CCCeEEEEecCCCceeEeEEEeecccceeEEeC-------CcccccceeeeeeC--C
Q psy17326         13 KIYWPNGLTLDIATRRVYFAES-KLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG-------SHYLLHPHSLTIFE--D   82 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~-~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~-------~~~l~~P~~l~v~~--d   82 (264)
                      .+..|++|++|+.+++||++|. ..++|...+.+|...+.            +-..       ...+..|.+|++..  +
T Consensus       141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~------------~~~~g~~~~~~~~~~~~p~gia~d~~~g  208 (329)
T 3fvz_A          141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ------------WGEESSGSSPRPGQFSVPHSLALVPHLD  208 (329)
T ss_dssp             CCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE------------ECEECCSSSCCTTEESCEEEEEEETTTT
T ss_pred             ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE------------eccCCCCCCCCCcccCCCcEEEEECCCC
Confidence            4668999999998899999997 68999999999987664            2211       11356799999953  7


Q ss_pred             EEEEEcCCCCeEEEEEccCCceeEEE
Q psy17326         83 TLYWTDRQLNRVLSAHKFRGKNQTVV  108 (264)
Q Consensus        83 ~lYwtD~~~~~i~~~~k~~g~~~~~i  108 (264)
                      .||++|+..++|...+..+|+....+
T Consensus       209 ~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          209 QLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEE
Confidence            99999999999999987667665554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.93  E-value=6.2e-05  Score=65.23  Aligned_cols=97  Identities=22%  Similarity=0.272  Sum_probs=69.2

Q ss_pred             eCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC---CC--ceeEeEEEeecccceeEEeCCcccccceeeee-eCCEE
Q psy17326         11 STKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD---GT--SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTL   84 (264)
Q Consensus        11 ~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld---G~--~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~l   84 (264)
                      ...+..|+||++++..+.|||+|...++|.+.++|   |.  +++.            +..-......|.+|++ -++.|
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~------------~~~~~~~~~~p~g~~~d~~G~l  212 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS------------VYKLEKEEQIPDGMCIDAEGKL  212 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE------------EEECCGGGCEEEEEEEBTTSCE
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE------------EEECCCCCCCCCeeEECCCCCE
Confidence            34677899999999999999999999999999986   32  2332            2221112357999999 45689


Q ss_pred             EEEcCCCCeEEEEEccCCceeEEEeccCCCceeEE
Q psy17326         85 YWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIH  119 (264)
Q Consensus        85 YwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~  119 (264)
                      |.+++..+.|.+.+..+|+....+......|..++
T Consensus       213 wva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~  247 (297)
T 3g4e_A          213 WVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCC  247 (297)
T ss_dssp             EEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEE
T ss_pred             EEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEE
Confidence            99999888899999877776555543333344443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.91  E-value=0.00017  Score=66.79  Aligned_cols=90  Identities=12%  Similarity=0.075  Sum_probs=60.5

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEe--EEEeeccc---ceeEEeCCcccccceeeee--------
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQD--TLYWTDRQ---LNRVVAGSHYLLHPHSLTI--------   79 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~--~lfwtd~~---~~~vl~~~~~l~~P~~l~v--------   79 (264)
                      ...++.+|++|+..++||++|...++|.++++|+...+..  ..+-...+   ...-......+.+|.+|++        
T Consensus       271 ~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~  350 (433)
T 4hw6_A          271 TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG  350 (433)
T ss_dssp             CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred             CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence            4567789999999989999999999999999996432110  00100000   0000000113678999999        


Q ss_pred             --eCCEEEEEcCCCCeEEEEEccCCc
Q psy17326         80 --FEDTLYWTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        80 --~~d~lYwtD~~~~~i~~~~k~~g~  103 (264)
                        .++.||++|+..++|.+++. +|.
T Consensus       351 dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          351 EEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             SSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             cCCCCcEEEEECCCCEEEEECC-CCC
Confidence              45689999999999988885 553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.83  E-value=0.0023  Score=55.31  Aligned_cols=83  Identities=12%  Similarity=0.117  Sum_probs=63.2

Q ss_pred             CCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-C
Q psy17326          3 ESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-E   81 (264)
Q Consensus         3 Gs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~   81 (264)
                      |...+.| .+...+++|.+.|...+.|||+|...+.|.+.+.+|.. ++            +...   ...|.++++. +
T Consensus        34 ~~~~~~l-~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~------------~~~~---~~~~~gl~~d~d   96 (305)
T 3dr2_A           34 DARLLTL-YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DV------------LLDA---TAFTNGNAVDAQ   96 (305)
T ss_dssp             TCCCEEE-ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EE------------EEES---CSCEEEEEECTT
T ss_pred             CCceEEE-ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EE------------EeCC---CCccceeeECCC
Confidence            3344444 45899999999999888999999999999999998763 32            2222   3578899984 5


Q ss_pred             CEEEEEcCCCCeEEEEEccCCc
Q psy17326         82 DTLYWTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        82 d~lYwtD~~~~~i~~~~k~~g~  103 (264)
                      +.||.++...+.|.+.+.. |+
T Consensus        97 G~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           97 QRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             SCEEEEETTTTEEEEECTT-SC
T ss_pred             CCEEEEECCCCEEEEECCC-CC
Confidence            6899998887888888863 54

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.78  E-value=0.00025  Score=62.27  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=68.1

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCc--eeEeEEEeecccceeEEeC-------Ccccccceeeeee--C
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTS--RQQDTLYWTDRQLNRVVAG-------SHYLLHPHSLTIF--E   81 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~--r~~~~lfwtd~~~~~vl~~-------~~~l~~P~~l~v~--~   81 (264)
                      .+..|.||++|. .++||++|...++|.+.+.+|..  ...             +..       ...+..|.+|++.  +
T Consensus        89 ~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~-------------~~~~~~~g~~~~~~~~P~~ia~~~~~  154 (329)
T 3fvz_A           89 LFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLI-------------LGRSMQPGSDQNHFCQPTDVAVEPST  154 (329)
T ss_dssp             TCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEE-------------ESBTTBCCCSTTCCSSEEEEEECTTT
T ss_pred             ccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEE-------------ecccCCCCCCccccCCCcEEEEeCCC
Confidence            456899999997 45699999999999999999984  332             211       1245689999996  6


Q ss_pred             CEEEEEcC-CCCeEEEEEccCCceeEEEec----------cCCCceeEEEe
Q psy17326         82 DTLYWTDR-QLNRVLSAHKFRGKNQTVVSH----------LISQPLSIHVH  121 (264)
Q Consensus        82 d~lYwtD~-~~~~i~~~~k~~g~~~~~i~~----------~~~~p~~i~v~  121 (264)
                      +.||++|. ..+.|.+.+. +|.....+..          .+..|.+|++.
T Consensus       155 g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d  204 (329)
T 3fvz_A          155 GAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALV  204 (329)
T ss_dssp             CCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEE
T ss_pred             CeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEE
Confidence            89999996 6788888884 5665554421          23346666654

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.77  E-value=1.3e-05  Score=52.02  Aligned_cols=32  Identities=31%  Similarity=0.809  Sum_probs=27.2

Q ss_pred             CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        136 APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       136 ~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      +.|+|.|+..+   ++|+|.|+.||.|.. +++|.+
T Consensus        20 ~~C~~~C~n~~---Gsy~C~C~~Gy~~~~d~~~C~~   52 (53)
T 1apq_A           20 PQCQHLCHNYV---GGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             CTTSSEEEEET---TEEEEECSTTCEECTTSSCEEC
T ss_pred             CCCCCEeECCC---CCeEEECCCCCeECCCCCccCC
Confidence            57999999986   689999999999987 467864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=0.00097  Score=62.92  Aligned_cols=67  Identities=7%  Similarity=-0.045  Sum_probs=54.5

Q ss_pred             CCCCccEEEEeC-CCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCc-ccccceeeee---------eC
Q psy17326         13 KIYWPNGLTLDI-ATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSH-YLLHPHSLTI---------FE   81 (264)
Q Consensus        13 ~l~~P~gLaiD~-~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~-~l~~P~~l~v---------~~   81 (264)
                      .+..|.+|++|+ ..++||.++...+.|.++++.+....+            ++.... .+..|.+|++         .+
T Consensus       137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~------------l~~~~~~~~~~p~~ia~~~~~~~~d~~G  204 (496)
T 3kya_A          137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS------------PLNINTIPTNRIRSIAFNKKIEGYADEA  204 (496)
T ss_dssp             CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE------------EECCTTSSCSBEEEEEECCCBTTTBCTT
T ss_pred             ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE------------EEccCccccCCCcEEEEeecccccCCCC
Confidence            477899999999 488999999888899999999888776            554321 3457999988         56


Q ss_pred             CEEEEEcCCC
Q psy17326         82 DTLYWTDRQL   91 (264)
Q Consensus        82 d~lYwtD~~~   91 (264)
                      ++||.+|+..
T Consensus       205 ~~lyvad~~~  214 (496)
T 3kya_A          205 EYMIVAIDYD  214 (496)
T ss_dssp             CEEEEEECCC
T ss_pred             CEEEEEeCCC
Confidence            6899999986

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.73  E-value=0.0046  Score=53.25  Aligned_cols=80  Identities=6%  Similarity=-0.090  Sum_probs=60.3

Q ss_pred             cEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEE
Q psy17326          6 RSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTL   84 (264)
Q Consensus         6 r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~l   84 (264)
                      .+.++.....+++|.+.|..+++|||+|...++|.+.+.++...+.             +..   -..|.+|++. .+.+
T Consensus         4 ~~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-------------~~~---~~~~~~i~~~~dG~l   67 (297)
T 3g4e_A            4 IECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-------------VTM---DAPVSSVALRQSGGY   67 (297)
T ss_dssp             EEEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-------------EEC---SSCEEEEEEBTTSSE
T ss_pred             EEEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-------------EeC---CCceEEEEECCCCCE
Confidence            4567778899999999999999999999999999999999866543             322   2467888874 3455


Q ss_pred             EEEcCCCCeEEEEEccCCc
Q psy17326         85 YWTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        85 YwtD~~~~~i~~~~k~~g~  103 (264)
                      |.+.  ..+|.+.+..+|+
T Consensus        68 ~v~~--~~~l~~~d~~~g~   84 (297)
T 3g4e_A           68 VATI--GTKFCALNWKEQS   84 (297)
T ss_dssp             EEEE--TTEEEEEETTTTE
T ss_pred             EEEE--CCeEEEEECCCCc
Confidence            5554  3578888765554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.71  E-value=0.00024  Score=59.58  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeCC-EEEEEcCCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFED-TLYWTDRQL   91 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d-~lYwtD~~~   91 (264)
                      .+..|++|++|.. ++||+++...+.|.+.+.+|.....            ....  .+..|.+|++..+ +||++++..
T Consensus       148 ~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~------------~~~~--~~~~p~~i~~d~~g~l~v~~~~~  212 (270)
T 1rwi_B          148 GLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVV------------LPFT--DITAPWGIAVDEAGTVYVTEHNT  212 (270)
T ss_dssp             SCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEE------------CCCS--SCCSEEEEEECTTCCEEEEETTT
T ss_pred             cCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEe------------eccc--CCCCceEEEECCCCCEEEEECCC
Confidence            4568999999984 5699999988999999999876554            2222  3578999999654 999999988


Q ss_pred             CeEEEEEcc
Q psy17326         92 NRVLSAHKF  100 (264)
Q Consensus        92 ~~i~~~~k~  100 (264)
                      +.|.+.+..
T Consensus       213 ~~v~~~~~~  221 (270)
T 1rwi_B          213 NQVVKLLAG  221 (270)
T ss_dssp             SCEEEECTT
T ss_pred             CcEEEEcCC
Confidence            888888764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.62  E-value=0.0092  Score=52.25  Aligned_cols=82  Identities=11%  Similarity=-0.022  Sum_probs=59.9

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC---cccccceeeeeeCCEEEEEcC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS---HYLLHPHSLTIFEDTLYWTDR   89 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~---~~l~~P~~l~v~~d~lYwtD~   89 (264)
                      ....|.+|+++.. ++||.++...+.|.+.+........            .+.-.   .....|.+|++.+++||-+++
T Consensus        82 ~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~------------~i~~g~~~~~~~~p~~i~~~~~~lyv~~~  148 (328)
T 3dsm_A           82 GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITG------------YIECPDMDMESGSTEQMVQYGKYVYVNCW  148 (328)
T ss_dssp             CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEE------------EEECTTCCTTTCBCCCEEEETTEEEEEEC
T ss_pred             CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEE------------EEEcCCccccCCCcceEEEECCEEEEEcC
Confidence            4678999999765 4999999778899999987544332            22211   012289999999999999999


Q ss_pred             C-CCeEEEEEccCCceeEE
Q psy17326         90 Q-LNRVLSAHKFRGKNQTV  107 (264)
Q Consensus        90 ~-~~~i~~~~k~~g~~~~~  107 (264)
                      . .+.|..++..+++....
T Consensus       149 ~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A          149 SYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             TTCCEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEE
Confidence            4 77888888776654433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.49  E-value=0.0018  Score=54.82  Aligned_cols=77  Identities=18%  Similarity=0.293  Sum_probs=59.5

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQL   91 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~~   91 (264)
                      ....|++|++|.. ++||.++...+.|...+.+|...+.             +.....+..|.+|++. ++.||.++...
T Consensus       119 ~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~-------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          119 ILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQNGNVLHK-------------FGCSKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             TCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEEEE-------------EECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cCCCceEEEEeCC-CCEEEEECCCCEEEEEcCCCCEEEE-------------eCCCCccCCcEEEEECCCCCEEEEECCC
Confidence            4568999999985 5799999988999999998875554             3221235689999995 46899999988


Q ss_pred             CeEEEEEccCCce
Q psy17326         92 NRVLSAHKFRGKN  104 (264)
Q Consensus        92 ~~i~~~~k~~g~~  104 (264)
                      +.|...+. +|..
T Consensus       185 ~~i~~~~~-~g~~  196 (286)
T 1q7f_A          185 HCVKVFNY-EGQY  196 (286)
T ss_dssp             TEEEEEET-TCCE
T ss_pred             CEEEEEcC-CCCE
Confidence            88888885 4443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.48  E-value=0.016  Score=51.86  Aligned_cols=76  Identities=13%  Similarity=0.046  Sum_probs=54.3

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeC---CcccccceeeeeeC---
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG---SHYLLHPHSLTIFE---   81 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~---~~~l~~P~~l~v~~---   81 (264)
                      .+|-+++..|.+|++++ .++||.+|.. ++|.+++-+|.  +.            +..-   ......|.+|++..   
T Consensus        22 ~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~G~--~~------------~~~~~v~~~g~~g~~gia~~pdf~   85 (354)
T 3a9g_A           22 SEVASDLEVPWSIAPLG-GGRYLVTERP-GRLVLISPSGK--KL------------VASFDVANVGEAGLLGLALHPEFP   85 (354)
T ss_dssp             EEEECSCSCEEEEEEEE-TTEEEEEETT-TEEEEECSSCE--EE------------EEECCCCCSTTCSEEEEEECTTTT
T ss_pred             EEEeCCCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCCCc--eE------------eeccceeecCCCceeeEEeCCCCC
Confidence            34456899999999998 5789999987 89999987776  33            2210   01246799999975   


Q ss_pred             --CEEEEEcCC---C----CeEEEEEc
Q psy17326         82 --DTLYWTDRQ---L----NRVLSAHK   99 (264)
Q Consensus        82 --d~lYwtD~~---~----~~i~~~~k   99 (264)
                        ++||.++..   .    .+|.++..
T Consensus        86 ~~g~lyv~~~~~~~~~~~~~~v~r~~~  112 (354)
T 3a9g_A           86 KKSWVYLYASYFAEGGHIRNRVIRGRL  112 (354)
T ss_dssp             TSCEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred             cCCEEEEEEeccCCCCCcceEEEEEEE
Confidence              499998763   2    45666654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.39  E-value=0.0021  Score=54.92  Aligned_cols=98  Identities=13%  Similarity=0.154  Sum_probs=72.2

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-eCCEEEE
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTLYW   86 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~lYw   86 (264)
                      ..+......|.|++.|...++|||++...+.|.+.+.++. .+.             +..  ....|.+|++ -.+.||+
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~-------------~~~--~~~~~~~l~~~~dg~l~v   84 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSP-------------EMH--PSHHQNGHCLNKQGHLIA   84 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEE-------------EES--SCSSEEEEEECTTCCEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEE-------------EEC--CCCCcceeeECCCCcEEE
Confidence            3445688999999999988889999999999999999988 443             333  2357899998 4568999


Q ss_pred             EcCCCCeEEEEEccCCceeEEEec----cCCCceeEEEe
Q psy17326         87 TDRQLNRVLSAHKFRGKNQTVVSH----LISQPLSIHVH  121 (264)
Q Consensus        87 tD~~~~~i~~~~k~~g~~~~~i~~----~~~~p~~i~v~  121 (264)
                      ++...+.|.+.+..+|+-..+...    ....|.+|++.
T Consensus        85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d  123 (296)
T 3e5z_A           85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA  123 (296)
T ss_dssp             EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC
T ss_pred             EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC
Confidence            998878899988767764433221    12345566543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=0.0019  Score=60.87  Aligned_cols=90  Identities=13%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE--eEEEeecccceeEEe---CCcccccce-eeeee------
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ--DTLYWTDRQLNRVVA---GSHYLLHPH-SLTIF------   80 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~--~~lfwtd~~~~~vl~---~~~~l~~P~-~l~v~------   80 (264)
                      .-.||.+|++|+..+.||.+|...++|.++++||.....  ..+|-..++..-...   ....+.+|. ++++.      
T Consensus       308 ~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~  387 (496)
T 3kya_A          308 DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTG  387 (496)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCS
T ss_pred             CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccc
Confidence            457899999999988899999999999999999865321  001111100000000   011467899 77774      


Q ss_pred             --CCEEEEEcCCCCeEEEEEccCCc
Q psy17326         81 --EDTLYWTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        81 --~d~lYwtD~~~~~i~~~~k~~g~  103 (264)
                        ++.||.+|+..++|.+++. +|.
T Consensus       388 ~~~g~lyVaD~~N~rIr~i~~-~G~  411 (496)
T 3kya_A          388 EEEYDFYFVDRLNFCVRKVTP-EGI  411 (496)
T ss_dssp             SCCEEEEEEEGGGTEEEEECT-TCB
T ss_pred             cCCCeEEEEECCCCEEEEEeC-CCC
Confidence              5699999999999988884 563

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.32  E-value=0.0028  Score=53.41  Aligned_cols=76  Identities=17%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             CCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCC
Q psy17326         12 TKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQ   90 (264)
Q Consensus        12 ~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~   90 (264)
                      .....|.+|++|. .++||+++...+.|.+.+.+|.....            .+..  ....|.+|++. .+.||+++..
T Consensus       185 ~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~------------~~~~--~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          185 TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEY------------DIPT--PNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEE------------ECSS--TTCCEEEEEECSTTCEEEEETT
T ss_pred             CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEE------------ECCC--CCCCceEEEECCCCCEEEeccC
Confidence            3567899999998 56899999988899999997765443            2322  35689999985 5689999988


Q ss_pred             CCeEEEEEccCCc
Q psy17326         91 LNRVLSAHKFRGK  103 (264)
Q Consensus        91 ~~~i~~~~k~~g~  103 (264)
                      .+.|.+.+. +|.
T Consensus       250 ~~~i~~~~~-~g~  261 (300)
T 2qc5_A          250 ANQIGRITN-DNT  261 (300)
T ss_dssp             TTEEEEECT-TSC
T ss_pred             CCeEEEECC-CCc
Confidence            888988887 454

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.24  E-value=0.013  Score=52.38  Aligned_cols=78  Identities=6%  Similarity=-0.046  Sum_probs=50.3

Q ss_pred             CCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--
Q psy17326          3 ESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--   80 (264)
Q Consensus         3 Gs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--   80 (264)
                      |-..+++.+ .+..|.+|++++..++||.++. .++|.+++.+|...+.    ..  .+..+...  ....|.+|++.  
T Consensus         7 g~~~~~va~-~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~----~~--~~~~v~~~--g~~g~~gia~~pd   76 (353)
T 2g8s_A            7 TVNVEVLQD-KLDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAP----LS--GVPDVWAH--GQGGLLDVVLAPD   76 (353)
T ss_dssp             CSEEEEEEE-EESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCC----CB--SCCCCCCS--TTCSEEEEEECTT
T ss_pred             CcEEEEEEC-CCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeE----ec--CCcccccC--CCCCceeEEECCC
Confidence            334455544 8999999999986444999997 4889999877754322    00  00001111  13467899996  


Q ss_pred             ---CCEEEEEcCC
Q psy17326         81 ---EDTLYWTDRQ   90 (264)
Q Consensus        81 ---~d~lYwtD~~   90 (264)
                         +++||.++..
T Consensus        77 f~~~g~lYv~~~~   89 (353)
T 2g8s_A           77 FAQSRRIWLSYSE   89 (353)
T ss_dssp             HHHHCEEEEEEEE
T ss_pred             CCCCCEEEEEEeC
Confidence               6789998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.18  E-value=0.0052  Score=51.68  Aligned_cols=75  Identities=17%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQL   91 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~~   91 (264)
                      ....|.+|++|.. ++||+++...+.|.+.+.+|.....            .+..  ....|.+|++. ++.||+++...
T Consensus       144 ~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~~------------~~~~--~~~~~~~i~~d~~g~l~v~~~~~  208 (300)
T 2qc5_A          144 KGSYPAFITLGSD-NALWFTENQNNSIGRITNTGKLEEY------------PLPT--NAAAPVGITSGNDGALWFVEIMG  208 (300)
T ss_dssp             TTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEE------------ECSS--TTCCEEEEEECTTSSEEEEETTT
T ss_pred             CCCCceeEEECCC-CCEEEEecCCCeEEEECCCCcEEEe------------eCCC--CCCCcceEEECCCCCEEEEccCC
Confidence            4678999999975 5599999988999999997765443            2222  35689999985 56899999988


Q ss_pred             CeEEEEEccCCc
Q psy17326         92 NRVLSAHKFRGK  103 (264)
Q Consensus        92 ~~i~~~~k~~g~  103 (264)
                      +.|.+++. +|.
T Consensus       209 ~~i~~~~~-~g~  219 (300)
T 2qc5_A          209 NKIGRITT-TGE  219 (300)
T ss_dssp             TEEEEECT-TCC
T ss_pred             CEEEEEcC-CCc
Confidence            88888876 444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.12  E-value=0.0048  Score=53.49  Aligned_cols=74  Identities=15%  Similarity=0.080  Sum_probs=56.6

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCCCC-
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQLN-   92 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~~~-   92 (264)
                      .+|.|+++|. +++|||+|...++|.+.+.+|....             ++..   -.+|.+|++. .+.||.+|+... 
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~~-------------~~~~---~~~p~gia~~~dG~l~vad~~~~~   94 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQI-------------HATV---EGKVSGLAFTSNGDLVATGWNADS   94 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEE-------------EEEC---SSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceEE-------------EEeC---CCCceeEEEcCCCcEEEEeccCCc
Confidence            7899999998 5779999999999999999986433             2332   2579999985 467999997643 


Q ss_pred             -eEEEEEccCCcee
Q psy17326         93 -RVLSAHKFRGKNQ  105 (264)
Q Consensus        93 -~i~~~~k~~g~~~  105 (264)
                       .|++++..+|+-.
T Consensus        95 ~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           95 IPVVSLVKSDGTVE  108 (306)
T ss_dssp             CEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCeEE
Confidence             4887775566543

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=97.08  E-value=0.00021  Score=62.28  Aligned_cols=38  Identities=37%  Similarity=1.002  Sum_probs=31.3

Q ss_pred             ccccc---cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        130 RNDCV---NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       130 ~npC~---~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      .|+|.   +++|+|+|...+   ++|+|.|+.||.|.. .++|.+
T Consensus         2 ~~eC~~~~~~~C~~~C~~~~---~~~~C~C~~G~~l~~d~~sC~p   43 (283)
T 3f1s_B            2 KNECHPERTDGCQHFCLPGQ---ESYTCSCAQGYRLGEDHKQCVP   43 (283)
T ss_dssp             -CCCCSSCSSSCSSBCCCCT---TSCCCBCCTTEEECTTSSCEEE
T ss_pred             CCccCCCCCCCCCCEeeCCC---CCeEecCCCCcccCCCCCcccc
Confidence            47896   469999999875   579999999999988 457876

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.04  E-value=0.0099  Score=50.18  Aligned_cols=79  Identities=16%  Similarity=0.363  Sum_probs=59.4

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQL   91 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~~   91 (264)
                      .+..|++|++|.. ++||.++...+.|...+.+|.....             +.....+..|.+|++. .+.||.+++..
T Consensus       162 ~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~-------------~~~~g~~~~p~~i~~d~~G~l~v~~~~~  227 (286)
T 1q7f_A          162 HLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEGQYLRQ-------------IGGEGITNYPIGVGINSNGEILIADNHN  227 (286)
T ss_dssp             TCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTCCEEEE-------------ESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             ccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCCCEEEE-------------EccCCccCCCcEEEECCCCCEEEEeCCC
Confidence            5678999999984 6799999989999999998875554             3222135689999994 56899999887


Q ss_pred             C-eEEEEEccCCceeE
Q psy17326         92 N-RVLSAHKFRGKNQT  106 (264)
Q Consensus        92 ~-~i~~~~k~~g~~~~  106 (264)
                      + .|...+. +|+...
T Consensus       228 ~~~i~~~~~-~g~~~~  242 (286)
T 1q7f_A          228 NFNLTIFTQ-DGQLIS  242 (286)
T ss_dssp             SCEEEEECT-TSCEEE
T ss_pred             CEEEEEECC-CCCEEE
Confidence            5 7877764 454433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.96  E-value=0.0067  Score=52.72  Aligned_cols=73  Identities=12%  Similarity=0.109  Sum_probs=54.3

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCC-----------------CeEEEEecCCCceeEeEEEeecccceeEEeCCccccccee
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKL-----------------DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHS   76 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~-----------------~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~   76 (264)
                      +..|++|++|...++||++|...                 +.|.+.+.++...+.            +..   .+..|.+
T Consensus       125 ~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~------------~~~---~~~~p~g  189 (322)
T 2fp8_A          125 FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL------------LLK---ELHVPGG  189 (322)
T ss_dssp             CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE------------EEE---EESCCCE
T ss_pred             ccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE------------ecc---CCccCcc
Confidence            46799999998567999999752                 457777766544443            333   3678999


Q ss_pred             eeeeC--CEEEEEcCCCCeEEEEEccC
Q psy17326         77 LTIFE--DTLYWTDRQLNRVLSAHKFR  101 (264)
Q Consensus        77 l~v~~--d~lYwtD~~~~~i~~~~k~~  101 (264)
                      |++..  ++||++|...++|.+.+..+
T Consensus       190 ia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          190 AEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            99964  48999999888998888643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.92  E-value=0.16  Score=45.58  Aligned_cols=79  Identities=10%  Similarity=0.017  Sum_probs=54.0

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC----cccccceeeeee---
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS----HYLLHPHSLTIF---   80 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~----~~l~~P~~l~v~---   80 (264)
                      .+|.+++..|.+|++++. ++||.++...++|.+++.++.....            +..-.    ....-|++|++.   
T Consensus        25 ~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~------------v~~~~~v~~~g~~GllGia~~Pdf   91 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTE------------LGEVPGVSPSGEGGLLGIALSPDY   91 (347)
T ss_dssp             EEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEE------------EEECTTCCCBTTBSEEEEEECTTH
T ss_pred             EEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEee------------ecccCceeecCCCCceeeEecccc
Confidence            355668999999999984 6799999878999999876444332            21100    124578999995   


Q ss_pred             --CCEEEEE--cCCCCeEEEEEc
Q psy17326         81 --EDTLYWT--DRQLNRVLSAHK   99 (264)
Q Consensus        81 --~d~lYwt--D~~~~~i~~~~k   99 (264)
                        +++||.+  .....+|.|...
T Consensus        92 ~~~g~lYv~yt~~~~~~v~R~~~  114 (347)
T 3das_A           92 ASDHMVYAYFTSASDNRIVRMLY  114 (347)
T ss_dssp             HHHCEEEEEEECSSSEEEEEEEB
T ss_pred             ccCCEEEEEEecCCCCEEEEEEe
Confidence              4667764  344556777654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.92  E-value=0.014  Score=49.01  Aligned_cols=76  Identities=18%  Similarity=0.155  Sum_probs=57.4

Q ss_pred             CCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCC
Q psy17326         12 TKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQ   90 (264)
Q Consensus        12 ~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~   90 (264)
                      .....|.+|++|.. ++||+++...+.|.+.+.+|.-...            .+..  ....|.+|++. ++.||.+++.
T Consensus       180 ~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~------------~~~~--~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          180 TPASGPVGITKGND-DALWFVEIIGNKIGRITTSGEITEF------------KIPT--PNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             STTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEE------------ECSS--TTCCEEEEEECSTTCEEEEETT
T ss_pred             CCCCcceeEEECCC-CCEEEEccCCceEEEECCCCcEEEE------------ECCC--CCCCceeEEECCCCCEEEeccC
Confidence            35678999999975 6799999888899999996653322            1221  34689999985 4589999988


Q ss_pred             CCeEEEEEccCCc
Q psy17326         91 LNRVLSAHKFRGK  103 (264)
Q Consensus        91 ~~~i~~~~k~~g~  103 (264)
                      .+.|.+.+. +|.
T Consensus       245 ~~~i~~~d~-~g~  256 (299)
T 2z2n_A          245 ANKIGRLTS-NNI  256 (299)
T ss_dssp             TTEEEEEET-TTE
T ss_pred             CceEEEECC-CCc
Confidence            888998887 453

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.91  E-value=0.012  Score=49.46  Aligned_cols=75  Identities=19%  Similarity=0.231  Sum_probs=57.0

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQL   91 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~~   91 (264)
                      ....|++|++|.. ++||+++...+.|.+.+.+|.-.+.            .+..  ....|.+|++. .+.||+++...
T Consensus       139 ~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~------------~~~~--~~~~~~~i~~~~~g~l~v~~~~~  203 (299)
T 2z2n_A          139 KGSYPSFITLGSD-NALWFTENQNNAIGRITESGDITEF------------KIPT--PASGPVGITKGNDDALWFVEIIG  203 (299)
T ss_dssp             TTCCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEE------------ECSS--TTCCEEEEEECTTSSEEEEETTT
T ss_pred             CCCCCceEEEcCC-CCEEEEeCCCCEEEEEcCCCcEEEe------------eCCC--CCCcceeEEECCCCCEEEEccCC
Confidence            4568999999974 6899999888899999986554332            2222  35679999985 46899999888


Q ss_pred             CeEEEEEccCCc
Q psy17326         92 NRVLSAHKFRGK  103 (264)
Q Consensus        92 ~~i~~~~k~~g~  103 (264)
                      +.|.+++. +|.
T Consensus       204 ~~i~~~~~-~g~  214 (299)
T 2z2n_A          204 NKIGRITT-SGE  214 (299)
T ss_dssp             TEEEEECT-TCC
T ss_pred             ceEEEECC-CCc
Confidence            88988887 654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.90  E-value=0.01  Score=51.98  Aligned_cols=82  Identities=13%  Similarity=0.120  Sum_probs=58.7

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC---C-C--ceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEE
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD---G-T--SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLY   85 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld---G-~--~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lY   85 (264)
                      .+..|++|+++...+.|||+|...+.|.+.+++   | .  +++.            +..-......|.++++. ++.||
T Consensus       177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~------------~~~~~~~~~~p~gi~~d~~G~lw  244 (326)
T 2ghs_A          177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV------------FIDSTGIKGGMDGSVCDAEGHIW  244 (326)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE------------EEECTTSSSEEEEEEECTTSCEE
T ss_pred             CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE------------EEECCCCCCCCCeeEECCCCCEE
Confidence            456899999999888999999988999999986   4 2  2333            22211123568899984 56788


Q ss_pred             EEcCCCCeEEEEEccCCceeEE
Q psy17326         86 WTDRQLNRVLSAHKFRGKNQTV  107 (264)
Q Consensus        86 wtD~~~~~i~~~~k~~g~~~~~  107 (264)
                      .+.+..+.|.+++. +|+....
T Consensus       245 va~~~~~~v~~~d~-~g~~~~~  265 (326)
T 2ghs_A          245 NARWGEGAVDRYDT-DGNHIAR  265 (326)
T ss_dssp             EEEETTTEEEEECT-TCCEEEE
T ss_pred             EEEeCCCEEEEECC-CCCEEEE
Confidence            88887778888887 5554433

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.76  E-value=0.00061  Score=50.90  Aligned_cols=39  Identities=31%  Similarity=0.840  Sum_probs=31.7

Q ss_pred             ccccccc--CCcccceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        129 TRNDCVN--APCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       129 ~~npC~~--~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      ..|+|..  ++|++.|+..+   ++|+|.|+.||++..+.+|++
T Consensus        28 d~neC~~~~~~C~~~C~n~~---g~y~C~C~~Gy~g~~g~~C~d   68 (107)
T 2w2n_E           28 GTNECLDNNGGCSYVCNDLK---IGYECLCPDGFQLVAQRRCED   68 (107)
T ss_dssp             SCCGGGTGGGGCSSEEECCS---BSCEEECCTTCEEETTTEEEC
T ss_pred             cCccCcCCCCCCCCEeEeCC---CCeEEECCCCccccCCCcccc
Confidence            4689984  58999999875   589999999999865566864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.67  E-value=0.22  Score=42.51  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=57.5

Q ss_pred             CCccEEEEeCCCCeEEEEeCC------CCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEE
Q psy17326         15 YWPNGLTLDIATRRVYFAESK------LDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYW   86 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~------~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYw   86 (264)
                      ..|.++++++..++||.++..      .+.|...+.+......            .+..   -..|.++++.  ++++|.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~------------~~~~---~~~~~~~~~s~dg~~l~v  105 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ------------AIHN---DLKPFGATINNTTQTLWF  105 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE------------EEEE---SSCCCSEEEETTTTEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE------------EEec---CCCcceEEECCCCCEEEE
Confidence            468999999999999999976      4578888887554333            2332   2357888874  468999


Q ss_pred             EcCCCCeEEEEEccCCceeEEE
Q psy17326         87 TDRQLNRVLSAHKFRGKNQTVV  108 (264)
Q Consensus        87 tD~~~~~i~~~~k~~g~~~~~i  108 (264)
                      ++...+.|...+..+|+....+
T Consensus       106 ~~~~~~~v~~~d~~~~~~~~~~  127 (353)
T 3vgz_A          106 GNTVNSAVTAIDAKTGEVKGRL  127 (353)
T ss_dssp             EETTTTEEEEEETTTCCEEEEE
T ss_pred             EecCCCEEEEEeCCCCeeEEEE
Confidence            9998888888887666654433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.62  E-value=0.013  Score=50.84  Aligned_cols=62  Identities=13%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCC---ceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEc
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGT---SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTD   88 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~---~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD   88 (264)
                      .+..|+||+++...+.||++|...++|.+.+++|.   .++.             +...  .. |.+|++. ++.||-++
T Consensus       183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~-------------~~~~--~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV-------------LVKI--PN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE-------------EEEC--SS-EEEEEECTTSCEEEEE
T ss_pred             CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce-------------EEeC--CC-CCCeEECCCCCEEEEe
Confidence            56789999999988899999999999999999974   2332             3221  13 9999984 45788888


Q ss_pred             CC
Q psy17326         89 RQ   90 (264)
Q Consensus        89 ~~   90 (264)
                      +.
T Consensus       247 ~~  248 (322)
T 2fp8_A          247 SE  248 (322)
T ss_dssp             EE
T ss_pred             cC
Confidence            76

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.62  E-value=0.00083  Score=53.98  Aligned_cols=38  Identities=29%  Similarity=0.764  Sum_probs=30.6

Q ss_pred             ccccccC--C---cccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        130 RNDCVNA--P---CQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       130 ~npC~~~--~---CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      .++|...  +   |+|.|...+   ++++|.|+.||.|.. +++|.+
T Consensus       124 i~eC~~~~~~~~~C~~~C~n~~---g~~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          124 IDECQVAPGEAPTCDHHCHNHL---GGFYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEET---TEEEEECCTTEEECTTSSCEEE
T ss_pred             cCcccCCCCCCCccCCccccCC---CCEEEeCCCCcEECCCCCcccc
Confidence            4678743  2   999999875   579999999999988 468975

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.61  E-value=0.017  Score=50.85  Aligned_cols=83  Identities=10%  Similarity=0.060  Sum_probs=60.1

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCC-----CCeEEEEecCCCc-eeEeEEEeecccceeE-EeCC--cccccceeeeee--C
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESK-----LDFIDFCNYDGTS-RQQDTLYWTDRQLNRV-VAGS--HYLLHPHSLTIF--E   81 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~-----~~~Ie~~~ldG~~-r~~~~lfwtd~~~~~v-l~~~--~~l~~P~~l~v~--~   81 (264)
                      .+..|.||++|.. ++|||+|..     ..+|.+.+++... .++            + +...  ....+|.+|++.  +
T Consensus        65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~------------~~~~~~~~~~~~~~~~v~vd~~~  131 (343)
T 2qe8_A           65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRV------------IYLPPPITLSNSFVNDLAVDLIH  131 (343)
T ss_dssp             CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEE------------EECCTTTSCTTCCCCEEEEETTT
T ss_pred             ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEE------------EECChhhcccccccceEEEecCC
Confidence            5779999999986 789999987     5789999987433 332            2 1111  012467889986  5


Q ss_pred             CEEEEEcC---CCCeEEEEEccCCceeEEE
Q psy17326         82 DTLYWTDR---QLNRVLSAHKFRGKNQTVV  108 (264)
Q Consensus        82 d~lYwtD~---~~~~i~~~~k~~g~~~~~i  108 (264)
                      +++|.+|.   ....|..++..+|+..+++
T Consensus       132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~  161 (343)
T 2qe8_A          132 NFVYISDPAPDDKAALIRVDLQTGLAARVL  161 (343)
T ss_dssp             TEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred             CEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence            79999998   6778988887777655554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.59  E-value=0.0092  Score=51.66  Aligned_cols=72  Identities=15%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCC----ceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEE
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGT----SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWT   87 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~----~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwt   87 (264)
                      .+..|+||+  +..++||++|...++|.+.++++.    .++             ++..   ...|-+|++. ++.||-+
T Consensus       167 ~~~~pngis--~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~-------------~~~~---~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          167 VFPAANGLK--RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE-------------IFVE---QTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             CSCSEEEEE--EETTEEEEEETTTTEEEEEEBCTTSCBCCCE-------------EEEE---SCCCSSEEEBTTCCEEEE
T ss_pred             CCCcCCCcC--cCCCEEEEEeCCCCEEEEEEeCCCCCCCccE-------------EEec---cCCCCCeEECCCCCEEEE
Confidence            566899994  447899999999999999999862    222             2322   3579999995 5689999


Q ss_pred             cCCCCeEEEEEccCCc
Q psy17326         88 DRQLNRVLSAHKFRGK  103 (264)
Q Consensus        88 D~~~~~i~~~~k~~g~  103 (264)
                      ++..++|.+++. .|+
T Consensus       229 ~~~~~~V~~~~~-~G~  243 (306)
T 2p4o_A          229 THIYNSVVRIAP-DRS  243 (306)
T ss_dssp             CBTTCCEEEECT-TCC
T ss_pred             eCCCCeEEEECC-CCC
Confidence            999888988876 354

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.52  E-value=0.3  Score=45.16  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             CcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC-CCceeEeEEEeecccceeEEeCCc------ccccceee
Q psy17326          5 SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD-GTSRQQDTLYWTDRQLNRVVAGSH------YLLHPHSL   77 (264)
Q Consensus         5 ~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld-G~~r~~~~lfwtd~~~~~vl~~~~------~l~~P~~l   77 (264)
                      ..+++ -+++..|.+|++++. ++||-++...++|.+++.+ |... .            +..-..      ...-+++|
T Consensus        18 ~~~~~-a~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~-~------------~~~~~~~~~~~~g~~Gllgi   82 (454)
T 1cru_A           18 DKKVI-LSNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVK-T------------VFQVPEIVNDADGQNGLLGF   82 (454)
T ss_dssp             CEEEE-ECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEE-E------------EEECTTCCCCTTSSCSEEEE
T ss_pred             EEEEE-ECCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEe-E------------EecCCccccccCCCCceeEE
Confidence            34444 458999999999985 6899999877789998875 4432 2            221100      12457899


Q ss_pred             eee-----CCEEEEEcCC
Q psy17326         78 TIF-----EDTLYWTDRQ   90 (264)
Q Consensus        78 ~v~-----~d~lYwtD~~   90 (264)
                      ++.     +++||.++..
T Consensus        83 a~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           83 AFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             EECTTTTTSCEEEEEEEE
T ss_pred             EECCCcCcCCEEEEEEec
Confidence            997     7899999853

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.49  E-value=0.07  Score=46.07  Aligned_cols=82  Identities=11%  Similarity=0.024  Sum_probs=60.1

Q ss_pred             CCccEEEEeCCCCeEEEEeCC--CCeEEEEecCCCce-eEeEEEeecccceeEEeCCcccccceeeeeeCCEEEEEcCCC
Q psy17326         15 YWPNGLTLDIATRRVYFAESK--LDFIDFCNYDGTSR-QQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQL   91 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~--~~~Ie~~~ldG~~r-~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lYwtD~~~   91 (264)
                      .+|.||+++.. ++||-+...  .+.|..+++..... +.            +-..  ....+.|+++.+++||.+.|..
T Consensus        21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~------------i~l~--~~~fgeGi~~~g~~lyv~t~~~   85 (266)
T 2iwa_A           21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENI------------HKMD--DSYFGEGLTLLNEKLYQVVWLK   85 (266)
T ss_dssp             CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEE------------EECC--TTCCEEEEEEETTEEEEEETTC
T ss_pred             CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEE------------EecC--CCcceEEEEEeCCEEEEEEecC
Confidence            46899999975 799998753  67999999974432 22            2222  1245567889999999999999


Q ss_pred             CeEEEEEccCCceeEEEecc
Q psy17326         92 NRVLSAHKFRGKNQTVVSHL  111 (264)
Q Consensus        92 ~~i~~~~k~~g~~~~~i~~~  111 (264)
                      +.+..++..+++....+..+
T Consensus        86 ~~v~viD~~t~~v~~~i~~g  105 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQ  105 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEECCCCcEEEEEECC
Confidence            99999998777666555433

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=96.47  E-value=0.0017  Score=48.79  Aligned_cols=38  Identities=24%  Similarity=0.609  Sum_probs=30.9

Q ss_pred             cccc--cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCC
Q psy17326        131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       131 npC~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      ++|.  +++|+|.|+..+   ++|+|.|+.||++.. +++|.+.
T Consensus        55 ~~C~~~~~~C~~~C~n~~---g~y~C~C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           55 LNCSLDNGGCTHYCLEEV---GWRRCSCAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             SSSSSGGGGCSSEEEECS---SSEEEECCTTEEECTTSSCEEEC
T ss_pred             CcCcCCCCCCCCEeECCC---CCEEeECCCCeeECCCCCccCcC
Confidence            5786  458999999875   689999999999987 4678753

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=96.47  E-value=0.0016  Score=50.89  Aligned_cols=38  Identities=21%  Similarity=0.489  Sum_probs=30.8

Q ss_pred             cccccCCcccceecCCCCCC-CeeeecCCCeEEcC-CCCCCCC
Q psy17326        131 NDCVNAPCQQLCLLSPSSST-GYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       131 npC~~~~CshlCl~~p~~~~-~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      .+|.+++|+|.|+..+   + +|+|.|+.||.|.. +++|.+.
T Consensus        91 c~~~~~~C~~~C~~~~---g~~y~C~C~~Gy~l~~dG~~C~~~  130 (142)
T 2c4f_L           91 CVNENGGCEQYCSDHT---GTKRSCRCHEGYSLLADGVSCTPT  130 (142)
T ss_dssp             TTTGGGGCSSEEECCT---TSCCEEECCTTEEECTTSSCEEES
T ss_pred             ccCCCCCccCEeECCC---CCCEEEECCCCceECCCCCCCCCC
Confidence            4556789999999875   4 89999999999988 4578653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.24  E-value=0.03  Score=47.51  Aligned_cols=82  Identities=10%  Similarity=0.066  Sum_probs=55.4

Q ss_pred             CCCCccEEEEe----CCCCeEEEEeCCCCeEEEEecCCCceeE-eEEEeecccceeEEeCCccc-ccceeeeee-CCEEE
Q psy17326         13 KIYWPNGLTLD----IATRRVYFAESKLDFIDFCNYDGTSRQQ-DTLYWTDRQLNRVVAGSHYL-LHPHSLTIF-EDTLY   85 (264)
Q Consensus        13 ~l~~P~gLaiD----~~~~rLYW~D~~~~~Ie~~~ldG~~r~~-~~lfwtd~~~~~vl~~~~~l-~~P~~l~v~-~d~lY   85 (264)
                      .+..|++++++    ...+.||+++...+.|.+.++++..... ..+         +..-.... ..|.+|++. .+.||
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~---------~~~~~~~~~~~p~~i~~d~~G~l~  240 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV---------WGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE---------EEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE---------EEECCCCCCCCCCceEECCCCCEE
Confidence            45679999999    8777899999988999999876322110 000         11111111 568899885 46899


Q ss_pred             EEcCCCCeEEEEEccCCc
Q psy17326         86 WTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        86 wtD~~~~~i~~~~k~~g~  103 (264)
                      .+++..+.|.+.+..+|+
T Consensus       241 v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEEETTTEEEEECTTCBS
T ss_pred             EEEcCCCEEEEEcCCCCc
Confidence            888877788888765454

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.13  E-value=0.0028  Score=50.08  Aligned_cols=38  Identities=26%  Similarity=0.684  Sum_probs=30.8

Q ss_pred             cccccc---CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        130 RNDCVN---APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       130 ~npC~~---~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      .++|..   ..|+|.|...+   +++.|.|+.||.|.. +++|..
T Consensus       117 ~~eC~~~~~~~C~~~C~n~~---g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          117 INECTDFVDVPCSHFCNNFI---GGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             CCTTTC-CCCCSSSEEEEET---TEEEEECCTTCEECTTSSCEEC
T ss_pred             CcccCCCCCCCCCCcccCcC---CCEEEecCCCcEECCCCCcccc
Confidence            467874   47999999875   589999999999988 468964

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.07  E-value=0.025  Score=50.44  Aligned_cols=90  Identities=14%  Similarity=0.082  Sum_probs=54.8

Q ss_pred             EEeCCCCCccEEEEeCCCCeEEEEeCCCCe--------EEEEecCCCceeEeEEEeec--cc-ceeEEeCCcccccceee
Q psy17326          9 IISTKIYWPNGLTLDIATRRVYFAESKLDF--------IDFCNYDGTSRQQDTLYWTD--RQ-LNRVVAGSHYLLHPHSL   77 (264)
Q Consensus         9 iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~--------Ie~~~ldG~~r~~~~lfwtd--~~-~~~vl~~~~~l~~P~~l   77 (264)
                      ++..++..|.||++|+.+++||.+|...+.        |..+.- |.+.--...+...  .+ ...++.-. ....|.||
T Consensus       196 i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~  273 (352)
T 2ism_A          196 VYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNL  273 (352)
T ss_dssp             EEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEE
T ss_pred             EEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcce
Confidence            345578889999999988999999988766        444432 3321000000000  00 00011110 12468999


Q ss_pred             eeeCCEEEEEcCCCCeEEEEEcc
Q psy17326         78 TIFEDTLYWTDRQLNRVLSAHKF  100 (264)
Q Consensus        78 ~v~~d~lYwtD~~~~~i~~~~k~  100 (264)
                      +++++.+|.+++..+.|.++...
T Consensus       274 ~~~~G~l~v~~~~~~~v~~v~~~  296 (352)
T 2ism_A          274 AFFRGDLYVAGLRGQALLRLVLE  296 (352)
T ss_dssp             EEETTEEEEEETTTTEEEEEEEE
T ss_pred             EEECCEEEEEECCCCEEEEEEEC
Confidence            99999999999999999988754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.02  E-value=0.037  Score=49.44  Aligned_cols=96  Identities=21%  Similarity=0.246  Sum_probs=67.7

Q ss_pred             CCCCccEEEEeCC---CCeEEEEeCC---C----CeEEEEecCCCc-----eeEeEEEeecccceeEEeC--Ccccccce
Q psy17326         13 KIYWPNGLTLDIA---TRRVYFAESK---L----DFIDFCNYDGTS-----RQQDTLYWTDRQLNRVVAG--SHYLLHPH   75 (264)
Q Consensus        13 ~l~~P~gLaiD~~---~~rLYW~D~~---~----~~Ie~~~ldG~~-----r~~~~lfwtd~~~~~vl~~--~~~l~~P~   75 (264)
                      ....|.||++|+.   +++||.++..   .    .+|.+.++++..     +++            ++..  ....+.|.
T Consensus        71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~------------l~~~~~~~~~h~~~  138 (354)
T 3a9g_A           71 GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKT------------LIDGIPGAYIHNGG  138 (354)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEE------------EEEEEECCSSCCCC
T ss_pred             CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEE------------EEEcCCCCCCcCCc
Confidence            4567999999997   8999999874   2    689999998762     333            3331  11234677


Q ss_pred             eeee-eCCEEEEEcCC-------------CCeEEEEEccCCc--------eeEEEeccCCCceeEEEe
Q psy17326         76 SLTI-FEDTLYWTDRQ-------------LNRVLSAHKFRGK--------NQTVVSHLISQPLSIHVH  121 (264)
Q Consensus        76 ~l~v-~~d~lYwtD~~-------------~~~i~~~~k~~g~--------~~~~i~~~~~~p~~i~v~  121 (264)
                      +|++ -.++||+++..             ..+|.|++.. |+        ..+++..++..|.+|.+.
T Consensus       139 ~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~~~~i~a~G~rnp~Gla~d  205 (354)
T 3a9g_A          139 RIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFPNSPIWSYGHRNPQGIDWH  205 (354)
T ss_dssp             CEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSSTTCCEEEECCSCCCEEEEC
T ss_pred             eEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCCCCcEEEEccCCcceEEEe
Confidence            8888 45699999642             2479999864 44        345667788889999865

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=95.99  E-value=0.11  Score=43.91  Aligned_cols=72  Identities=10%  Similarity=-0.010  Sum_probs=53.0

Q ss_pred             EeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC--CCc---eeEeEEEeecccceeEEeCCcccccceeeeee-CCE
Q psy17326         10 ISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD--GTS---RQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDT   83 (264)
Q Consensus        10 v~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld--G~~---r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~   83 (264)
                      +...+..|+||++++..+.| |++...+.|.+.+++  |+-   ++             ++ .. ....|.+|++. ++.
T Consensus       167 ~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~-------------~~-~~-~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          167 PIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGV-------------HF-TV-EPGKTDGLRVDAGGL  230 (296)
T ss_dssp             EECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEE-------------EE-CC-SSSCCCSEEEBTTSC
T ss_pred             eecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCe-------------Ee-eC-CCCCCCeEEECCCCC
Confidence            34578899999999988888 999999999999986  332   22             33 21 34678899984 557


Q ss_pred             EEEEcCCCCeEEEEEc
Q psy17326         84 LYWTDRQLNRVLSAHK   99 (264)
Q Consensus        84 lYwtD~~~~~i~~~~k   99 (264)
                      ||-++  .++|.+.+.
T Consensus       231 l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          231 IWASA--GDGVHVLTP  244 (296)
T ss_dssp             EEEEE--TTEEEEECT
T ss_pred             EEEEc--CCeEEEECC
Confidence            77777  456777765

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=95.98  E-value=0.0012  Score=49.34  Aligned_cols=38  Identities=32%  Similarity=0.878  Sum_probs=0.4

Q ss_pred             ccccccc-CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCC
Q psy17326        129 TRNDCVN-APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCV  169 (264)
Q Consensus       129 ~~npC~~-~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~  169 (264)
                      ..++|.. +.|++.|+..+   ++|+|.|+.||.+.. +++|.
T Consensus        68 dideC~~~~~C~~~C~n~~---gsy~C~C~~Gy~~~~d~~~C~  107 (107)
T 2w2n_E           68 DIDECQDPDTCSQLCVNLE---GGYKCQCEEGFQLDPHTKACK  107 (107)
T ss_dssp             C------------------------------------------
T ss_pred             cccccCCCCCcCCeeecCC---CCEEEECCCCceECCCCCccC
Confidence            3577874 68999999875   689999999999987 45773

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.80  E-value=0.13  Score=44.79  Aligned_cols=87  Identities=7%  Similarity=0.033  Sum_probs=64.8

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce-eEeEEEeecccceeEEeCCcccccceeeee-eCCEEEEEcCCCCe
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR-QQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTLYWTDRQLNR   93 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r-~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~lYwtD~~~~~   93 (264)
                      .|.+|++|  .++||.+....+.|..++...... ++             +..   ...|.+|++ .++++|.++...+.
T Consensus        45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~-------------i~~---~~~p~~i~~~~~g~lyv~~~~~~~  106 (328)
T 3dsm_A           45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGR-------------ITG---FTSPRYIHFLSDEKAYVTQIWDYR  106 (328)
T ss_dssp             CEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEE-------------EEC---CSSEEEEEEEETTEEEEEEBSCSE
T ss_pred             cceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEE-------------cCC---CCCCcEEEEeCCCeEEEEECCCCe
Confidence            48899997  699999999889999999874333 33             332   478999999 78899999966788


Q ss_pred             EEEEEccCCceeEEEeccC-----CCceeEEE
Q psy17326         94 VLSAHKFRGKNQTVVSHLI-----SQPLSIHV  120 (264)
Q Consensus        94 i~~~~k~~g~~~~~i~~~~-----~~p~~i~v  120 (264)
                      |..++..+++-...+..+.     ..|.+|.+
T Consensus       107 v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~  138 (328)
T 3dsm_A          107 IFIINPKTYEITGYIECPDMDMESGSTEQMVQ  138 (328)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTCBCCCEEE
T ss_pred             EEEEECCCCeEEEEEEcCCccccCCCcceEEE
Confidence            9999987776554443222     26777766

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.75  E-value=0.21  Score=42.69  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=65.3

Q ss_pred             eCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcC
Q psy17326         11 STKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDR   89 (264)
Q Consensus        11 ~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~   89 (264)
                      .....+|.++++|. .++|||++...+.|.+.+.++...+.            +...  ....|.+|++. ++.+|.++.
T Consensus        41 ~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~------------~~~~--~~~~~~~i~~~~dg~l~v~~~  105 (333)
T 2dg1_A           41 SKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKR------------PFVS--HKANPAAIKIHKDGRLFVCYL  105 (333)
T ss_dssp             ESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEE------------EEEC--SSSSEEEEEECTTSCEEEEEC
T ss_pred             eccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEE------------EeeC--CCCCcceEEECCCCcEEEEeC
Confidence            34677899999996 56799999988999999998766554            4322  13578899984 568888887


Q ss_pred             CC----CeEEEEEccCCceeEEEec--cCCCceeEEE
Q psy17326         90 QL----NRVLSAHKFRGKNQTVVSH--LISQPLSIHV  120 (264)
Q Consensus        90 ~~----~~i~~~~k~~g~~~~~i~~--~~~~p~~i~v  120 (264)
                      ..    ..|.+++..++....++..  ....|.+|.+
T Consensus       106 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~  142 (333)
T 2dg1_A          106 GDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF  142 (333)
T ss_dssp             TTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred             CCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence            65    5788888765554434331  1234555554

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=95.56  E-value=0.011  Score=38.69  Aligned_cols=36  Identities=33%  Similarity=0.775  Sum_probs=22.8

Q ss_pred             cccccccCCcccceecCC--CCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSP--SSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p--~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      .++||.|++   .|...+  ...++|+|.||.||.   +..|+.
T Consensus        12 ~s~pC~NgG---tC~~~~~~d~~~~y~C~C~~g~~---G~~CE~   49 (55)
T 3u7u_G           12 EKTFCVNGG---ECFMVKDLSNPSRYLCKCPNEFT---GDRCQN   49 (55)
T ss_dssp             TTTTSCTTC---EEEEECCC--CCCEEEEECTTEE---STTSCE
T ss_pred             cCCCCCCCC---CcCCCCccCCCCCEeEeCCCCCc---CCCcCc
Confidence            356676653   564321  123689999999997   567863

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.55  E-value=0.21  Score=44.29  Aligned_cols=78  Identities=14%  Similarity=0.062  Sum_probs=56.1

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC---cccccceeeeeeCC--
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS---HYLLHPHSLTIFED--   82 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~---~~l~~P~~l~v~~d--   82 (264)
                      .++-+.+..|.+|++++. ++||.+|.. ++|.+++ +|.. ..            +..-.   .....|.+|++..+  
T Consensus        24 ~~va~~l~~P~~ia~~pd-G~l~V~e~~-g~I~~i~-~g~~-~~------------~~~~~v~~~g~~~p~gia~~pdf~   87 (352)
T 2ism_A           24 EEVVGGLEVPWALAFLPD-GGMLIAERP-GRIRLFR-EGRL-ST------------YAELSVYHRGESGLLGLALHPRFP   87 (352)
T ss_dssp             EEEECCCSCEEEEEECTT-SCEEEEETT-TEEEEEE-TTEE-EE------------EEECCCCCSTTCSEEEEEECTTTT
T ss_pred             EEEECCCCCceEEEEcCC-CeEEEEeCC-CeEEEEE-CCCc-cE------------eecceEeecCCCCceeEEECCCCC
Confidence            344558999999999985 569999976 8999999 7753 22            22110   12468999999765  


Q ss_pred             ---EEEEEcCCC-----CeEEEEEccC
Q psy17326         83 ---TLYWTDRQL-----NRVLSAHKFR  101 (264)
Q Consensus        83 ---~lYwtD~~~-----~~i~~~~k~~  101 (264)
                         +||.++...     .+|.++...+
T Consensus        88 ~~g~lYv~~~~~~~~~~~~v~r~~~~~  114 (352)
T 2ism_A           88 QEPYVYAYRTVAEGGLRNQVVRLRHLG  114 (352)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEEECS
T ss_pred             CCCEEEEEEecCCCCCccEEEEEEeCC
Confidence               999998753     5688877543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.52  E-value=0.97  Score=38.32  Aligned_cols=79  Identities=14%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcc-------cccceeeee--eCCEEE
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHY-------LLHPHSLTI--FEDTLY   85 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~-------l~~P~~l~v--~~d~lY   85 (264)
                      ..|.++++++..++||.++...+.|...+........            .+.....       ..+|.++++  -++++|
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  156 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKG------------RLVLDDRKRTEEVRPLQPRELVADDATNTVY  156 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEE------------EEESCCCCCCSSCCCCEEEEEEEETTTTEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEE------------EEecCCCccccccCCCCCceEEECCCCCEEE
Confidence            4699999999999999999988999999987554332            2322100       124788888  467899


Q ss_pred             EEcCC-CCeEEEEEccCCcee
Q psy17326         86 WTDRQ-LNRVLSAHKFRGKNQ  105 (264)
Q Consensus        86 wtD~~-~~~i~~~~k~~g~~~  105 (264)
                      .+++. .+.|...+..+++..
T Consensus       157 ~~~~~~~~~i~~~d~~~~~~~  177 (353)
T 3vgz_A          157 ISGIGKESVIWVVDGGNIKLK  177 (353)
T ss_dssp             EEEESSSCEEEEEETTTTEEE
T ss_pred             EEecCCCceEEEEcCCCCceE
Confidence            99854 456777776555433

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.50  E-value=0.0043  Score=44.06  Aligned_cols=37  Identities=22%  Similarity=0.736  Sum_probs=28.5

Q ss_pred             ccccccC--Ccc-cceecCCCCCCCeeeecCCCeEEcC-CCCCC
Q psy17326        130 RNDCVNA--PCQ-QLCLLSPSSSTGYTCKCIAGFRVTK-DGRCV  169 (264)
Q Consensus       130 ~npC~~~--~Cs-hlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~  169 (264)
                      .++|..+  .|. +.|+..+   ++|+|.|+.||++.+ +++|+
T Consensus        46 ideC~~~~~~C~~~~C~n~~---g~y~C~C~~G~~~~~~~~~Ci   86 (86)
T 1lmj_A           46 IDECQRDPLLCRGGVCHNTE---GSYRCECPPGHQLSPNISACI   86 (86)
T ss_dssp             CCHHHHCSSTTTTSEEEEET---TEEEEESCTTSCCCSSSCCCC
T ss_pred             cccccCCCCcCCCCEeEcCC---CCEEEECcCCcccCCCCCccC
Confidence            4677644  476 6999875   689999999999987 45774

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.44  E-value=0.094  Score=45.92  Aligned_cols=95  Identities=12%  Similarity=0.065  Sum_probs=61.5

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecC----CC--ceeEeEEEeecccceeEEeCCcccccceeeee-eCCEEEEEc
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYD----GT--SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTLYWTD   88 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld----G~--~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~lYwtD   88 (264)
                      .|+||++++..+.||+++....+|.+++.+    +.  +++..      ..+. .+.   ....|-||++ -++.||.++
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~-~~g---~~g~pdgia~d~~G~l~va~  265 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG------SKIE-RYS---EKPICDGISIDKDHNIYVGD  265 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH------TTCE-EEE---ECCSCSCEEECTTCCEEEEE
T ss_pred             ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh------cceE-ecc---cCCCCceEEECCCCCEEEEc
Confidence            489999999988999999988899988753    21  11100      0000 111   1247889998 467999999


Q ss_pred             CCCCeEEEEEccCCceeEEEec-cCCCceeEEE
Q psy17326         89 RQLNRVLSAHKFRGKNQTVVSH-LISQPLSIHV  120 (264)
Q Consensus        89 ~~~~~i~~~~k~~g~~~~~i~~-~~~~p~~i~v  120 (264)
                      +..++|.+.+..+|+-..++.. .+..|.++++
T Consensus       266 ~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          266 LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence            9999999998745643322221 1344555554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=95.35  E-value=0.23  Score=43.13  Aligned_cols=82  Identities=10%  Similarity=0.009  Sum_probs=59.6

Q ss_pred             cEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-eCCEE
Q psy17326          6 RSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTL   84 (264)
Q Consensus         6 r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~l   84 (264)
                      .+.+.+.....++|.+.|..+++|||+|...+.|.+.+.++...+.             +..   -..|.+|++ -++.+
T Consensus        40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-------------~~~---~~~v~~i~~~~dg~l  103 (326)
T 2ghs_A           40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-------------HAL---PFMGSALAKISDSKQ  103 (326)
T ss_dssp             CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-------------EEC---SSCEEEEEEEETTEE
T ss_pred             eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-------------EEC---CCcceEEEEeCCCeE
Confidence            4566666777899999999999999999999999999998865543             222   135777776 45666


Q ss_pred             EEEcCCCCeEEEEEccCCcee
Q psy17326         85 YWTDRQLNRVLSAHKFRGKNQ  105 (264)
Q Consensus        85 YwtD~~~~~i~~~~k~~g~~~  105 (264)
                      |.+.  ...|.+++..+|+..
T Consensus       104 ~v~~--~~gl~~~d~~~g~~~  122 (326)
T 2ghs_A          104 LIAS--DDGLFLRDTATGVLT  122 (326)
T ss_dssp             EEEE--TTEEEEEETTTCCEE
T ss_pred             EEEE--CCCEEEEECCCCcEE
Confidence            6665  346888887666543

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=95.29  E-value=0.013  Score=44.10  Aligned_cols=32  Identities=31%  Similarity=0.708  Sum_probs=27.5

Q ss_pred             ccccccCCcccceecC-CCCCCCeeeecCCCeEEcC
Q psy17326        130 RNDCVNAPCQQLCLLS-PSSSTGYTCKCIAGFRVTK  164 (264)
Q Consensus       130 ~npC~~~~CshlCl~~-p~~~~~~~C~Cp~G~~L~~  164 (264)
                      .++|..++|.|.|+.. +   ++|+|.|+.||++..
T Consensus         4 ideC~~~pC~~~C~~~~~---g~y~C~C~~Gy~g~~   36 (118)
T 1dx5_I            4 VDPCFRANCEYQCQPLDQ---TSYLCVCAEGFAPIP   36 (118)
T ss_dssp             CCGGGGCCCSSEEEECSS---SCEEEECCTTEEEET
T ss_pred             cccCCCCCCCCCCCCCCC---CCEEeECCCCccccC
Confidence            5789888999999987 4   589999999999864

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=95.27  E-value=0.0082  Score=47.16  Aligned_cols=39  Identities=23%  Similarity=0.663  Sum_probs=30.6

Q ss_pred             cccccc--CCcccce-ecCCCCCCCeeeecCCCeEEcC-CCCCCCC
Q psy17326        130 RNDCVN--APCQQLC-LLSPSSSTGYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       130 ~npC~~--~~CshlC-l~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      .++|..  ++|.+.| +..+   ++|+|.|+.||.|.. +++|.+.
T Consensus        85 ~deC~~~~~~C~~~C~~n~~---g~y~C~C~~Gy~l~~dG~~C~~~  127 (146)
T 1x7a_L           85 DATCNIKNGRCKQFCKTGAD---SKVLCSCTTGYRLAPDQKSCKPA  127 (146)
T ss_dssp             ECCTTSGGGSCSSBCCCCSS---SCCCCBCCTTEEECTTSSSEEEC
T ss_pred             CccccCCCCCCcCCCCCCCC---CCEEeEcCCCcEeCCCCCcCCCC
Confidence            377874  4899999 7664   589999999999987 4578754

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=95.22  E-value=0.011  Score=35.34  Aligned_cols=33  Identities=30%  Similarity=0.779  Sum_probs=21.5

Q ss_pred             cccccCCcc--cceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        131 NDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       131 npC~~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ++|..+.|.  ..|+..+   ++|+|.||.||.   +..|+
T Consensus         4 d~C~~~pC~ngg~C~~~~---~~~~C~C~~G~~---G~~Ce   38 (39)
T 1edm_B            4 DQCESNPCLNGGSCKDDI---NSYECWCPFGFE---GKNCE   38 (39)
T ss_dssp             CTTTTCCCCTTCEEEEET---TEEEEECCTTCC---STTSC
T ss_pred             ccCCCCCCCCCCEeEcCC---CceEeECCCCCc---CCccC
Confidence            344444444  2677654   589999999995   44564

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=95.21  E-value=0.012  Score=41.42  Aligned_cols=36  Identities=28%  Similarity=0.726  Sum_probs=24.2

Q ss_pred             cccc-cCCcc-cceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        131 NDCV-NAPCQ-QLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       131 npC~-~~~Cs-hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ++|. .+.|. +.|+..+   ++|+|.|+.||.+.++++|+
T Consensus        45 deC~~~~~C~~~~C~n~~---g~y~C~C~~G~~g~~~~~C~   82 (82)
T 1emn_A           45 DECSVGNPCGNGTCKNVI---GGFECTCEEGFEPGPMMTCE   82 (82)
T ss_dssp             CGGGTCCTTSSSCEEECS---SSEEECCSSSSCCCSSSCCC
T ss_pred             ccccCCCCCCCCEeECCC---CCEEeECCCCeEeCCCCccC
Confidence            4554 34554 4788765   57889998888876555563

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=95.18  E-value=0.0079  Score=49.73  Aligned_cols=38  Identities=21%  Similarity=0.670  Sum_probs=31.1

Q ss_pred             ccccc--CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCC
Q psy17326        131 NDCVN--APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       131 npC~~--~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      ++|..  ++|.+.|+..+   ++|+|.|+.||.|.. +.+|...
T Consensus        82 deC~~~~~~C~~~C~n~~---gsy~C~C~~Gy~l~~dG~~C~~~  122 (195)
T 1nfu_B           82 KLCSLDNGDCDQFCHEEQ---NSVVCSCARGYTLADNGKACIPT  122 (195)
T ss_dssp             CGGGTGGGGCSSEEEEET---TEEEEECCTTEEECTTSSCEEES
T ss_pred             ccccCCCCCCCCEeECCC---CCeEEECCCCceeCCCCCccccC
Confidence            67874  58999999875   589999999999988 4579754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.15  E-value=0.22  Score=41.91  Aligned_cols=80  Identities=15%  Similarity=0.140  Sum_probs=56.7

Q ss_pred             EeCCCCCccEEEEeCCCCeEEEE-------eCCCCeEEEEecCCCceeEeEEEeecccceeEEeC--Ccccccceeeeee
Q psy17326         10 ISTKIYWPNGLTLDIATRRVYFA-------ESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG--SHYLLHPHSLTIF   80 (264)
Q Consensus        10 v~~~l~~P~gLaiD~~~~rLYW~-------D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~--~~~l~~P~~l~v~   80 (264)
                      +...+..|.++++| ..++|||+       +...+.|.+.+.+....+.            +...  ......|.+|++.
T Consensus        13 ~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~~~~~~~~~~~~~~i~~~   79 (314)
T 1pjx_A           13 VTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV------------ICKPEVNGYGGIPAGCQCD   79 (314)
T ss_dssp             EECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEE------------EECCEETTEECCEEEEEEC
T ss_pred             hhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE------------EEecccCCCCCCCceEEEe
Confidence            45689999999999 57799999       7777889998875444333            2210  0012568999985


Q ss_pred             C--CEEEEEcCCCCeEEEEEccCCce
Q psy17326         81 E--DTLYWTDRQLNRVLSAHKFRGKN  104 (264)
Q Consensus        81 ~--d~lYwtD~~~~~i~~~~k~~g~~  104 (264)
                      .  +.||+++... .|.+.+.. |+.
T Consensus        80 ~~~g~l~v~~~~~-~l~~~d~~-g~~  103 (314)
T 1pjx_A           80 RDANQLFVADMRL-GLLVVQTD-GTF  103 (314)
T ss_dssp             SSSSEEEEEETTT-EEEEEETT-SCE
T ss_pred             cCCCcEEEEECCC-CEEEEeCC-CCE
Confidence            4  5899998754 78888875 553

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=95.12  E-value=0.0067  Score=43.16  Aligned_cols=39  Identities=26%  Similarity=0.778  Sum_probs=28.7

Q ss_pred             ccccccCC--c-ccceecCCCCCCCeeeecCCCeEEcC-CCCCCCC
Q psy17326        130 RNDCVNAP--C-QQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       130 ~npC~~~~--C-shlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      .++|..+.  | .+.|+..+   ++|+|.|+.||++.+ +++|++.
T Consensus         3 ideC~~~~~~C~~~~C~n~~---g~y~C~C~~G~~~~~~g~~C~di   45 (87)
T 1z6c_A            3 VDECSLKPSICGTAVCKNIP---GDFECECPEGYRYNLKSKSCEDI   45 (87)
T ss_dssp             SCSSSSSSSSBTTSSCCCBT---TBCCCSSSTTCEEETTTTEEECC
T ss_pred             cccccCCCCCCCCCEeECCC---CCEEEECCCCceECCCCCcCCCc
Confidence            35676543  7 46898875   589999999999877 4568643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.05  E-value=0.072  Score=47.45  Aligned_cols=95  Identities=12%  Similarity=0.076  Sum_probs=66.0

Q ss_pred             CCCccEEEEeCC---CCeEEEEeCC-------CCeEEEEecCCC-----ceeEeEEEeecccceeEEeCC----cccccc
Q psy17326         14 IYWPNGLTLDIA---TRRVYFAESK-------LDFIDFCNYDGT-----SRQQDTLYWTDRQLNRVVAGS----HYLLHP   74 (264)
Q Consensus        14 l~~P~gLaiD~~---~~rLYW~D~~-------~~~Ie~~~ldG~-----~r~~~~lfwtd~~~~~vl~~~----~~l~~P   74 (264)
                      ...|.||++++.   +++||.++..       ..+|.+.++++.     .+++            ++...    ...+.+
T Consensus        65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~------------i~~~~p~~~~~~h~~  132 (353)
T 2g8s_A           65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRT------------VFRQMPKLSTGNHFG  132 (353)
T ss_dssp             TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEE------------EEECSSCCBSSSCCC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEE------------EEEECCCCCCCcccC
Confidence            346789999996   8999999865       457888888764     2333            44331    123457


Q ss_pred             eeeee-eCCEEEEEcCC-------------CCeEEEEEccCCc-------------eeEEEeccCCCceeEEEe
Q psy17326         75 HSLTI-FEDTLYWTDRQ-------------LNRVLSAHKFRGK-------------NQTVVSHLISQPLSIHVH  121 (264)
Q Consensus        75 ~~l~v-~~d~lYwtD~~-------------~~~i~~~~k~~g~-------------~~~~i~~~~~~p~~i~v~  121 (264)
                      -+|++ -.++||++...             ..+|.|++.. |+             ..++...++..|.+|.+.
T Consensus       133 ~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d  205 (353)
T 2g8s_A          133 GRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMN  205 (353)
T ss_dssp             CCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEE
T ss_pred             ccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCCCCCCCcCCCCCCccEEEEcCcCccceEEE
Confidence            88888 45699999643             3479999874 43             445666677888998865

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.05  E-value=0.2  Score=42.86  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=50.8

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCC-----CeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEE
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKL-----DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYW   86 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~-----~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYw   86 (264)
                      .+..|+||++++..+.||++|...     +.|.+.++++.......          ++... ....|.+|++. ++.||-
T Consensus       186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~----------~~~~~-~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRR----------HFASV-PDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEE----------EEECC-SSSCCCSEEECTTSCEEE
T ss_pred             cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCe----------EEEEC-CCCCCCeEEECCCCCEEE
Confidence            677899999999999999999874     78999998864311100          22221 23578889884 445555


Q ss_pred             EcCCCCeEEEEEccCCc
Q psy17326         87 TDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        87 tD~~~~~i~~~~k~~g~  103 (264)
                      +.  ..+|.+.+. .|+
T Consensus       255 ~~--~~gv~~~~~-~g~  268 (305)
T 3dr2_A          255 SS--GTGVCVFDS-DGQ  268 (305)
T ss_dssp             CC--SSEEEEECT-TSC
T ss_pred             ec--CCcEEEECC-CCC
Confidence            54  245766665 344

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.99  E-value=0.28  Score=41.87  Aligned_cols=83  Identities=23%  Similarity=0.255  Sum_probs=54.6

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC--CCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD--GTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDR   89 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld--G~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~   89 (264)
                      .+..|+++++++..+.||+++...+.|.+.+++  |.....   +    . .++.........|.+|++. ++.||.+++
T Consensus       180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~---~----~-~~~~~~~~~~~~~~~i~~d~~G~l~v~~~  251 (333)
T 2dg1_A          180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP---F----G-ATIPYYFTGHEGPDSCCIDSDDNLYVAMY  251 (333)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE---E----E-EEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred             CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc---c----c-ceEEEecCCCCCCCceEECCCCCEEEEEc
Confidence            455799999999888899999888899999984  443221   0    0 0011110012468888884 457888887


Q ss_pred             CCCeEEEEEccCCce
Q psy17326         90 QLNRVLSAHKFRGKN  104 (264)
Q Consensus        90 ~~~~i~~~~k~~g~~  104 (264)
                      ..+.|.+.+. .|+.
T Consensus       252 ~~~~v~~~d~-~g~~  265 (333)
T 2dg1_A          252 GQGRVLVFNK-RGYP  265 (333)
T ss_dssp             TTTEEEEECT-TSCE
T ss_pred             CCCEEEEECC-CCCE
Confidence            7777887776 4443

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=94.98  E-value=0.011  Score=42.07  Aligned_cols=39  Identities=38%  Similarity=0.931  Sum_probs=31.1

Q ss_pred             cccccccCCcccceecCCCCCCCeeeecC--CCeEEcCC-CCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCI--AGFRVTKD-GRCVE  170 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp--~G~~L~~~-~tC~~  170 (264)
                      ..++|..+.|.+.|+..+   ++|+|.||  .||.+..+ .+|.+
T Consensus        44 dideC~~~~C~~~C~n~~---g~y~C~C~g~~G~~~~~~~~~C~d   85 (87)
T 1z6c_A           44 DIDECSENMCAQLCVNYP---GGYTCYCDGKKGFKLAQDQKSCEV   85 (87)
T ss_dssp             CCCHHHHSCCSSEECCCS---SSCCEECCSSSCCBCCTTSSSCBC
T ss_pred             CcCeeCCCCCCCEEEccC---CCEEEECCCCcCCcccCCCCcceE
Confidence            357787788999999876   68999995  88888774 57875

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=94.97  E-value=0.011  Score=45.61  Aligned_cols=38  Identities=21%  Similarity=0.670  Sum_probs=30.6

Q ss_pred             ccccc--CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCC
Q psy17326        131 NDCVN--APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       131 npC~~--~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      ++|..  ++|.+.|+..+   ++|+|.|+.||.|.. +++|.+.
T Consensus        82 d~C~~~~~~C~~~C~~~~---g~y~C~C~~Gy~l~~~g~~C~~~  122 (134)
T 2vh0_B           82 KLCSLDNGDCDQFCHEEQ---NSVVCSCARGYTLADNGKACIPT  122 (134)
T ss_dssp             CGGGTGGGGCSSEEEEET---TEEEEECCTTEEECTTSSCEEES
T ss_pred             CccccCCCCCCCEeECCC---CCEEEECCCCcEECCCCCccCcC
Confidence            67874  57999999875   589999999999987 4578643

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=94.97  E-value=0.029  Score=38.46  Aligned_cols=38  Identities=29%  Similarity=0.844  Sum_probs=27.0

Q ss_pred             cccccc--CCcc--cceecCCCCCCCeeee---------------------------cCCCeEEcCCCCCCC
Q psy17326        130 RNDCVN--APCQ--QLCLLSPSSSTGYTCK---------------------------CIAGFRVTKDGRCVE  170 (264)
Q Consensus       130 ~npC~~--~~Cs--hlCl~~p~~~~~~~C~---------------------------Cp~G~~L~~~~tC~~  170 (264)
                      .++|..  +.|.  +.|+..+   ++|+|.                           |+.||+|....+|++
T Consensus         3 idEC~~~~~~C~~~~~C~Nt~---Gsy~C~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~Gy~~~~~~~C~D   71 (71)
T 2kl7_A            3 VNECLTIPEACKGEMKCINHY---GGYLCLPRSAAVINDLHGEGPPPPVPPAQHPNPCPPGYEPDDQDSCVD   71 (71)
T ss_dssp             SCCTTCCCCSCTTEEEEEETT---CCEEEEETTSCCCSCCSCSSCCCSSCSCSSCCCSCTTEEEECCCCSCC
T ss_pred             cccccCCCCCCCCCCEeECCC---CCeEecccCCcccccccCCccccccccCccccCCCCCeeeCCCCcccC
Confidence            356653  3574  5899886   689999                           888888874447863

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.88  E-value=0.26  Score=44.16  Aligned_cols=113  Identities=13%  Similarity=0.017  Sum_probs=65.5

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEec--CCCceeEeEEEeec--cc-ceeEEeCCcccccceeeeeeCC
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNY--DGTSRQQDTLYWTD--RQ-LNRVVAGSHYLLHPHSLTIFED   82 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~l--dG~~r~~~~lfwtd--~~-~~~vl~~~~~l~~P~~l~v~~d   82 (264)
                      .|...++..|.||++|+ +++||.+|...+.-+.++.  .|.|---...++..  .+ ...++.-......|.||+++++
T Consensus       195 ~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g  273 (347)
T 3das_A          195 PVYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEG  273 (347)
T ss_dssp             CEEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETT
T ss_pred             eEEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcC
Confidence            35677999999999999 6999999987643333332  44432000000000  00 0001110001136899999999


Q ss_pred             EEEEEcCCCCeEEEEEccCCce---eEEEec-cCCCceeEEEe
Q psy17326         83 TLYWTDRQLNRVLSAHKFRGKN---QTVVSH-LISQPLSIHVH  121 (264)
Q Consensus        83 ~lYwtD~~~~~i~~~~k~~g~~---~~~i~~-~~~~p~~i~v~  121 (264)
                      .+|-.+....+|.++....++.   .+.+.. ...+|.+|.+-
T Consensus       274 ~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~  316 (347)
T 3das_A          274 SVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPA  316 (347)
T ss_dssp             EEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEE
T ss_pred             ceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEEC
Confidence            9999999999999887644321   222322 34566666654

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=94.73  E-value=0.013  Score=41.48  Aligned_cols=38  Identities=24%  Similarity=0.727  Sum_probs=27.5

Q ss_pred             ccccccC--Cccc-ceecCCCCCCCeeeecCCCeEEcC--CCCCCC
Q psy17326        130 RNDCVNA--PCQQ-LCLLSPSSSTGYTCKCIAGFRVTK--DGRCVE  170 (264)
Q Consensus       130 ~npC~~~--~Csh-lCl~~p~~~~~~~C~Cp~G~~L~~--~~tC~~  170 (264)
                      .++|..+  .|.+ .|+..+   ++|+|.|+.||++..  ++.|.+
T Consensus         3 ideC~~~~~~C~~g~C~n~~---g~y~C~C~~Gy~~~~~~g~~C~d   45 (86)
T 1lmj_A            3 IDECRISPDLCGRGQCVNTP---GDFECKCDEGYESGFMMMKNCMD   45 (86)
T ss_dssp             CCTTTTCSSTTTTSCEEEET---TEEEECCCSSEEECTTTSSSEEE
T ss_pred             cccccCCCCCCCCCEEECCC---CCEEeeCCCCcCccCCCCCccCC
Confidence            3566643  3764 899876   589999999999864  456754

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=94.67  E-value=0.019  Score=50.39  Aligned_cols=39  Identities=38%  Similarity=1.006  Sum_probs=31.4

Q ss_pred             ccccccc---CCcccceecCCCCCCCeeeecCCCeEEcCC-CCCCC
Q psy17326        129 TRNDCVN---APCQQLCLLSPSSSTGYTCKCIAGFRVTKD-GRCVE  170 (264)
Q Consensus       129 ~~npC~~---~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~-~tC~~  170 (264)
                      ..++|..   +.|.+.|+..+   ++|+|.|+.||.+.++ .+|.+
T Consensus        42 ~~~eC~~~~~~~C~~~C~~~~---g~~~C~C~~g~~~~~~~~~C~~   84 (317)
T 3h5c_B           42 AKNECHPERTDGCQHFCLPGQ---ESYTCSCAQGYRLGEDHKQCVP   84 (317)
T ss_dssp             CSSSCCTTCTTSCSSEEECCS---SSCEEECCTTEECCTTSSCCEE
T ss_pred             CcccCCCCCCCCCcCccccCC---CeeEEecccccccccccccccc
Confidence            4578875   68999999875   6899999999998774 56765

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=94.62  E-value=0.027  Score=36.35  Aligned_cols=34  Identities=24%  Similarity=0.784  Sum_probs=22.8

Q ss_pred             cccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ..+||.+++   .|+.... .++++|.||.||+   +..|+
T Consensus        10 ~~~pC~nGG---~C~~~~~-~~~~~C~C~~Gyt---G~~Ce   43 (53)
T 1nql_B           10 HDGYCLHDG---VCMYIEA-LDKYACNCVVGYI---GERCQ   43 (53)
T ss_dssp             TCCEECTTC---EEEEETT-TTEEEEEECTTEE---STTSC
T ss_pred             CCCCCCCCe---EEeeecC-CCCEEEecCCCCc---CCCCC
Confidence            357888754   4552111 2579999999997   56785

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=94.62  E-value=0.015  Score=40.89  Aligned_cols=36  Identities=25%  Similarity=0.835  Sum_probs=25.8

Q ss_pred             cccccc-CCccc-ceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVN-APCQQ-LCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~-~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      .++|.. +.|.| .|+..+   ++|+|.|+.||++. +..|.
T Consensus         5 ideC~~~~~C~~g~C~n~~---g~y~C~C~~Gy~~~-g~~C~   42 (82)
T 1emn_A            5 MDECKEPDVCKHGQCINTD---GSYRCECPFGYILA-GNECV   42 (82)
T ss_dssp             CCSSSSTTSCSSSEECCCS---SCCCEECCTTEEEE-TTEEE
T ss_pred             cccCCCCCCcCCCEEEecC---CCEEEECCCCeECC-CCccC
Confidence            356664 56665 898875   58999999999873 34564

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=94.60  E-value=0.039  Score=34.08  Aligned_cols=32  Identities=31%  Similarity=0.803  Sum_probs=21.2

Q ss_pred             cccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       131 npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      +||.+++   .|+.... .++|+|.||.||+   +..|.
T Consensus         9 ~pC~ngg---~C~~~~~-~~~~~C~C~~G~~---G~~Ce   40 (45)
T 1a3p_A            9 GYCLNGG---VXMHIES-LDSYTCNCVIGYS---GDRCQ   40 (45)
T ss_dssp             SCCSSSC---EEEECTT-TSSEEEECCTTEE---TTTTC
T ss_pred             CCCCCCC---EEEeecC-CCCEEEEcCCCCc---CCcCC
Confidence            4777653   5662111 3589999999996   55675

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=94.58  E-value=0.015  Score=45.39  Aligned_cols=39  Identities=26%  Similarity=0.767  Sum_probs=30.2

Q ss_pred             ccccccCCccc-ceecCCCCCCCeeeecCCCeEEcC-CCCCCCC
Q psy17326        130 RNDCVNAPCQQ-LCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       130 ~npC~~~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      .++|..++|.+ .|+..+   ++|+|.|+.||++.. +++|.+.
T Consensus         4 ideC~~~pC~ng~C~n~~---g~y~C~C~~G~~g~~~~~~C~~~   44 (147)
T 2w86_A            4 IDECESSPCINGVCKNSP---GSFICECSSESTLDPTKTICIET   44 (147)
T ss_dssp             CCGGGGCCSBTSEEEEET---TEEEEECCTTEEECTTSSBEEEC
T ss_pred             CccCcCCCCCCCEeECCC---CCEEeECCCCcccCCCCCeecCC
Confidence            46677667764 899875   589999999999987 5578654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=94.39  E-value=0.31  Score=41.62  Aligned_cols=77  Identities=8%  Similarity=0.116  Sum_probs=57.6

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC-----cccccceeeee-eCCEEEE
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS-----HYLLHPHSLTI-FEDTLYW   86 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~-----~~l~~P~~l~v-~~d~lYw   86 (264)
                      .+..+.||++|+.+++||-.....+.+...+.+|.-+..  +         -+...     ..+.+|-|||+ .++.||-
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~--~---------~L~~g~~~l~~~~~qpEGia~d~~G~lyI  239 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGE--M---------SLTKGSRGLSHNIKQAEGVAMDASGNIYI  239 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE--E---------ECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEE--E---------EcCCccCCcccccCCCCeeEECCCCCEEE
Confidence            466899999999999999999999999999999984433  0         12211     12579999999 5668999


Q ss_pred             EcCCCCeEEEEEccC
Q psy17326         87 TDRQLNRVLSAHKFR  101 (264)
Q Consensus        87 tD~~~~~i~~~~k~~  101 (264)
                      +... +.+++..|..
T Consensus       240 vsE~-n~~y~f~~~~  253 (255)
T 3qqz_A          240 VSEP-NRFYRFTPQS  253 (255)
T ss_dssp             EETT-TEEEEEEC--
T ss_pred             EcCC-ceEEEEEecC
Confidence            8544 5778777654

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=94.38  E-value=0.014  Score=45.54  Aligned_cols=37  Identities=22%  Similarity=0.758  Sum_probs=28.8

Q ss_pred             cccccc--CCccc-ceecCCCCCCCeeeecCCCeEEcC-CCCCC
Q psy17326        130 RNDCVN--APCQQ-LCLLSPSSSTGYTCKCIAGFRVTK-DGRCV  169 (264)
Q Consensus       130 ~npC~~--~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~  169 (264)
                      .++|..  +.|.+ .|+..+   ++|+|.|+.||++.. +++|+
T Consensus       107 ideC~~~~~~C~~g~C~n~~---g~y~C~C~~Gy~g~~~~~~C~  147 (147)
T 2w86_A          107 IDECEVFPGVCKNGLCVNTR---GSFKCQCPSGMTLDATGRICL  147 (147)
T ss_dssp             CCHHHHSTTCSSSSEEEEET---TEEEEECCTTCCBCTTSSCBC
T ss_pred             cccccCCCCCCCCCEEECCC---CCEEeeCCCCCccCCCCCeeC
Confidence            467764  35875 899875   689999999999988 56784

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=94.37  E-value=0.017  Score=38.59  Aligned_cols=29  Identities=34%  Similarity=1.008  Sum_probs=21.5

Q ss_pred             ccccccCCccc----ceecCCCCCCCeeeecCCCeE
Q psy17326        130 RNDCVNAPCQQ----LCLLSPSSSTGYTCKCIAGFR  161 (264)
Q Consensus       130 ~npC~~~~Csh----lCl~~p~~~~~~~C~Cp~G~~  161 (264)
                      .++|..++|.+    .|...+   ++|+|.||.||.
T Consensus        11 ~d~C~snPC~nga~gtC~~~~---g~y~C~C~~Gy~   43 (61)
T 2k2s_B           11 PAACSSNPCGPEAAGTCKETN---SGYICRCNQGYR   43 (61)
T ss_dssp             CCHHHHCSSCSSSCCEEEECS---SEEEEECCTTEE
T ss_pred             CCcCcCCCCcCCCccccccCC---CceEeECCCCCc
Confidence            35565556652    688775   589999999997

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=94.26  E-value=0.047  Score=35.01  Aligned_cols=32  Identities=34%  Similarity=0.940  Sum_probs=22.0

Q ss_pred             cccccCCccccee--cCCCCCCCeeeecCCCeEEcCCCCCCCC
Q psy17326        131 NDCVNAPCQQLCL--LSPSSSTGYTCKCIAGFRVTKDGRCVEE  171 (264)
Q Consensus       131 npC~~~~CshlCl--~~p~~~~~~~C~Cp~G~~L~~~~tC~~~  171 (264)
                      +||.+++   .|+  ...   ++|+|.||.||+   +..|...
T Consensus        12 ~pC~ngg---~C~~~~~~---~~~~C~C~~G~~---G~~Ce~~   45 (53)
T 1egf_A           12 GYCLNGG---VCMHIESL---DSYTCNCVIGYS---GDRCQTR   45 (53)
T ss_dssp             CSSCSSC---EEEEESSS---SCEEEECCTTCC---SSSSCCC
T ss_pred             CcCCCCc---EEEeeCCC---CCEEEECCCCCc---CCcCCcc
Confidence            4666543   677  332   589999999995   5678643

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=94.19  E-value=0.026  Score=35.29  Aligned_cols=32  Identities=22%  Similarity=0.665  Sum_probs=21.3

Q ss_pred             cccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       131 npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      +||.++    .|..... .++|+|.|+.||+   +..|+.
T Consensus        12 ~pC~nG----~C~~~~~-~~~~~C~C~~Gyt---G~~Ce~   43 (46)
T 1k36_A           12 GYCLHG----QCIYLVD-MSQNYCRCEVGYT---GVRCEH   43 (46)
T ss_dssp             SSCSSE----EEEEETT-TTEEEEEECTTCS---STTSCC
T ss_pred             CCCCCC----EeeccCC-CCCEEEECCCCCc---cCCCCc
Confidence            666663    5654321 2479999999995   567863

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=94.12  E-value=0.015  Score=43.74  Aligned_cols=32  Identities=22%  Similarity=0.570  Sum_probs=25.8

Q ss_pred             cccccc-CCcccceecCCCCCCCeeeecCCCeEEcC
Q psy17326        130 RNDCVN-APCQQLCLLSPSSSTGYTCKCIAGFRVTK  164 (264)
Q Consensus       130 ~npC~~-~~CshlCl~~p~~~~~~~C~Cp~G~~L~~  164 (264)
                      .++|.. +.|.+.|+..+   ++|+|.|+.||++..
T Consensus        80 ideC~~~~~C~~~C~n~~---g~y~C~C~~G~~g~~  112 (118)
T 1dx5_I           80 IDECENGGFCSGVCHNLP---GTFECICGPDSALAG  112 (118)
T ss_dssp             CCHHHHCSSCSSEEEECS---SSEEEEECSSSSCEE
T ss_pred             ccccCCCCCCcCeEEeCC---CCEEEECCCCCccCC
Confidence            467776 78888999875   589999999998765

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=94.07  E-value=0.02  Score=45.32  Aligned_cols=38  Identities=21%  Similarity=0.691  Sum_probs=29.3

Q ss_pred             ccccccc--CCccc-ceecCCCCCCCeeeecCCCeEEcC-CCCCC
Q psy17326        129 TRNDCVN--APCQQ-LCLLSPSSSTGYTCKCIAGFRVTK-DGRCV  169 (264)
Q Consensus       129 ~~npC~~--~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~  169 (264)
                      ..++|..  +.|.+ .|+..+   ++|+|.|+.||++.. +++|+
T Consensus       121 dideC~~~~~~C~~g~C~n~~---gsy~C~C~~Gy~g~~d~~~C~  162 (162)
T 1uzk_A          121 DIDECQELPGLCQGGKCINTF---GSFQCRCPTGYYLNEDTRVCD  162 (162)
T ss_dssp             ECCHHHHCGGGGBTSEEEECS---SCEEEECCTTCCBCTTTCBBC
T ss_pred             ccccccCCCCCcCCCEeEcCC---CCEEeeCCCCccCCCCCCccC
Confidence            3567764  46874 999875   689999999999987 45784

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=94.02  E-value=0.03  Score=44.29  Aligned_cols=39  Identities=28%  Similarity=0.834  Sum_probs=29.8

Q ss_pred             cccccc-CCc-ccceecCCCCCCCeeeecCCCeEEcC-CCCCCCC
Q psy17326        130 RNDCVN-APC-QQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       130 ~npC~~-~~C-shlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      .++|.. ++| .+.|+..+   ++|+|.|+.||+|.+ +++|++.
T Consensus         3 ideC~~~~~C~~~~C~n~~---gsy~C~C~~Gy~~~~~g~~C~d~   44 (162)
T 1uzk_A            3 VNECLDPTTCISGNCVNTP---GSYICDCPPDFELNPTRVGCVDT   44 (162)
T ss_dssp             CCGGGSTTSSBTSEEEEET---TEEEEECCTTCEECTTSSBEECC
T ss_pred             cccCCCCCCCCCCEeECCC---CCEEEeCCCCCeECCCCCcccCC
Confidence            356663 566 47999875   689999999999987 5679754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=93.72  E-value=0.98  Score=38.76  Aligned_cols=76  Identities=7%  Similarity=-0.073  Sum_probs=56.0

Q ss_pred             cEEEEeCCCCeEEEEeCCCC--eEEEEecCCCceeEeEEEeecccceeEEeCCccccccee--eeeeCCEEEEEcCCCCe
Q psy17326         18 NGLTLDIATRRVYFAESKLD--FIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHS--LTIFEDTLYWTDRQLNR   93 (264)
Q Consensus        18 ~gLaiD~~~~rLYW~D~~~~--~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~--l~v~~d~lYwtD~~~~~   93 (264)
                      .||+++  .++||-+....+  .|...++.......            -+.-   -..+|+  |++.+++||-.+|..+.
T Consensus        46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~------------~~~l---~~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQ------------QIEL---GKRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEE------------EEEC---CTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEE------------EEec---CCccceeEEEEeCCEEEEEEeeCCE
Confidence            899998  579999886544  88888887443322            1221   135655  78899999999999999


Q ss_pred             EEEEEccCCceeEEEec
Q psy17326         94 VLSAHKFRGKNQTVVSH  110 (264)
Q Consensus        94 i~~~~k~~g~~~~~i~~  110 (264)
                      +...+..+++....+..
T Consensus       109 v~v~D~~t~~~~~ti~~  125 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNY  125 (262)
T ss_dssp             EEEEETTTCCEEEEEEC
T ss_pred             EEEEECccCcEEEEEEC
Confidence            99999888776665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.71  E-value=0.61  Score=40.21  Aligned_cols=74  Identities=7%  Similarity=0.006  Sum_probs=58.2

Q ss_pred             cEEEEeCCCCeEEEEeCCCCeEEEEecCCCc-eeEeEEEeecccceeEEeCCccccccee--eeeeCCEEEEEcCCCCeE
Q psy17326         18 NGLTLDIATRRVYFAESKLDFIDFCNYDGTS-RQQDTLYWTDRQLNRVVAGSHYLLHPHS--LTIFEDTLYWTDRQLNRV   94 (264)
Q Consensus        18 ~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~-r~~~~lfwtd~~~~~vl~~~~~l~~P~~--l~v~~d~lYwtD~~~~~i   94 (264)
                      .||++|  .++||-+....+.|...++.... .+.            + -.    ..+||  |++.+++||-..|..+.+
T Consensus        58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~------------~-l~----~~~FgeGit~~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWM------------E-RL----GNIFAEGLASDGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEE------------E-EC----TTCCEEEEEECSSCEEEEESSSCEE
T ss_pred             ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeE------------E-CC----CCcceeEEEEeCCEEEEEEccCCEE
Confidence            799998  68999999998899988887443 333            4 22    35666  899999999999999999


Q ss_pred             EEEEccCCceeEEEec
Q psy17326         95 LSAHKFRGKNQTVVSH  110 (264)
Q Consensus        95 ~~~~k~~g~~~~~i~~  110 (264)
                      ...+..+++....+..
T Consensus       119 ~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A          119 FTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCcCcEEEEEeC
Confidence            9999888776665543

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=93.45  E-value=0.052  Score=36.05  Aligned_cols=34  Identities=38%  Similarity=0.916  Sum_probs=21.4

Q ss_pred             ccccccCCcccceecCC--CCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSP--SSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p--~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      .+||.+++   .|+...  +..++++|.||.||+   +..|.
T Consensus        11 ~~pC~ngG---~C~~~~~~~~~~~y~C~C~~Gf~---G~~Ce   46 (63)
T 1hae_A           11 KTFCVNGG---ECFMVKDLSNPSRYLCKCQPGFT---GARCT   46 (63)
T ss_dssp             HTTSCTTC---EEEEEESSSSSCCEEEECCTTEE---STTSC
T ss_pred             CCcCCCCc---EEecCCccCCCCCEEEECCCCCc---CCccC
Confidence            45565542   566411  113589999999996   55785

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=93.35  E-value=0.83  Score=39.21  Aligned_cols=81  Identities=9%  Similarity=0.047  Sum_probs=57.1

Q ss_pred             ccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeC--CcccccceeeeeeCCEEEEEcCCCCeE
Q psy17326         17 PNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG--SHYLLHPHSLTIFEDTLYWTDRQLNRV   94 (264)
Q Consensus        17 P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~--~~~l~~P~~l~v~~d~lYwtD~~~~~i   94 (264)
                      |.|..+-+..++||-++ ..+.|..+|........           ++..+  ...+..|++|.+.+++||-+.|.++.|
T Consensus       107 ~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~-----------~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V  174 (266)
T 2iwa_A          107 KDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIK-----------KHNVKYNGHRVIRLNELEYINGEVWANIWQTDCI  174 (266)
T ss_dssp             SSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEE-----------EEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred             CCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEE-----------EEEECCCCcccccceeEEEECCEEEEecCCCCeE
Confidence            55555555578888887 57888888876543221           02221  112446888988889999999999999


Q ss_pred             EEEEccCCceeEEEe
Q psy17326         95 LSAHKFRGKNQTVVS  109 (264)
Q Consensus        95 ~~~~k~~g~~~~~i~  109 (264)
                      .+++..+|+-...+.
T Consensus       175 ~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          175 ARISAKDGTLLGWIL  189 (266)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEEEEEE
Confidence            999998888766664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.32  E-value=0.39  Score=44.38  Aligned_cols=92  Identities=16%  Similarity=0.245  Sum_probs=63.7

Q ss_pred             ccEEEEeCC---CCeEEEEeCC------------CCeEEEEecCCC-----ceeEeEEEeecccceeEEeC--Ccccccc
Q psy17326         17 PNGLTLDIA---TRRVYFAESK------------LDFIDFCNYDGT-----SRQQDTLYWTDRQLNRVVAG--SHYLLHP   74 (264)
Q Consensus        17 P~gLaiD~~---~~rLYW~D~~------------~~~Ie~~~ldG~-----~r~~~~lfwtd~~~~~vl~~--~~~l~~P   74 (264)
                      +.|||+++.   +++||.+++.            ..+|.+.++++.     ++++            ++..  ....+.+
T Consensus        79 llgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~------------i~~~~p~~~~H~~  146 (454)
T 1cru_A           79 LLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVD------------LLAGLPSSKDHQS  146 (454)
T ss_dssp             EEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEE------------EEEEECCCSSCCE
T ss_pred             eeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEE------------EEEcCCCCCCCCC
Confidence            449999986   8999999864            357888888653     2333            4431  1123557


Q ss_pred             eeeee-eCCEEEEEcCC--------------------------------CCeEEEEEccCCc-----------eeEEEec
Q psy17326         75 HSLTI-FEDTLYWTDRQ--------------------------------LNRVLSAHKFRGK-----------NQTVVSH  110 (264)
Q Consensus        75 ~~l~v-~~d~lYwtD~~--------------------------------~~~i~~~~k~~g~-----------~~~~i~~  110 (264)
                      .+|++ -.++||.+...                                ..+|.|++. +|+           ..+++..
T Consensus       147 ~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~-dG~ip~~Npf~~~~~~ei~a~  225 (454)
T 1cru_A          147 GRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNL-DGSIPKDNPSFNGVVSHIYTL  225 (454)
T ss_dssp             EEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECT-TSCCCTTCCEETTEECSEEEB
T ss_pred             CeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeC-CCCCCCCCCCCCCCcceEEEE
Confidence            88888 45699998432                                357999987 454           4567777


Q ss_pred             cCCCceeEEEe
Q psy17326        111 LISQPLSIHVH  121 (264)
Q Consensus       111 ~~~~p~~i~v~  121 (264)
                      ++..|.+|++.
T Consensus       226 G~RNp~gla~d  236 (454)
T 1cru_A          226 GHRNPQGLAFT  236 (454)
T ss_dssp             CCSEEEEEEEC
T ss_pred             CCCCcceEEEC
Confidence            88889999764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.14  E-value=1.7  Score=36.45  Aligned_cols=100  Identities=10%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecC--CCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCC
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYD--GTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQ   90 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld--G~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~   90 (264)
                      .+|.++++++..+.||.+....+.|...+++  +...+.  +        ..+..   -..|.++++.  +.+||.+...
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~--~--------~~~~~---~~~~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK--E--------GFQPT---ETQPRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE--E--------EEEEC---SSSCCCEEECTTSSEEEEECTT
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE--e--------eeecC---CCccceEEECCCCCEEEEecCC
Confidence            3667899999999999999888899998887  433332  0        01222   1247788874  6689999876


Q ss_pred             CCeEE--EEEccCCceeEEEec-cCCCceeEEEecccCCC
Q psy17326         91 LNRVL--SAHKFRGKNQTVVSH-LISQPLSIHVHHPSLQP  127 (264)
Q Consensus        91 ~~~i~--~~~k~~g~~~~~i~~-~~~~p~~i~v~~~~~qp  127 (264)
                      .+.|.  .++..+|+...+-.. .-..|.+|.+.....+|
T Consensus       298 ~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~~  337 (343)
T 1ri6_A          298 SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGGS  337 (343)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC---
T ss_pred             CCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccCCc
Confidence            66554  446556643322111 22578899887655554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.69  E-value=1.2  Score=39.78  Aligned_cols=70  Identities=10%  Similarity=0.118  Sum_probs=48.5

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCC-----------------CCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccce
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESK-----------------LDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPH   75 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~-----------------~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~   75 (264)
                      .+..||.+++|. .+++|.++..                 .+.|.+.+.  ...++            +..   .+..|.
T Consensus       163 ~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~------------~~~---~l~~pN  224 (355)
T 3sre_A          163 LLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV------------VAE---GFDFAN  224 (355)
T ss_dssp             TCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEE------------EEE---EESSEE
T ss_pred             CCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEE------------eec---CCcccC
Confidence            578899999997 4676666542                 234444443  12222            443   378999


Q ss_pred             eeeee--CCEEEEEcCCCCeEEEEEcc
Q psy17326         76 SLTIF--EDTLYWTDRQLNRVLSAHKF  100 (264)
Q Consensus        76 ~l~v~--~d~lYwtD~~~~~i~~~~k~  100 (264)
                      ||++.  +.+||++|...+.|.+.+..
T Consensus       225 Gia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          225 GINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            99995  56999999999999887754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=92.30  E-value=4.1  Score=34.42  Aligned_cols=89  Identities=7%  Similarity=-0.043  Sum_probs=61.2

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCC--CeEEEEecCCCceeEeEEEeecccceeEEeCCcccccc--eeeeeeCCEEEEEc
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKL--DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHP--HSLTIFEDTLYWTD   88 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~--~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P--~~l~v~~d~lYwtD   88 (264)
                      .-..-.||++|.  ++||-.....  +.|...++.......            -+.-   -.++  -||++.+++||-.+
T Consensus        19 ~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~------------~~~l---~~~~fgeGi~~~~~~ly~lt   81 (243)
T 3mbr_X           19 TTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQ------------RAEV---PPPYFGAGIVAWRDRLIQLT   81 (243)
T ss_dssp             TTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEE------------EEEC---CTTCCEEEEEEETTEEEEEE
T ss_pred             CccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEE------------EEeC---CCCcceeEEEEeCCEEEEEE
Confidence            344567999995  8999987654  589999987443322            1211   1345  45688999999999


Q ss_pred             CCCCeEEEEEccCCceeEEEeccCCCceeEE
Q psy17326         89 RQLNRVLSAHKFRGKNQTVVSHLISQPLSIH  119 (264)
Q Consensus        89 ~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~  119 (264)
                      |..+.+...+..+.+....+... ..+.++.
T Consensus        82 w~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt  111 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTPRARFRYP-GEGWALT  111 (243)
T ss_dssp             SSSSEEEEEETTTTEEEEEEECS-SCCCEEE
T ss_pred             eeCCEEEEEECCcCcEEEEEeCC-CCceEEe
Confidence            99999999998787766655543 2334443

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=92.15  E-value=0.06  Score=34.37  Aligned_cols=34  Identities=29%  Similarity=0.710  Sum_probs=22.4

Q ss_pred             ccccccCCcccceecCC-CCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSP-SSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p-~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      .+||.|++   .|+..+ ...++|+|.||.||.   +..|+
T Consensus        13 ~~pC~NGG---tC~~~~~~~~~~y~C~C~~Gf~---G~~Ce   47 (52)
T 3ca7_A           13 AWYCLNDA---HCFAVKIADLPVYSCECAIGFM---GQRCE   47 (52)
T ss_dssp             HHTSCTTC---EEEEEEETTEEEEEEECCTTEE---STTSC
T ss_pred             CCcCCCCC---EEecCccCCCCCEEEECCCCCc---CCCCc
Confidence            57898864   355321 012479999999997   55675

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=91.98  E-value=0.092  Score=40.49  Aligned_cols=39  Identities=18%  Similarity=0.658  Sum_probs=29.8

Q ss_pred             cccccc--CCcc--cceecCCCCCCCeeeecCCCeEEcC-CCCCCCC
Q psy17326        130 RNDCVN--APCQ--QLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEE  171 (264)
Q Consensus       130 ~npC~~--~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~  171 (264)
                      .++|..  +.|.  +.|+..+   ++|+|.|+.||++.. .++|.+.
T Consensus        96 ideC~~~~~~C~~~~~C~n~~---g~y~C~C~~Gy~g~~~~~~C~~~  139 (143)
T 2bou_A           96 VDECSSGQHQCDSSTVCFNTV---GSYSCRCRPGWKPRHGIPNNQKD  139 (143)
T ss_dssp             CCHHHHTCCCCCTTSEEEECS---SCEEEECCSSSCBCTTCCSSBTT
T ss_pred             ccCccCcCCCCCCCCEEECCC---CCEEeeCCCCcccCCCCccCccC
Confidence            456663  5676  6899875   689999999999987 4578764

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=91.96  E-value=0.13  Score=40.21  Aligned_cols=29  Identities=34%  Similarity=0.877  Sum_probs=21.9

Q ss_pred             ccccccCCccc--ceecCCCCCCCeeeecCCCeE
Q psy17326        130 RNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFR  161 (264)
Q Consensus       130 ~npC~~~~Csh--lCl~~p~~~~~~~C~Cp~G~~  161 (264)
                      .++|..+.|.+  .|+..+   ++|+|.|+.||+
T Consensus        48 ideC~~~pC~n~g~C~~~~---~~y~C~C~~G~~   78 (146)
T 1x7a_L           48 GDQCEPNPCLNGGLCKDDI---NSYECWCQVGFE   78 (146)
T ss_dssp             --CCSSCSSCTTCEEEECS---SCEEEECCSSEE
T ss_pred             cCcCCCCCCCCCCEeECCC---CCEEEecCCCCc
Confidence            46676667764  898875   589999999997

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=91.92  E-value=0.072  Score=46.42  Aligned_cols=43  Identities=28%  Similarity=0.804  Sum_probs=29.3

Q ss_pred             Cccccccc--cCCcc--cceecCCCCCCCeeeecCCCeEEcCCCCCCCCCc
Q psy17326        127 PITRNDCV--NAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEET  173 (264)
Q Consensus       127 p~~~npC~--~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~~~~  173 (264)
                      |...++|.  .+.|+  ..|+..+   ++|+|.|+.||... +.+|.+...
T Consensus         2 ~~DiDEC~~~~~~C~~~a~C~Nt~---Gsy~C~C~~Gy~Gn-G~~C~d~d~   48 (285)
T 1gl4_A            2 PLAQQTCANNRHQCSVHAECRDYA---TGFCCRCVANYTGN-GRQCVAEGS   48 (285)
T ss_dssp             -----CHHHHGGGSCTTEEEEECS---SCEEEEECTTEEEC-SSSEEETTC
T ss_pred             CccchhccCCCCCCCCCCEeEcCC---CCeEEEcCCCCCCC-CCcCCCCCC
Confidence            44568897  35887  4799986   68999999999743 557976544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=91.91  E-value=0.41  Score=42.95  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=48.4

Q ss_pred             EeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeC--CEEEEE
Q psy17326         10 ISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFE--DTLYWT   87 (264)
Q Consensus        10 v~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~--d~lYwt   87 (264)
                      +..++..||||++++.++.||++|+...+|.+.++++...-.         ..+++.-   -..|=+|++-.  +.||-+
T Consensus       216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~---------~~~~~~~---~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT---------PLRVLSF---DTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE---------EEEEEEC---SSEEEEEEECTTTCCEEEE
T ss_pred             eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe---------cCEEEeC---CCCCceEEEeCCCCcEEEE
Confidence            345799999999999999999999999999999997532111         0013321   35799999964  576664


Q ss_pred             c
Q psy17326         88 D   88 (264)
Q Consensus        88 D   88 (264)
                      .
T Consensus       284 ~  284 (355)
T 3sre_A          284 C  284 (355)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=91.51  E-value=6.2  Score=33.90  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=59.1

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCCCCe
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQLNR   93 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~~~~   93 (264)
                      .|.++++++..++||.+....+.|...++.......            .+..   -..|.++++.  +.+||.+....+.
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~------------~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG------------TVKT---GKSPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE------------EEEC---SSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE------------EEeC---CCCcceEEECCCCCEEEEEeCCCCE
Confidence            789999999999999999888899999988665443            3433   2457888874  4589999888888


Q ss_pred             EEEEEccCCceeEEE
Q psy17326         94 VLSAHKFRGKNQTVV  108 (264)
Q Consensus        94 i~~~~k~~g~~~~~i  108 (264)
                      |...+..+++....+
T Consensus       140 v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A          140 VSVINTVTKAVINTV  154 (391)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCcEEEEE
Confidence            888887666555444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=91.42  E-value=5.5  Score=33.16  Aligned_cols=74  Identities=5%  Similarity=-0.170  Sum_probs=50.2

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC--CCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEc
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD--GTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTD   88 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld--G~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD   88 (264)
                      ....|.++++++..++||.+....+.|...+++  +...+.  +        ..+..   ...|.++++.  +++||.+.
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--~--------~~~~~---~~~~~~~~~s~dg~~l~~~~  102 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--A--------AESAL---PGSLTHISTDHQGQFVFVGS  102 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--E--------EEEEC---SSCCSEEEECTTSSEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--c--------ccccc---CCCCcEEEEcCCCCEEEEEe
Confidence            456899999999999999999877888887776  433332  0        01221   1367778873  55788888


Q ss_pred             CCCCeEEEEEc
Q psy17326         89 RQLNRVLSAHK   99 (264)
Q Consensus        89 ~~~~~i~~~~k   99 (264)
                      ...+.|...+.
T Consensus       103 ~~~~~i~~~d~  113 (343)
T 1ri6_A          103 YNAGNVSVTRL  113 (343)
T ss_dssp             TTTTEEEEEEE
T ss_pred             cCCCeEEEEEC
Confidence            76665655544

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=90.83  E-value=0.15  Score=39.52  Aligned_cols=35  Identities=29%  Similarity=0.824  Sum_probs=26.8

Q ss_pred             ccccccCCccc--ceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        130 RNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       130 ~npC~~~~Csh--lCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      .++|..+.|.+  .|+..+   ++|+|.|+.||+   +..|..
T Consensus        47 id~C~~~pC~n~g~C~~~~---g~y~C~C~~G~~---G~~C~~   83 (142)
T 2c4f_L           47 GDQCASSPCQNGGSCKDQL---QSYICFCLPAFE---GRNCET   83 (142)
T ss_dssp             CCGGGGCCCCTTCEEEEET---TEEEEECCTTEE---STTSCE
T ss_pred             cCcCcCCCcCCCCEEeCCC---CCEEeeCCCCcc---CCcccc
Confidence            46787777876  898875   589999999997   445653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.77  E-value=3.3  Score=34.75  Aligned_cols=81  Identities=11%  Similarity=0.067  Sum_probs=55.3

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCCCe-EEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCC
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKLDF-IDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQ   90 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~~~-Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~   90 (264)
                      -..|+++++++..++||.++...+. |...+++......    -.  . .+++..   -..|.++++.  +.++|.+...
T Consensus       127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~----~~--~-~~~~~~---~~~~~~~~~spdg~~l~v~~~~  196 (331)
T 3u4y_A          127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF----DT--G-QEFISG---GTRPFNITFTPDGNFAFVANLI  196 (331)
T ss_dssp             CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE----EE--E-EEEECS---SSSEEEEEECTTSSEEEEEETT
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe----ec--C-CccccC---CCCccceEECCCCCEEEEEeCC
Confidence            3568999999998899999988777 8877776433221    00  0 002221   2468888884  4579999988


Q ss_pred             CCeEEEEEccCCce
Q psy17326         91 LNRVLSAHKFRGKN  104 (264)
Q Consensus        91 ~~~i~~~~k~~g~~  104 (264)
                      .+.|...+..+|+.
T Consensus       197 ~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          197 GNSIGILETQNPEN  210 (331)
T ss_dssp             TTEEEEEECSSTTS
T ss_pred             CCeEEEEECCCCcc
Confidence            88888787666654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.12  E-value=7.4  Score=32.47  Aligned_cols=93  Identities=5%  Similarity=-0.062  Sum_probs=60.1

Q ss_pred             eCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce-eEeEEEeecccceeEEeCCccccccee-eeee--CCEEEE
Q psy17326         11 STKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR-QQDTLYWTDRQLNRVVAGSHYLLHPHS-LTIF--EDTLYW   86 (264)
Q Consensus        11 ~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r-~~~~lfwtd~~~~~vl~~~~~l~~P~~-l~v~--~d~lYw   86 (264)
                      ......| ++++++..++||.++...+.|...++++... ..            .+..   -..|.. +++.  +.+||-
T Consensus        37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~------------~~~~---~~~~~~~~~~s~dg~~l~~  100 (331)
T 3u4y_A           37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV------------AIQE---GQSSMADVDITPDDQFAVT  100 (331)
T ss_dssp             ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE------------EEEE---CSSCCCCEEECTTSSEEEE
T ss_pred             EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE------------eccc---CCCCccceEECCCCCEEEE
Confidence            3456667 9999999999999999889999999976553 32            2332   245666 7764  568884


Q ss_pred             EcCCCC--eEEEEEccCCceeEEEeccCCCceeEEE
Q psy17326         87 TDRQLN--RVLSAHKFRGKNQTVVSHLISQPLSIHV  120 (264)
Q Consensus        87 tD~~~~--~i~~~~k~~g~~~~~i~~~~~~p~~i~v  120 (264)
                      +....+  .|...+..+++....+.. ...|.++.+
T Consensus       101 ~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~  135 (331)
T 3u4y_A          101 VTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAI  135 (331)
T ss_dssp             CCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEE
T ss_pred             ecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEE
Confidence            444433  677777766655444432 233455543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.49  E-value=0.77  Score=42.58  Aligned_cols=73  Identities=10%  Similarity=-0.031  Sum_probs=41.7

Q ss_pred             CccEEEEeC------CCCeEEEEeCCCCeEEEEecCCCcee-EeEEEeecccceeEEeC------Ccccccceeeeee-C
Q psy17326         16 WPNGLTLDI------ATRRVYFAESKLDFIDFCNYDGTSRQ-QDTLYWTDRQLNRVVAG------SHYLLHPHSLTIF-E   81 (264)
Q Consensus        16 ~P~gLaiD~------~~~rLYW~D~~~~~Ie~~~ldG~~r~-~~~lfwtd~~~~~vl~~------~~~l~~P~~l~v~-~   81 (264)
                      .|.|+++-.      ..+.+|.+|.. ++|.++.+++.... ....         ++.+      ......|.++++- .
T Consensus       277 Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~r~~~v~~~pd  346 (463)
T 2wg3_C          277 PLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQWQEKP---------LCLGTSGSCRGYFSGHILGFGEDEL  346 (463)
T ss_dssp             CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----CCEEEE---------ECEEETTSSCSCCCSEEEEEEECTT
T ss_pred             cccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCceeeEEE---------eecCCcccccccccCcceEEEECCC
Confidence            678888832      23568888886 77888888754321 1001         2111      1123578888884 5


Q ss_pred             CEEEEEcCC-------CCeEEEEE
Q psy17326         82 DTLYWTDRQ-------LNRVLSAH   98 (264)
Q Consensus        82 d~lYwtD~~-------~~~i~~~~   98 (264)
                      +.||.+|+.       .++|+|+.
T Consensus       347 G~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          347 GEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             CCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             CCEEEEeccCCcccCCCCcEEEec
Confidence            689999984       45666664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=88.66  E-value=10  Score=31.97  Aligned_cols=73  Identities=10%  Similarity=-0.077  Sum_probs=52.4

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeCCEEEEEcCCCCeEE
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVL   95 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lYwtD~~~~~i~   95 (264)
                      ...||+++  .++||-++-..+.+...|.+--....            -+.-   -..++||+..+++||-+|. +..|.
T Consensus        66 fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~------------ti~~---~~~Gwglt~dg~~L~vSdg-s~~l~  127 (243)
T 3mbr_X           66 FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRA------------RFRY---PGEGWALTSDDSHLYMSDG-TAVIR  127 (243)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE------------EEEC---SSCCCEEEECSSCEEEECS-SSEEE
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEE------------EEeC---CCCceEEeeCCCEEEEECC-CCeEE
Confidence            34677776  69999999888999998886443322            2332   1478999989999999995 67788


Q ss_pred             EEEccCCceeE
Q psy17326         96 SAHKFRGKNQT  106 (264)
Q Consensus        96 ~~~k~~g~~~~  106 (264)
                      .++..+.+...
T Consensus       128 ~iDp~t~~~~~  138 (243)
T 3mbr_X          128 KLDPDTLQQVG  138 (243)
T ss_dssp             EECTTTCCEEE
T ss_pred             EEeCCCCeEEE
Confidence            88876655443

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=88.30  E-value=0.27  Score=46.81  Aligned_cols=35  Identities=31%  Similarity=0.903  Sum_probs=24.2

Q ss_pred             cccccCCccc--ceec-CCCCCCCeeeecC-CCeEEcCCCCCCCC
Q psy17326        131 NDCVNAPCQQ--LCLL-SPSSSTGYTCKCI-AGFRVTKDGRCVEE  171 (264)
Q Consensus       131 npC~~~~Csh--lCl~-~p~~~~~~~C~Cp-~G~~L~~~~tC~~~  171 (264)
                      ++|..++|.+  .|.. ..   ++|+|.|+ .||+   +..|+..
T Consensus         3 d~C~~~PC~ngG~C~~~~~---~~y~C~C~~~G~~---G~~Ce~~   41 (553)
T 1q4g_A            3 NPCCYYPCQHQGICVRFGL---DRYQCDCTRTGYS---GPNCTIP   41 (553)
T ss_dssp             CGGGGCCCCTTCEEEEETT---TEEEEECTTSSEE---TTTTCEE
T ss_pred             CcCCCCCCCCCCCcCCCCC---CceEeeCCCCCcC---CCCCCCC
Confidence            4555555553  6776 43   68999999 9997   6678653

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=88.24  E-value=0.092  Score=43.25  Aligned_cols=29  Identities=38%  Similarity=0.982  Sum_probs=0.0

Q ss_pred             ccccccCCccc--ceecCCCCCCCeeeecCCCeE
Q psy17326        130 RNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFR  161 (264)
Q Consensus       130 ~npC~~~~Csh--lCl~~p~~~~~~~C~Cp~G~~  161 (264)
                      .++|..+.|.+  .|+..+   ++|+|.|+.||.
T Consensus        42 ideC~~~pC~ngg~C~n~~---g~y~C~C~~Gf~   72 (195)
T 1nfu_B           42 GDQCETSPCQNQGKCKDGL---GEYTCTCLEGFE   72 (195)
T ss_dssp             ----------------------------------
T ss_pred             CcccCCCCCCCCCEeECCC---CCeeEeCCCCce
Confidence            45666666765  788764   589999999997

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=88.16  E-value=8.8  Score=33.98  Aligned_cols=87  Identities=15%  Similarity=0.035  Sum_probs=60.9

Q ss_pred             EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeC-----Ccccccceeeee---
Q psy17326          8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG-----SHYLLHPHSLTI---   79 (264)
Q Consensus         8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~-----~~~l~~P~~l~v---   79 (264)
                      .-+...-.+|++++-|...+++|..+...++|.+++.+|.....            +...     .....+|.||.+   
T Consensus         6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~------------~~~~~~s~~g~~~~~~sGl~~~~~   73 (334)
T 2p9w_A            6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN------------VVIDGASSNGDGEQQMSGLSLLTH   73 (334)
T ss_dssp             EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE------------ECCTTTCCSSCCSEEEEEEEESSS
T ss_pred             EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE------------EecCCccccCCCcceeeEEEEecc
Confidence            34455667999999999999999999999999999998665544            3111     112347899999   


Q ss_pred             -eCCEEEE-EcC------------CCCeEEEEEcc---CCceeE
Q psy17326         80 -FEDTLYW-TDR------------QLNRVLSAHKF---RGKNQT  106 (264)
Q Consensus        80 -~~d~lYw-tD~------------~~~~i~~~~k~---~g~~~~  106 (264)
                       ..++|+- ++.            ....+.+.+..   +|+...
T Consensus        74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~  117 (334)
T 2p9w_A           74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVW  117 (334)
T ss_dssp             SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE
T ss_pred             CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEE
Confidence             4567776 441            13567777765   455443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=88.00  E-value=12  Score=31.96  Aligned_cols=92  Identities=12%  Similarity=0.104  Sum_probs=59.0

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce-eE--------------eEEEeeccc---------c----eeEEe-
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR-QQ--------------DTLYWTDRQ---------L----NRVVA-   66 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r-~~--------------~~lfwtd~~---------~----~~vl~-   66 (264)
                      ...||+++  .++||-+....+.+...|.+--.. .+              +.||-++-.         .    .++-. 
T Consensus        88 FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A           88 FGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence            34678887  689999988888888887753222 11              345555421         0    11111 


Q ss_pred             -CCcccccceeeeeeCCEEEEEcCCCCeEEEEEccCCceeEEEe
Q psy17326         67 -GSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVS  109 (264)
Q Consensus        67 -~~~~l~~P~~l~v~~d~lYwtD~~~~~i~~~~k~~g~~~~~i~  109 (264)
                       ....+.++..|...+++||-..|.++.|.+++..+|+-...+.
T Consensus       166 ~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          166 AHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             ETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             cCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEE
Confidence             1111233345777789999999999999999998888766664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=87.75  E-value=6.4  Score=33.33  Aligned_cols=72  Identities=10%  Similarity=0.081  Sum_probs=52.7

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeCCEEE-EEcCCCC
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLY-WTDRQLN   92 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lY-wtD~~~~   92 (264)
                      ...+.|||+|+.+++||=+.-....|...+.+|.-.+.            +-..  ....+-||++.++-.| -++...+
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~------------i~l~--g~~D~EGIa~~~~g~~~vs~E~~~   91 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRT------------IPLD--FVKDLETIEYIGDNQFVISDERDY   91 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEE------------EECS--SCSSEEEEEECSTTEEEEEETTTT
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEE------------EecC--CCCChHHeEEeCCCEEEEEECCCC
Confidence            36799999999999999877778899999999775554            3222  2468999998765445 5666666


Q ss_pred             eEEEEEc
Q psy17326         93 RVLSAHK   99 (264)
Q Consensus        93 ~i~~~~k   99 (264)
                      ++.....
T Consensus        92 ~l~~~~v   98 (255)
T 3qqz_A           92 AIYVISL   98 (255)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEc
Confidence            7776554

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=87.63  E-value=0.24  Score=32.42  Aligned_cols=32  Identities=31%  Similarity=0.798  Sum_probs=20.5

Q ss_pred             ccccCCcccceecCC-CCCCCeeeecCCCeEEcCCCCCC
Q psy17326        132 DCVNAPCQQLCLLSP-SSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       132 pC~~~~CshlCl~~p-~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ||.|+|   .|.... ...+++.|.||.||.   +..|+
T Consensus        15 pC~NGG---tC~~~~~~~~~~~~C~C~~Gf~---G~~Ce   47 (58)
T 3ltf_D           15 YCLNDA---HCFAVKIADLPVYSCECAIGFM---GQRCE   47 (58)
T ss_dssp             TSCSSC---EEEEEEETTEEEEEEEECTTEE---SSSSC
T ss_pred             cCCCCC---EEeCCccCCCCCEEeECCCCCc---cCCCc
Confidence            888863   344210 012478999999997   56785

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=87.63  E-value=6.4  Score=33.35  Aligned_cols=76  Identities=16%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCC-ceeEeEEEeecccceeEEeCCc----ccccceeeeee--CCEEEEE
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGT-SRQQDTLYWTDRQLNRVVAGSH----YLLHPHSLTIF--EDTLYWT   87 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~-~r~~~~lfwtd~~~~~vl~~~~----~l~~P~~l~v~--~d~lYwt   87 (264)
                      ..|.++++++..++||.++...+.|...+++.. .... .+        ..+....    ....|.++++.  +.+||.+
T Consensus       187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~-~~--------~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~  257 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT-QL--------GIVKTIPADYTAHNGAAAIRLSHDGHFLYVS  257 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE-EE--------EEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE-Ee--------eeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence            378899999988889999998899988888752 2211 00        0111100    01347778874  5589998


Q ss_pred             cCCCCeEEEEEc
Q psy17326         88 DRQLNRVLSAHK   99 (264)
Q Consensus        88 D~~~~~i~~~~k   99 (264)
                      +...+.|...+.
T Consensus       258 ~~~~~~v~v~~~  269 (347)
T 3hfq_A          258 NRGYNTLAVFAV  269 (347)
T ss_dssp             EETTTEEEEEEE
T ss_pred             eCCCCEEEEEEE
Confidence            876666655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=87.45  E-value=3.9  Score=34.76  Aligned_cols=78  Identities=8%  Similarity=0.051  Sum_probs=52.6

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCc--eeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCC
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTS--RQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQ   90 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~--r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~   90 (264)
                      ..|.++++++..++||.++...+.|...+++...  +...           .+..  .-..|.++++.  +.+||.++..
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~-----------~~~~--~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ-----------QIST--EGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE-----------EEEC--SSSCCCEEEECTTSSEEEEEETT
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE-----------EEec--CCCCcCeEEECCCCCEEEEEEcC
Confidence            4588899999999999999888889888887322  2210           1211  12468888884  5689999887


Q ss_pred             CCeEE--EEEccCCcee
Q psy17326         91 LNRVL--SAHKFRGKNQ  105 (264)
Q Consensus        91 ~~~i~--~~~k~~g~~~  105 (264)
                      .+.|.  +++..+|+-.
T Consensus       307 ~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          307 TDNATLYARDLTSGKLS  323 (347)
T ss_dssp             TTEEEEEEECTTTCCEE
T ss_pred             CCcEEEEEEeCCCCeEE
Confidence            66554  4455455533

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=87.38  E-value=4  Score=35.04  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=56.6

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCCCeEEEEecC-CCceeE--------------eEEEeecccc-------------eeEE
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYD-GTSRQQ--------------DTLYWTDRQL-------------NRVV   65 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld-G~~r~~--------------~~lfwtd~~~-------------~~vl   65 (264)
                      -....||+++  .++||-+....+.+...|.+ ++-.++              +.||-++-..             .++-
T Consensus        95 ~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A           95 NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             CcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            3456677776  56777777666666666643 222221              3455555210             1111


Q ss_pred             e--CCcccccceeeeeeCCEEEEEcCCCCeEEEEEccCCceeEEEe
Q psy17326         66 A--GSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVS  109 (264)
Q Consensus        66 ~--~~~~l~~P~~l~v~~d~lYwtD~~~~~i~~~~k~~g~~~~~i~  109 (264)
                      .  ....+..+..|...+++||-..|.++.|.+++..+|+-...|.
T Consensus       173 V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          173 VKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             CEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             eCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            1  1112234455677789999999999999999998888766654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=87.07  E-value=12  Score=30.96  Aligned_cols=91  Identities=12%  Similarity=-0.061  Sum_probs=59.0

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCc---ccccceeeeee--CCEEEEEc--
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSH---YLLHPHSLTIF--EDTLYWTD--   88 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~---~l~~P~~l~v~--~d~lYwtD--   88 (264)
                      .|.++++++..++||.+....+.|...++.......            .+....   .-..|.++++.  +++||.++  
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  102 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG------------RIDLSTPEERVKSLFGAALSPDGKTLAIYESP  102 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE------------EEECCBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe------------eEEcCCcccccccccceEECCCCCEEEEEecc
Confidence            499999999989999999888899999987544332            232110   01267778874  56899985  


Q ss_pred             ------C---CCCeEEEEEccCCceeEEEeccCCCceeEE
Q psy17326         89 ------R---QLNRVLSAHKFRGKNQTVVSHLISQPLSIH  119 (264)
Q Consensus        89 ------~---~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~  119 (264)
                            +   ..+.|...+..+++....+.. -..|.++.
T Consensus       103 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~  141 (337)
T 1pby_B          103 VRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLA  141 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEE
T ss_pred             cccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeE
Confidence                  2   236677777766655444432 22344554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=86.99  E-value=13  Score=31.53  Aligned_cols=80  Identities=10%  Similarity=0.015  Sum_probs=50.6

Q ss_pred             CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce----e--EeEEEeecccceeEEeCCcccccceeeeee--CCEEEEE
Q psy17326         16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR----Q--QDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWT   87 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r----~--~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwt   87 (264)
                      .|+++++++..++||.++...+.|...+++....    +  ...      +....+... .-..|.++++.  +.+||.+
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~------~~~~~~~~~-~~~~~~~~~~spdg~~l~v~  228 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK------GTPEAFKVA-PGSGPRHLIFNSDGKFAYLI  228 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE------EEEEEEECC-TTCCEEEEEECTTSSEEEEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec------ccccceecC-CCCCCeEEEEcCCCCEEEEE
Confidence            3578999999999999999889998888875432    1  000      000011111 13467888874  4489998


Q ss_pred             cCCCCeEEEEEccCC
Q psy17326         88 DRQLNRVLSAHKFRG  102 (264)
Q Consensus        88 D~~~~~i~~~~k~~g  102 (264)
                      +...+.|...+..+|
T Consensus       229 ~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          229 NEIGGTVIAFRYADG  243 (361)
T ss_dssp             ETTTCEEEEEEEETT
T ss_pred             cCCCCeEEEEEecCC
Confidence            877676666554443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=86.98  E-value=14  Score=31.63  Aligned_cols=90  Identities=13%  Similarity=0.159  Sum_probs=62.8

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCCC
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQL   91 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~~   91 (264)
                      -..|.++++++..++||.+....+.|...++.......            .+...   ..+.++++.  +++||.+....
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~------------~~~~~---~~v~~~~~spdg~~l~~~~~~~   95 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA------------TVPAG---SSPQGVAVSPDGKQVYVTNMAS   95 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE------------EEECS---SSEEEEEECTTSSEEEEEETTT
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE------------EEECC---CCccceEECCCCCEEEEEECCC
Confidence            34689999999999999998888899998886544433            34332   267778874  66899998877


Q ss_pred             CeEEEEEccCCceeEEEeccCCCceeEE
Q psy17326         92 NRVLSAHKFRGKNQTVVSHLISQPLSIH  119 (264)
Q Consensus        92 ~~i~~~~k~~g~~~~~i~~~~~~p~~i~  119 (264)
                      +.|...+..+++....+.. ...+.++.
T Consensus        96 ~~v~v~d~~~~~~~~~~~~-~~~~~~~~  122 (391)
T 1l0q_A           96 STLSVIDTTSNTVAGTVKT-GKSPLGLA  122 (391)
T ss_dssp             TEEEEEETTTTEEEEEEEC-SSSEEEEE
T ss_pred             CEEEEEECCCCeEEEEEeC-CCCcceEE
Confidence            8888888777765544432 22344444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=86.71  E-value=3  Score=36.99  Aligned_cols=71  Identities=13%  Similarity=-0.108  Sum_probs=53.5

Q ss_pred             CccEEEEeCCCCeEEEEeCCC-CeEEEEecCCCceeEeEEEeecccceeEEeCC---cccccceeeeee--CCEEEEEcC
Q psy17326         16 WPNGLTLDIATRRVYFAESKL-DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS---HYLLHPHSLTIF--EDTLYWTDR   89 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~-~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~---~~l~~P~~l~v~--~d~lYwtD~   89 (264)
                      .|+++++|. .+++|-+|+.. ..|.+++.||+....            .....   ....-+.||++.  ++.|+-.+.
T Consensus       138 ~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~------------~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          138 GVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVST------------FAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             EEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEE------------EEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             CCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEee------------eeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence            489999997 68999999999 999999999996553            22111   112346699997  668888887


Q ss_pred             CCCeEEEEEcc
Q psy17326         90 QLNRVLSAHKF  100 (264)
Q Consensus        90 ~~~~i~~~~k~  100 (264)
                       .+.+.+++..
T Consensus       205 -~g~L~~fD~~  214 (334)
T 2p9w_A          205 -PRALTAFDVS  214 (334)
T ss_dssp             -SSSEEEEECS
T ss_pred             -CCeEEEEcCC
Confidence             7788888763

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=86.43  E-value=0.32  Score=46.60  Aligned_cols=35  Identities=31%  Similarity=0.886  Sum_probs=22.9

Q ss_pred             ccccCCccc--ceecCCCCCCCeeeecC-CCeEEcCCCCCCCC
Q psy17326        132 DCVNAPCQQ--LCLLSPSSSTGYTCKCI-AGFRVTKDGRCVEE  171 (264)
Q Consensus       132 pC~~~~Csh--lCl~~p~~~~~~~C~Cp-~G~~L~~~~tC~~~  171 (264)
                      +|..++|.+  .|....  .++|+|.|+ .||.   +..|+.+
T Consensus         3 ~C~s~PC~ngG~C~~~~--~~~y~C~C~~~G~~---G~~Ce~~   40 (587)
T 3nt1_A            3 PCCSNPCQNRGECMSTG--FDQYKCDCTRTGFY---GENCTTP   40 (587)
T ss_dssp             TTTTCCCCTTCEEEEEE--TTEEEEECTTSSEE---TTTTCEE
T ss_pred             CCCCCCCCCCCEeeCCC--CCCeEEecCCCCcc---CCCCCCc
Confidence            444444442  677432  257999999 9996   6678754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=86.21  E-value=4.8  Score=36.32  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=51.7

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCC-----CceeEeEEEeecccceeEEeCCcccccceeeee-eCCEEEEEc
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDG-----TSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTLYWTD   88 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG-----~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~lYwtD   88 (264)
                      ....++++|..++.||+++.....|.+-+-++     .+.++            +.... .+..|-+|++ .+++||.+.
T Consensus       275 s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~------------l~~d~-~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          275 NDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDV------------VYTSS-RFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             CCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEE------------EEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred             CCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEE------------EEECC-CccccCeEEECCCCeEEEEE
Confidence            34457899988999999999999999999988     35565            66665 7899999998 577899887


Q ss_pred             CCC
Q psy17326         89 RQL   91 (264)
Q Consensus        89 ~~~   91 (264)
                      .+.
T Consensus       342 n~l  344 (381)
T 3q6k_A          342 NGF  344 (381)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=86.11  E-value=11  Score=33.20  Aligned_cols=90  Identities=12%  Similarity=0.072  Sum_probs=60.7

Q ss_pred             ccE---EEEeCCCCeEEEEeCC---------CCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CC
Q psy17326         17 PNG---LTLDIATRRVYFAESK---------LDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--ED   82 (264)
Q Consensus        17 P~g---LaiD~~~~rLYW~D~~---------~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d   82 (264)
                      |.|   ++++...++||-+...         .+.|..+|........            -+.-   -..|.+|++.  +.
T Consensus       266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~------------~i~~---g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS------------QISL---GHDVDAISVAQDGG  330 (373)
T ss_pred             cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE------------EEEC---CCCcCeEEECCCCC
Confidence            666   8999999999987542         3578888886544322            1221   1369999995  44


Q ss_pred             -EEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEe
Q psy17326         83 -TLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVH  121 (264)
Q Consensus        83 -~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~  121 (264)
                       .+|-+.+..+.|..++..+++....+..--..|.+|.++
T Consensus       331 ~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~~~  370 (373)
T 2mad_H          331 PDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             eEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEEEc
Confidence             677777777889888987887766543223457777765

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=85.02  E-value=0.36  Score=38.75  Aligned_cols=34  Identities=18%  Similarity=0.431  Sum_probs=24.1

Q ss_pred             cccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ..+||.++    .|+..+   ++|+|.|+.||++....+|.
T Consensus         9 ~~~pC~ng----~C~~~~---g~~~C~C~~G~~g~~~~~C~   42 (186)
T 1z1y_A            9 VDTICXNG----QLVQMS---NHFXCMCNEGLVHLSENTCE   42 (186)
T ss_dssp             TTCCCBTE----EEEECS---SCEEEEECTTEEEEETTEEE
T ss_pred             CCCCCCCC----EeECCC---CCeEeECCCCCccCCCCccC
Confidence            45778753    677765   58999999999986333453

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=84.91  E-value=0.44  Score=41.06  Aligned_cols=32  Identities=28%  Similarity=0.823  Sum_probs=26.3

Q ss_pred             CcccceecCCCCCCCeeeecCCCeEEcCC-CCCCCC
Q psy17326        137 PCQQLCLLSPSSSTGYTCKCIAGFRVTKD-GRCVEE  171 (264)
Q Consensus       137 ~CshlCl~~p~~~~~~~C~Cp~G~~L~~~-~tC~~~  171 (264)
                      .|+|.|....   +++.|.|..||.|..+ .+|...
T Consensus       132 ~c~~~C~n~~---g~~~csC~~Gy~L~~d~~~C~~~  164 (286)
T 1nt0_A          132 PCDHYCHXYL---GGYYCSCRVGYILHQNKHTCSAL  164 (286)
T ss_dssp             CCSSEEEEET---TEEEEECCTTEEECTTSSCEEEC
T ss_pred             cCCCcccccc---CceEeecCCCceeccCCCCcccc
Confidence            6999999875   5899999999999884 567643

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=84.85  E-value=0.18  Score=38.64  Aligned_cols=29  Identities=38%  Similarity=0.982  Sum_probs=0.0

Q ss_pred             ccccccCCccc--ceecCCCCCCCeeeecCCCeE
Q psy17326        130 RNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFR  161 (264)
Q Consensus       130 ~npC~~~~Csh--lCl~~p~~~~~~~C~Cp~G~~  161 (264)
                      .++|..+.|.+  .|+..+   ++|+|.|+.||.
T Consensus        42 ~d~C~~~pC~n~g~C~~~~---~~y~C~C~~G~~   72 (134)
T 2vh0_B           42 GDQCETSPCQNQGKCKDGL---GEYTCTCLEGFE   72 (134)
T ss_dssp             ----------------------------------
T ss_pred             cCcCCCCCCCCcCCcccCC---CCEEeeCCCCcc
Confidence            45666666665  788764   589999999997

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=84.44  E-value=9.3  Score=32.56  Aligned_cols=76  Identities=11%  Similarity=-0.006  Sum_probs=51.9

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCC---CCeEEEEecCCC--ceeEeEEEeecccceeEEeCCcccccceeeeeeCCEEEEE
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESK---LDFIDFCNYDGT--SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWT   87 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~---~~~Ie~~~ldG~--~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lYwt   87 (264)
                      ....|.+|++++..++||-++..   .+.|...+++..  ..+.            +-.....-..|..+++-+++||.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~------------~~~~~~~~~~p~~~~~dg~~l~~~  115 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL------------LNTQKTMGADPCYLTTNGKNIVTA  115 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE------------EEEEECSSSCEEEEEECSSEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE------------eeEeccCCCCcEEEEECCCEEEEE
Confidence            57789999999999999999983   467766666543  2222            111111135788888877789999


Q ss_pred             cCCCCeEEEEEcc
Q psy17326         88 DRQLNRVLSAHKF  100 (264)
Q Consensus        88 D~~~~~i~~~~k~  100 (264)
                      +...+.|...+..
T Consensus       116 ~~~~~~v~~~~~~  128 (361)
T 3scy_A          116 NYSGGSITVFPIG  128 (361)
T ss_dssp             ETTTTEEEEEEBC
T ss_pred             ECCCCEEEEEEeC
Confidence            8877777666643

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=83.65  E-value=0.74  Score=32.63  Aligned_cols=36  Identities=22%  Similarity=0.634  Sum_probs=23.2

Q ss_pred             cccccCCcc--cceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        131 NDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       131 npC~~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      ++|..+.|.  ..|+..+. .++|+|.||.||.   +..|..
T Consensus        49 ~~C~~~pC~ngg~C~~~~~-~~~~~C~C~~G~~---G~~Ce~   86 (91)
T 1tpg_A           49 KSCSEPRCFNGGTCQQALY-FSDFVCQCPEGFA---GKSCEI   86 (91)
T ss_dssp             EECSSCCSCTTCEEEEESS-SSCEEEECCTTCB---SSSCCB
T ss_pred             CcccCCCCCCCCEeecCCC-CCCeEeECCCCCc---CCcCCc
Confidence            344444443  26887541 2589999999995   567863

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=83.47  E-value=0.84  Score=34.88  Aligned_cols=32  Identities=25%  Similarity=0.711  Sum_probs=24.9

Q ss_pred             ccccccC---Ccc--cceecCCCCCCCeeeecCCCeEEcC
Q psy17326        130 RNDCVNA---PCQ--QLCLLSPSSSTGYTCKCIAGFRVTK  164 (264)
Q Consensus       130 ~npC~~~---~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~  164 (264)
                      .++|...   .|.  +.|+..+   ++|+|.|+.||++..
T Consensus        44 ideC~~~~~~~C~~~~~C~n~~---g~y~C~C~~Gy~g~~   80 (143)
T 2bou_A           44 INECATLSKVSCGKFSDCWNTE---GSYDCVCSPGYEPVS   80 (143)
T ss_dssp             CCGGGC----CCCTTEEEEECS---SCEEEEECTTEEETT
T ss_pred             cccccCCCCCCCCCCCEEEcCC---CCeEeECCCCcccCc
Confidence            4677653   676  6899875   589999999999864

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=83.25  E-value=0.86  Score=34.56  Aligned_cols=30  Identities=23%  Similarity=0.919  Sum_probs=21.1

Q ss_pred             ccccc--cCCccc--ceecCCCCCCCeeeecCCCeEE
Q psy17326        130 RNDCV--NAPCQQ--LCLLSPSSSTGYTCKCIAGFRV  162 (264)
Q Consensus       130 ~npC~--~~~Csh--lCl~~p~~~~~~~C~Cp~G~~L  162 (264)
                      .++|.  .+.|.+  .|+..+   ++|+|.|+.||..
T Consensus         5 ideC~~~~~~C~~~g~C~~~~---g~~~C~C~~Gy~G   38 (135)
T 2vj3_A            5 VDECSLGANPCEHAGKCINTL---GSFECQCLQGYTG   38 (135)
T ss_dssp             CCTTTSSSCSSSTTCEEEECS---SSEEEECCTTEES
T ss_pred             cccccCCCCCCCCCCEeECCC---CCEEEECCCCCcC
Confidence            35565  346654  788764   5799999999974

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=83.20  E-value=15  Score=31.93  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=57.9

Q ss_pred             ccE---EEEeCCCCeEEEEeC----------CCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eC
Q psy17326         17 PNG---LTLDIATRRVYFAES----------KLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FE   81 (264)
Q Consensus        17 P~g---LaiD~~~~rLYW~D~----------~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~   81 (264)
                      |.|   ++++...++||=+..          ....|..+|+.......            -+...   . |.+|++  -+
T Consensus       253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~------------~i~~~---~-p~~ia~spdg  316 (361)
T 2oiz_A          253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA------------RIPGR---D-ALSMTIDQQR  316 (361)
T ss_dssp             ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE------------EEECT---T-CCEEEEETTT
T ss_pred             cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE------------EEecC---C-eeEEEECCCC
Confidence            555   999999999997753          13478888876443322            23321   2 999998  46


Q ss_pred             CEEEEEcCCCCeEEEEEccCC--ceeEEEeccCCCceeEEEe
Q psy17326         82 DTLYWTDRQLNRVLSAHKFRG--KNQTVVSHLISQPLSIHVH  121 (264)
Q Consensus        82 d~lYwtD~~~~~i~~~~k~~g--~~~~~i~~~~~~p~~i~v~  121 (264)
                      .+||-+.+  +.|..++..+|  +....+...-..|.+|.+.
T Consensus       317 ~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~  356 (361)
T 2oiz_A          317 NLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH  356 (361)
T ss_dssp             TEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred             CEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence            69998876  77888888777  6665553334567777653

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=82.51  E-value=0.95  Score=35.15  Aligned_cols=32  Identities=34%  Similarity=0.846  Sum_probs=21.9

Q ss_pred             cccCCcc--cceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        133 CVNAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       133 C~~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      |....|+  ..|+...   ++|+|.|+.||.   +..|+.
T Consensus       122 c~~~~C~~~g~C~~~~---~~~~c~C~~g~~---G~~Ce~  155 (162)
T 1g1s_A          122 CQDMSCSKQGECLETI---GNYTCSCYPGFY---GPECEY  155 (162)
T ss_dssp             CCTTGGGGSEEEEECS---SSEEEEECTTEE---STTSCE
T ss_pred             CcCCCCCCCCEEecCC---CCceEeCCCCCc---Cccccc
Confidence            3334443  3688764   589999999998   456754

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=81.12  E-value=0.84  Score=31.81  Aligned_cols=32  Identities=22%  Similarity=0.660  Sum_probs=20.0

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      .+.|.++    .|+.... .+.+.|.|+.||.   +.+|.
T Consensus        45 ~~yClnG----~C~~i~~-~~~~~C~C~~GYt---G~RCE   76 (79)
T 1xdt_R           45 KDFCIHG----ECKYVKE-LRAPSCICHPGYH---GERCH   76 (79)
T ss_dssp             TTCCSSE----EECCBGG-GTBCCEEECTTEE---STTCC
T ss_pred             cCcCCCC----EeeeecC-CCCeEEEcCCCcc---ccccc
Confidence            4566654    4643221 1468999999997   45674

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=80.98  E-value=0.94  Score=34.41  Aligned_cols=29  Identities=31%  Similarity=0.915  Sum_probs=17.1

Q ss_pred             ccccCCcc--cceecCCCCCCCeeeecCCCeE
Q psy17326        132 DCVNAPCQ--QLCLLSPSSSTGYTCKCIAGFR  161 (264)
Q Consensus       132 pC~~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~  161 (264)
                      +|..+.|.  ..|+.... .++|+|.|+.||+
T Consensus         2 ~C~~~pC~~~g~C~~~~~-~g~~~C~C~~G~~   32 (143)
T 4d90_A            2 ICDPNPCENGGICLPGLA-DGSFSCECPDGFT   32 (143)
T ss_dssp             -CCSCCCGGGCEEEC------CCEEECCTTCC
T ss_pred             cCCCCcCCCCCEeeCCCC-CCCEEeECCCCCC
Confidence            34444454  37887542 1479999999996

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=80.98  E-value=0.74  Score=39.26  Aligned_cols=32  Identities=31%  Similarity=0.745  Sum_probs=26.1

Q ss_pred             CcccceecCCCCCCCeeeecCCCeEEcCC-CCCCCC
Q psy17326        137 PCQQLCLLSPSSSTGYTCKCIAGFRVTKD-GRCVEE  171 (264)
Q Consensus       137 ~CshlCl~~p~~~~~~~C~Cp~G~~L~~~-~tC~~~  171 (264)
                      +|+|.|...+   +++.|.|+.||.|..+ .+|...
T Consensus       133 ~c~~~C~n~~---g~~~C~C~~Gy~l~~d~~~C~~~  165 (278)
T 3dem_A          133 SCDHYCHNYI---GGYYCSCRFGYILHTDNRTCRVE  165 (278)
T ss_dssp             CCSSEEEEET---TEEEEECCTTCEECTTSSCEECC
T ss_pred             cCCcCcCCcc---CCcEEEeCCcceeccCCCCCccc
Confidence            8999999875   5899999999999874 467543

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=80.93  E-value=0.61  Score=40.55  Aligned_cols=28  Identities=39%  Similarity=1.007  Sum_probs=19.9

Q ss_pred             cccccCCccc--ceecCCCCCCCeeeecCCCeE
Q psy17326        131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFR  161 (264)
Q Consensus       131 npC~~~~Csh--lCl~~p~~~~~~~C~Cp~G~~  161 (264)
                      ++|..+.|.+  .|...+   ++|+|.|+.||.
T Consensus         6 ~~C~~~pC~~~g~C~~~~---~~~~C~C~~g~~   35 (317)
T 3h5c_B            6 SPCISQPCLHNGSCQDSI---WGYTCTCSPGYE   35 (317)
T ss_dssp             CCTTSCCCTTTCCCCCCS---SSCCCCCSSSCC
T ss_pred             CcCCCCCCCCCCEeECCC---CCeEEECCCCCc
Confidence            4555555543  577654   589999999996

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=80.87  E-value=1  Score=43.49  Aligned_cols=37  Identities=27%  Similarity=0.743  Sum_probs=25.2

Q ss_pred             ccccccCCccc--ceecCCCCCCCeee-ecCCCeEEcCCCCCC
Q psy17326        130 RNDCVNAPCQQ--LCLLSPSSSTGYTC-KCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~~~Csh--lCl~~p~~~~~~~C-~Cp~G~~L~~~~tC~  169 (264)
                      .++|..+.|.+  .|+..+.  ++|+| .||.||+.. +.+|+
T Consensus         3 IDeC~~nPC~~gg~C~n~~~--Gsy~C~~C~~GytGd-g~~Ce   42 (634)
T 1yo8_A            3 PDGCLSNPCFPGAQCSSFPD--GSWSCGFCPVGFLGN-GTHCE   42 (634)
T ss_dssp             -CGGGGCCSCTTCCEEECTT--SCEEECCCCTTBCSC-SSSCC
T ss_pred             ccccCCCCCCCCCEEecCCC--CCeECCcCCCccCCC-CCCcc
Confidence            36777777764  8998752  24999 999999731 24554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	1e-24
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	9e-21
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	6e-06
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	9e-06
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	1e-05
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	1e-05
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	2e-05
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	2e-05
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-05
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	3e-05
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	5e-05
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	1e-04
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	4e-04
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.001
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	0.002
d1dx5i1	43	g.3.11.1 (I:345-387) Thrombomodulin, different EGF	0.002

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 1e-24
 Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           ++     ++++  I WPNG+TLD+ + R+Y+ +SKL  I   + +G +R+          
Sbjct: 150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 200

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
              ++     L HP SL +FED ++WTD     + SA++  G +  +++  +  P  + +
Sbjct: 201 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257

Query: 121 HHPSLQP 127
            H   QP
Sbjct: 258 FHNLTQP 264

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.5 bits (213), Expect = 9e-21
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 1   MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
           MD ++R  +    +  PNGLT D  + ++ + ++     +  N     R           
Sbjct: 153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----------- 201

Query: 61  LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHL-ISQPLSIH 119
             R V     L +P ++T +   LY+TD + N V++      K          ++   I 
Sbjct: 202 --RKVL--EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT 257

Query: 120 VHHPS 124
           +    
Sbjct: 258 IALSQ 262

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 6e-06
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)

Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEE 171
                  C   C         + C C AG+ + ++ R C E+
Sbjct: 7   APGEAPTCDHHCHNHLGG---FYCSCRAGYVLHRNKRTCSEQ 45

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 9e-06
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 135 NAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGR-CV 169
           N  CQ LCL +P     S  +TC C  G  + +D R C+
Sbjct: 11  NGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 6/44 (13%)

Query: 132 DCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
           +C   N  C   CL          C C  G+++  D   C    
Sbjct: 1   NCSLDNGGCTHYCLEEVGW---RRCSCAPGYKLGDDLLQCHPAV 41

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 1e-05
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEET 173
           N  C+Q C     +    +C+C  G+ +  DG  C     
Sbjct: 6   NGGCEQYCSDHTGTK--RSCRCHEGYSLLADGVSCTPTVE 43

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
           N  C Q C    S      C C  G+ +  D + CV  E
Sbjct: 5   NGGCDQFCREERSE---VRCSCAHGYVLGDDSKSCVSTE 40

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
           N  C Q C    +S     C C  G+ +  +G+ C+   
Sbjct: 7   NGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTG 42

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
           N  C+Q C  S  +     C C  G+R+ ++ + C    
Sbjct: 7   NGRCEQFCKNSADNK--VVCSCTEGYRLAENQKSCEPAV 43

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 131 NDC-VNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
           ++C     C QLC+        Y C+C  GF++    +
Sbjct: 2   DECQDPDTCSQLCVNLEGG---YKCQCEEGFQLDPHTK 36

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 5e-05
 Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)

Query: 132 DCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
           D V+ PC   C         Y C C   + +  D +
Sbjct: 5   DFVDVPCSHFCNNFIGG---YFCSCPPEYFLHDDMK 37

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)

Query: 131 NDC--VNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC 168
           N+C   N  C  +C         Y C C  GF++    RC
Sbjct: 3   NECLDNNGGCSHVCNDLKIG---YECLCPDGFQLVAQRRC 39

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 3/37 (8%)

Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
           +   + PC   C         Y C C  G+ + ++  
Sbjct: 7   SLGDSVPCDHYCHNYLGG---YYCSCRVGYILHQNKH 40

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.001
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEE 171
              CQ LC         Y C C  G+ + +D   C  E
Sbjct: 19  QPQCQHLCHNYVGG---YFCSCRPGYELQEDRHSCQAE 53

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVE 170
           N+C+         C+ +P S   Y C C   F +      CV+
Sbjct: 4   NECLDPTTCISGNCVNTPGS---YICDCPPDFELNPTRVGCVD 43

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 0.002
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 133 CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDG--RC 168
           C  A C+  C   P   T Y C C  GF        RC
Sbjct: 7   CFRANCEYQCQ--PLDQTSYLCVCAEGFAPIPHEPHRC 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.93
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.77
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.72
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	99.04
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.8
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.75
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.75
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	98.72
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	98.69
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	98.68
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.68
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.66
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	98.59
d1szba2	45	Mannose-binding protein associated serine protease	98.47
d1nt0a3	45	Mannose-binding protein associated serine protease	98.41
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.22
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.12
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.77
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.62
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.58
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.51
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.51
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.77
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	96.71
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	96.65
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	96.65
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	96.63
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	96.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.46
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	96.39
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	96.37
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	96.26
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	96.23
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	95.78
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	95.78
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	95.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.47
d1dx5i2	35	Thrombomodulin, different EGF-like domains {Human	95.35
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	95.34
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	95.27
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	95.08
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	94.77
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	94.26
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	94.08
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	93.14
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	93.09
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	91.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.51
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	91.02
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	90.97
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	88.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	85.0
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	84.78
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	84.6

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-25  Score=193.49  Aligned_cols=117  Identities=29%  Similarity=0.607  Sum_probs=110.4

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+++++|+..++.+|+|||+|+.+++|||+|...+.|+++++||+++++            ++.....+.+|++|+++
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~------------~~~~~~~~~~p~~lav~  217 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILEDEKRLAHPFSLAVF  217 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EEECTTTTSSEEEEEEE
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEE------------EEeCCCcccccEEEEEE
Confidence            899999999998999999999999999999999999999999999999988            77765567899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCcc
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPIT  129 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~  129 (264)
                      +++|||+||..++|++++|.+|++.+.+..+...|++|+|||+.+||.+
T Consensus       218 ~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~~QP~g  266 (266)
T d1ijqa1         218 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRG  266 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCC
T ss_pred             CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECCccCCCC
Confidence            9999999999999999999999999999888999999999999999954

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.6e-23  Score=176.64  Aligned_cols=108  Identities=23%  Similarity=0.378  Sum_probs=100.4

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF   80 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~   80 (264)
                      |||+++++|+..++.+|+|||+|+.+++|||+|...++|++++++|.++++            ++.+   +.+|++|+++
T Consensus       153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~------------v~~~---~~~P~~lav~  217 (263)
T d1npea_         153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK------------VLEG---LQYPFAVTSY  217 (263)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE------------EEEC---CCSEEEEEEE
T ss_pred             CCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEE------------EECC---CCCcEEEEEE
Confidence            799999999999999999999999999999999999999999999999998            7764   6899999999


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeEEEe-ccCCCceeEEEecc
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVS-HLISQPLSIHVHHP  123 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~-~~~~~p~~i~v~~~  123 (264)
                      +++|||+||..++|.+++|.+|+..+++. ....+|+||+|+|+
T Consensus       218 ~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            99999999999999999999998877665 46788999999986

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=4e-17  Score=140.78  Aligned_cols=106  Identities=25%  Similarity=0.534  Sum_probs=89.9

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-   79 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-   79 (264)
                      |||+++++++..++..|.|||||+.+++|||+|...++|+++++||+.+++            ++..  .+.+|.+|++ 
T Consensus        65 l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~------------l~~~--~l~~p~~l~vd  130 (263)
T d1npea_          65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV------------LFDT--GLVNPRGIVTD  130 (263)
T ss_dssp             SSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------EECS--SCSSEEEEEEE
T ss_pred             cccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE------------Eecc--cccCCcEEEEe
Confidence            689999999998999999999999999999999999999999999999987            6665  4789999999 


Q ss_pred             -eCCEEEEEcCCCC--eEEEEEccCCceeEEE-eccCCCceeEEEe
Q psy17326         80 -FEDTLYWTDRQLN--RVLSAHKFRGKNQTVV-SHLISQPLSIHVH  121 (264)
Q Consensus        80 -~~d~lYwtD~~~~--~i~~~~k~~g~~~~~i-~~~~~~p~~i~v~  121 (264)
                       ..++|||+++...  +|++++. +|.+++.+ ..++..|.+|++.
T Consensus       131 p~~g~ly~t~~~~~~~~I~r~~~-dG~~~~~i~~~~~~~P~glaiD  175 (263)
T d1npea_         131 PVRGNLYWTDWNRDNPKIETSHM-DGTNRRILAQDNLGLPNGLTFD  175 (263)
T ss_dssp             TTTTEEEEEECCSSSCEEEEEET-TSCCCEEEECTTCSCEEEEEEE
T ss_pred             cccCcEEEeecCCCCcEEEEecC-CCCCceeeeeecccccceEEEe
Confidence             6899999998754  5999986 56655544 3466777777765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-15  Score=130.45  Aligned_cols=169  Identities=20%  Similarity=0.336  Sum_probs=120.3

Q ss_pred             CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCc----eeEeEEEeecccceeEEeCCccccccee
Q psy17326          1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTS----RQQDTLYWTDRQLNRVVAGSHYLLHPHS   76 (264)
Q Consensus         1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~----r~~~~lfwtd~~~~~vl~~~~~l~~P~~   76 (264)
                      |||++...|+. ++..|.||++|+.+++|||+|...+.|.++++||.+    +++            ++..  .+.+|.+
T Consensus        17 l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~------------~~~~--~~~~p~g   81 (266)
T d1ijqa1          17 LDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------VISR--DIQAPDG   81 (266)
T ss_dssp             TTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE------------EECS--SCSCCCE
T ss_pred             CCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE------------EEeC--CCCCcce
Confidence            68888888876 788999999999999999999999999999999864    333            4544  4789999


Q ss_pred             eee--eCCEEEEEcCCCCeEEEEEccCCcee-EEEeccCCCceeEEEecccCCCccccccccCCcccceecCCCCCCCee
Q psy17326         77 LTI--FEDTLYWTDRQLNRVLSAHKFRGKNQ-TVVSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYT  153 (264)
Q Consensus        77 l~v--~~d~lYwtD~~~~~i~~~~k~~g~~~-~~i~~~~~~p~~i~v~~~~~qp~~~npC~~~~CshlCl~~p~~~~~~~  153 (264)
                      ||+  .++.|||+|...++|..++. +|... .++......|.+|++...                          .   
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~-~g~~~~~~~~~~~~~P~~l~vd~~--------------------------~---  131 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADT-KGVKRKTLFRENGSKPRAIVVDPV--------------------------H---  131 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEET-TSSSEEEEEECTTCCEEEEEEETT--------------------------T---
T ss_pred             EEEeeccceEEEEecCCCEEEeEec-CCceEEEEEcCCCCCcceEEEEcc--------------------------c---
Confidence            999  59999999999999998886 45544 445556677887766410                          1   


Q ss_pred             eecCCCeEEcCCCCCCCCCccEEEEEe---CCeEEEEEcCCCCCCCcceeEeeeCceeEEeeeCCCCCCCceEEEecCCC
Q psy17326        154 CKCIAGFRVTKDGRCVEEETPVLLVMK---GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVE  230 (264)
Q Consensus       154 C~Cp~G~~L~~~~tC~~~~~~~ll~~~---~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (264)
                                          .+|.++.   ...|.++.++                        -   +....+-..++.
T Consensus       132 --------------------g~ly~~~~~~~~~I~r~~~d------------------------G---s~~~~l~~~~~~  164 (266)
T d1ijqa1         132 --------------------GFMYWTDWGTPAKIKKGGLN------------------------G---VDIYSLVTENIQ  164 (266)
T ss_dssp             --------------------TEEEEEECSSSCEEEEEETT------------------------S---CCEEEEECSSCS
T ss_pred             --------------------CeEEEeccCCCcceeEeccC------------------------C---Cceecccccccc
Confidence                                1222322   2357776442                        1   112223335677


Q ss_pred             CcEEEEEECCCCEEEEEeCCC-eee--ccCCCCC
Q psy17326        231 NGLQVEFDKKAAMLYWLEGTK-KAN--EEDGGNE  261 (264)
Q Consensus       231 ~~~~id~D~~~~~iYW~D~~~-~~~--~~~~~~~  261 (264)
                      .+.+|++|+.+++|||+|... +|.  .+||+|.
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence            889999999999999999754 555  4778763

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.2e-11  Score=75.47  Aligned_cols=39  Identities=33%  Similarity=0.768  Sum_probs=31.4

Q ss_pred             cccc--cCCcccceecCCC---CCCCeeeecCCCeEEcC-CCCCC
Q psy17326        131 NDCV--NAPCQQLCLLSPS---SSTGYTCKCIAGFRVTK-DGRCV  169 (264)
Q Consensus       131 npC~--~~~CshlCl~~p~---~~~~~~C~Cp~G~~L~~-~~tC~  169 (264)
                      +.|.  |++|+|+|++.|.   ..++|+|+||+||+|.+ +++|+
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL   49 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence            4555  4699999999873   24689999999999999 46896

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=8.6e-11  Score=71.25  Aligned_cols=38  Identities=34%  Similarity=0.878  Sum_probs=32.3

Q ss_pred             cccccc--cCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        129 TRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       129 ~~npC~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      +.|+|.  +++|+|+|+..|   ++|+|+||.||+|..+++|.
T Consensus         1 G~neC~~~nggC~h~C~n~~---g~~~C~C~~Gy~L~d~~tC~   40 (40)
T d3bpse1           1 GTNECLDNNGGCSHVCNDLK---IGYECLCPDGFQLVAQRRCE   40 (40)
T ss_dssp             CSCGGGTGGGGCSSEEEECS---SSEEEECCTTCCEETTTEEC
T ss_pred             CcccCCCCCCCCcCEEEcCC---CCEEEECCCCCEECCCCcCC
Confidence            468997  469999999987   68999999999997667784

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=7.9e-08  Score=80.52  Aligned_cols=100  Identities=22%  Similarity=0.290  Sum_probs=70.5

Q ss_pred             CcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-eCCE
Q psy17326          5 SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDT   83 (264)
Q Consensus         5 ~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~   83 (264)
                      .+.++-...+..|+||++|. .++|||+|.....+...+.+|.....            ....  .+..|.+|++ -++.
T Consensus        88 ~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~------------~~~~--~~~~p~~i~~~~~g~  152 (260)
T d1rwia_          88 NQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTV------------LPFT--GLNDPDGVAVDNSGN  152 (260)
T ss_dssp             CCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEE------------CCCC--SCCSCCEEEECTTCC
T ss_pred             ceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeee------------eeec--ccCCcceeeecCCCC
Confidence            33333334678999999998 56899999999999999999887664            3222  4678999998 4568


Q ss_pred             EEEEcCCCCeEEEEEccCCceeEEE-eccCCCceeEEE
Q psy17326         84 LYWTDRQLNRVLSAHKFRGKNQTVV-SHLISQPLSIHV  120 (264)
Q Consensus        84 lYwtD~~~~~i~~~~k~~g~~~~~i-~~~~~~p~~i~v  120 (264)
                      +|++|+....|.+.+..+ .....+ ...+..|.+|++
T Consensus       153 ~~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~p~gi~~  189 (260)
T d1rwia_         153 VYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAV  189 (260)
T ss_dssp             EEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEE
T ss_pred             Eeeecccccccccccccc-ceeeeeeccccCCCcccee
Confidence            999999999898887643 333222 223444555544

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2e-09  Score=65.72  Aligned_cols=37  Identities=27%  Similarity=0.724  Sum_probs=31.1

Q ss_pred             cccc---cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        131 NDCV---NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       131 npC~---~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      |.|+   +++|+|+|+..+   ++|+|+||.||.|.+ +++|..
T Consensus         1 dEC~~~~~~~C~~~C~n~~---Gsy~C~C~~Gy~L~~d~~tC~~   41 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFI---GGYFCSCPPEYFLHDDMKNCGV   41 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEET---TEEEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCCCCcCCCCEeecCC---CCEEEeCCCCCEECCCCCeecC
Confidence            4675   258999999986   689999999999998 568964

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-09  Score=65.35  Aligned_cols=37  Identities=32%  Similarity=0.924  Sum_probs=31.4

Q ss_pred             ccccc-CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        131 NDCVN-APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       131 npC~~-~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      |+|.. ++|+|+|+..+   ++|+|.||.||+|.+ +++|.+
T Consensus         2 dEC~~~~~C~~~C~n~~---Gsy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           2 DECQDPDTCSQLCVNLE---GGYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CTTTTTTSCSSCEECSS---SCCEECCCTTEEECTTTCCEEE
T ss_pred             ccCCCCCCCCCEeECCC---CCEEeECCCCCeECCCCCcccc
Confidence            67864 58999999986   689999999999998 568964

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.9e-09  Score=67.55  Aligned_cols=35  Identities=23%  Similarity=0.551  Sum_probs=30.0

Q ss_pred             cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCCC
Q psy17326        135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       135 ~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      |++|+|+|+..+   ++|+|.|+.||+|.+ +++|.+..
T Consensus         6 NGgC~~~C~~~~---g~~~C~C~~Gy~L~~D~~tC~~~~   41 (50)
T d1autl2           6 NGGCTHYCLEEV---GWRRCSCAPGYKLGDDLLQCHPAV   41 (50)
T ss_dssp             GGGCSSEEEECS---SSEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCcccEeecCC---CCeEEECCCCCEECCCCCccccCC
Confidence            469999999986   589999999999999 56897653

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.9e-09  Score=68.35  Aligned_cols=38  Identities=32%  Similarity=0.751  Sum_probs=30.7

Q ss_pred             cc--cCCcccceecCCCCCCCeeeecCCCeEEcCC-CCCCCCC
Q psy17326        133 CV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKD-GRCVEEE  172 (264)
Q Consensus       133 C~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~-~tC~~~~  172 (264)
                      |+  |++|+|+|++.++  +.++|+|+.||+|.+| ++|.+..
T Consensus         2 C~~~NGGC~h~C~~~~~--~~~~C~C~~Gy~L~~D~~tC~~~~   42 (53)
T d2bz6l1           2 CVNENGGCEQYCSDHTG--TKRSCRCHEGYSLLADGVSCTPTV   42 (53)
T ss_dssp             TTSGGGGCSSEEEEETT--TEEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCCCCCCcCEeeeCCC--CCEEeECCCCCEECCCCCcccCCC
Confidence            55  4689999999873  3588999999999994 6897653

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.9e-09  Score=67.82  Aligned_cols=37  Identities=24%  Similarity=0.770  Sum_probs=31.3

Q ss_pred             cc--cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCCC
Q psy17326        133 CV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       133 C~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      |+  |++|+|+|+..+   ++++|+|+.||+|.+ +++|++..
T Consensus         3 C~~~NGgC~h~C~n~~---g~~~C~C~~Gy~L~~D~~tC~~~~   42 (51)
T d2p3ua1           3 CSLDNGDCDQFCHEEQ---NSVVCSCARGYTLADNGKACIPTG   42 (51)
T ss_dssp             GGTGGGGCSSEEEEET---TEEEEECCTTEEECTTSSCEEESS
T ss_pred             cCCCCCCcccEeecCC---CCeEeEcCCCCEECCCCCccccCC
Confidence            55  469999999986   589999999999999 56898654

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.7e-09  Score=68.33  Aligned_cols=38  Identities=29%  Similarity=0.768  Sum_probs=31.3

Q ss_pred             cc--cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCCC
Q psy17326        133 CV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       133 C~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      |+  |++|+|+|++.+.  .+++|+|+.||+|.+ +++|.+..
T Consensus         3 C~~~NGgC~h~C~~~~~--~~~~C~C~~Gy~L~~D~~tC~~~~   43 (57)
T d1rfnb_           3 CNIKNGRCEQFCKNSAD--NKVVCSCTEGYRLAENQKSCEPAV   43 (57)
T ss_dssp             TTGGGGGCSSEEEECTT--SCEEEECCTTEEECTTSSSEEECS
T ss_pred             cCCCCCCcccEeeeCCC--CCeEeECCCCCEECCCCCccccCC
Confidence            55  4699999999873  479999999999998 46898654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=6.6e-08  Score=81.01  Aligned_cols=103  Identities=17%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             CCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-C
Q psy17326          3 ESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-E   81 (264)
Q Consensus         3 Gs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~   81 (264)
                      |..........+..|+||++|. .++||++|....+|.+.+.+|..+++            +...  .+..|.+|++. +
T Consensus       128 ~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~------------~~~~--~~~~p~gi~~d~~  192 (260)
T d1rwia_         128 SKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVV------------LPFT--DITAPWGIAVDEA  192 (260)
T ss_dssp             CSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEE------------CCCS--SCCSEEEEEECTT
T ss_pred             cceeeeeeecccCCcceeeecC-CCCEeeeccccccccccccccceeee------------eecc--ccCCCccceeeee
Confidence            3344444445788999999998 56799999999999999999998775            3333  47899999994 5


Q ss_pred             CEEEEEcCCCCeEEEEEccCCceeEEEe-ccCCCceeEEEe
Q psy17326         82 DTLYWTDRQLNRVLSAHKFRGKNQTVVS-HLISQPLSIHVH  121 (264)
Q Consensus        82 d~lYwtD~~~~~i~~~~k~~g~~~~~i~-~~~~~p~~i~v~  121 (264)
                      +.||++|+..++|.+++.. +...+++. ..+..|.+|++.
T Consensus       193 g~l~vsd~~~~~i~~~~~~-~~~~~~~~~~~~~~P~~i~~d  232 (260)
T d1rwia_         193 GTVYVTEHNTNQVVKLLAG-STTSTVLPFTGLNTPLAVAVD  232 (260)
T ss_dssp             CCEEEEETTTTEEEEECTT-CSCCEECCCCSCCCEEEEEEC
T ss_pred             eeeeeeecCCCEEEEEeCC-CCeEEEEccCCCCCeEEEEEe
Confidence            6999999999999988764 33333332 345677777764

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.59  E-value=5.1e-09  Score=66.74  Aligned_cols=35  Identities=29%  Similarity=0.716  Sum_probs=29.9

Q ss_pred             cCCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCCCC
Q psy17326        135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVEEE  172 (264)
Q Consensus       135 ~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~~~  172 (264)
                      |++|+|+|+..+   ++++|+|+.||+|.+ +++|++..
T Consensus         5 NGgC~h~C~~~~---~~~~C~C~~Gy~L~~D~~tC~~~~   40 (51)
T d1kigl_           5 NGGCDQFCREER---SEVRCSCAHGYVLGDDSKSCVSTE   40 (51)
T ss_dssp             TTSSSSCCCEET---TEECCCCCTTEEECTTSSCEEECS
T ss_pred             CCCcccEeEcCC---CcEEeEcCCCCEECCCCCccccCC
Confidence            569999999986   589999999999999 46898654

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3e-08  Score=61.42  Aligned_cols=37  Identities=27%  Similarity=0.793  Sum_probs=30.5

Q ss_pred             ccccc-----CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        131 NDCVN-----APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       131 npC~~-----~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      |+|+.     .+|+|+|+..+   ++|+|.|+.||.|.. +++|.+
T Consensus         2 dEC~~~~~~~~~C~~~C~Nt~---Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           2 DECQVAPGEAPTCDHHCHNHL---GGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CTTCCCTTSCCSSSSEEEEET---TEEEEECCTTEEECTTSSCEEE
T ss_pred             cCCcCCCCCCCCCCCCCccCC---CCeEEECCCCCeECCCCCCccC
Confidence            56753     26999999986   689999999999998 568964

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=4.8e-08  Score=60.46  Aligned_cols=36  Identities=28%  Similarity=0.856  Sum_probs=29.0

Q ss_pred             ccccc-----CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCC
Q psy17326        131 NDCVN-----APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCV  169 (264)
Q Consensus       131 npC~~-----~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~  169 (264)
                      ++|+.     .+|+|+|+..+   ++|+|.|++||+|.+ +++|.
T Consensus         2 dEC~~~~~~~~~C~~~C~Nt~---gsy~C~C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3           2 DECRTSLGDSVPCDHYCHNYL---GGYYCSCRVGYILHQNKHTCS   43 (45)
T ss_dssp             CTTC-------CCSSEEEEET---TEEEEECCTTEEECTTSSCEE
T ss_pred             cCCccCCCCcCCCCCEeecCC---CCEEEeCCCCCEECCCCCccc
Confidence            56753     25999999986   689999999999998 46785

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.6e-07  Score=56.24  Aligned_cols=32  Identities=22%  Similarity=0.570  Sum_probs=27.2

Q ss_pred             cccccc-CCcccceecCCCCCCCeeeecCCCeEEcC
Q psy17326        130 RNDCVN-APCQQLCLLSPSSSTGYTCKCIAGFRVTK  164 (264)
Q Consensus       130 ~npC~~-~~CshlCl~~p~~~~~~~C~Cp~G~~L~~  164 (264)
                      .+.|+. ++|+|+|+..+   ++|+|.|+.||+|..
T Consensus         2 idEC~~~~~C~~~C~N~~---Gsy~C~C~~Gy~l~g   34 (40)
T d1dx5i3           2 IDECENGGFCSGVCHNLP---GTFECICGPDSALAG   34 (40)
T ss_dssp             CCHHHHCSSCSSEEEECS---SSEEEEECSSSSCEE
T ss_pred             ccccCCCcCccCEeeCCC---CCeEeECCCCCeeCC
Confidence            367764 69999999986   689999999999975

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.9e-07  Score=56.21  Aligned_cols=38  Identities=26%  Similarity=0.718  Sum_probs=31.3

Q ss_pred             cccccc--CCcccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        130 RNDCVN--APCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       130 ~npC~~--~~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      .|+|+.  ..|+|.|+..+   ++|.|.|+.||+|.+ +++|++
T Consensus         3 idEC~~~~~~c~~~C~Nt~---G~y~C~C~~Gy~l~~d~~~C~D   43 (43)
T d1uzka1           3 VNECLDPTTCISGNCVNTP---GSYICDCPPDFELNPTRVGCVD   43 (43)
T ss_dssp             CCGGGSTTSSBTSEEEEET---TEEEEECCTTCEECTTSSBEEC
T ss_pred             ccccCCCCcCcCCEeECCC---CCEEEecCCCCEECCCCCcccC
Confidence            478874  47889999986   689999999999998 457863

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5e-07  Score=57.72  Aligned_cols=31  Identities=32%  Similarity=0.832  Sum_probs=27.3

Q ss_pred             CcccceecCCCCCCCeeeecCCCeEEcC-CCCCCC
Q psy17326        137 PCQQLCLLSPSSSTGYTCKCIAGFRVTK-DGRCVE  170 (264)
Q Consensus       137 ~CshlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~~  170 (264)
                      +|+|+|+..+   ++|+|.|+.||+|.. +++|..
T Consensus        21 ~c~~~C~Nt~---GsY~C~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_          21 QCQHLCHNYV---GGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             TTSSEEEEET---TEEEEECSTTCEECTTSSCEEC
T ss_pred             CccCEeEcCC---CCeEeECCCCCeECCCCCceec
Confidence            6899999997   689999999999998 568964

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.1e-06  Score=52.00  Aligned_cols=37  Identities=22%  Similarity=0.728  Sum_probs=29.6

Q ss_pred             cccccc--CCccc-ceecCCCCCCCeeeecCCCeEEcC-CCCCC
Q psy17326        130 RNDCVN--APCQQ-LCLLSPSSSTGYTCKCIAGFRVTK-DGRCV  169 (264)
Q Consensus       130 ~npC~~--~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~  169 (264)
                      .|+|..  +.|.| +|+..+   ++|+|.|+.||+|.+ +++|+
T Consensus         2 idEC~~~~~~C~~~~C~Nt~---Gsy~C~C~~Gy~l~~d~~~Cv   42 (42)
T d1lmja2           2 IDECQRDPLLCRGGVCHNTE---GSYRCECPPGHQLSPNISACI   42 (42)
T ss_dssp             CCHHHHCSSTTTTSEEEEET---TEEEEESCTTSCCCSSSCCCC
T ss_pred             ccccCCCCCCCCCCEeECCC---CCeEEeCCCCCeECcCCCccC
Confidence            366763  47876 999996   689999999999988 45784

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.7e-06  Score=51.72  Aligned_cols=37  Identities=22%  Similarity=0.710  Sum_probs=29.6

Q ss_pred             cccccc--CCcc-cceecCCCCCCCeeeecCCCeEEcC-CCCCC
Q psy17326        130 RNDCVN--APCQ-QLCLLSPSSSTGYTCKCIAGFRVTK-DGRCV  169 (264)
Q Consensus       130 ~npC~~--~~Cs-hlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC~  169 (264)
                      .|.|..  +.|. |.|+..+   ++|.|.|+.||+|.. +++|.
T Consensus         3 inEC~~~~~~c~~~~C~Nt~---Gsy~C~C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2           3 IDECQELPGLCQGGKCINTF---GSFQCRCPTGYYLNEDTRVCD   43 (43)
T ss_dssp             CCHHHHCGGGGBTSEEEECS---SCEEEECCTTCCBCTTTCBBC
T ss_pred             cccccCCCCCcCCCEEECCC---CCeEeECCCCCeECcCCCccC
Confidence            467863  4675 8999997   689999999999988 45684

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.79  E-value=0.00099  Score=56.50  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=52.2

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-CCEEEEEcCC-
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-EDTLYWTDRQ-   90 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~d~lYwtD~~-   90 (264)
                      .-...+|+++|.. ++|||+|...++|.+.+.+|.....            ++..  ....|.+|++. .+.||.++.. 
T Consensus        38 ~~~~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~------------~~~~--~~~~p~gla~~~dG~l~va~~~~  102 (319)
T d2dg1a1          38 KGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKR------------PFVS--HKANPAAIKIHKDGRLFVCYLGD  102 (319)
T ss_dssp             SCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEE------------EEEC--SSSSEEEEEECTTSCEEEEECTT
T ss_pred             CCcCcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEE------------EEeC--CCCCeeEEEECCCCCEEEEecCC
Confidence            3345699999965 6799999999999999999987554            4443  24679999995 4588887653 


Q ss_pred             ---CCeEEEEEc
Q psy17326         91 ---LNRVLSAHK   99 (264)
Q Consensus        91 ---~~~i~~~~k   99 (264)
                         ...+...+.
T Consensus       103 ~~~~~~i~~~~~  114 (319)
T d2dg1a1         103 FKSTGGIFAATE  114 (319)
T ss_dssp             SSSCCEEEEECT
T ss_pred             CccceeEEEEcC
Confidence               234454444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.77  E-value=6.2e-05  Score=64.38  Aligned_cols=97  Identities=21%  Similarity=0.190  Sum_probs=67.3

Q ss_pred             CCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-e
Q psy17326          2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-F   80 (264)
Q Consensus         2 DGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~   80 (264)
                      ||...+.+.. .+..|+||++|...+.||++|...++|.+.++++........      ...+.........|-||++ -
T Consensus       165 dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~------~~~~~~~~~~~~~PdGl~vD~  237 (319)
T d2dg1a1         165 DFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF------GATIPYYFTGHEGPDSCCIDS  237 (319)
T ss_dssp             TSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE------EEEEEEECCSSSEEEEEEEBT
T ss_pred             ccceeEEEee-ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc------cceeeeccCCccceeeeeEcC
Confidence            4555555544 788999999999999999999999999999987543211000      0001111112356999999 5


Q ss_pred             CCEEEEEcCCCCeEEEEEccCCceeE
Q psy17326         81 EDTLYWTDRQLNRVLSAHKFRGKNQT  106 (264)
Q Consensus        81 ~d~lYwtD~~~~~i~~~~k~~g~~~~  106 (264)
                      ++.||.+++..+.|.+++. .|+...
T Consensus       238 ~G~l~Va~~~~g~V~~~~p-~G~~l~  262 (319)
T d2dg1a1         238 DDNLYVAMYGQGRVLVFNK-RGYPIG  262 (319)
T ss_dssp             TCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred             CCCEEEEEcCCCEEEEECC-CCcEEE
Confidence            6789999999999999987 565443

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=9.3e-06  Score=49.26  Aligned_cols=36  Identities=22%  Similarity=0.671  Sum_probs=28.8

Q ss_pred             cccccc--CCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVN--APCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~--~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      .|+|..  ..|.+.|+..+   ++|.|.|+.||++. +++|.
T Consensus         5 idEC~~~~~~~~~~C~Nt~---Gsy~C~C~~Gy~~~-g~~C~   42 (43)
T d1emoa1           5 MDECKEPDVCKHGQCINTD---GSYRCECPFGYILA-GNECV   42 (43)
T ss_dssp             CCSSSSTTSCSSSCCCCCS---SCCCCCCCTTEEES-SSCEE
T ss_pred             eeccCCcCCCCCCEeECCC---CCeEeECCCCcccC-CCccc
Confidence            477864  36789999986   68999999999985 45675

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.62  E-value=0.00032  Score=59.19  Aligned_cols=88  Identities=11%  Similarity=0.085  Sum_probs=65.3

Q ss_pred             eCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE---eEEEeecccceeEEeCCcccccceeeee-eCCEEEE
Q psy17326         11 STKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ---DTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTLYW   86 (264)
Q Consensus        11 ~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~---~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~lYw   86 (264)
                      ..++..|||++++...+.|||+|+..+.|.+.++|+.....   ..+         .+........|.||++ -++.||.
T Consensus       144 ~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~---------~~~~~~~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         144 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV---------FIDSTGIKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE---------EEECTTSSSEEEEEEECTTSCEEE
T ss_pred             eeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEE---------EeccCcccccccceEEcCCCCEEe
Confidence            34688999999999999999999999999999998653211   001         2222223467999999 5668999


Q ss_pred             EcCCCCeEEEEEccCCceeEEE
Q psy17326         87 TDRQLNRVLSAHKFRGKNQTVV  108 (264)
Q Consensus        87 tD~~~~~i~~~~k~~g~~~~~i  108 (264)
                      +.|....|.+.+. .|+....+
T Consensus       215 a~~~~g~V~~~dp-~G~~~~~i  235 (295)
T d2ghsa1         215 ARWGEGAVDRYDT-DGNHIARY  235 (295)
T ss_dssp             EEETTTEEEEECT-TCCEEEEE
T ss_pred             eeeCCCceEEecC-CCcEeeEe
Confidence            9999889999887 46554444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.58  E-value=0.0072  Score=50.91  Aligned_cols=84  Identities=15%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE---------------------eEEEeecccc------------
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ---------------------DTLYWTDRQL------------   61 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~---------------------~~lfwtd~~~------------   61 (264)
                      ..|+||++|...++||-+|.. ..|.+.+.+|.....                     |.||+||...            
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CcceeEEEeCCCCEEEEEECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence            469999999988889888865 568899998865432                     7888887431            


Q ss_pred             ---eeEEe--CC-------cccccceeeeeeC--C----EEEEEcCCCCeEEEEEc
Q psy17326         62 ---NRVVA--GS-------HYLLHPHSLTIFE--D----TLYWTDRQLNRVLSAHK   99 (264)
Q Consensus        62 ---~~vl~--~~-------~~l~~P~~l~v~~--d----~lYwtD~~~~~i~~~~k   99 (264)
                         -+|+.  ..       ..+..|.||++..  +    +||++|...+.|++.+.
T Consensus       150 ~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~  205 (314)
T d1pjxa_         150 EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI  205 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred             cCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeec
Confidence               01110  00       1256788888732  3    79999999888888764

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.7e-05  Score=48.24  Aligned_cols=37  Identities=24%  Similarity=0.710  Sum_probs=29.0

Q ss_pred             cccccc--CCccc-ceecCCCCCCCeeeecCCCeEEcC--CCCCC
Q psy17326        130 RNDCVN--APCQQ-LCLLSPSSSTGYTCKCIAGFRVTK--DGRCV  169 (264)
Q Consensus       130 ~npC~~--~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~~--~~tC~  169 (264)
                      .|+|..  ..|+| .|+..+   ++|+|.|+.||++..  +++|+
T Consensus         3 idEC~~~~~~C~~~~C~Nt~---Gsy~C~C~~Gy~~~~~~g~~Cv   44 (44)
T d1lmja1           3 IDECRISPDLCGRGQCVNTP---GDFECKCDEGYESGFMMMKNCM   44 (44)
T ss_dssp             CCTTTTCSSTTTTSCEEEET---TEEEECCCSSEEECTTTSSSEE
T ss_pred             ccccCCCCCCCCCCEeEcCC---CCeEEeCCCCCccCCCCCCcCC
Confidence            477874  36776 999986   689999999999974  45673

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.51  E-value=0.00075  Score=55.91  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             CCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee-C
Q psy17326          3 ESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF-E   81 (264)
Q Consensus         3 Gs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~-~   81 (264)
                      |.....+-...+..|.++++|. .+++|.+|.....|...+.+|+-...            + .....+..|.++++. +
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~~~~~------------~-g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHK------------F-GCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEE------------E-ECTTTCSSEEEEEECSS
T ss_pred             ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccCCceeec------------c-cccccccccceeeeccc
Confidence            3333333334678899999996 56899999999999999999876554            2 222346789999985 5


Q ss_pred             CEEEEEcCCCCeEEEEEccCCcee
Q psy17326         82 DTLYWTDRQLNRVLSAHKFRGKNQ  105 (264)
Q Consensus        82 d~lYwtD~~~~~i~~~~k~~g~~~  105 (264)
                      +.+|++|+..+.|...+. +|+..
T Consensus       168 g~i~v~d~~~~~V~~~d~-~G~~~  190 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNY-EGQYL  190 (279)
T ss_dssp             SEEEEEEGGGTEEEEEET-TCCEE
T ss_pred             eeEEeeeccccceeeeec-CCcee
Confidence            699999999998887775 45433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.51  E-value=0.00075  Score=55.92  Aligned_cols=93  Identities=15%  Similarity=0.329  Sum_probs=66.5

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-eCCEEEEEcCCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTLYWTDRQL   91 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~lYwtD~~~   91 (264)
                      .+.+|.++++|. +++||++|...++|...+.+|....+             +.....+.+|.+|++ -++.||.+|+..
T Consensus       155 ~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~~~~~-------------~g~~g~~~~P~giavD~~G~i~Vad~~~  220 (279)
T d1q7fa_         155 HLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQ-------------IGGEGITNYPIGVGINSNGEILIADNHN  220 (279)
T ss_dssp             TCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEE-------------ESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             cccccceeeecc-ceeEEeeeccccceeeeecCCceeee-------------ecccccccCCcccccccCCeEEEEECCC
Confidence            678999999996 57899999999999999999987665             333335789999999 566899999875


Q ss_pred             C-eEEEEEccCCceeEEEecc--CCCceeEEE
Q psy17326         92 N-RVLSAHKFRGKNQTVVSHL--ISQPLSIHV  120 (264)
Q Consensus        92 ~-~i~~~~k~~g~~~~~i~~~--~~~p~~i~v  120 (264)
                      + .|...++ +|+-...+...  ...|.+|++
T Consensus       221 ~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         221 NFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             SCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             CcEEEEECC-CCCEEEEEeCCCCCCCEeEEEE
Confidence            5 4544443 56655444322  234555544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.29  E-value=0.001  Score=56.39  Aligned_cols=84  Identities=12%  Similarity=0.152  Sum_probs=59.8

Q ss_pred             eCCCCCccEEEEeCCCC----eEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeC--Ccccccceeeee-eCCE
Q psy17326         11 STKIYWPNGLTLDIATR----RVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG--SHYLLHPHSLTI-FEDT   83 (264)
Q Consensus        11 ~~~l~~P~gLaiD~~~~----rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~--~~~l~~P~~l~v-~~d~   83 (264)
                      ...+..||||++++..+    +||++|...++|.+.++++...-..         ++++..  ......|-||++ .++.
T Consensus       168 ~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~---------~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN---------KKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE---------EEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce---------eeEEEEccccccccceeeEEecCCc
Confidence            34688999999987654    7999999999999998865432110         002211  112346889999 5678


Q ss_pred             EEEEcCCCCeEEEEEccCCc
Q psy17326         84 LYWTDRQLNRVLSAHKFRGK  103 (264)
Q Consensus        84 lYwtD~~~~~i~~~~k~~g~  103 (264)
                      ||-+++..+.|.+.+..+|.
T Consensus       239 lyVa~~~~g~I~~~dp~~g~  258 (314)
T d1pjxa_         239 LLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBS
T ss_pred             EEEEEcCCCEEEEEeCCCCE
Confidence            99999999999888865554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.77  E-value=0.016  Score=48.00  Aligned_cols=85  Identities=16%  Similarity=0.096  Sum_probs=61.4

Q ss_pred             CCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeCCEEEEEcCCC
Q psy17326         12 TKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQL   91 (264)
Q Consensus        12 ~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lYwtD~~~   91 (264)
                      .....|+++++|.. +++|.+|.....|.+.+.++.....   +..+........ .....+|.+|+..++++|+++...
T Consensus       110 ~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~ngi~~~~~~l~~~~~~~  184 (302)
T d2p4oa1         110 PDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSI---WLEHPMLARSNS-ESVFPAANGLKRFGNFLYVSNTEK  184 (302)
T ss_dssp             TTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEE---EEECGGGSCSST-TCCSCSEEEEEEETTEEEEEETTT
T ss_pred             CCccccceeEEccC-CCEEeeccccccceeeeccCCccee---EecCCccceeec-cCcccccccccccCCceeeecCCC
Confidence            36778999999974 7899999999999999998876554   111110000000 012467889999999999999999


Q ss_pred             CeEEEEEccC
Q psy17326         92 NRVLSAHKFR  101 (264)
Q Consensus        92 ~~i~~~~k~~  101 (264)
                      +.|.+++...
T Consensus       185 ~~i~~~~~~~  194 (302)
T d2p4oa1         185 MLLLRIPVDS  194 (302)
T ss_dssp             TEEEEEEBCT
T ss_pred             CeEEeccccc
Confidence            9999888644

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00063  Score=41.77  Aligned_cols=36  Identities=19%  Similarity=0.660  Sum_probs=26.8

Q ss_pred             cccccccCCccc-ceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        129 TRNDCVNAPCQQ-LCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       129 ~~npC~~~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      ..|||..+.|.| .|+...   ++|+|.|+.||.   +..|..
T Consensus         7 ~~~~C~~~PC~nG~C~~~~---~~y~C~C~~G~~---G~~Ce~   43 (48)
T d1autl1           7 LEHPCASLCCGHGTCIDGI---GSFSCDCRSGWE---GRFCQR   43 (48)
T ss_dssp             SCCSSSSTTTTSEEECCCS---SCCCEEECTTEE---STTSCE
T ss_pred             CCCcccCCCCCCCEEECCC---CCCeEeCCCCCc---CCCccc
Confidence            356777777764 788764   589999999996   667864

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00073  Score=40.05  Aligned_cols=35  Identities=23%  Similarity=0.616  Sum_probs=25.3

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEE  171 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~~  171 (264)
                      +|||.|++   .|+..+. ..+|+|.||.||.   +..|+-.
T Consensus         3 ~nPC~ngG---~C~~~~~-~~~y~C~C~~g~~---G~~Ce~~   37 (41)
T d1tpga1           3 EPRCFNGG---TCQQALY-FSDFVCQCPEGFA---GKSCEID   37 (41)
T ss_dssp             SCCSCTTC---EEEEESS-SSCEEEECCTTCB---SSSCCBC
T ss_pred             CCCCCCCC---EEecCCC-CCCeEECCCCCCC---CCCcCcC
Confidence            57888864   6776543 2589999999996   5678643

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.001  Score=38.03  Aligned_cols=30  Identities=27%  Similarity=0.753  Sum_probs=21.6

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC  168 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC  168 (264)
                      ++||.+++   .|+...   ++|+|.||.||.   +..|
T Consensus         5 ~~PC~ngg---~C~~~~---~~y~C~C~~g~~---G~~C   34 (35)
T d2vj3a3           5 SSPCLHNG---RCLDKI---NEFQCECPTGFT---GHLC   34 (35)
T ss_dssp             TCCSTTTC---EEEECS---SCEEEECCTTEE---SSSS
T ss_pred             CCCCCCCc---EEECCC---CCeEEECCCCCC---CCCc
Confidence            46666653   787754   589999999996   4455

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00091  Score=39.81  Aligned_cols=31  Identities=29%  Similarity=0.840  Sum_probs=21.9

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ++||.+++   .|+..+   ++|+|.||.||+   +.+|.
T Consensus        10 ~~pC~n~g---~C~n~~---g~y~C~C~~G~~---G~~Ce   40 (42)
T d2vj3a1          10 ANPCEHAG---KCINTL---GSFECQCLQGYT---GPRCE   40 (42)
T ss_dssp             SCSSSTTC---EEEECS---SSEEEECCTTEE---STTSC
T ss_pred             CCCCCCCc---EeECCC---CCEEeECCCCCc---CCCCc
Confidence            34555432   788775   689999999997   45674

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0011  Score=38.80  Aligned_cols=33  Identities=36%  Similarity=0.983  Sum_probs=22.5

Q ss_pred             cccccCCcc--cceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        131 NDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       131 npC~~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      |+|..++|.  ..|+...   ++|+|.|+.||.   +..|+
T Consensus         2 d~C~~~PC~n~g~C~~~~---~~y~C~C~~G~~---G~~Ce   36 (39)
T d2vj3a2           2 NECVSNPCQNDATCLDQI---GEFQCICMPGYE---GVHCE   36 (39)
T ss_dssp             CTTTTCCCCSSCEEEECS---SCEEEECCTTEE---SSSSC
T ss_pred             cCCcCCCCCCCCEEECCC---CCEEEeCCCCCc---cCcCe
Confidence            344444444  2788764   689999999996   55674

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.46  E-value=0.022  Score=47.04  Aligned_cols=88  Identities=9%  Similarity=0.053  Sum_probs=64.2

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE---------------eEEEeeccc---ce------------eE
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ---------------DTLYWTDRQ---LN------------RV   64 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~---------------~~lfwtd~~---~~------------~v   64 (264)
                      .||.++|++.. ++||++|...++|.+++.+|..+..               |.||-+++.   +.            .+
T Consensus        28 ~~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          28 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcCCEEECCC-CCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            58999999984 7899999999999999999986553               566665543   11            11


Q ss_pred             EeCCcccccceeeee-eCCEEEEEcCCCCeEEEEEccCCce
Q psy17326         65 VAGSHYLLHPHSLTI-FEDTLYWTDRQLNRVLSAHKFRGKN  104 (264)
Q Consensus        65 l~~~~~l~~P~~l~v-~~d~lYwtD~~~~~i~~~~k~~g~~  104 (264)
                      ... .....|.++++ -.+.+|.++.....+++.+..++..
T Consensus       107 ~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1         107 LTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             EEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence            111 12356788887 5678899999888898888765543

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00085  Score=39.31  Aligned_cols=33  Identities=30%  Similarity=0.796  Sum_probs=22.7

Q ss_pred             cccccCCccc--ceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       131 npC~~~~Csh--lCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ++|..++|.+  .|+...   ++|+|.|+.||.   +..|+
T Consensus         4 d~C~~~PC~ngg~C~~~~---~~y~C~C~~g~~---G~~Ce   38 (39)
T d1edmb_           4 DQCESNPCLNGGSCKDDI---NSYECWCPFGFE---GKNCE   38 (39)
T ss_dssp             CTTTTCCCCTTCEEEEET---TEEEEECCTTCC---STTSC
T ss_pred             ccCCCCCCCCCcEEEcCC---CCEEEECCCCCC---CCCCC
Confidence            4555555542  687764   689999999995   55664

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.37  E-value=0.0013  Score=38.09  Aligned_cols=32  Identities=31%  Similarity=0.915  Sum_probs=21.0

Q ss_pred             cccccCCcc--cceecCCCCCCCeeeecCCCeEEcCCCCC
Q psy17326        131 NDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRC  168 (264)
Q Consensus       131 npC~~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC  168 (264)
                      ++|..++|.  ..|+...   ++|+|.|+.||+   +..|
T Consensus         3 d~C~~~PC~ngg~C~~~~---~~y~C~C~~g~~---G~~C   36 (37)
T d2c4fl1           3 DQCASSPCQNGGSCKDQL---QSYICFCLPAFE---GRNC   36 (37)
T ss_dssp             CGGGGCCCCTTCEEEEET---TEEEEECCTTEE---STTS
T ss_pred             ccCCCCCCCCCCEEECCC---CCeEEECCCCCc---CCCC
Confidence            344444443  2677654   689999999996   4455

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0018  Score=37.88  Aligned_cols=31  Identities=32%  Similarity=0.759  Sum_probs=22.2

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ++||.+++   .|+...   ++|+|.|+.||.   +..|+
T Consensus         5 ~~PC~ngg---~C~~~~---~~y~C~C~~G~~---G~~Ce   35 (39)
T d1xkba1           5 TSPCQNQG---KCKDGL---GEYTCTCLEGFE---GKNCE   35 (39)
T ss_dssp             TCCCCSSC---EECCCS---SSCCEECCTTEE---TTTTC
T ss_pred             CCCCCCCc---EEECCC---CCEEEECCCCCC---cCcCe
Confidence            46676653   566543   689999999996   56775

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0026  Score=36.97  Aligned_cols=34  Identities=29%  Similarity=0.668  Sum_probs=29.1

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKD  165 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~  165 (264)
                      ..||....|.+-|.+..  +++|+|.|..||.-.++
T Consensus         4 vDPCf~~~CE~qCqP~~--~~~Y~CiCaeGFaP~p~   37 (43)
T d1dx5i1           4 VDPCFRANCEYQCQPLD--QTSYLCVCAEGFAPIPH   37 (43)
T ss_dssp             CCGGGGCCCSSEEEECS--SSCEEEECCTTEEEETT
T ss_pred             cccccCCCcceeeeeCC--CCcceEEeccccccCCC
Confidence            47899999999999975  46899999999987663

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0015  Score=36.90  Aligned_cols=33  Identities=30%  Similarity=0.669  Sum_probs=23.6

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      -|||.++.|+    ..   .+++.|+|.+||.-.+.-+|+
T Consensus         7 gnpCGnGTCt----Nv---iGgFec~C~~GFepgpmm~CE   39 (39)
T d1emoa2           7 GNPCGNGTCK----NV---IGGFECTCEEGFEPGPMMTCE   39 (39)
T ss_dssp             TCSSSSSCEE----EC---SSSEEECCSSSSCCCSSSCCC
T ss_pred             CCccCCceee----ec---ccceEEeecCCcCCCcceecC
Confidence            3777777655    44   368999999999765555663

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0042  Score=36.40  Aligned_cols=32  Identities=31%  Similarity=0.690  Sum_probs=23.2

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      +|||.+++   .|+...   ++|+|.|+.||.   +..|..
T Consensus         6 ~~pC~ngg---~C~~~~---~~y~C~C~~g~~---G~~Ce~   37 (40)
T d1g1sa2           6 DMSCSKQG---ECLETI---GNYTCSCYPGFY---GPECEY   37 (40)
T ss_dssp             TTGGGGSE---EEEECS---SSEEEEECTTEE---STTSCE
T ss_pred             CCcCCCCc---EEECCC---CCeEEeCCCCcc---CCCCCC
Confidence            46666653   677764   689999999996   556753

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0028  Score=37.00  Aligned_cols=31  Identities=32%  Similarity=0.771  Sum_probs=22.6

Q ss_pred             ccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        130 RNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       130 ~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      +|||.+++   .|+...   ++|+|.|+.||.   +..|+
T Consensus         6 ~~pC~ngg---~C~~~~---~~~~C~C~~g~~---G~~Ce   36 (39)
T d1g1ta2           6 NTSCSGHG---ECVETI---NNYTCKCDPGFS---GLKCE   36 (39)
T ss_dssp             TTGGGGSE---EEEEET---TEEEEEECTTEE---STTSC
T ss_pred             CCcCCCCc---EEECCC---CCEEEeCCCCCc---CcCcC
Confidence            46666653   677654   589999999996   55675

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0024  Score=37.73  Aligned_cols=35  Identities=34%  Similarity=0.927  Sum_probs=22.2

Q ss_pred             cccccCCccc--ceecCCCCCCCeeeecC-CCeEEcCCCCCCC
Q psy17326        131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCI-AGFRVTKDGRCVE  170 (264)
Q Consensus       131 npC~~~~Csh--lCl~~p~~~~~~~C~Cp-~G~~L~~~~tC~~  170 (264)
                      |||..+.|.+  .|+..+  .++|+|.|+ .||.   +..|+.
T Consensus         2 d~C~~~PC~ngG~C~~~~--~~~y~C~C~~~gy~---G~~Ce~   39 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTG--FDQYKCDCTRTGFY---GENCTT   39 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEE--TTEEEEECTTSSEE---TTTTCE
T ss_pred             CcCcCCCCCCCCEEEECC--CCCEEEeCcCCCcC---CcCcCc
Confidence            4444444442  787643  257999998 5996   567753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.47  E-value=0.1  Score=43.07  Aligned_cols=82  Identities=10%  Similarity=0.034  Sum_probs=59.4

Q ss_pred             EEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-eCCEEE
Q psy17326          7 STIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FEDTLY   85 (264)
Q Consensus         7 ~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~d~lY   85 (264)
                      ++|-+..-..-+|-.-|..+++|||+|...++|.+.+.++...++             +.-.   ..|.+++. -++.++
T Consensus        10 ~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-------------~~~~---~~~~~i~~~~dg~l~   73 (295)
T d2ghsa1          10 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-------------HALP---FMGSALAKISDSKQL   73 (295)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-------------EECS---SCEEEEEEEETTEEE
T ss_pred             EEEcCCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-------------EECC---CCcEEEEEecCCCEE
Confidence            444444444558999999999999999999999999999887664             3321   35677776 455677


Q ss_pred             EEcCCCCeEEEEEccCCceeE
Q psy17326         86 WTDRQLNRVLSAHKFRGKNQT  106 (264)
Q Consensus        86 wtD~~~~~i~~~~k~~g~~~~  106 (264)
                      .+..  +++.+.+..+|+...
T Consensus        74 va~~--~gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          74 IASD--DGLFLRDTATGVLTL   92 (295)
T ss_dssp             EEET--TEEEEEETTTCCEEE
T ss_pred             EEEe--CccEEeecccceeeE
Confidence            7654  478888877776443

>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0031  Score=34.78  Aligned_cols=32  Identities=22%  Similarity=0.622  Sum_probs=23.2

Q ss_pred             cccCCcccceecCCCCCCCeeeecCCCeEEcCCCCC
Q psy17326        133 CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC  168 (264)
Q Consensus       133 C~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC  168 (264)
                      |....|.--|=+.+    ...|.||+||.|.++..|
T Consensus         3 CNqt~CPAdCdP~~----p~~C~CPeGyIldeg~~c   34 (35)
T d1dx5i2           3 CNQTACPADCDPNT----QASCECPEGYILDDGFIC   34 (35)
T ss_dssp             CCSSEEECEECTTS----TTCEECCTTEEEETTTEE
T ss_pred             cccccCCCccCCCC----CCcccCCCceEecccccc
Confidence            44446777787753    467999999999865555

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=95.34  E-value=0.0049  Score=36.49  Aligned_cols=35  Identities=31%  Similarity=0.853  Sum_probs=22.6

Q ss_pred             cccccCCccc--ceecCCCCCCCeeeecCC-CeEEcCCCCCCC
Q psy17326        131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIA-GFRVTKDGRCVE  170 (264)
Q Consensus       131 npC~~~~Csh--lCl~~p~~~~~~~C~Cp~-G~~L~~~~tC~~  170 (264)
                      |+|..+.|.+  .|+...  .++|+|.|+. ||.   +..|+.
T Consensus         3 d~C~~nPC~ngG~C~~~~--~~~y~C~C~~~G~~---G~~Ce~   40 (42)
T d1q4ga2           3 NPCCYYPCQHQGICVRFG--LDRYQCDCTRTGYS---GPNCTI   40 (42)
T ss_dssp             CGGGGCCCCTTCEEEEET--TTEEEEECTTSSEE---TTTTCE
T ss_pred             ccCcCCCCCCCCEeeeCC--CCCEEEECCCCCcC---CcCcCc
Confidence            4555555542  787643  2579999985 896   567753

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.0067  Score=37.77  Aligned_cols=35  Identities=31%  Similarity=0.824  Sum_probs=23.7

Q ss_pred             cccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      ..++|.+++   .|...+. ..+++|.||.||.   +..|+-
T Consensus        10 ~~~~C~NgG---~C~~~~~-~~~~~C~C~~gy~---G~~Ce~   44 (53)
T d3egfa_          10 YDGYCLNGG---VCMHIES-LDSYTCNCVIGYS---GDRCQT   44 (53)
T ss_dssp             SSCCSCSSC---EEEEESS-SSCEEEECCTTCC---SSSSCC
T ss_pred             CCCCCCCCc---EeeccCC-CCCeEeECCCCCc---CCCCcc
Confidence            456677643   5665443 2589999999995   567864

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0078  Score=36.64  Aligned_cols=34  Identities=24%  Similarity=0.784  Sum_probs=23.3

Q ss_pred             cccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ..++|.++|   .|...+.. .+++|.||.||+   +.+|+
T Consensus         8 ~~~~C~ngG---~C~~~~~~-~~~~C~C~~gy~---G~~Ce   41 (48)
T d1nqlb_           8 HDGYCLHDG---VCMYIEAL-DKYACNCVVGYI---GERCQ   41 (48)
T ss_dssp             TCCEECTTC---EEEEETTT-TEEEEEECTTEE---STTSC
T ss_pred             CCCCCCCCc---EEeeeCCC-CCeEEeCCCCcc---cCCCC
Confidence            457777743   56544432 479999999997   56785

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.009  Score=38.49  Aligned_cols=36  Identities=39%  Similarity=0.828  Sum_probs=23.7

Q ss_pred             cccccccC-CcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        129 TRNDCVNA-PCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       129 ~~npC~~~-~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ..|||.|+ .|..+--..  ..++|+|.|+.||.   +..|.
T Consensus        10 ~~~~C~NgG~C~~~~~~~--~~~~y~C~C~~gy~---G~~Ce   46 (63)
T d1haea_          10 EKTFCVNGGECFMVKDLS--NPSRYLCKCQPGFT---GARCT   46 (63)
T ss_dssp             HHTTSCTTCEEEEEESSS--SSCCEEEECCTTEE---STTSC
T ss_pred             cCCcCCCCCEEeeccccc--CCCCEEeECCCCCC---CCCcC
Confidence            45788875 454432221  13689999999997   56785

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.26  E-value=0.0081  Score=35.11  Aligned_cols=27  Identities=30%  Similarity=0.785  Sum_probs=20.9

Q ss_pred             cceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        140 QLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       140 hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      -.|...+   ++|+|.|+.||... +.+|.+
T Consensus        13 A~C~Nt~---Gsy~C~C~~Gy~Gd-G~~C~~   39 (40)
T d1gl4a2          13 AECRDYA---TGFCCRCVANYTGN-GRQCVA   39 (40)
T ss_dssp             EEEEECS---SCEEEEECTTEEEC-SSSEEE
T ss_pred             CEeecCC---CCeEeECCCCCcCC-CCEeeC
Confidence            3688875   68999999999853 557864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=94.08  E-value=0.95  Score=35.02  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=56.3

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCCCC
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQLN   92 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~~~   92 (264)
                      ..|.+|++++..++||.++...+.|...++.......            .+..   ...|.++++.  +.++|.+.....
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   96 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA------------TVPA---GSSPQGVAVSPDGKQVYVTNMASS   96 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE------------EEEC---SSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceee------------eeec---cccccccccccccccccccccccc
Confidence            4799999999999999999988999999987544332            3332   2467888874  447777777777


Q ss_pred             eEEEEEccCCceeEEE
Q psy17326         93 RVLSAHKFRGKNQTVV  108 (264)
Q Consensus        93 ~i~~~~k~~g~~~~~i  108 (264)
                      .+...+..++.....+
T Consensus        97 ~~~~~~~~~~~~~~~~  112 (301)
T d1l0qa2          97 TLSVIDTTSNTVAGTV  112 (301)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             eeeecccccceeeeec
Confidence            6666666555544443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=93.14  E-value=0.56  Score=36.45  Aligned_cols=88  Identities=9%  Similarity=0.121  Sum_probs=60.2

Q ss_pred             CCccEEEEeCCCCeEEEEeCC--CCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCC
Q psy17326         15 YWPNGLTLDIATRRVYFAESK--LDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQ   90 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~--~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~   90 (264)
                      ..|.+++++...+.+|.+...  .+.|...++.......            .+..   -..|.+|++  -+.+||.+.+.
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~------------~~~~---~~~~~~va~spdg~~l~va~~~  264 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA------------RIPV---GPDPAGIAVTPDGKKVYVALSF  264 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE------------EEEC---CSSEEEEEECTTSSEEEEEETT
T ss_pred             CCcceeeccccccccccccccceeeeeeeeecCCCeEEE------------EEcC---CCCEEEEEEeCCCCEEEEEECC
Confidence            468899999999999886543  4677777765433222            2222   257899998  45689999999


Q ss_pred             CCeEEEEEccCCceeEEEeccCCCceeE
Q psy17326         91 LNRVLSAHKFRGKNQTVVSHLISQPLSI  118 (264)
Q Consensus        91 ~~~i~~~~k~~g~~~~~i~~~~~~p~~i  118 (264)
                      .+.|...+..+|+-...+.-+ ..|.++
T Consensus       265 ~~~i~v~D~~t~~~~~~~~vg-~~P~~~  291 (301)
T d1l0qa2         265 CNTVSVIDTATNTITATMAVG-KNPYAS  291 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECS-SSEECC
T ss_pred             CCeEEEEECCCCeEEEEEeCC-CCCcEe
Confidence            888988888788766555432 235554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=1.5  Score=34.35  Aligned_cols=78  Identities=14%  Similarity=-0.009  Sum_probs=53.4

Q ss_pred             CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCC
Q psy17326         13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQ   90 (264)
Q Consensus        13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~   90 (264)
                      ....|.+|++++.+++||.++.....|.....+......            ..........|.++.+  .+.++|+.+..
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~------------~~~~~~~~~~~~~v~~s~d~~~~~~~~~~  148 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG------------VVDVVEGLDGCHSANISPDNRTLWVPALK  148 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE------------EEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeecccccccee------------cccccCCCccceEEEeeecceeeeccccc
Confidence            345699999999999999998877777776666554333            2221112345666665  67799999988


Q ss_pred             CCeEEEEEccCC
Q psy17326         91 LNRVLSAHKFRG  102 (264)
Q Consensus        91 ~~~i~~~~k~~g  102 (264)
                      ...|...+...+
T Consensus       149 ~~~i~~~~~~~~  160 (333)
T d1ri6a_         149 QDRICLFTVSDD  160 (333)
T ss_dssp             GTEEEEEEECTT
T ss_pred             cceeeEEEeccC
Confidence            887776654433

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.057  Score=32.89  Aligned_cols=34  Identities=21%  Similarity=0.649  Sum_probs=23.9

Q ss_pred             cccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE  170 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~  170 (264)
                      ..+.|.+++|   |.+..  ...++|.|+.||.   +.+|+.
T Consensus        12 ~~~yC~nGgc---c~~~~--~~~~~C~C~~gy~---G~rCe~   45 (50)
T d1ioxa_          12 YKHYCIKGRC---RFVVA--EQTPSCVCDEGYI---GARCER   45 (50)
T ss_dssp             GTTSCTTCCE---EEETT--TTEEEECCCTTEE---TTTTCE
T ss_pred             cCCCccCCeE---EEeCC--CCCcEeECCCCCe---eCCCcc
Confidence            3577888776   44443  2579999999997   557863

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.51  E-value=0.17  Score=42.79  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=38.8

Q ss_pred             CCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce
Q psy17326          2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR   49 (264)
Q Consensus         2 DGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r   49 (264)
                      |+...+++. +++..||||+++..++.||.++...++|.+-++++...
T Consensus       194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~  240 (340)
T d1v04a_         194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT  240 (340)
T ss_dssp             CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             cCCceEEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc
Confidence            444455444 47999999999999999999999999999999987654

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.064  Score=32.50  Aligned_cols=33  Identities=24%  Similarity=0.644  Sum_probs=23.4

Q ss_pred             cccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ..+.|.+++|-.   +..  ...++|.||.||.   +.+|+
T Consensus        11 ~~~yClnGgcc~---~~~--~~~~~C~C~~gy~---G~RCe   43 (49)
T d1moxc_          11 HTQFCFHGTCRF---LVQ--EDKPACVCHSGYV---GARCE   43 (49)
T ss_dssp             SSCSSTTEEEEE---ETT--TTEEEEEECTTEE---STTSC
T ss_pred             cCCEeeCCeEEe---cCC--CCCcEeECCCCCE---ecCCc
Confidence            357888887643   333  2579999999997   55785

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=1.8  Score=33.98  Aligned_cols=75  Identities=7%  Similarity=-0.114  Sum_probs=53.0

Q ss_pred             CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCCC
Q psy17326         14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQL   91 (264)
Q Consensus        14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~~   91 (264)
                      -..|.+|++.+..+.||-+....+.|...+++......           .+.........|.+|++.  +.+||.++...
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~-----------~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~  104 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-----------TFAAESALPGSLTHISTDHQGQFVFVGSYNA  104 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----------EEEEEEECSSCCSEEEECTTSSEEEEEETTT
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE-----------EEeeecccCCCceEEEEcCCCCEEeecccCC
Confidence            36799999999999999999888889888887654432           012111123468888885  56999998877


Q ss_pred             CeEEEEEc
Q psy17326         92 NRVLSAHK   99 (264)
Q Consensus        92 ~~i~~~~k   99 (264)
                      ..+.....
T Consensus       105 ~~v~~~~~  112 (333)
T d1ri6a_         105 GNVSVTRL  112 (333)
T ss_dssp             TEEEEEEE
T ss_pred             Cceeeecc
Confidence            76654443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.99  E-value=2.4  Score=35.28  Aligned_cols=74  Identities=9%  Similarity=0.064  Sum_probs=51.2

Q ss_pred             eCCCCCccEEEEeCCCCeEEEEeCCC---------------CeEEEEecCCCceeEeEEEeecccceeEEeCCcccccce
Q psy17326         11 STKIYWPNGLTLDIATRRVYFAESKL---------------DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPH   75 (264)
Q Consensus        11 ~~~l~~P~gLaiD~~~~rLYW~D~~~---------------~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~   75 (264)
                      ...+..||.|++.. .+.+|.++...               .....+.+|+...++            +..   .+..|.
T Consensus       146 ~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~------------~~~---~l~~pN  209 (340)
T d1v04a_         146 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV------------VAE---GFDFAN  209 (340)
T ss_dssp             CTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE------------EEE---EESSEE
T ss_pred             CccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE------------EcC---CCCccc
Confidence            34678899999997 56799996431               223334444444333            443   378999


Q ss_pred             eeeee--CCEEEEEcCCCCeEEEEEcc
Q psy17326         76 SLTIF--EDTLYWTDRQLNRVLSAHKF  100 (264)
Q Consensus        76 ~l~v~--~d~lYwtD~~~~~i~~~~k~  100 (264)
                      ||++-  +++||.++...++|.+....
T Consensus       210 GI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         210 GINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             eeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            99994  56999999999988876653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=85.00  E-value=3.3  Score=34.26  Aligned_cols=78  Identities=15%  Similarity=0.025  Sum_probs=54.2

Q ss_pred             CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCCCC
Q psy17326         15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQLN   92 (264)
Q Consensus        15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~~~   92 (264)
                      ..|.++++++.+++||.+|...++|...+++.......        ...+... ..-..|..+++.  +.++|.+.....
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~--------~~~~~~~-~~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL--------VGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE--------EEEEECS-STTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceee--------ccceeec-CCCCceEEEEECCCCceEEEeccCCC
Confidence            35789999999999999999999999888765443220        0001111 123579999985  458999998888


Q ss_pred             eEEEEEccC
Q psy17326         93 RVLSAHKFR  101 (264)
Q Consensus        93 ~i~~~~k~~  101 (264)
                      .|...+...
T Consensus       216 ~V~v~~~~~  224 (365)
T d1jofa_         216 RICEYVIDP  224 (365)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEecC
Confidence            776655433

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=0.12  Score=30.77  Aligned_cols=33  Identities=24%  Similarity=0.645  Sum_probs=22.8

Q ss_pred             cccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326        129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV  169 (264)
Q Consensus       129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~  169 (264)
                      ..++|.+++|-.+   ..  ..+++|.|+.||.   +.+|.
T Consensus        10 ~~~yC~nG~C~~~---~~--~~~~~C~C~~gY~---G~RCe   42 (46)
T d1k36a_          10 MNGYCLHGQCIYL---VD--MSQNYCRCEVGYT---GVRCE   42 (46)
T ss_dssp             CCSSCSSEEEEEE---TT--TTEEEEEECTTCS---STTSC
T ss_pred             CCCcCcCCEEEEe---CC--CCccEeECCCCce---ecCce
Confidence            4578888766432   22  2579999999996   55775

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=84.60  E-value=3.9  Score=33.79  Aligned_cols=73  Identities=12%  Similarity=0.094  Sum_probs=46.5

Q ss_pred             CccEEEEeCCCCeEEEEeCCCC-----eEEEEecC--CCceeEeEEEeecccceeEEeCCcccccceeeeee---CCEEE
Q psy17326         16 WPNGLTLDIATRRVYFAESKLD-----FIDFCNYD--GTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF---EDTLY   85 (264)
Q Consensus        16 ~P~gLaiD~~~~rLYW~D~~~~-----~Ie~~~ld--G~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~---~d~lY   85 (264)
                      +|.+|++++..+.||-+....+     .|...+.+  |.-.+.  +        .+........+|++|++.   +.+||
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~--~--------~~~~~~~~G~~p~~i~~~p~~G~~l~  325 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ--L--------FLSPTPTSGGHSNAVSPCPWSDEWMA  325 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE--E--------EEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeE--e--------EeeEEEcCCCCccEEEecCCCCCEEE
Confidence            5778999999999999875433     25544443  322221  0        022221124689999984   67899


Q ss_pred             EEcCCCCeEEEEE
Q psy17326         86 WTDRQLNRVLSAH   98 (264)
Q Consensus        86 wtD~~~~~i~~~~   98 (264)
                      .++...+.|...+
T Consensus       326 va~~~s~~v~v~~  338 (365)
T d1jofa_         326 ITDDQEGWLEIYR  338 (365)
T ss_dssp             EECSSSCEEEEEE
T ss_pred             EEeCCCCeEEEEE
Confidence            9999988665444