Psyllid ID: psy17341

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MGDKDQRKELDSMLSSLGVAPVADVMSSLSSVSANGTPESNNTPDTSILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccccEEEEcccccccccccccEEEEEEcccccccccEEEEccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEEEEccHcccccEEEEcccccccccEEEEEEccccccccccccEEEEEEccccccccEEEEEEcccEEEEEEccEEEEEc
Coil and Loop (DISEMBL)
MGDKDQRKELDSMLSSLGVAPVADVMSSlssvsangtpesnntpdtsilnsYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKdymglgdadeigdeksstklSFCRQFFDEKWsknqqmapkdgdeksstklSFCRQFFdekwsknrnvtymdwstqhPELLLASYhrnkeapnepdgvcliwntkfkkttpefeffcqspvlsccfakfFFLYA
Flexible Loop (DISEMBL)
MGDKDQRKELDSMLSSLGVAPVADVMSSLSSVSANGTPESNNTPDTSILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLSFCRQFFDEKWSknqqmapkdgdeksstKLSFCRQFFdekwsknrnVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA
Low Complexity Region (SEG)
MGDKDQRKELDSMLSSLGVAPVADVMSSLSSVSANGTPESNNTPDTSILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNtkfkkttpefeffCQSPVLSCCFAKFFFLYA
Disordered region (IsUnstruct)
***********************************************ILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLG*************LSFCRQFFD*********************LSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR*******PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY*
Disordered Region (DISOPRED)
**************************************************************************EFQHFVARTGRVMERLLAEKSDMYKDYMGLGDAD****************************************LSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY*
Disordered Region (DISEMBL)
***********SMLSSLGVAPVADVMSSL*************TPDTSILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLSFCRQFFDEKWS****************KLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA
Disordered Region (DISPRO)
********ELDSMLSSLGVA***********************************AYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADE*******T*LSFCRQFFDE******************TKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDKDQRKELDSMLSSLGVAPVADVMSSLSSVSANGTPESNNTPDTSILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q24246	663	Cytoplasmic dynein 1 inte	no	N/A	0.599	0.209	0.508	6e-44
Q29RQ3	608	Cytoplasmic dynein 1 inte	yes	N/A	0.590	0.225	0.497	7e-40
O14576	645	Cytoplasmic dynein 1 inte	yes	N/A	0.590	0.212	0.497	7e-40
O88485	628	Cytoplasmic dynein 1 inte	yes	N/A	0.590	0.218	0.497	1e-39
Q63100	643	Cytoplasmic dynein 1 inte	yes	N/A	0.590	0.213	0.497	1e-39
Q62871	638	Cytoplasmic dynein 1 inte	no	N/A	0.590	0.214	0.449	5e-36
O88487	612	Cytoplasmic dynein 1 inte	no	N/A	0.590	0.223	0.449	6e-36
Q0III3	612	Cytoplasmic dynein 1 inte	no	N/A	0.590	0.223	0.443	1e-35
Q5NVM2	638	Cytoplasmic dynein 1 inte	no	N/A	0.590	0.214	0.443	2e-35
Q13409	638	Cytoplasmic dynein 1 inte	no	N/A	0.590	0.214	0.443	2e-35

>sp|Q24246|DYIN_DROME Cytoplasmic dynein 1 intermediate chain OS=Drosophila melanogaster GN=sw PE=1 SV=3

 Score =  177 bits (449), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 239 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 298

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 299 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 328

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 329 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 377

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the help dynein bind to dynactin 150 kDa component.
Drosophila melanogaster (taxid: 7227)

>sp|Q29RQ3|DC1I1_BOVIN Cytoplasmic dynein 1 intermediate chain 1 OS=Bos taurus GN=DYNC1I1 PE=1 SV=1

 Score =  164 bits (414), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 107/167 (64%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F  RT RV+ER LAE SD++ DY G                 
Sbjct: 178 ELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG----------------- 220

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++
Sbjct: 221 -------------RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMV 267

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY+ N++AP+EPDGV L+WN KFKKTTPE+ F CQS V+S CFA+F
Sbjct: 268 ASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 314

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCTN1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Bos taurus (taxid: 9913)

>sp|O14576|DC1I1_HUMAN Cytoplasmic dynein 1 intermediate chain 1 OS=Homo sapiens GN=DYNC1I1 PE=1 SV=2

 Score =  164 bits (414), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 107/167 (64%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F  RT RV+ER LAE SD++ DY G                 
Sbjct: 215 ELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG----------------- 257

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++
Sbjct: 258 -------------RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMV 304

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY+ N++AP+EPDGV L+WN KFKKTTPE+ F CQS V+S CFA+F
Sbjct: 305 ASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 351

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Homo sapiens (taxid: 9606)

>sp|O88485|DC1I1_MOUSE Cytoplasmic dynein 1 intermediate chain 1 OS=Mus musculus GN=Dync1i1 PE=1 SV=2

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 106/167 (63%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F  RT RV+ER LAE SD++ DY G                 
Sbjct: 198 ELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG----------------- 240

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++
Sbjct: 241 -------------RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMV 287

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY  N++AP+EPDGV L+WN KFKKTTPE+ F CQS V+S CFA+F
Sbjct: 288 ASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 334

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Mus musculus (taxid: 10090)

>sp|Q63100|DC1I1_RAT Cytoplasmic dynein 1 intermediate chain 1 OS=Rattus norvegicus GN=Dync1i1 PE=1 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 106/167 (63%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F  RT RV+ER LAE SD++ DY G                 
Sbjct: 213 ELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG----------------- 255

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++
Sbjct: 256 -------------RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMV 302

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY  N++AP+EPDGV L+WN KFKKTTPE+ F CQS V+S CFA+F
Sbjct: 303 ASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 349

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Rattus norvegicus (taxid: 10116)

>sp|Q62871|DC1I2_RAT Cytoplasmic dynein 1 intermediate chain 2 OS=Rattus norvegicus GN=Dync1i2 PE=1 SV=1

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F   + R++ER L+E+ +++ DY G                 
Sbjct: 207 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 249

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        + +  K+G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 250 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 296

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY+ N+EAP+EPDGV L+WN K+KKTTPE+ F CQS V+S  FAKF
Sbjct: 297 ASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 343

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|O88487|DC1I2_MOUSE Cytoplasmic dynein 1 intermediate chain 2 OS=Mus musculus GN=Dync1i2 PE=2 SV=1

 Score =  150 bits (380), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F   + R++ER L+E+ +++ DY G                 
Sbjct: 181 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 223

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        + +  K+G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 224 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 270

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY+ N+EAP+EPDGV L+WN K+KKTTPE+ F CQS V+S  FAKF
Sbjct: 271 ASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 317

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Mus musculus (taxid: 10090)

>sp|Q0III3|DC1I2_BOVIN Cytoplasmic dynein 1 intermediate chain 2 OS=Bos taurus GN=DYNC1I2 PE=1 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F   + R++ER L+E+ +++ DY G                 
Sbjct: 181 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 223

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        + +  K+G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 224 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 270

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY+ N++AP+EPDGV L+WN K+KKTTPE+ F CQS V+S  FAKF
Sbjct: 271 ASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 317

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Bos taurus (taxid: 9913)

>sp|Q5NVM2|DC1I2_PONAB Cytoplasmic dynein 1 intermediate chain 2 OS=Pongo abelii GN=DYNC1I2 PE=2 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F   + R++ER L+E+ +++ DY G                 
Sbjct: 207 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 249

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        + +  K+G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 250 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 296

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY+ N++AP+EPDGV L+WN K+KKTTPE+ F CQS V+S  FAKF
Sbjct: 297 ASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 343

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and help dynein bind to dynactin 150 kDa component (By similarity). organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Pongo abelii (taxid: 9601)

>sp|Q13409|DC1I2_HUMAN Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2 PE=1 SV=3

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)

Query: 61  ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
           EL+E+EK +I  SEEF  F   + R++ER L+E+ +++ DY G                 
Sbjct: 207 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 249

Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
                        + +  K+G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 250 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 296

Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ASY+ N++AP+EPDGV L+WN K+KKTTPE+ F CQS V+S  FAKF
Sbjct: 297 ASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 343

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
806475	429	cytoplasmic dynein intermediate chain [D	0.599	0.324	0.514	1e-42
194893353	671	GG18006 [Drosophila erecta] gi|195482017	0.599	0.207	0.514	1e-42
3834423	634	cytoplasmic dynein intermediate chain is	0.599	0.219	0.508	2e-42
17137058	634	short wing, isoform A [Drosophila melano	0.599	0.219	0.508	2e-42
17137054	627	short wing, isoform I [Drosophila melano	0.599	0.221	0.508	2e-42
60678201	544	AT17034p [Drosophila melanogaster]	0.599	0.255	0.508	2e-42
17137062	626	short wing, isoform C [Drosophila melano	0.599	0.222	0.508	2e-42
17137064	627	short wing, isoform B [Drosophila melano	0.599	0.221	0.508	2e-42
3834427	626	cytoplasmic dynein intermediate chain is	0.599	0.222	0.508	2e-42
3834425	627	cytoplasmic dynein intermediate chain is	0.599	0.221	0.508	2e-42

>gi|806475|gb|AAB51185.1| cytoplasmic dynein intermediate chain [Drosophila melanogaster]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 108/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+SS +
Sbjct: 1   VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSSMR 60

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 61  LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 90

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 91  VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 139

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194893353|ref|XP_001977860.1| GG18006 [Drosophila erecta] gi|195482017|ref|XP_002101874.1| GE15363 [Drosophila yakuba] gi|190649509|gb|EDV46787.1| GG18006 [Drosophila erecta] gi|194189398|gb|EDX02982.1| GE15363 [Drosophila yakuba]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 108/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 247 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 306

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 307 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 336

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ASYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 337 VVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 385

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3834423|gb|AAC70933.1| cytoplasmic dynein intermediate chain isoform DIC1a [Drosophila melanogaster]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 210 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 269

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 270 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 299

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 300 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 348

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137058|ref|NP_477074.1| short wing, isoform A [Drosophila melanogaster] gi|22832680|gb|AAN09558.1| short wing, isoform A [Drosophila melanogaster] gi|323301180|gb|ADX35932.1| SD15168p [Drosophila melanogaster]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 210 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 269

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 270 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 299

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 300 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 348

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137054|ref|NP_477072.1| short wing, isoform I [Drosophila melanogaster] gi|22832675|gb|AAN09553.1| short wing, isoform I [Drosophila melanogaster]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 203 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 262

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 263 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 292

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 293 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 341

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60678201|gb|AAX33607.1| AT17034p [Drosophila melanogaster]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 119 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 178

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 179 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 208

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 209 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 257

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137062|ref|NP_477076.1| short wing, isoform C [Drosophila melanogaster] gi|22832678|gb|AAN09556.1| short wing, isoform C [Drosophila melanogaster]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 202 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 261

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 262 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 291

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 292 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 340

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137064|ref|NP_477077.1| short wing, isoform B [Drosophila melanogaster] gi|22832679|gb|AAN09557.1| short wing, isoform B [Drosophila melanogaster] gi|54650814|gb|AAV36986.1| LD22777p [Drosophila melanogaster]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 203 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 262

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 263 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 292

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 293 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 341

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3834427|gb|AAC70935.1| cytoplasmic dynein intermediate chain isoform DIC1c [Drosophila melanogaster]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 202 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 261

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 262 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 291

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 292 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 340

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3834425|gb|AAC70934.1| cytoplasmic dynein intermediate chain isoform DIC1b [Drosophila melanogaster]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)

Query: 59  VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
           V ELSE++K  I LSE FQ FV R GRV+ER L+E  D+Y DY+G GD++E  DE+S  +
Sbjct: 203 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 262

Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
           LS  R F+DE+W                              SKNR +T MDWST  PEL
Sbjct: 263 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 292

Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
           ++ SYH N+E+PNEPDGV ++WNTKFKK+TPE  F CQS V+S CFAKF
Sbjct: 293 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 341

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0003654	663	sw "short wing" [Drosophila me	0.370	0.129	0.546	3e-35
UNIPROTKB|F5H050	602	DYNC1I1 "Cytoplasmic dynein 1	0.431	0.166	0.514	4e-27
UNIPROTKB|Q29RQ3	608	DYNC1I1 "Cytoplasmic dynein 1	0.431	0.164	0.514	5.4e-27
UNIPROTKB|F1PSE8	628	DYNC1I1 "Uncharacterized prote	0.431	0.159	0.514	6.4e-27
MGI|MGI:107743	628	Dync1i1 "dynein cytoplasmic 1	0.431	0.159	0.514	1.1e-26
UNIPROTKB|E1C7N2	617	DYNC1I1 "Uncharacterized prote	0.431	0.162	0.514	2.6e-26
UNIPROTKB|G5E9K1	625	DYNC1I1 "Dynein, cytoplasmic 1	0.431	0.16	0.514	3.4e-26
UNIPROTKB|O14576	645	DYNC1I1 "Cytoplasmic dynein 1	0.431	0.155	0.514	3.9e-26
UNIPROTKB|D4A9K8	622	Dync1i1 "Cytoplasmic dynein 1	0.431	0.160	0.514	5.4e-26
RGD|2512	643	Dync1i1 "dynein cytoplasmic 1	0.431	0.155	0.514	6.4e-26

FB|FBgn0003654 sw "short wing" [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
 Identities = 47/86 (54%), Positives = 59/86 (68%)

Query:   142 DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 201
             DE+S  +LS  R F+DE+WSKNR +T MDWST  PEL++ SYH N+E+PNEPDGV ++WN
Sbjct:   292 DERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWN 351

Query:   202 XXXXXXXXXXXXXCQSPVLSCCFAKF 227
                          CQS V+S CFAKF
Sbjct:   352 TKFKKSTPEDVFHCQSAVMSTCFAKF 377

GO:0005868 "cytoplasmic dynein complex" evidence=IEA;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0001754 "eye photoreceptor cell differentiation" evidence=IGI

GO:0016482 "cytoplasmic transport" evidence=IMP

GO:0034501 "protein localization to kinetochore" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007051 "spindle organization" evidence=IMP

GO:0051642 "centrosome localization" evidence=IMP

GO:0045503 "dynein light chain binding" evidence=IPI

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0008088 "axon cargo transport" evidence=IMP

UNIPROTKB|F5H050 DYNC1I1 "Cytoplasmic dynein 1 intermediate chain 1" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
 Identities = 53/103 (51%), Positives = 71/103 (68%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY+
Sbjct:   215 FFD--YS-GRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYN 271

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   272 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 314

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|Q29RQ3 DYNC1I1 "Cytoplasmic dynein 1 intermediate chain 1" [Bos taurus (taxid:9913)]

 Score = 281 (104.0 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
 Identities = 53/103 (51%), Positives = 71/103 (68%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY+
Sbjct:   215 FFD--YS-GRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYN 271

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   272 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 314

GO:0031982 "vesicle" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=IDA

GO:0000922 "spindle pole" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|F1PSE8 DYNC1I1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 281 (104.0 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
 Identities = 53/103 (51%), Positives = 71/103 (68%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY+
Sbjct:   235 FFD--YS-GRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYN 291

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   292 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 334

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

MGI|MGI:107743 Dync1i1 "dynein cytoplasmic 1 intermediate chain 1" [Mus musculus (taxid:10090)]

 Score = 279 (103.3 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
 Identities = 53/103 (51%), Positives = 70/103 (67%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY 
Sbjct:   235 FFD--YS-GRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYS 291

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   292 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 334

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0000922 "spindle pole" evidence=ISO

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=ISO

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISO

GO:0030286 "dynein complex" evidence=TAS

GO:0031982 "vesicle" evidence=ISO

GO:0047496 "vesicle transport along microtubule" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|E1C7N2 DYNC1I1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 278 (102.9 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
 Identities = 53/103 (51%), Positives = 70/103 (67%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  + +  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY+
Sbjct:   224 FFD--YS-GRDVEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYN 280

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   281 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 323

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

UNIPROTKB|G5E9K1 DYNC1I1 "Dynein, cytoplasmic 1, intermediate chain 1, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
 Identities = 53/103 (51%), Positives = 71/103 (68%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY+
Sbjct:   232 FFD--YS-GRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYN 288

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   289 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 331

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|O14576 DYNC1I1 "Cytoplasmic dynein 1 intermediate chain 1" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
 Identities = 53/103 (51%), Positives = 71/103 (68%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY+
Sbjct:   252 FFD--YS-GRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYN 308

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   309 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 351

GO:0005874 "microtubule" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0031982 "vesicle" evidence=IDA

GO:0003774 "motor activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0008017 "microtubule binding" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0047496 "vesicle transport along microtubule" evidence=ISS

UNIPROTKB|D4A9K8 Dync1i1 "Cytoplasmic dynein 1 intermediate chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
 Identities = 53/103 (51%), Positives = 70/103 (67%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY 
Sbjct:   229 FFD--YS-GRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYS 285

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   286 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 328

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

RGD|2512 Dync1i1 "dynein cytoplasmic 1 intermediate chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 53/103 (51%), Positives = 70/103 (67%)

Query:   125 FFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 184
             FFD  +S  +++  KDGD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY 
Sbjct:   250 FFD--YS-GRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYS 306

Query:   185 RNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKF 227
              N++AP+EPDGV L+WN             CQS V+S CFA+F
Sbjct:   307 NNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 349

GO:0000776 "kinetochore" evidence=IEA;ISO;ISS

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA;ISO;ISS

GO:0003777 "microtubule motor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005868 "cytoplasmic dynein complex" evidence=IEA;ISS;IDA

GO:0005874 "microtubule" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008017 "microtubule binding" evidence=IDA

GO:0031982 "vesicle" evidence=IEA;ISO;ISS

GO:0047496 "vesicle transport along microtubule" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG1587|consensus	555		99.64
KOG0277|consensus	311		97.08
KOG0269|consensus	839		96.94
KOG0269|consensus	839		96.68
KOG4328|consensus	498		96.57
KOG0279|consensus	315		96.53
KOG0264|consensus	422		96.53
KOG1587|consensus	555		96.42
KOG0305|consensus	484		96.4
PTZ00420	568	coronin; Provisional	96.02
PTZ00421	493	coronin; Provisional	96.01
KOG0307|consensus	1049		95.79
KOG0277|consensus	311		95.71
KOG1007|consensus	370		95.68
KOG0309|consensus	1081		95.61
KOG0284|consensus	464		95.56
KOG0264|consensus	422		95.14
KOG1273|consensus	405		94.79
KOG1188|consensus	376		94.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	94.16
PLN00181	793	protein SPA1-RELATED; Provisional	94.01
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	94.0
PTZ00421	493	coronin; Provisional	93.91
PTZ00420	568	coronin; Provisional	93.56
PLN00181	793	protein SPA1-RELATED; Provisional	93.42
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	93.3
KOG0302|consensus	440		92.37
KOG0276|consensus	794		91.69
KOG1188|consensus	376		91.13
KOG0263|consensus	707		91.04
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	90.96
KOG2919|consensus	406		90.7
KOG2055|consensus	514		90.36
KOG0313|consensus	423		90.27
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	90.21
KOG0315|consensus	311		90.1
KOG4328|consensus	498		89.78
KOG0302|consensus	440		89.6
KOG0270|consensus	463		89.5
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	89.4
KOG0772|consensus	641		89.16
KOG1523|consensus	361		89.08
KOG2106|consensus	626		89.01
KOG0279|consensus	315		88.39
KOG0293|consensus	519		87.77
KOG0266|consensus	456		87.69
KOG0266|consensus	456		87.64
KOG0286|consensus	343		87.41
KOG0282|consensus	503		86.61
KOG1407|consensus	313		86.34
KOG0273|consensus	524		85.5
KOG0307|consensus	1049		85.35
KOG0276|consensus	794		85.13
KOG0292|consensus	1202		84.54
KOG0310|consensus	487		83.14
KOG4714|consensus	319		82.99
KOG1445|consensus	1012		82.66
KOG0283|consensus	712		82.61
KOG0305|consensus	484		82.44
KOG0271|consensus	480		81.75
KOG0650|consensus	733		81.66
KOG0647|consensus	347		81.6
KOG1036|consensus	323		80.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	80.45
KOG0306|consensus	888		80.35
KOG0303|consensus	472		80.3
KOG0270|consensus	463		80.2

>KOG1587|consensus

Probab=99.64  E-value=7.1e-16  Score=151.36  Aligned_cols=146  Identities=27%  Similarity=0.274  Sum_probs=119.0

Q ss_pred             ccccccccCHHHHHhhccChhHHHHHHHHHHHHHHHhccCcchhcccccCCCCCcccccccCCcccccccccchhhhhhc
Q psy17341         55 AAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLSFCRQFFDEKWSKNQ  134 (232)
Q Consensus        55 ~~~~~~~Ls~Eek~~i~~S~~f~~F~~raski~ERaL~qn~Dif~Dy~~~~~~dd~~~e~~~~~l~~~~~~~~~~~s~~~  134 (232)
                      .+.+++..+++++...+....+..++.+..+++.|+|.++.++|.+|....-.+...          |            
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~----------~------------  170 (555)
T KOG1587|consen  113 KKKKPKDDTEEEKSMSLEIEMMLNFFQNNAIDIYRALAEDINVFGDYTDRPYSSART----------S------------  170 (555)
T ss_pred             ccccCccCcHHHhhhhhhhhhhhHHHHHHHHHHHHHhhcccccccccccchhhhhhh----------c------------
Confidence            566888999999999999999999999999999999999866787774432111000          0            


Q ss_pred             cCCCCCCCcccccccccccccccccccCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe
Q psy17341        135 QMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF  214 (232)
Q Consensus       135 ~~~p~~~~~~~~~~L~~~~~F~d~~~SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~  214 (232)
                              .-....+...+.+++..|..++.| +|.|+-.|.+++.++|+-..-....++|.++|||+++| .+||++|+
T Consensus       171 --------~~~~~~~~~~~~~~~~~w~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p-~~Pe~~~~  240 (555)
T KOG1587|consen  171 --------NVFHDPLSPKRQVTDESWHPTGSV-LIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNP-NTPELVLE  240 (555)
T ss_pred             --------cccccccchhcceeeeeeccCCCc-ceEEEEeecccccccccccccccccCCceEEEEecCCC-CCceEEEe
Confidence                    011223345567788899999999 99999999999999988776666667789999999999 99999999


Q ss_pred             CCCCeEEEEecCCCCcCC
Q psy17341        215 CQSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       215 ~~S~V~~v~FsP~hPnLI  232 (232)
                      |+++|+|++|+|+|||||
T Consensus       241 ~~s~v~~~~f~p~~p~ll  258 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLL  258 (555)
T ss_pred             cCCceeEEEeccCCcceE
Confidence            999999999999999986

>KOG0277|consensus

Probab=97.08  E-value=0.0011  Score=61.02  Aligned_cols=61  Identities=18%  Similarity=0.267  Sum_probs=50.6

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnLI  232 (232)
                      -+-.|-...|||+.|+|||-+         ..+|++.||+++.| ..|.-|---++.|+|++|+++++|+|
T Consensus       146 h~~~Iy~a~~sp~~~nlfas~---------Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl  206 (311)
T KOG0277|consen  146 HNSCIYQAAFSPHIPNLFASA---------SGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVL  206 (311)
T ss_pred             CccEEEEEecCCCCCCeEEEc---------cCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEE
Confidence            344788899999999999743         35799999999999 88888444456999999999999985

>KOG0269|consensus

Probab=96.94  E-value=0.00069  Score=69.27  Aligned_cols=57  Identities=12%  Similarity=0.161  Sum_probs=50.0

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPn  230 (232)
                      --+|-+|.|||.+++.||..|-+         |++.+|++.-| .+||+-|.+. ++|+|+.||| +-+
T Consensus       176 SESiRDV~fsp~~~~~F~s~~ds---------G~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhP-nr~  233 (839)
T KOG0269|consen  176 SESIRDVKFSPGYGNKFASIHDS---------GYLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHP-NRE  233 (839)
T ss_pred             chhhhceeeccCCCceEEEecCC---------ceEEEeeccCc-hhHHHHhhcccCceEEEeecC-CCc
Confidence            34788999999999999887744         99999999999 8999999995 6999999999 443

>KOG0269|consensus

Probab=96.68  E-value=0.0038  Score=64.05  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=52.2

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnLI  232 (232)
                      +-+|.|++||| +-+++|.+ |        .|++|+||++..++..|..+.++-++|.+|+|=|..+|.|
T Consensus       220 ~GpV~c~nwhP-nr~~lATG-G--------RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hL  279 (839)
T KOG0269|consen  220 NGPVLCLNWHP-NREWLATG-G--------RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHL  279 (839)
T ss_pred             cCceEEEeecC-CCceeeec-C--------CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchh
Confidence            45899999999 77777653 2        4799999999987789999999999999999999999865

>KOG4328|consensus

Probab=96.57  E-value=0.0067  Score=59.24  Aligned_cols=60  Identities=20%  Similarity=0.266  Sum_probs=47.8

Q ss_pred             CcceeEeecCCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCC--CCCCCC-ceEEeCCC-CeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTK--FKKTTP-EFEFFCQS-PVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~-eL~aVSYgs~~~~~~~~~GlVlvWslk--~pk~~P-Eyvf~~~S-~V~~v~FsP~hPnLI  232 (232)
                      .|.||+++|||..+ -|+||+         +..|-|-+||+.  -| ..+ -|+|+-.| +|.|+.|+|-+++-|
T Consensus       186 ~~Rit~l~fHPt~~~~lva~G---------dK~G~VG~Wn~~~~~~-d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVG---------DKGGQVGLWNFGTQEK-DKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             ccceEEEEecccCcceEEEEc---------cCCCcEEEEecCCCCC-ccCceEEeccCCccccceEecCCChhhe
Confidence            46799999999998 888886         345999999995  33 455 56676665 899999999998743

>KOG0279|consensus

Probab=96.53  E-value=0.0087  Score=55.60  Aligned_cols=91  Identities=13%  Similarity=0.230  Sum_probs=71.0

Q ss_pred             CCCCcccccccccccccccccccCCcc-----eeEeecCCCCCCeEEEEeccCCCC------------------------
Q psy17341        139 KDGDEKSSTKLSFCRQFFDEKWSKNRN-----VTYMDWSTQHPELLLASYHRNKEA------------------------  189 (232)
Q Consensus       139 ~~~~~~~~~~L~~~~~F~d~~~SK~R~-----VT~IdWsP~~~eL~aVSYgs~~~~------------------------  189 (232)
                      |-..+..+..|++|....+.+++..+.     |+|++|+|...+.+.|+++.....                        
T Consensus       119 qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~  198 (315)
T KOG0279|consen  119 QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV  198 (315)
T ss_pred             eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence            445667778889988887777776554     999999999888888887765420                        


Q ss_pred             ----------CCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        190 ----------PNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       190 ----------~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                                ....+|-+++|++.-. .+ -|.|.+...|-+++|+|..+-|
T Consensus       199 ~vSpDGslcasGgkdg~~~LwdL~~~-k~-lysl~a~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  199 TVSPDGSLCASGGKDGEAMLWDLNEG-KN-LYSLEAFDIVNSLCFSPNRYWL  248 (315)
T ss_pred             EECCCCCEEecCCCCceEEEEEccCC-ce-eEeccCCCeEeeEEecCCceeE
Confidence                      0115688999999996 34 9999999999999999987644

>KOG0264|consensus

Probab=96.53  E-value=0.0058  Score=59.07  Aligned_cols=60  Identities=12%  Similarity=0.184  Sum_probs=50.2

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hPnLI  232 (232)
                      ...|.|++|||+..-|||.+         ..+|.|+||++.|. ..|-+.|.... .|++|.|||.+-+++
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~---------S~D~tV~LwDlRnL-~~~lh~~e~H~dev~~V~WSPh~etvL  332 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATG---------SADKTVALWDLRNL-NKPLHTFEGHEDEVFQVEWSPHNETVL  332 (422)
T ss_pred             CCceeEEEeCCCCCceEEec---------cCCCcEEEeechhc-ccCceeccCCCcceEEEEeCCCCCcee
Confidence            45799999999986666543         24789999999999 89999999976 899999999987653

>KOG1587|consensus

Probab=96.42  E-value=0.0034  Score=62.64  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=52.8

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCC-eEEEEecCCCCcC
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSP-VLSCCFAKFFFLY  231 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~-V~~v~FsP~hPnL  231 (232)
                      +-.-+|++|.|||.|+.+|+++.          ++.|.||+.+-. ..|-+.|.+..+ |++++|||.||.+
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~g----------DW~vriWs~~~~-~~Pl~~~~~~~~~v~~vaWSptrpav  456 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVG----------DWTVRIWSEDVI-ASPLLSLDSSPDYVTDVAWSPTRPAV  456 (555)
T ss_pred             ccCcceEeeecCCCccceeeeec----------cceeEeccccCC-CCcchhhhhccceeeeeEEcCcCceE
Confidence            56679999999999999998763          689999999954 689999999887 9999999999975

>KOG0305|consensus

Probab=96.40  E-value=0.0059  Score=60.11  Aligned_cols=57  Identities=21%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~h  228 (232)
                      .-+|-+|+|||..++|||++=|..       |++|.+||...  ........|.+.|+++.|+|.+
T Consensus       343 ~aAVKA~awcP~q~~lLAsGGGs~-------D~~i~fwn~~~--g~~i~~vdtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  343 TAAVKALAWCPWQSGLLATGGGSA-------DRCIKFWNTNT--GARIDSVDTGSQVCSLIWSKKY  399 (484)
T ss_pred             ceeeeEeeeCCCccCceEEcCCCc-------ccEEEEEEcCC--CcEecccccCCceeeEEEcCCC
Confidence            348999999999999999998874       69999999997  6899999999999999999976

>PTZ00420 coronin; Provisional

Probab=96.02  E-value=0.02  Score=57.29  Aligned_cols=60  Identities=8%  Similarity=0.191  Sum_probs=45.3

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC------CCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK------TTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk------~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|||..+.+||.+-         .+|.|.||++....      ..|..++.. ...|.+++|||...++
T Consensus        74 ~~~V~~lafsP~~~~lLASgS---------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i  140 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGS---------EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI  140 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEe---------CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence            358999999999888887762         47999999997531      125455654 3589999999988765

>PTZ00421 coronin; Provisional

Probab=96.01  E-value=0.02  Score=56.09  Aligned_cols=60  Identities=13%  Similarity=0.199  Sum_probs=45.3

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC-----CCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-----TTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk-----~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      .-.|++|+|+|....+||++         ..+|.|.||++....     ..|...|... ..|.+++|||...++
T Consensus        75 ~~~V~~v~fsP~d~~~LaSg---------S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~i  140 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTA---------SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV  140 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEE---------eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCE
Confidence            34799999999877777665         136999999996531     2466777664 589999999987664

>KOG0307|consensus

Probab=95.79  E-value=0.013  Score=61.98  Aligned_cols=64  Identities=17%  Similarity=0.269  Sum_probs=54.4

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnLI  232 (232)
                      .++.++.|.|||.+---++|+=+..      ..-+|.+|++.+. +.|-.+|++ +.+|+++.|++.+|.|+
T Consensus       205 ~~~~~S~l~WhP~~aTql~~As~dd------~~PviqlWDlR~a-ssP~k~~~~H~~GilslsWc~~D~~ll  269 (1049)
T KOG0307|consen  205 GRMHCSVLAWHPDHATQLLVASGDD------SAPVIQLWDLRFA-SSPLKILEGHQRGILSLSWCPQDPRLL  269 (1049)
T ss_pred             CccceeeeeeCCCCceeeeeecCCC------CCceeEeeccccc-CCchhhhcccccceeeeccCCCCchhh
Confidence            3467999999999998888876664      3469999999998 999999966 56999999999999875

>KOG0277|consensus

Probab=95.71  E-value=0.016  Score=53.55  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=49.2

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCCcCC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFFLYA  232 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hPnLI  232 (232)
                      -++|.+||.-++.++|.+         ..+++|.+|++.+- ..|-+.+.... .|-.++|||+|.+||
T Consensus       192 Eil~cdw~ky~~~vl~Tg---------~vd~~vr~wDir~~-r~pl~eL~gh~~AVRkvk~Sph~~~lL  250 (311)
T KOG0277|consen  192 EILCCDWSKYNHNVLATG---------GVDNLVRGWDIRNL-RTPLFELNGHGLAVRKVKFSPHHASLL  250 (311)
T ss_pred             eeEeecccccCCcEEEec---------CCCceEEEEehhhc-cccceeecCCceEEEEEecCcchhhHh
Confidence            688999998777777653         24689999999998 79999998765 899999999999875

>KOG1007|consensus

Probab=95.68  E-value=0.016  Score=54.42  Aligned_cols=60  Identities=22%  Similarity=0.273  Sum_probs=49.3

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hPnLI  232 (232)
                      +..|-++|+||.-.- ++|+.|-        +|+|.||+..++ ..|-..++-.+ =|-||.|||+|-.||
T Consensus       214 gq~vrdlDfNpnkq~-~lvt~gD--------dgyvriWD~R~t-k~pv~el~~HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQH-ILVTCGD--------DGYVRIWDTRKT-KFPVQELPGHSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             cceeeeccCCCCceE-EEEEcCC--------CccEEEEeccCC-CccccccCCCceEEEEEEecCccceEE
Confidence            345999999997554 4455443        699999999998 89999999887 799999999998775

>KOG0309|consensus

Probab=95.61  E-value=0.015  Score=60.14  Aligned_cols=63  Identities=16%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             ccCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcCC
Q psy17341        160 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       160 ~SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnLI  232 (232)
                      +.-.|+||+|.|+|++||++|.+-         -+-.|-+|.+.-| -+|-|++.. .++-..|+|+-.+||++
T Consensus       111 hghsraitd~n~~~q~pdVlatcs---------vdt~vh~wd~rSp-~~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCS---------VDTYVHAWDMRSP-HRPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             ecCccceeccccCCCCCcceeecc---------ccccceeeeccCC-CcceeeeecccccCceeeecccCcchh
Confidence            567899999999999999998653         3468999999999 999999987 68999999999999975

>KOG0284|consensus

Probab=95.56  E-value=0.015  Score=56.37  Aligned_cols=56  Identities=14%  Similarity=0.151  Sum_probs=44.0

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFF  229 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hP  229 (232)
                      +.-+|+|+++||  .|-.-+++.        .+|.|.||++.++  .||.++..+. +|.|++|||...
T Consensus       179 h~eaIRdlafSp--nDskF~t~S--------dDg~ikiWdf~~~--kee~vL~GHgwdVksvdWHP~kg  235 (464)
T KOG0284|consen  179 HAEAIRDLAFSP--NDSKFLTCS--------DDGTIKIWDFRMP--KEERVLRGHGWDVKSVDWHPTKG  235 (464)
T ss_pred             hhhhhheeccCC--CCceeEEec--------CCCeEEEEeccCC--chhheeccCCCCcceeccCCccc
Confidence            335899999999  333323332        4799999999998  6999998876 999999999753

>KOG0264|consensus

Probab=95.14  E-value=0.026  Score=54.64  Aligned_cols=60  Identities=22%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcCC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnLI  232 (232)
                      -.|-+++|||.+.+||+..         .-+|.+.||++...+..|...-.+ ..+|.|++|+|++-+||
T Consensus       228 ~~VeDV~~h~~h~~lF~sv---------~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il  288 (422)
T KOG0264|consen  228 DVVEDVAWHPLHEDLFGSV---------GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL  288 (422)
T ss_pred             cceehhhccccchhhheee---------cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence            4899999999999998632         136899999999623788888888 56999999999998875

>KOG1273|consensus

Probab=94.79  E-value=0.062  Score=51.08  Aligned_cols=57  Identities=21%  Similarity=0.210  Sum_probs=47.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      -|+|||++||+.-.=|+-+          ..+..|.+|++..+ + |-+-+.-+|+|..+.|||.+-|.
T Consensus        65 ~~pi~sl~WS~dgr~Llts----------S~D~si~lwDl~~g-s-~l~rirf~spv~~~q~hp~k~n~  121 (405)
T KOG1273|consen   65 VRPITSLCWSRDGRKLLTS----------SRDWSIKLWDLLKG-S-PLKRIRFDSPVWGAQWHPRKRNK  121 (405)
T ss_pred             ccceeEEEecCCCCEeeee----------cCCceeEEEeccCC-C-ceeEEEccCccceeeeccccCCe
Confidence            4799999999876656532          25789999999997 4 99999999999999999988764

>KOG1188|consensus

Probab=94.61  E-value=0.049  Score=51.80  Aligned_cols=56  Identities=21%  Similarity=0.300  Sum_probs=44.5

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC--CCCceEEeCCCCeEEEEecC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFFCQSPVLSCCFAK  226 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk--~~PEyvf~~~S~V~~v~FsP  226 (232)
                      -+--||+|+|||+.|+|++.+         ..+|+|+|++++-+.  .+=+.+++..|.|-++.|+.
T Consensus       164 H~DDVT~lrFHP~~pnlLlSG---------SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~  221 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSG---------SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLS  221 (376)
T ss_pred             ccCcceeEEecCCCCCeEEee---------cccceEEeeecCCCcchhhHHHhhcccceeeeeeeec
Confidence            345799999999999999754         358999999999860  11257888889999998874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=94.16  E-value=0.13  Score=43.85  Aligned_cols=58  Identities=14%  Similarity=0.155  Sum_probs=42.5

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      +.-+|.+++|+|.- +-|||.||..       ++-|.||+++.   .+-+.|. ...+.++.|||..-.|
T Consensus        58 ~~~~I~~~~WsP~g-~~favi~g~~-------~~~v~lyd~~~---~~i~~~~-~~~~n~i~wsP~G~~l  115 (194)
T PF08662_consen   58 KEGPIHDVAWSPNG-NEFAVIYGSM-------PAKVTLYDVKG---KKIFSFG-TQPRNTISWSPDGRFL  115 (194)
T ss_pred             CCCceEEEEECcCC-CEEEEEEccC-------CcccEEEcCcc---cEeEeec-CCCceEEEECCCCCEE
Confidence            33469999999965 4566777742       35899999974   3666665 4678899999986554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=94.01  E-value=0.18  Score=51.34  Aligned_cols=57  Identities=18%  Similarity=0.217  Sum_probs=44.9

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPn  230 (232)
                      ...|++|+|+|..+.+|+.+-         .+|.|.||++...  .+-..+.....|+|+.|++...+
T Consensus       575 ~~~V~~l~~~p~~~~~L~Sgs---------~Dg~v~iWd~~~~--~~~~~~~~~~~v~~v~~~~~~g~  631 (793)
T PLN00181        575 EKRVWSIDYSSADPTLLASGS---------DDGSVKLWSINQG--VSIGTIKTKANICCVQFPSESGR  631 (793)
T ss_pred             CCCEEEEEEcCCCCCEEEEEc---------CCCEEEEEECCCC--cEEEEEecCCCeEEEEEeCCCCC
Confidence            357999999998888887762         3689999999864  56677777789999999776544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=94.00  E-value=0.17  Score=40.45  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=40.6

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ..|++|+|+|.. .+++++..         +|.|.+|++...  .+...+... ..|.++.|+|....|
T Consensus        10 ~~i~~~~~~~~~-~~l~~~~~---------~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l   66 (289)
T cd00200          10 GGVTCVAFSPDG-KLLATGSG---------DGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYL   66 (289)
T ss_pred             CCEEEEEEcCCC-CEEEEeec---------CcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEE
Confidence            579999999984 45554422         689999999875  365666554 577799999986443

>PTZ00421 coronin; Provisional

Probab=93.91  E-value=0.14  Score=50.27  Aligned_cols=56  Identities=13%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFF  229 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hP  229 (232)
                      .+.|++|+|||....+||.+.         .+|.|.||++...  .+...+.. ...|.+++|+|...
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs---------~DgtVrIWDl~tg--~~~~~l~~h~~~V~sla~spdG~  181 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAG---------ADMVVNVWDVERG--KAVEVIKCHSDQITSLEWNLDGS  181 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEe---------CCCEEEEEECCCC--eEEEEEcCCCCceEEEEEECCCC
Confidence            468999999998877777652         3689999999874  56667765 45899999999654

>PTZ00420 coronin; Provisional

Probab=93.56  E-value=0.21  Score=50.15  Aligned_cols=56  Identities=14%  Similarity=0.224  Sum_probs=42.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFF  229 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hP  229 (232)
                      .+.|++|+|||....++|.+-         .+|.|.||++...  ...+.+..+..|.+++|+|.--
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS---------~DgtIrIWDl~tg--~~~~~i~~~~~V~SlswspdG~  180 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSG---------FDSFVNIWDIENE--KRAFQINMPKKLSSLKWNIKGN  180 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEe---------CCCeEEEEECCCC--cEEEEEecCCcEEEEEECCCCC
Confidence            467999999998766665431         2589999999885  3455666678999999998643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=93.42  E-value=0.17  Score=51.50  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      +..|++++|+|....++|++.         .+|.|.||++...  .....+.. ...|.+++|+|.++++
T Consensus       532 ~~~v~~l~~~~~~~~~las~~---------~Dg~v~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~  590 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSN---------FEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTL  590 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEe---------CCCeEEEEECCCC--eEEEEecCCCCCEEEEEEcCCCCCE
Confidence            456899999998777776543         3699999999864  34444544 3579999999987765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=93.30  E-value=0.28  Score=39.27  Aligned_cols=57  Identities=16%  Similarity=0.130  Sum_probs=42.0

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hPnL  231 (232)
                      ...|++++|+|. ..+++++.         .+|.|.+|++...  .+...+.... .|.++.|+|....|
T Consensus       135 ~~~i~~~~~~~~-~~~l~~~~---------~~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l  192 (289)
T cd00200         135 TDWVNSVAFSPD-GTFVASSS---------QDGTIKLWDLRTG--KCVATLTGHTGEVNSVAFSPDGEKL  192 (289)
T ss_pred             CCcEEEEEEcCc-CCEEEEEc---------CCCcEEEEEcccc--ccceeEecCccccceEEECCCcCEE
Confidence            447999999998 45555442         3589999999864  5666666654 89999999976443

>KOG0302|consensus

Probab=92.37  E-value=0.24  Score=47.86  Aligned_cols=59  Identities=15%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFF  229 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hP  229 (232)
                      -.++|-+++|||....+||-+         .-+|.|.||++...+..|-....+ +++|-.+.||..-|
T Consensus       256 H~~SVEDLqWSptE~~vfaSc---------S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~  315 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFASC---------SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP  315 (440)
T ss_pred             cccchhhhccCCccCceEEee---------ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence            457999999999999999754         247999999999976777776666 68999999999888

>KOG0276|consensus

Probab=91.69  E-value=0.35  Score=49.45  Aligned_cols=58  Identities=12%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCC--CCcCC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKF--FFLYA  232 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~--hPnLI  232 (232)
                      +=|.+|+++|+.+.-||-+         .-++.|.||++--|  +|-++|+.+ .+|-|++|-+-  .|+||
T Consensus       141 HyVMqv~fnPkD~ntFaS~---------sLDrTVKVWslgs~--~~nfTl~gHekGVN~Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  141 HYVMQVAFNPKDPNTFASA---------SLDRTVKVWSLGSP--HPNFTLEGHEKGVNCVDYYTGGDKPYLI  201 (794)
T ss_pred             eEEEEEEecCCCccceeee---------eccccEEEEEcCCC--CCceeeeccccCcceEEeccCCCcceEE
Confidence            4699999999999888754         24789999999996  899999996 59999999764  57765

>KOG1188|consensus

Probab=91.13  E-value=0.16  Score=48.44  Aligned_cols=41  Identities=10%  Similarity=0.035  Sum_probs=32.5

Q ss_pred             CCCCcEEEEEeCCCCCCCCceE-EeCC-CCeEEEEecCCCCcCC
Q psy17341        191 NEPDGVCLIWNTKFKKTTPEFE-FFCQ-SPVLSCCFAKFFFLYA  232 (232)
Q Consensus       191 ~~~~GlVlvWslk~pk~~PEyv-f~~~-S~V~~v~FsP~hPnLI  232 (232)
                      ...+-.|.+|+..+- ..|-.. +++. .+|++++|||.+||||
T Consensus       139 ~~s~A~v~lwDvR~~-qq~l~~~~eSH~DDVT~lrFHP~~pnlL  181 (376)
T KOG1188|consen  139 TRSDASVVLWDVRSE-QQLLRQLNESHNDDVTQLRFHPSDPNLL  181 (376)
T ss_pred             ccCceEEEEEEeccc-cchhhhhhhhccCcceeEEecCCCCCeE
Confidence            346789999999997 676443 4443 5999999999999986

>KOG0263|consensus

Probab=91.04  E-value=0.21  Score=51.36  Aligned_cols=55  Identities=18%  Similarity=0.130  Sum_probs=40.3

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCc
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFL  230 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPn  230 (232)
                      -+|-+++|+|.         |-+ |+.-..|+.+.+|+.-.  ++|+++|-++ ++|-|++|||.--+
T Consensus       494 ~PVwdV~F~P~---------GyY-Fatas~D~tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y  549 (707)
T KOG0263|consen  494 APVWDVQFAPR---------GYY-FATASHDQTARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNY  549 (707)
T ss_pred             cceeeEEecCC---------ceE-EEecCCCceeeeeeccc--CCchhhhcccccccceEEECCcccc
Confidence            35666676665         222 22224578999999988  6999999996 79999999997544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=90.96  E-value=0.74  Score=39.29  Aligned_cols=59  Identities=17%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ...+..|.|||+-.=|+++++|..       .|.|.||+....  .+-..++ ...+++++|+|.=-+|
T Consensus       100 ~~~~n~i~wsP~G~~l~~~g~~n~-------~G~l~~wd~~~~--~~i~~~~-~~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen  100 TQPRNTISWSPDGRFLVLAGFGNL-------NGDLEFWDVRKK--KKISTFE-HSDATDVEWSPDGRYL  158 (194)
T ss_pred             CCCceEEEECCCCCEEEEEEccCC-------CcEEEEEECCCC--EEeeccc-cCcEEEEEEcCCCCEE
Confidence            346788999999888888888753       499999999964  2333333 3468999999975544

>KOG2919|consensus

Probab=90.70  E-value=0.53  Score=45.04  Aligned_cols=36  Identities=17%  Similarity=0.072  Sum_probs=26.6

Q ss_pred             CCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCC
Q psy17341        193 PDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFF  229 (232)
Q Consensus       193 ~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hP  229 (232)
                      .+|.|-+|++|.+ ..|-.++-..+ -|-.|.+||.-|
T Consensus       317 tdG~V~vwdlk~~-gn~~sv~~~~sd~vNgvslnP~mp  353 (406)
T KOG2919|consen  317 TDGSVRVWDLKDL-GNEVSVTGNYSDTVNGVSLNPIMP  353 (406)
T ss_pred             CCccEEEEecCCC-CCcccccccccccccceecCcccc
Confidence            5688888888887 67666666665 567788888755

>KOG2055|consensus

Probab=90.36  E-value=3.4  Score=41.04  Aligned_cols=56  Identities=20%  Similarity=0.231  Sum_probs=40.5

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCC--ceEEeCCCCeEEEEecCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP--EFEFFCQSPVLSCCFAKFF  228 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~P--Eyvf~~~S~V~~v~FsP~h  228 (232)
                      -++.||||.|||..|=|++++|+.          .+.||-+--+ .+|  .-++-..+||-|+.|+|..
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~----------~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G  269 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDG----------TLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNG  269 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCC----------cEEEEEecCc-cChhheeeeeccCccceeeecCCC
Confidence            467899999999999999888754          4555555443 444  3444556788898888864

>KOG0313|consensus

Probab=90.27  E-value=0.7  Score=44.73  Aligned_cols=52  Identities=19%  Similarity=0.397  Sum_probs=43.5

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAK  226 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP  226 (232)
                      =|+++.|||.++-+|+-+         ..+|.|.+|++.-+ .-|-|.+... ..|+|++|+.
T Consensus       347 wVssvkwsp~~~~~~~S~---------S~D~t~klWDvRS~-k~plydI~~h~DKvl~vdW~~  399 (423)
T KOG0313|consen  347 WVSSVKWSPTNEFQLVSG---------SYDNTVKLWDVRST-KAPLYDIAGHNDKVLSVDWNE  399 (423)
T ss_pred             hhhheecCCCCceEEEEE---------ecCCeEEEEEeccC-CCcceeeccCCceEEEEeccC
Confidence            699999999998766532         23689999999998 7899999986 5899999985

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.21  E-value=0.6  Score=28.66  Aligned_cols=29  Identities=21%  Similarity=0.627  Sum_probs=21.0

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEe
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN  201 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWs  201 (232)
                      ...|++|+|+|. ..+||++-         .+|.|.||+
T Consensus        11 ~~~i~~i~~~~~-~~~~~s~~---------~D~~i~vwd   39 (39)
T PF00400_consen   11 SSSINSIAWSPD-GNFLASGS---------SDGTIRVWD   39 (39)
T ss_dssp             SSSEEEEEEETT-SSEEEEEE---------TTSEEEEEE
T ss_pred             CCcEEEEEEecc-cccceeeC---------CCCEEEEEC
Confidence            458999999999 44444432         358899996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0315|consensus

Probab=90.10  E-value=0.72  Score=42.82  Aligned_cols=73  Identities=12%  Similarity=0.170  Sum_probs=52.2

Q ss_pred             ccccccCCcceeEeecCCCCCCeEEEEeccCCC--CCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcCC
Q psy17341        156 FDEKWSKNRNVTYMDWSTQHPELLLASYHRNKE--APNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       156 ~d~~~SK~R~VT~IdWsP~~~eL~aVSYgs~~~--~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnLI  232 (232)
                      ||.+-.+..+|..++-+  .+++-+|+|....-  .....+|.|.||++..+  -=++.|..+++|.|+..||..-.||
T Consensus        66 yD~~S~np~Pv~t~e~h--~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~~~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   66 YDLNSNNPNPVATFEGH--TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNYQHNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             EEccCCCCCceeEEecc--CCceEEEEEeecCeEEEecCCCceEEEEeccCc--ccchhccCCCCcceEEecCCcceEE
Confidence            56665555577666655  56788888765431  12336899999999997  3456667779999999999877664

>KOG4328|consensus

Probab=89.78  E-value=0.42  Score=47.06  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCc-eEEeC--CCCeEEEEecCCCCcCC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE-FEFFC--QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PE-yvf~~--~S~V~~v~FsP~hPnLI  232 (232)
                      +.|++|+.||..|.+||.+         ..++.++||++...-..|+ ++-..  .-.|-++.|||.--+||
T Consensus       323 kKI~sv~~NP~~p~~laT~---------s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~  385 (498)
T KOG4328|consen  323 KKITSVALNPVCPWFLATA---------SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL  385 (498)
T ss_pred             cccceeecCCCCchheeec---------ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE
Confidence            4899999999999999864         2468999999988434454 33333  33999999999877754

>KOG0302|consensus

Probab=89.60  E-value=0.87  Score=44.18  Aligned_cols=38  Identities=24%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             CCcEEEEEeCCCCC-CCCceEEeC-CCCeEEEEecCCCCc
Q psy17341        193 PDGVCLIWNTKFKK-TTPEFEFFC-QSPVLSCCFAKFFFL  230 (232)
Q Consensus       193 ~~GlVlvWslk~pk-~~PEyvf~~-~S~V~~v~FsP~hPn  230 (232)
                      -+|.+.||+|+.-+ ..|--.|.. ..+|+|+.|||..-.
T Consensus       322 DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  322 DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            47999999999842 346445544 479999999997644

>KOG0270|consensus

Probab=89.50  E-value=1.1  Score=44.02  Aligned_cols=63  Identities=11%  Similarity=0.225  Sum_probs=54.3

Q ss_pred             ccCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcCC
Q psy17341        160 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLYA  232 (232)
Q Consensus       160 ~SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnLI  232 (232)
                      |.-.--|--|.|+|+.+..|.++         .-+|.|.-+++.++ ..|-+.+.+. .+|.+++++++.||++
T Consensus       326 wk~~g~VEkv~w~~~se~~f~~~---------tddG~v~~~D~R~~-~~~vwt~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  326 WKFDGEVEKVAWDPHSENSFFVS---------TDDGTVYYFDIRNP-GKPVWTLKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             EEeccceEEEEecCCCceeEEEe---------cCCceEEeeecCCC-CCceeEEEeccCCcceEEecCCCCcce
Confidence            33344678899999999999887         25799999999999 8999999996 5999999999999985

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=89.40  E-value=0.73  Score=31.55  Aligned_cols=29  Identities=24%  Similarity=0.551  Sum_probs=23.0

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK  203 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk  203 (232)
                      .|++++|||+ -||+|+++.         +|-|.||-+.
T Consensus        13 ~v~~~~w~P~-mdLiA~~t~---------~g~v~v~Rl~   41 (47)
T PF12894_consen   13 RVSCMSWCPT-MDLIALGTE---------DGEVLVYRLN   41 (47)
T ss_pred             cEEEEEECCC-CCEEEEEEC---------CCeEEEEECC
Confidence            5999999999 569999874         3677777663

>KOG0772|consensus

Probab=89.16  E-value=0.7  Score=46.42  Aligned_cols=65  Identities=25%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             cccccCCc--ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-----CCeEEEEecCCCC
Q psy17341        157 DEKWSKNR--NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-----SPVLSCCFAKFFF  229 (232)
Q Consensus       157 d~~~SK~R--~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-----S~V~~v~FsP~hP  229 (232)
                      |-.-||+.  .+||.+|||.+.+.|+.+         ..+|.+.||++-++|.+=+-+-+-.     .+|++|.|+|.-+
T Consensus       260 Dm~nTKGHia~lt~g~whP~~k~~FlT~---------s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~  330 (641)
T KOG0772|consen  260 DMYNTKGHIAELTCGCWHPDNKEEFLTC---------SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK  330 (641)
T ss_pred             hhhccCCceeeeeccccccCcccceEEe---------cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc
Confidence            44556765  489999999999888654         2479999999999866655555443     4799999999765


Q ss_pred             c
Q psy17341        230 L  230 (232)
Q Consensus       230 n  230 (232)
                      -
T Consensus       331 ~  331 (641)
T KOG0772|consen  331 L  331 (641)
T ss_pred             h
Confidence            3

>KOG1523|consensus

Probab=89.08  E-value=0.75  Score=43.74  Aligned_cols=56  Identities=23%  Similarity=0.259  Sum_probs=34.5

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCC----CCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEA----PNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFF  228 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~----~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~h  228 (232)
                      -+|++|||.|+|+ .+.|||+=|.+..+    .++.+.    |=-|-- ..|-     .|-|+|++|||-+
T Consensus        99 iNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdW----WVsKhi-kkPi-----rStv~sldWhpnn  158 (361)
T KOG1523|consen   99 INRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDW----WVSKHI-KKPI-----RSTVTSLDWHPNN  158 (361)
T ss_pred             eccceeeEeecCc-CceEEeccCccEEEEEEEecccce----ehhhhh-CCcc-----ccceeeeeccCCc
Confidence            5899999999996 56788876665311    111111    111222 2342     2889999999865

>KOG2106|consensus

Probab=89.01  E-value=0.45  Score=47.64  Aligned_cols=62  Identities=15%  Similarity=0.036  Sum_probs=48.3

Q ss_pred             CCcceeEeecCCCCCC--eEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcCC
Q psy17341        162 KNRNVTYMDWSTQHPE--LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       162 K~R~VT~IdWsP~~~e--L~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnLI  232 (232)
                      ..|.|+||+||+.+.+  |.+|-++.        +-+.-||+..-. ..---+-.++..|..+.|||-.||||
T Consensus       153 f~~GV~~vaFsk~~~G~~l~~vD~s~--------~h~lSVWdWqk~-~~~~~vk~sne~v~~a~FHPtd~nli  216 (626)
T KOG2106|consen  153 FDRGVTCVAFSKINGGSLLCAVDDSN--------PHMLSVWDWQKK-AKLGPVKTSNEVVFLATFHPTDPNLI  216 (626)
T ss_pred             ccccceeeeecccCCCceEEEecCCC--------ccccchhhchhh-hccCcceeccceEEEEEeccCCCcEE
Confidence            6789999999999964  55555554        347889998775 45555666778999999999999986

>KOG0279|consensus

Probab=88.39  E-value=1.1  Score=41.87  Aligned_cols=88  Identities=15%  Similarity=0.093  Sum_probs=57.4

Q ss_pred             cccccccccccccccccccCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEE
Q psy17341        143 EKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLS  221 (232)
Q Consensus       143 ~~~~~~L~~~~~F~d~~~SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~  221 (232)
                      +-+..+-...|....+.+--+++|-.+.=|.|+-.=++++-.++.+.....+|.+.+|++.--  .|-..|.-+ .+|||
T Consensus        33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVls  110 (315)
T KOG0279|consen   33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLS  110 (315)
T ss_pred             EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEE
Confidence            333344455566654455666777777776666433344433333333457899999999984  566666665 49999


Q ss_pred             EEecCCCCcCC
Q psy17341        222 CCFAKFFFLYA  232 (232)
Q Consensus       222 v~FsP~hPnLI  232 (232)
                      ++|+|.+-.||
T Consensus       111 va~s~dn~qiv  121 (315)
T KOG0279|consen  111 VAFSTDNRQIV  121 (315)
T ss_pred             EEecCCCceee
Confidence            99999887654

>KOG0293|consensus

Probab=87.77  E-value=0.39  Score=47.10  Aligned_cols=36  Identities=22%  Similarity=0.591  Sum_probs=30.0

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP  209 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~P  209 (232)
                      ++|.||+|||..|.+||-+         .-+|.|.||..+.+ .+|
T Consensus       483 ~~vNcVswNP~~p~m~ASa---------sDDgtIRIWg~~~~-~rq  518 (519)
T KOG0293|consen  483 KTVNCVSWNPADPEMFASA---------SDDGTIRIWGPSDN-NRQ  518 (519)
T ss_pred             ceeeEEecCCCCHHHhhcc---------CCCCeEEEecCCcc-ccC
Confidence            7999999999999999743         24799999999876 554

>KOG0266|consensus

Probab=87.69  E-value=1.4  Score=42.26  Aligned_cols=60  Identities=22%  Similarity=0.122  Sum_probs=45.2

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCCcCC
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFFLYA  232 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hPnLI  232 (232)
                      .-.+.|++++|+|.-.  ++++-        ..++.|.||+++.+ .+=.++|.+.. +|+|++|+|.- ++|
T Consensus       201 ~h~~~v~~~~fs~d~~--~l~s~--------s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g-~~i  261 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGS--YLLSG--------SDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDG-NLL  261 (456)
T ss_pred             ccccceeeeEECCCCc--EEEEe--------cCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCC-CEE
Confidence            4567899999998766  22221        24689999999665 56678888864 99999999987 653

>KOG0266|consensus

Probab=87.64  E-value=1.5  Score=42.11  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=42.4

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~h  228 (232)
                      .-.|+|++|+|.- .+++.+         ..+|.|.||+++.-  .+...|...+ +|.+++|++.-
T Consensus       246 ~~~v~~~~f~p~g-~~i~Sg---------s~D~tvriWd~~~~--~~~~~l~~hs~~is~~~f~~d~  300 (456)
T KOG0266|consen  246 STYVTSVAFSPDG-NLLVSG---------SDDGTVRIWDVRTG--ECVRKLKGHSDGISGLAFSPDG  300 (456)
T ss_pred             CCceEEEEecCCC-CEEEEe---------cCCCcEEEEeccCC--eEEEeeeccCCceEEEEECCCC
Confidence            3468999999888 555433         24689999999994  6888888876 99999999864

>KOG0286|consensus

Probab=87.41  E-value=1.7  Score=41.14  Aligned_cols=55  Identities=24%  Similarity=0.410  Sum_probs=44.4

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFF  228 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~h  228 (232)
                      ..-.|.+|+|++.-.-|+-+          ..+|-++||+...  +.-+..+.-+| =||+++|+|.-
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSa----------SqDGklIvWDs~T--tnK~haipl~s~WVMtCA~sPSg  109 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSA----------SQDGKLIVWDSFT--TNKVHAIPLPSSWVMTCAYSPSG  109 (343)
T ss_pred             cccceeeeEecCCcCeEEee----------ccCCeEEEEEccc--ccceeEEecCceeEEEEEECCCC
Confidence            34479999999988777633          2589999999887  46788888887 79999999973

>KOG0282|consensus

Probab=86.61  E-value=0.62  Score=46.11  Aligned_cols=58  Identities=16%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnLI  232 (232)
                      +++|.+++||+.=-.++-+||          ++.|.+|++-.  ..=-.-|+....++|++|+|.+||+.
T Consensus       258 ~k~Vrd~~~s~~g~~fLS~sf----------D~~lKlwDtET--G~~~~~f~~~~~~~cvkf~pd~~n~f  315 (503)
T KOG0282|consen  258 RKPVRDASFNNCGTSFLSASF----------DRFLKLWDTET--GQVLSRFHLDKVPTCVKFHPDNQNIF  315 (503)
T ss_pred             hhhhhhhhccccCCeeeeeec----------ceeeeeecccc--ceEEEEEecCCCceeeecCCCCCcEE
Confidence            568999999987777777766          56889999887  45677899999999999999999863

>KOG1407|consensus

Probab=86.34  E-value=1.2  Score=41.51  Aligned_cols=52  Identities=13%  Similarity=0.298  Sum_probs=36.5

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF  227 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~  227 (232)
                      .|-.++|+|++|++||+++|.+         .|++|++.-.  .|-...+...+=.-+.|+|.
T Consensus        66 svdql~w~~~~~d~~atas~dk---------~ir~wd~r~~--k~~~~i~~~~eni~i~wsp~  117 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDK---------TIRIWDIRSG--KCTARIETKGENINITWSPD  117 (313)
T ss_pred             chhhheeCCCCCcceEEecCCc---------eEEEEEeccC--cEEEEeeccCcceEEEEcCC
Confidence            7889999999999999999875         5788887763  45444444443333444443

>KOG0273|consensus

Probab=85.50  E-value=2.3  Score=42.32  Aligned_cols=60  Identities=25%  Similarity=0.414  Sum_probs=43.3

Q ss_pred             CCcceeEeecCCCCC-------CeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEE-eCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHP-------ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-FCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~-------eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf-~~~S~V~~v~FsP~hPnL  231 (232)
                      -.+.|-.|.|+|..|       ++..++-+        .++.|.+|+...+  -|-+.| .-+.+|++++|+|.--+|
T Consensus       400 Hskei~t~~wsp~g~v~~n~~~~~~l~sas--------~dstV~lwdv~~g--v~i~~f~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  400 HSKEIYTIKWSPTGPVTSNPNMNLMLASAS--------FDSTVKLWDVESG--VPIHTLMKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             hccceeeEeecCCCCccCCCcCCceEEEee--------cCCeEEEEEccCC--ceeEeeccCCCceEEEEecCCCcEE
Confidence            345677788888765       22222222        3689999999996  799999 457799999999975443

>KOG0307|consensus

Probab=85.35  E-value=0.67  Score=49.58  Aligned_cols=58  Identities=21%  Similarity=0.209  Sum_probs=45.3

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceE--EeCCCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE--FFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyv--f~~~S~V~~v~FsP~hPnL  231 (232)
                      -+|..++|||.-+.|+|.+         ..+|-|+||+++++ ..|=-.  -.-++.|.|+.|+...-++
T Consensus       117 G~V~gLDfN~~q~nlLASG---------a~~geI~iWDlnn~-~tP~~~~~~~~~~eI~~lsWNrkvqhI  176 (1049)
T KOG0307|consen  117 GPVLGLDFNPFQGNLLASG---------ADDGEILIWDLNKP-ETPFTPGSQAPPSEIKCLSWNRKVSHI  176 (1049)
T ss_pred             CceeeeeccccCCceeecc---------CCCCcEEEeccCCc-CCCCCCCCCCCcccceEeccchhhhHH
Confidence            3899999999999998754         34699999999997 666332  2346899999999876554

>KOG0276|consensus

Probab=85.13  E-value=1.6  Score=44.78  Aligned_cols=56  Identities=14%  Similarity=0.068  Sum_probs=45.3

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCCcC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFFLY  231 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hPnL  231 (232)
                      =|.||.-||+-|=++-.          .-+=+|.+|+.-+. =.=+-+|+-.+ .||+++|+|.+||-
T Consensus        99 yIR~iavHPt~P~vLts----------SDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~nt  155 (794)
T KOG0276|consen   99 YIRSIAVHPTLPYVLTS----------SDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNT  155 (794)
T ss_pred             ceeeeeecCCCCeEEec----------CCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccc
Confidence            46788889998866622          23579999999996 56689999987 99999999999983

>KOG0292|consensus

Probab=84.54  E-value=0.95  Score=48.12  Aligned_cols=59  Identities=25%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCc
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPn  230 (232)
                      ||.-.|-.|+|||+-|=++ +|.+         .|.|.+|+-.|- +-=+..-+-..+|--++|||..|-
T Consensus         7 skSsRvKglsFHP~rPwIL-tslH---------sG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qpl   65 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWIL-TSLH---------SGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPL   65 (1202)
T ss_pred             cccccccceecCCCCCEEE-Eeec---------Cceeeeehhhhh-hHHhhhhccCCccceeeecCCCCe
Confidence            5666899999999999555 4443         499999999996 566677777889999999999984

>KOG0310|consensus

Probab=83.14  E-value=1  Score=44.46  Aligned_cols=79  Identities=16%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             ccccccc-cccccCCcceeEeecCCCCCCeEEEEec-------cCCC-------------------------CCCCCCcE
Q psy17341        150 SFCRQFF-DEKWSKNRNVTYMDWSTQHPELLLASYH-------RNKE-------------------------APNEPDGV  196 (232)
Q Consensus       150 ~~~~~F~-d~~~SK~R~VT~IdWsP~~~eL~aVSYg-------s~~~-------------------------~~~~~~Gl  196 (232)
                      +.|++|+ ..-.-..-+||+|++||++|.=|||+-+       +..-                         +..+..|+
T Consensus        12 ~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~   91 (487)
T KOG0310|consen   12 RYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGH   91 (487)
T ss_pred             hhhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCc
Confidence            4455552 2222356699999999999988888733       3210                         12346699


Q ss_pred             EEEEeCCCCCCCCceEEeCCCCeEEEEecCCCC
Q psy17341        197 CLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFF  229 (232)
Q Consensus       197 VlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hP  229 (232)
                      |.|+++|-. .-=.-+...+++|-.+.|+|+.-
T Consensus        92 V~vfD~k~r-~iLR~~~ah~apv~~~~f~~~d~  123 (487)
T KOG0310|consen   92 VKVFDMKSR-VILRQLYAHQAPVHVTKFSPQDN  123 (487)
T ss_pred             EEEeccccH-HHHHHHhhccCceeEEEecccCC
Confidence            999996552 22222333467999999999753

>KOG4714|consensus

Probab=82.99  E-value=0.78  Score=42.79  Aligned_cols=66  Identities=14%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             ccccccccCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCc
Q psy17341        154 QFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFL  230 (232)
Q Consensus       154 ~F~d~~~SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPn  230 (232)
                      .|...+.+-++ ||+++-||.-..+++.+-         .+|.|-||+..+- .+|--++.+ .+++--+.|||.+|-
T Consensus       171 t~~~~~~~~~~-v~~l~~hp~qq~~v~cgt---------~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~  237 (319)
T KOG4714|consen  171 TLIPSKKALDA-VTALCSHPAQQHLVCCGT---------DDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPE  237 (319)
T ss_pred             ccccccccccc-chhhhCCcccccEEEEec---------CCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCch
Confidence            34333334343 999999999888877652         4699999999998 899655555 679999999999984

>KOG1445|consensus

Probab=82.66  E-value=1.8  Score=44.74  Aligned_cols=62  Identities=21%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCC-----CCCCCceEEeCCC-CeEEEEecCCCCcC
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF-----KKTTPEFEFFCQS-PVLSCCFAKFFFLY  231 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~-----pk~~PEyvf~~~S-~V~~v~FsP~hPnL  231 (232)
                      -.+-.||++.|.|..++=+||+.         -+|.|.||-+.-     +...||-++.... .|+++.|||-..++
T Consensus       625 ~Ngt~vtDl~WdPFD~~rLAVa~---------ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadv  692 (1012)
T KOG1445|consen  625 FNGTLVTDLHWDPFDDERLAVAT---------DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADV  692 (1012)
T ss_pred             ccCceeeecccCCCChHHeeecc---------cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhH
Confidence            45679999999999999999873         369999997653     3478999999875 89999999976554

>KOG0283|consensus

Probab=82.61  E-value=1.7  Score=44.99  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF  227 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~  227 (232)
                      +-=||||+|||..-..|+-|         .-||=|-||++...  +=-+-..++.-|++++|.|.
T Consensus       409 ndfVTcVaFnPvDDryFiSG---------SLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~Pd  462 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISG---------SLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPD  462 (712)
T ss_pred             CCeeEEEEecccCCCcEeec---------ccccceEEeecCcC--eeEeehhhhhhheeEEeccC
Confidence            33699999999998877643         35799999999995  45555667789999999996

>KOG0305|consensus

Probab=82.44  E-value=2.6  Score=41.89  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             CCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcCC
Q psy17341        193 PDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       193 ~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnLI  232 (232)
                      .|..|+||+...+  .|-+.|.. ...|-+++|||.+++||
T Consensus       321 nDN~~~Iwd~~~~--~p~~~~~~H~aAVKA~awcP~q~~lL  359 (484)
T KOG0305|consen  321 NDNVVFIWDGLSP--EPKFTFTEHTAAVKALAWCPWQSGLL  359 (484)
T ss_pred             CccceEeccCCCc--cccEEEeccceeeeEeeeCCCccCce
Confidence            5789999999775  45555544 57999999999999986

>KOG0271|consensus

Probab=81.75  E-value=2.7  Score=41.09  Aligned_cols=54  Identities=22%  Similarity=0.342  Sum_probs=38.6

Q ss_pred             CcceeEeecCCCCC--CeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEec
Q psy17341        163 NRNVTYMDWSTQHP--ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFA  225 (232)
Q Consensus       163 ~R~VT~IdWsP~~~--eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~Fs  225 (232)
                      .+-||+++|.|-|-  +--       ..+....+|-|.||+++..  .=.+.+.... +|+|++|-
T Consensus       200 ~K~It~Lawep~hl~p~~r-------~las~skDg~vrIWd~~~~--~~~~~lsgHT~~VTCvrwG  256 (480)
T KOG0271|consen  200 KKWITALAWEPLHLVPPCR-------RLASSSKDGSVRIWDTKLG--TCVRTLSGHTASVTCVRWG  256 (480)
T ss_pred             ccceeEEeecccccCCCcc-------ceecccCCCCEEEEEccCc--eEEEEeccCccceEEEEEc
Confidence            45799999999773  211       1112236899999999994  5677777655 99999984

>KOG0650|consensus

Probab=81.66  E-value=1.4  Score=44.99  Aligned_cols=59  Identities=15%  Similarity=0.193  Sum_probs=39.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEE-----e--CCCCCCCCceEEe-----CCCCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIW-----N--TKFKKTTPEFEFF-----CQSPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvW-----s--lk~pk~~PEyvf~-----~~S~V~~v~FsP~hPn  230 (232)
                      .++|++|++|+.|| |||+++-         +|.|.|+     |  ++||-..|--++.     -.-+|+.+.|||..|=
T Consensus       650 ~~avr~Va~H~ryP-Lfas~sd---------Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW  719 (733)
T KOG0650|consen  650 EKAVRSVAFHKRYP-LFASGSD---------DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW  719 (733)
T ss_pred             hhhhhhhhhccccc-eeeeecC---------CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence            46999999999999 7776643         3333333     2  4555455544443     3457999999999986


Q ss_pred             C
Q psy17341        231 Y  231 (232)
Q Consensus       231 L  231 (232)
                      |
T Consensus       720 L  720 (733)
T KOG0650|consen  720 L  720 (733)
T ss_pred             E
Confidence            5

>KOG0647|consensus

Probab=81.60  E-value=2.2  Score=40.47  Aligned_cols=58  Identities=24%  Similarity=0.440  Sum_probs=44.6

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCC-CCCCceEEeCCCCeEEEEecCC
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK-KTTPEFEFFCQSPVLSCCFAKF  227 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~p-k~~PEyvf~~~S~V~~v~FsP~  227 (232)
                      .-.-.|++|+|||+-..|++++         .-+|-|.+|.+.+. ..-|--...-+.+|+|++|+..
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~---------SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd   83 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAG---------SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD   83 (347)
T ss_pred             CcccchheeEeccccCceEEec---------ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC
Confidence            4556899999999666666543         25799999999982 1567666777899999999865

>KOG1036|consensus

Probab=80.85  E-value=1.8  Score=40.82  Aligned_cols=51  Identities=18%  Similarity=0.358  Sum_probs=33.3

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK  226 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP  226 (232)
                      +|.+|+|||.|. .||.         ...+|+|.+|++.+.|..=|+-=. +..|-++.|+-
T Consensus       234 PVNai~Fhp~~~-tfaT---------gGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~  284 (323)
T KOG1036|consen  234 PVNAIAFHPIHG-TFAT---------GGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSM  284 (323)
T ss_pred             EeceeEeccccc-eEEe---------cCCCceEEEccCcchhhhhhccCC-CCceEEEEecc
Confidence            799999999854 3332         236899999999997432222111 34577777763

>smart00320 WD40 WD40 repeats

Probab=80.45  E-value=3.5  Score=22.21  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEe
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN  201 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWs  201 (232)
                      ....|++++|+|.. .+++++-         .+|.|.+|+
T Consensus        11 ~~~~i~~~~~~~~~-~~~~~~~---------~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDG-KYLASAS---------DDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCC-CEEEEec---------CCCeEEEcC
Confidence            34589999999876 4444331         246778875

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0306|consensus

Probab=80.35  E-value=4.4  Score=42.46  Aligned_cols=54  Identities=26%  Similarity=0.311  Sum_probs=42.1

Q ss_pred             CCc-ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCC
Q psy17341        162 KNR-NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKF  227 (232)
Q Consensus       162 K~R-~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~  227 (232)
                      +.| .|||++=||.. .++||+|.         +|.|.||++-+.  -+-..|.-. ..|+|++|...
T Consensus        63 ~~k~evt~l~~~~d~-l~lAVGYa---------DGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~  118 (888)
T KOG0306|consen   63 KKKAEVTCLRSSDDI-LLLAVGYA---------DGSVQIFSLESE--EILITFNGHKAAVTTLKFDKI  118 (888)
T ss_pred             cccceEEEeeccCCc-ceEEEEec---------CceEEeeccCCC--ceeeeecccccceEEEEEccc
Confidence            455 89999988654 37799995         599999999984  566777554 48999999864

>KOG0303|consensus

Probab=80.30  E-value=2.8  Score=41.07  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=44.7

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCC------CCCCCceEEeCCC-CeEEEEecCCCCcCC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF------KKTTPEFEFFCQS-PVLSCCFAKFFFLYA  232 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~------pk~~PEyvf~~~S-~V~~v~FsP~hPnLI  232 (232)
                      -+|-+|+|+|++-..+|-+         ..+..|.||.+-.      + ..|--.|.-.+ .|--+.|||.-+|++
T Consensus        82 ~~vLDi~w~PfnD~vIASg---------SeD~~v~vW~IPe~~l~~~l-tepvv~L~gH~rrVg~V~wHPtA~NVL  147 (472)
T KOG0303|consen   82 APVLDIDWCPFNDCVIASG---------SEDTKVMVWQIPENGLTRDL-TEPVVELYGHQRRVGLVQWHPTAPNVL  147 (472)
T ss_pred             ccccccccCccCCceeecC---------CCCceEEEEECCCcccccCc-ccceEEEeecceeEEEEeecccchhhH
Confidence            4899999999988777532         2467899997654      3 56755666655 899999999999874

>KOG0270|consensus

Probab=80.20  E-value=5.4  Score=39.36  Aligned_cols=60  Identities=15%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      -++.|.+++|||.-|.+++-+         ..+|.|.+.+.+.| ++--..+...++|-.+.|+|+.||.
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsG---------s~D~~V~l~D~R~~-~~s~~~wk~~g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSG---------SYDGTVALKDCRDP-SNSGKEWKFDGEVEKVAWDPHSENS  344 (463)
T ss_pred             cCCceeEEEecCCCceEEEec---------cccceEEeeeccCc-cccCceEEeccceEEEEecCCCcee
Confidence            467899999999999877643         24689999999987 7777777778999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
3l9k_W	38	Insights Into Dynein Assembly From A Dynein Interme		4e-06

>pdb|3L9K|W Chain W, Insights Into Dynein Assembly From A Dynein Intermediate Cha Chain Roadblock Structure Length = 38

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 62 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 98
          LSE++K  I LSE FQ FV R GRV+ER L+E  D+Y
Sbjct: 1  LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIY 37

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3l9k_W	38	Dynein intermediate chain, cytosolic; LC7, light c	5e-10

>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster} Length = 38

 Score = 52.6 bits (126), Expect = 5e-10
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 62 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 98
          LSE++K  I LSE FQ FV R GRV+ER L+E  D+Y
Sbjct: 1  LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIY 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3l9k_W	38	Dynein intermediate chain, cytosolic; LC7, light c	99.42
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.99
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.09
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.87
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.81
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.79
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.75
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.73
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.71
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.63
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.53
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.42
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.4
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.39
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.32
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.22
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.21
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.17
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.13
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.08
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.05
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	95.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.9
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	95.84
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.83
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.82
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.81
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.77
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.76
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	95.73
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	95.71
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.69
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	95.65
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.64
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.52
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.49
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.49
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.34
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.31
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.27
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	95.24
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	95.24
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.17
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.16
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.11
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.06
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.06
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	95.02
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.99
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	94.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	94.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	94.91
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.8
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.8
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	94.79
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	94.64
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	94.64
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.62
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.56
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.55
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.53
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.51
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	94.5
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	94.43
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	94.42
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.41
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	94.39
2pm7_B	297	Protein transport protein SEC13, protein transport	94.36
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	94.32
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.09
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.01
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	93.99
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	93.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.92
3ow8_A	321	WD repeat-containing protein 61; structural genomi	93.9
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.88
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	93.83
3ow8_A	321	WD repeat-containing protein 61; structural genomi	93.82
2pm7_B	297	Protein transport protein SEC13, protein transport	93.77
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	93.76
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	93.71
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.67
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.64
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.43
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	93.37
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	93.32
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.31
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.25
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.24
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	93.22
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	93.22
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	93.2
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	93.13
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.06
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	92.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	92.87
3jro_A	753	Fusion protein of protein transport protein SEC13	92.56
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	92.37
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	91.28
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	91.24
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	91.08
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	90.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	90.82
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	90.74
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	90.61
3jro_A	753	Fusion protein of protein transport protein SEC13	90.45
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	90.29
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.28
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	90.15
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	90.13
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	89.69
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	88.71
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	87.19
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	86.13
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	85.78
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	84.68
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	84.42
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	84.08
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	80.63
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	80.5

>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}

Probab=99.42  E-value=1.2e-13  Score=90.64  Aligned_cols=38  Identities=58%  Similarity=0.899  Sum_probs=36.6

Q ss_pred             cCHHHHHhhccChhHHHHHHHHHHHHHHHhccCcchhc
Q psy17341         62 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYK   99 (232)
Q Consensus        62 Ls~Eek~~i~~S~~f~~F~~raski~ERaL~qn~Dif~   99 (232)
                      ||+|||++|+.|++|.+||+|++|||||||++++|||.
T Consensus         1 LseEEk~~I~~S~~F~~F~~rsskviERAL~e~yDi~~   38 (38)
T 3l9k_W            1 LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYT   38 (38)
T ss_dssp             CCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CCHHHHHHHhcCHHHHHHHHHHHHHHHHHHcccccccC
Confidence            79999999999999999999999999999999999974

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.99  E-value=5.6e-06  Score=73.67  Aligned_cols=61  Identities=20%  Similarity=0.336  Sum_probs=47.2

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceE-Ee-CCCCeEEEEecCCCCcCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FF-CQSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyv-f~-~~S~V~~v~FsP~hPnLI  232 (232)
                      -.+.||||+|||..+.|||++-         .+|.|.||++... ..+..+ +. -...|+|++|+|.++++|
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs---------~dg~i~lWd~~~~-~~~~~~~~~gH~~~V~~l~f~p~~~~~l  180 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGS---------KGGDIMLWNFGIK-DKPTFIKGIGAGGSITGLKFNPLNTNQF  180 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEE---------TTSCEEEECSSCC-SCCEEECCCSSSCCCCEEEECSSCTTEE
T ss_pred             CCCCEEEEEEeCCCCCEEEEEe---------CCCEEEEEECCCC-CceeEEEccCCCCCEEEEEEeCCCCCEE
Confidence            3567999999999999998873         4699999999876 444333 33 256899999999888753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.09  E-value=0.00095  Score=55.16  Aligned_cols=59  Identities=15%  Similarity=0.188  Sum_probs=44.7

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC---CCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK---TTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk---~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ..|++|+|+|..+.+||.+         ..||.|.||++...+   ..|...+.. ...|.+++|+|....|
T Consensus        39 ~~V~~v~~sp~~~~~l~S~---------s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l  101 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSA---------SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA  101 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEE---------ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCEEEEEEeCCCCCEEEEE---------cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE
Confidence            4899999999999988765         136899999987641   224555655 4699999999976544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.91  E-value=0.0028  Score=56.23  Aligned_cols=60  Identities=8%  Similarity=0.154  Sum_probs=50.0

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|..+.++|++.         .+|.|.||++... ..|-..+.. ...|.+++|+|..+++
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~---------~dg~v~vwd~~~~-~~~~~~~~~h~~~v~~i~~sp~~~~~  336 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGS---------ADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETI  336 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEE---------TTSEEEEEETTCT-TSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             CCCCeEEEEeCCCCCCEEEEEe---------CCCeEEEEeCCCC-CCCeEEeecCCCCEEEEEECCCCCCE
Confidence            3467999999999888887763         3689999999997 678888885 5699999999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.87  E-value=0.0027  Score=55.06  Aligned_cols=60  Identities=10%  Similarity=0.141  Sum_probs=47.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCC-----CCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-----TPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~-----~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|....+||++.         .+|.|.||++.....     .|...+.. ...|.+++|+|..+++
T Consensus        81 ~~~V~~~~~~p~~~~~l~s~s---------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  146 (402)
T 2aq5_A           81 TAPVLDIAWCPHNDNVIASGS---------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV  146 (402)
T ss_dssp             SSCEEEEEECTTCTTEEEEEE---------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTE
T ss_pred             CCCEEEEEeCCCCCCEEEEEe---------CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCE
Confidence            458999999998788888763         358999999988511     57777775 4699999999997654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.81  E-value=0.0034  Score=55.63  Aligned_cols=61  Identities=18%  Similarity=0.296  Sum_probs=48.7

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC-CCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-TTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk-~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|....+||++.         .+|.|.||++...+ ..|...+.. .++|.|++|+|..+++
T Consensus       230 h~~~v~~v~~~p~~~~~l~s~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  292 (430)
T 2xyi_A          230 HTAVVEDVAWHLLHESLFGSVA---------DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI  292 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEE---------TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             CCCCEeeeEEeCCCCCEEEEEe---------CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCE
Confidence            3457999999999888988764         35899999999751 257777755 5799999999998874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.79  E-value=0.002  Score=53.38  Aligned_cols=61  Identities=13%  Similarity=0.113  Sum_probs=46.0

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFF  228 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~h  228 (232)
                      -...|++|+|+|..+.|++++-..      ..+|.|.||++...+..+...+....+|.|++|+|..
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~------~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~   77 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFA------RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS   77 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--------CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCC
T ss_pred             CCCceEEEEEcCCCceEEEecCcc------CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCC
Confidence            456899999999888887765321      1379999999998633334555667899999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.75  E-value=0.0031  Score=54.92  Aligned_cols=61  Identities=18%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|..+.|++++-|.       .+|.|.+|++...  .+...+...+.|.+++|+|....|
T Consensus       258 ~~~~v~~~~~~p~~~~ll~~~~gs-------~d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~s~~~~~l  318 (401)
T 4aez_A          258 HNAAVKAVAWCPWQSNLLATGGGT-------MDKQIHFWNAATG--ARVNTVDAGSQVTSLIWSPHSKEI  318 (401)
T ss_dssp             CSSCCCEEEECTTSTTEEEEECCT-------TTCEEEEEETTTC--CEEEEEECSSCEEEEEECSSSSEE
T ss_pred             CcceEEEEEECCCCCCEEEEecCC-------CCCEEEEEECCCC--CEEEEEeCCCcEEEEEECCCCCeE
Confidence            456899999999989999887654       3699999999974  688899999999999999987765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.73  E-value=0.0039  Score=52.48  Aligned_cols=59  Identities=10%  Similarity=0.104  Sum_probs=44.4

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe--------------CCCCeEEEEecCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--------------CQSPVLSCCFAKF  227 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~--------------~~S~V~~v~FsP~  227 (232)
                      -...|++|+|+|....+||++-         .+|.|.||++....  ....+.              ....|++++|+|.
T Consensus        42 h~~~v~~~~~s~~~~~~l~~~~---------~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRYMLSGG---------SDGVIVLYDLENSS--RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             CSSCEEEEEECTTTCCEEEEEE---------TTSCEEEEECCCCS--SSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             cCCcEEEEEEecCCCCEEEEEc---------CCCeEEEEECCCCc--ccceEeccccccccccccccCCCcEEEEEEccC
Confidence            3469999999997777777653         25899999999862  333332              5679999999997


Q ss_pred             CCcC
Q psy17341        228 FFLY  231 (232)
Q Consensus       228 hPnL  231 (232)
                      .+++
T Consensus       111 ~~~~  114 (408)
T 4a11_B          111 DTGM  114 (408)
T ss_dssp             CTTC
T ss_pred             CCcE
Confidence            7654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.71  E-value=0.0018  Score=56.35  Aligned_cols=59  Identities=12%  Similarity=0.128  Sum_probs=44.6

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|....+||.+-         .+|.|.||++...  .+-..+.-...|++++|||.++++
T Consensus       268 ~~~~v~~l~~sp~~~~~lasgs---------~D~~i~iwd~~~~--~~~~~~~H~~~V~~vafsP~d~~~  326 (357)
T 4g56_B          268 HSQNITGLAYSYHSSPFLASIS---------EDCTVAVLDADFS--EVFRDLSHRDFVTGVAWSPLDHSK  326 (357)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEE---------TTSCEEEECTTSC--EEEEECCCSSCEEEEEECSSSTTE
T ss_pred             cceeEEEEEEcCCCCCEEEEEe---------CCCEEEEEECCCC--cEeEECCCCCCEEEEEEeCCCCCE
Confidence            3468999999998877776542         3689999999874  344444446799999999987664

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.63  E-value=0.0036  Score=51.17  Aligned_cols=52  Identities=15%  Similarity=0.216  Sum_probs=39.3

Q ss_pred             eeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC--C-CCeEEEEecCCCCcC
Q psy17341        166 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC--Q-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       166 VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~--~-S~V~~v~FsP~hPnL  231 (232)
                      +.+|+|||.+  +||||.          +|.|.||++...  ....++..  + ..|+|++|+|....|
T Consensus        28 ~~~l~WS~~~--~lAvg~----------D~tV~iWd~~tg--~~~~~~~~~~~~~~V~~v~~~~~~~~l   82 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVAL----------DNSVYLWSASSG--DILQLLQMEQPGEYISSVAWIKEGNYL   82 (318)
T ss_dssp             CBCEEECTTS--EEEEEE----------TTEEEEEETTTC--CEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred             ceEEEECCCC--EEEEEe----------CCEEEEEECCCC--CEEEEEEecCCCCeEEEEEECCCCCEE
Confidence            4679999874  898863          478999999874  45566543  3 369999999987654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0022  Score=54.72  Aligned_cols=66  Identities=14%  Similarity=0.160  Sum_probs=48.8

Q ss_pred             ceeEeecCCCCCCeEEEE-eccCCCCCCCCCcEEEEEeCCCCCC--CCceEEeCCCCeEEEEecCCCCcC
Q psy17341        165 NVTYMDWSTQHPELLLAS-YHRNKEAPNEPDGVCLIWNTKFKKT--TPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVS-Ygs~~~~~~~~~GlVlvWslk~pk~--~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      .|++++|||....++|++ +.......-..+|.|.||++... .  .|...+.....|.|++|+|....|
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l   82 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA-DSEKPIASLQVDSKFNDLDWSHNNKII   82 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG-GGCSCSCCCCCSSCEEEEEECSSSSCE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC-CCCcEEEEEecCCceEEEEECCCCCeE
Confidence            689999999987788876 32221112246799999999875 3  366677778899999999976544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.42  E-value=0.0052  Score=52.48  Aligned_cols=57  Identities=18%  Similarity=0.360  Sum_probs=44.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe---CCCCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF---CQSPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~---~~S~V~~v~FsP~hPn  230 (232)
                      ...|++|+|+|..+.+||++..         +|.|.||++...  .....+.   ....|.+++|+|.+.+
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~  132 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSK---------GGDIILWDYDVQ--NKTSFIQGMGPGDAITGMKFNQFNTN  132 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEB---------TSCEEEEETTST--TCEEEECCCSTTCBEEEEEEETTEEE
T ss_pred             CCCEEEEEECCCCCCEEEEEcC---------CCeEEEEeCCCc--ccceeeecCCcCCceeEEEeCCCCCC
Confidence            4689999999998778877642         589999999975  3555554   4679999999996544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.40  E-value=0.011  Score=51.71  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      .+..|++++|+|....+||++.         .+|.|.||+++..  .+.+.|... ..|.+++|+|...++
T Consensus       213 ~~~~~~~~~~~p~~~~~l~sg~---------~dg~v~~wd~~~~--~~~~~~~~h~~~v~~v~fsp~g~~~  272 (344)
T 4gqb_B          213 PGYLPTSLAWHPQQSEVFVFGD---------ENGTVSLVDTKST--SCVLSSAVHSQCVTGLVFSPHSVPF  272 (344)
T ss_dssp             -CCCEEEEEECSSCTTEEEEEE---------TTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCC
T ss_pred             eeccceeeeecCCCCcceEEec---------cCCcEEEEECCCC--cEEEEEcCCCCCEEEEEEccCCCeE
Confidence            3456999999999988888763         3689999999985  577888764 589999999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.39  E-value=0.0038  Score=52.58  Aligned_cols=58  Identities=17%  Similarity=0.087  Sum_probs=43.3

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|..+-|+.++          .+|.|.||++... ..+...+... ..|+|++|+|.++++
T Consensus        97 ~~~v~~~~~~~~~~~l~sgs----------~D~~v~lWd~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           97 PDYIRSIAVHPTKPYVLSGS----------DDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             SSCEEEEEECSSSSEEEEEE----------TTSCEEEEEGGGT-TEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             CCcEEEEEEcCCCCEEEEEC----------CCCeEEEEECCCC-cchhhhhcccCCcEEEEEECCCCCCE
Confidence            35799999999865333222          3689999999875 4566677654 589999999987764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.0065  Score=51.74  Aligned_cols=62  Identities=16%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe--CCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~--~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|..+.+++++....      ..|.|.+|++... ..|...+.  -...|++++|+|...++
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~------~~~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~  277 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSD------NDPSILIWDLRNA-NTPLQTLNQGHQKGILSLDWCHQDEHL  277 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCS------SSCCCCEEETTST-TSCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred             CCceEEEEECCCCCCEEEEEECCC------CCceEEEEeCCCC-CCCcEEeecCccCceeEEEeCCCCCCe
Confidence            578999999999888888775432      2358999999986 67888887  45799999999965544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.22  E-value=0.0089  Score=49.49  Aligned_cols=59  Identities=20%  Similarity=0.247  Sum_probs=45.3

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEE----eCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf----~~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|....+||++.         .+|.|.||++...  .+...+    .....|++++|+|....|
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l  176 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVS---------KDHALRLWNIQTD--TLVAIFGGVEGHRDEVLSADYDLLGEKI  176 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEE---------TTSCEEEEETTTT--EEEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred             CCCcEEEEEECCCCCCEEEEEe---------CCCeEEEEEeecC--eEEEEecccccccCceeEEEECCCCCEE
Confidence            4568999999997777777653         2689999999874  466666    346799999999965443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.21  E-value=0.0073  Score=52.50  Aligned_cols=58  Identities=9%  Similarity=0.093  Sum_probs=46.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|....+||++.         .+|.|.||+++.+  .+...+... ..|.+++|+|...++
T Consensus       226 ~~~v~~v~~sp~~~~~la~g~---------~d~~i~~wd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~  284 (357)
T 4g56_B          226 DTIPTSVTWHPEKDDTFACGD---------ETGNVSLVNIKNP--DSAQTSAVHSQNITGLAYSYHSSPF  284 (357)
T ss_dssp             CSCEEEEEECTTSTTEEEEEE---------SSSCEEEEESSCG--GGCEEECCCSSCEEEEEECSSSSCC
T ss_pred             cccccchhhhhcccceEEEee---------cccceeEEECCCC--cEeEEEeccceeEEEEEEcCCCCCE
Confidence            456999999999888888763         3588999999986  466667654 589999999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.17  E-value=0.0074  Score=52.80  Aligned_cols=58  Identities=12%  Similarity=0.085  Sum_probs=43.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnLI  232 (232)
                      ...|++|+|||....+||.+-         .+|.|.||++...   ..+.+.. ...|++++|||..++||
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs---------~D~~i~vwd~~~~---~~~~~~~H~~~V~~v~~sp~~~~ll  315 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLS---------EDCSLAVLDSSLS---ELFRSQAHRDFVRDATWSPLNHSLL  315 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEE---------TTSCEEEECTTCC---EEEEECCCSSCEEEEEECSSSTTEE
T ss_pred             CCCEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCC---cEEEEcCCCCCEEEEEEeCCCCeEE
Confidence            458999999998777776542         3689999998764   2334444 46899999999988764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.13  E-value=0.012  Score=48.59  Aligned_cols=61  Identities=15%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             CCcceeEeecCCCC--CCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe-CCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQH--PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~--~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~-~~S~V~~v~FsP~hPnL  231 (232)
                      -...|+||+|+|..  ..+||++-         .+|.|.||++..........+. ....|.+++|+|....|
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGS---------WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEE---------TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEEC---------CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence            45689999999987  56666652         3589999999974122324444 46799999999965544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.08  E-value=0.0025  Score=56.12  Aligned_cols=59  Identities=20%  Similarity=0.107  Sum_probs=42.8

Q ss_pred             cceeEeecCCCCC------CeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHP------ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~------eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      -.|++|+|+|.+.      +-++||-+        .||.|.||++... .....++.-.++|++++|+|..+++
T Consensus       137 ~~v~~v~~~p~~~~~~~~d~~~las~s--------~D~tv~~Wd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~  201 (393)
T 4gq1_A          137 NFVNDIDIADVYSADNRLAEQVIASVG--------DDCTLIIWRLTDE-GPILAGYPLSSPGISVQFRPSNPNQ  201 (393)
T ss_dssp             SCEEEEEEEEEECTTCSEEEEEEEEEE--------TTSEEEEEEEETT-EEEEEEEECSSCEEEEEEETTEEEE
T ss_pred             CceEEEEEccccccccCCCCCEEEEEE--------CCCeEEEEECCCC-ceeeeecCCCCCcEEEEECCCCCce
Confidence            4799999998543      22333333        3689999999875 3344556668899999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.07  E-value=0.014  Score=48.28  Aligned_cols=59  Identities=14%  Similarity=0.045  Sum_probs=44.8

Q ss_pred             CCcceeEeecCCCCC---CeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe-CCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHP---ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~---eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~-~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++++|+|...   .+||++.         .+|.|.||++...  .+...+. ...+|.+++|+|.++++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~---------~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~  130 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAG---------SRGIIRIINPITM--QCIKHYVGHGNAINELKFHPRDPNL  130 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEE---------TTCEEEEECTTTC--CEEEEEESCCSCEEEEEECSSCTTE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEec---------CCCEEEEEEchhc--eEeeeecCCCCcEEEEEECCCCCCE
Confidence            446799999999865   3565553         3589999999874  5677777 46699999999966654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.05  E-value=0.012  Score=50.26  Aligned_cols=59  Identities=19%  Similarity=0.189  Sum_probs=45.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC--CCCceEEeCCCCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFFCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk--~~PEyvf~~~S~V~~v~FsP~hPn  230 (232)
                      ...|++|+|+|..+.+|+++-         .+|.|.||++...+  ..+...+.....|++++|+|.+.+
T Consensus       204 ~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  264 (383)
T 3ei3_B          204 KAKVTHAEFNPRCDWLMATSS---------VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST  264 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEE---------TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC
T ss_pred             CCcEEEEEECCCCCCEEEEEe---------CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC
Confidence            468999999998887777652         36899999998742  245666777889999999994443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.04  E-value=0.014  Score=51.19  Aligned_cols=61  Identities=16%  Similarity=0.150  Sum_probs=52.0

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++++|+|..+.+++++-|+.       +|.|.||++...  .+...+.....|.++.|+|....|
T Consensus       275 ~~~~V~~~~~~p~~~~~la~~~gs~-------D~~I~iwd~~t~--~~~~~~~~~~~v~~~~~~~~~~~l  335 (420)
T 4gga_A          275 HQGAVKAVAWCPWQSNVLATGGGTS-------DRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKEL  335 (420)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEECTT-------TCEEEEEETTTT--EEEEEEECSSCEEEEEEETTTTEE
T ss_pred             cCCceeeeeeCCCcccEEEEEeecC-------CCEEEEEeCCcc--ccceeeccccceeeeeecCCCCeE
Confidence            3457999999999999999877653       699999999984  688889999999999999987654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.96  E-value=0.017  Score=48.52  Aligned_cols=60  Identities=13%  Similarity=0.255  Sum_probs=45.7

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEE----------------eCCCCeEEEEec
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----------------FCQSPVLSCCFA  225 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf----------------~~~S~V~~v~Fs  225 (232)
                      ....|++|+|+|..+-+|+++.         .+|.|.+|++... ..+-..+                .....|.+++|+
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~---------~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATAS---------ADSRVKLWDVRRA-SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEE---------TTSCEEEEETTCS-SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             CCCcEEEEEECCCCCcEEEEEc---------CCCcEEEEECCCC-CcccccccccccccceeeccccccccCceeEEEEc
Confidence            3468999999999888777764         3589999999886 5555554                235689999999


Q ss_pred             CCCCcC
Q psy17341        226 KFFFLY  231 (232)
Q Consensus       226 P~hPnL  231 (232)
                      |....|
T Consensus       255 ~~~~~l  260 (408)
T 4a11_B          255 SDGLHL  260 (408)
T ss_dssp             TTSSEE
T ss_pred             CCCCEE
Confidence            976544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=95.96  E-value=0.012  Score=47.63  Aligned_cols=55  Identities=7%  Similarity=0.011  Sum_probs=38.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCC--CCceEEeC-CCCeEEEEecCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--TPEFEFFC-QSPVLSCCFAKF  227 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~--~PEyvf~~-~S~V~~v~FsP~  227 (232)
                      ...|++|+|+|.- .+||++-         .+|.|.||++.....  .+...+.. ..+|+|++|+|.
T Consensus        11 ~~~v~~~~~~~~~-~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   68 (351)
T 3f3f_A           11 DDLVHDVVYDFYG-RHVATCS---------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP   68 (351)
T ss_dssp             SSCEEEEEECSSS-SEEEEEE---------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCG
T ss_pred             ccceeEEEEcCCC-CEEEEee---------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCC
Confidence            4589999999954 4555542         369999999987411  23344443 569999999995

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.01  Score=51.53  Aligned_cols=59  Identities=22%  Similarity=0.283  Sum_probs=44.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCC---CC-CCCceEEeCCCCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF---KK-TTPEFEFFCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~---pk-~~PEyvf~~~S~V~~v~FsP~hPn  230 (232)
                      ...|++|+|+|....+||.+-         .+|.|.||++..   .. ..+...+....+|+|++|+|....
T Consensus        63 ~~~V~~~~~s~~~~~~l~s~s---------~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  125 (437)
T 3gre_A           63 PNSITSSAVSPGETPYLITGS---------DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDA  125 (437)
T ss_dssp             TSCEEEEEEECSSSCEEEEEE---------TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSE
T ss_pred             CCceEEEEECCCCCCEEEEec---------CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCE
Confidence            368999999996666776653         469999999865   21 346777777899999999996543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=95.84  E-value=0.027  Score=48.02  Aligned_cols=56  Identities=23%  Similarity=0.240  Sum_probs=43.4

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFF  229 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hP  229 (232)
                      ...|++|+|+|.-. +||++-         .+|.|.||++... ..|...+.....|.+++|+|...
T Consensus       213 ~~~v~~~~~s~~g~-~l~sgs---------~dg~v~iwd~~~~-~~~~~~~~~~~~v~~v~~sp~~~  268 (343)
T 2xzm_R          213 ESNVNHLSISPNGK-YIATGG---------KDKKLLIWDILNL-TYPQREFDAGSTINQIAFNPKLQ  268 (343)
T ss_dssp             SSCEEEEEECTTSS-EEEEEE---------TTCEEEEEESSCC-SSCSEEEECSSCEEEEEECSSSC
T ss_pred             cccceEEEECCCCC-EEEEEc---------CCCeEEEEECCCC-cccceeecCCCcEEEEEECCCCC
Confidence            34799999998644 343321         3699999999775 67888887788999999999754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.03  Score=46.55  Aligned_cols=57  Identities=23%  Similarity=0.234  Sum_probs=42.4

Q ss_pred             CCcceeEeecCCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe-CCCCeEEEEecCC
Q psy17341        162 KNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKF  227 (232)
Q Consensus       162 K~R~VT~IdWsP~~-~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~-~~S~V~~v~FsP~  227 (232)
                      ....|++|+|+|.. ..+|+++.         .+|.|.+|++......+...+. ....|++++|+|.
T Consensus       100 ~~~~v~~~~~~~~~~~~~l~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A          100 HSASVNSVQWAPHEYGPLLLVAS---------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEE---------TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             CCcceEEEEeCCCCCCCEEEEec---------CCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            35689999999985 56666663         3689999999886333444444 4569999999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.82  E-value=0.018  Score=46.93  Aligned_cols=61  Identities=20%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      .....|.++.|+|....+++++-+        .+|.|.||++...  .+...|.. ...|+|++|+|....|
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~~sg~--------~d~~i~iwd~~~~--~~~~~l~gH~~~V~~l~~spdg~~l  299 (318)
T 4ggc_A          238 DAHSQVCSILWSPHYKELISGHGF--------AQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGATV  299 (318)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEECT--------TTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             cceeeeeeeeecccccceEEEEEc--------CCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            455679999999999888876522        3689999999874  68888877 4699999999987655

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.017  Score=49.18  Aligned_cols=58  Identities=16%  Similarity=0.136  Sum_probs=43.1

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC--CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC--QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~--~S~V~~v~FsP~hPnL  231 (232)
                      +..|++++|+|. ..+||++-         .+|.|.||++... ..+...|..  ..+|++++|+|....|
T Consensus       170 ~~~i~~~~~~pd-g~~lasg~---------~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~fs~~g~~l  229 (343)
T 3lrv_A          170 DVEYSSGVLHKD-SLLLALYS---------PDGILDVYNLSSP-DQASSRFPVDEEAKIKEVKFADNGYWM  229 (343)
T ss_dssp             SCCCCEEEECTT-SCEEEEEC---------TTSCEEEEESSCT-TSCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred             CCceEEEEECCC-CCEEEEEc---------CCCEEEEEECCCC-CCCccEEeccCCCCEEEEEEeCCCCEE
Confidence            346999999995 34555541         4699999999986 444366666  6799999999976544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.011  Score=49.74  Aligned_cols=60  Identities=12%  Similarity=0.017  Sum_probs=41.8

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeC----CCCCCC-----CceEEeC-----------CCCeEE
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNT----KFKKTT-----PEFEFFC-----------QSPVLS  221 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWsl----k~pk~~-----PEyvf~~-----------~S~V~~  221 (232)
                      ....|++|+|+|.-+.+||++-         .+|.|.||++    ... ..     +...+..           ...|+|
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGE---------KNSVARLARIVETDQEG-KKYWKLTIIAELRHPFALSASSGKTTNQVTC  113 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEE---------TBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred             ccCceEEEEECCCCCcEEEEec---------CCceEEEEEEecccCCc-cccccccccccccccccccccccCCCCceEE
Confidence            3458999999998877777663         3589999999    765 32     4555554           449999


Q ss_pred             EEecCCCCcC
Q psy17341        222 CCFAKFFFLY  231 (232)
Q Consensus       222 v~FsP~hPnL  231 (232)
                      ++|+|....|
T Consensus       114 ~~~s~~~~~l  123 (425)
T 1r5m_A          114 LAWSHDGNSI  123 (425)
T ss_dssp             EEECTTSSEE
T ss_pred             EEEcCCCCEE
Confidence            9999965443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.022  Score=47.04  Aligned_cols=57  Identities=11%  Similarity=0.078  Sum_probs=44.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|.- .+||++-         .+|.|.||++...  .+...+....+|.++.|+|....|
T Consensus        74 ~~~v~~~~~~~~~-~~l~s~~---------~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l  130 (369)
T 3zwl_B           74 TGTIWSIDVDCFT-KYCVTGS---------ADYSIKLWDVSNG--QCVATWKSPVPVKRVEFSPCGNYF  130 (369)
T ss_dssp             SSCEEEEEECTTS-SEEEEEE---------TTTEEEEEETTTC--CEEEEEECSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEEEcCCC-CEEEEEe---------CCCeEEEEECCCC--cEEEEeecCCCeEEEEEccCCCEE
Confidence            4579999999954 4555432         2689999999884  688888889999999999986654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=95.73  E-value=0.026  Score=48.64  Aligned_cols=60  Identities=8%  Similarity=0.022  Sum_probs=44.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC--CCCceEEeCCC-------------CeEEEEecCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFFCQS-------------PVLSCCFAKF  227 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk--~~PEyvf~~~S-------------~V~~v~FsP~  227 (232)
                      ...|++|+|+|..+.+||++-         .+|.|.||++...+  ..+-.+|..+.             .|.+++|+|.
T Consensus       226 ~~~v~~~~~~p~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (447)
T 3dw8_B          226 TEVITAAEFHPNSCNTFVYSS---------SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS  296 (447)
T ss_dssp             CCCEEEEEECSSCTTEEEEEE---------TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred             CcceEEEEECCCCCcEEEEEe---------CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC
Confidence            456999999999877777654         36899999998851  11257777765             8999999997


Q ss_pred             CCcC
Q psy17341        228 FFLY  231 (232)
Q Consensus       228 hPnL  231 (232)
                      ...|
T Consensus       297 g~~l  300 (447)
T 3dw8_B          297 GRYM  300 (447)
T ss_dssp             SSEE
T ss_pred             CCEE
Confidence            6544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=95.71  E-value=0.016  Score=49.99  Aligned_cols=57  Identities=11%  Similarity=0.134  Sum_probs=40.6

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCC----------CceEEeCC-------------C
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT----------PEFEFFCQ-------------S  217 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~----------PEyvf~~~-------------S  217 (232)
                      .....|++|+|||. ..+||++-         .+|.|.||++... ..          +...+...             .
T Consensus        26 ~~~~~V~~v~~s~~-g~~la~g~---------~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~   94 (447)
T 3dw8_B           26 AEADIISTVEFNHS-GELLATGD---------KGGRVVIFQQEQE-NKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEE   94 (447)
T ss_dssp             CGGGSEEEEEECSS-SSEEEEEE---------TTSEEEEEEECC------CCCCCCEEEEEEEECCCCEEEGGGTEEECC
T ss_pred             cccCcEEEEEECCC-CCEEEEEc---------CCCeEEEEEecCC-CCCCcccccceeEecccccccccccccccccccC
Confidence            44679999999994 45666542         3699999999875 21          24455554             7


Q ss_pred             CeEEEEecCCC
Q psy17341        218 PVLSCCFAKFF  228 (232)
Q Consensus       218 ~V~~v~FsP~h  228 (232)
                      .|++++|+|..
T Consensus        95 ~V~~l~~~~~~  105 (447)
T 3dw8_B           95 KINKIRWLPQK  105 (447)
T ss_dssp             CCCEEEECCCC
T ss_pred             ceEEEEEcCCC
Confidence            79999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.69  E-value=0.0095  Score=54.09  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=42.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe-CCCCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~-~~S~V~~v~FsP~hPn  230 (232)
                      ...|++|+|||..+.+||++-         .+|.|.||+++.. . ...... ....|.|++|||.--.
T Consensus       149 ~~~V~~v~~~p~~~~~las~s---------~Dg~v~iwD~~~~-~-~~~~~~~~~~~v~~v~wspdg~~  206 (434)
T 2oit_A          149 GGMVIDMKWNPTVPSMVAVCL---------ADGSIAVLQVTET-V-KVCATLPSTVAVTSVCWSPKGKQ  206 (434)
T ss_dssp             GGSEEEEEECSSCTTEEEEEE---------TTSCEEEEEESSS-E-EEEEEECGGGCEEEEEECTTSSC
T ss_pred             CCceEEEEECCCCCCEEEEEE---------CCCeEEEEEcCCC-c-ceeeccCCCCceeEEEEcCCCCE
Confidence            457999999999888888764         2589999999885 2 222222 2568999999997433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=95.65  E-value=0.014  Score=47.24  Aligned_cols=58  Identities=12%  Similarity=0.267  Sum_probs=42.5

Q ss_pred             CCcceeEeecCCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCC-------CCceEEeC-CCCeEEEEecCCC
Q psy17341        162 KNRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-------TPEFEFFC-QSPVLSCCFAKFF  228 (232)
Q Consensus       162 K~R~VT~IdWsP~-~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~-------~PEyvf~~-~S~V~~v~FsP~h  228 (232)
                      ....|++|+|+|. ...+|+++.         .+|.|.||++.....       .+...+.. ...|.+++|+|.+
T Consensus        56 ~~~~v~~~~~~~~~d~~~l~s~~---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  122 (351)
T 3f3f_A           56 HDSSIVAIDWASPEYGRIIASAS---------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH  122 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEE---------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG
T ss_pred             CCCcEEEEEEcCCCCCCEEEEEc---------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCC
Confidence            4568999999997 567777653         368999999987411       33445544 5689999999983

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.64  E-value=0.02  Score=47.29  Aligned_cols=55  Identities=20%  Similarity=0.333  Sum_probs=42.0

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      .|++|+|+|... +||++-         .+|.|.||++...  .+...+.. ..+|.+++|+|....|
T Consensus       275 ~v~~~~~sp~~~-~l~s~~---------~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l  330 (368)
T 3mmy_A          275 AVNGIAFHPVHG-TLATVG---------SDGRFSFWDKDAR--TKLKTSEQLDQPISACCFNHNGNIF  330 (368)
T ss_dssp             CEEEEEECTTTC-CEEEEE---------TTSCEEEEETTTT--EEEEECCCCSSCEEEEEECTTSSCE
T ss_pred             ceEEEEEecCCC-EEEEEc---------cCCeEEEEECCCC--cEEEEecCCCCCceEEEECCCCCeE
Confidence            699999999654 444442         3689999999974  56666665 5699999999987655

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.53  E-value=0.025  Score=47.91  Aligned_cols=57  Identities=19%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-------CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-------QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-------~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|..  +|+++.         .+|.|.+|++...  .+...+..       ..+|.+++|+|....|
T Consensus       185 ~~~~i~~~~~~~~~--~l~~~~---------~dg~i~i~d~~~~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l  248 (397)
T 1sq9_A          185 PSQFATSVDISERG--LIATGF---------NNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLL  248 (397)
T ss_dssp             SCCCCCEEEECTTS--EEEEEC---------TTSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             CCCCceEEEECCCc--eEEEEe---------CCCcEEEEECCCC--ceeEEEeccccccccCCccceEEECCCCCEE
Confidence            36679999999977  666653         3689999999874  68888887       7899999999975443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.52  E-value=0.019  Score=47.42  Aligned_cols=61  Identities=15%  Similarity=0.105  Sum_probs=45.2

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCC------------------ceEEeC-CCCeEE
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP------------------EFEFFC-QSPVLS  221 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~P------------------Eyvf~~-~S~V~~  221 (232)
                      .....|++|+|+|..+.+|+++-         .+|.|.||++..+ ..+                  ...+.. ...|.+
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAG---------GAGGLHLWKYEYP-IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEE---------TTSEEEEEEEECC-SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             CCcCCEEEEEECCCCCcEEEEEe---------CCCcEEEeecCCC-cccccccCCCCccccccccceeeccccCCCCeeE
Confidence            34568999999998776777653         3689999999876 333                  233443 458999


Q ss_pred             EEecCCCCcC
Q psy17341        222 CCFAKFFFLY  231 (232)
Q Consensus       222 v~FsP~hPnL  231 (232)
                      ++|+|....|
T Consensus       327 ~~~s~~~~~l  336 (357)
T 3i2n_A          327 LDWSPDKRGL  336 (357)
T ss_dssp             EEECSSSTTE
T ss_pred             EEEcCCCCeE
Confidence            9999987765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.49  E-value=0.034  Score=47.56  Aligned_cols=58  Identities=14%  Similarity=0.072  Sum_probs=42.4

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      -...|++|+|+|... +||++-         .+|.|.||++...  .+...+.. ...|++++|+|....|
T Consensus       138 h~~~v~~~~~~~~~~-~l~s~s---------~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l  196 (420)
T 3vl1_A          138 HVSEITKLKFFPSGE-ALISSS---------QDMQLKIWSVKDG--SNPRTLIGHRATVTDIAIIDRGRNV  196 (420)
T ss_dssp             SSSCEEEEEECTTSS-EEEEEE---------TTSEEEEEETTTC--CCCEEEECCSSCEEEEEEETTTTEE
T ss_pred             ccCccEEEEECCCCC-EEEEEe---------CCCeEEEEeCCCC--cCceEEcCCCCcEEEEEEcCCCCEE
Confidence            346899999999744 444432         3689999999885  45555654 5699999999976544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.49  E-value=0.016  Score=49.02  Aligned_cols=53  Identities=11%  Similarity=0.252  Sum_probs=40.0

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCC-----CCceEEe-CCCCeEEEEecCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-----TPEFEFF-CQSPVLSCCFAKF  227 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~-----~PEyvf~-~~S~V~~v~FsP~  227 (232)
                      -...|++|+|+|   .+||++-         .+|.|.||++... .     .+...+. ...+|+|++|+|.
T Consensus        15 h~~~i~~~~~~~---~~l~s~~---------~dg~i~iw~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~   73 (397)
T 1sq9_A           15 HDADIFSVSACN---SFTVSCS---------GDGYLKVWDNKLL-DNENPKDKSYSHFVHKSGLHHVDVLQA   73 (397)
T ss_dssp             SSSCEEEEEECS---SEEEEEE---------TTSEEEEEESBCC-TTCCGGGGEEEEECCTTCEEEEEEEEE
T ss_pred             hhcCeEEEEecC---CeEEEEc---------CCCEEEEEECCCc-ccccCCCcceEEecCCCcEEEEEEecc
Confidence            345999999998   6777662         3689999999886 3     1344444 4579999999987

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.043  Score=45.21  Aligned_cols=58  Identities=9%  Similarity=0.140  Sum_probs=45.7

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|... +|+++.         .+|.|.+|++...  .+...+....+|.++.|+|....|
T Consensus       217 ~~~~v~~~~~~~~~~-~l~~~~---------~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~l  274 (369)
T 3zwl_B          217 HEKSISDMQFSPDLT-YFITSS---------RDTNSFLVDVSTL--QVLKKYETDCPLNTAVITPLKEFI  274 (369)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEE---------TTSEEEEEETTTC--CEEEEEECSSCEEEEEECSSSSEE
T ss_pred             CCCceeEEEECCCCC-EEEEec---------CCceEEEEECCCC--ceeeeecCCCCceeEEecCCCceE
Confidence            356899999999644 444442         3689999999984  688888889999999999987754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.31  E-value=0.012  Score=52.08  Aligned_cols=60  Identities=18%  Similarity=0.251  Sum_probs=43.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEE--eCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--FCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf--~~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|..+.+||++-         .+|.|.||++...+....+..  .-..+|++++|+|....|
T Consensus       250 ~~~v~~v~~~p~~~~~~~s~s---------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l  311 (435)
T 4e54_B          250 KKKVTHVALNPCCDWFLATAS---------VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL  311 (435)
T ss_dssp             SSCEEEEEECTTCSSEEEEEE---------TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred             cceEEeeeecCCCceEEEEec---------CcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence            357999999999888887653         368999999988633333322  225689999999976554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.27  E-value=0.02  Score=48.05  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCc
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFL  230 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPn  230 (232)
                      ..|++|+|||.-+-|++++          .+|.|.||++...  .+...+.. ..+|.+++|+|....
T Consensus        14 ~~V~~~~fsp~~~~l~s~~----------~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~   69 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTL----------YSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNW   69 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEE----------TTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTE
T ss_pred             CceEEEEECCCCCEEEEEc----------CCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCE
Confidence            4799999999876555443          2689999999875  35555554 568999999987543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=95.24  E-value=0.034  Score=48.07  Aligned_cols=59  Identities=17%  Similarity=0.288  Sum_probs=45.1

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEE--e-CCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--F-CQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf--~-~~S~V~~v~FsP~hPnL  231 (232)
                      -...|++|+|+|.-+.+|+++.         .+|.|.||++...  .+...+  . ....|++++|+|....|
T Consensus       130 h~~~v~~~~~~p~~~~~l~s~~---------~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          130 HTKRVGIVAWHPTAQNVLLSAG---------CDNVILVWDVGTG--AAVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             CSSCEEEEEECSSBTTEEEEEE---------TTSCEEEEETTTT--EEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             CCCeEEEEEECcCCCCEEEEEc---------CCCEEEEEECCCC--CccEEEecCCCCCceEEEEECCCCCEE
Confidence            3468999999999877777653         3589999999974  566676  3 35699999999965433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=95.24  E-value=0.038  Score=46.77  Aligned_cols=56  Identities=23%  Similarity=0.373  Sum_probs=44.1

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPn  230 (232)
                      ...|++++|+|.-. +||.+-         .+|.|.||++...  .+.+.+..+..|.+++|+|....
T Consensus       196 ~~~v~~~~~sp~g~-~l~s~~---------~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~sp~~~~  251 (319)
T 3frx_A          196 NSNINTLTASPDGT-LIASAG---------KDGEIMLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYW  251 (319)
T ss_dssp             CSCEEEEEECTTSS-EEEEEE---------TTCEEEEEETTTT--EEEEEEECCSCEEEEEECSSSSE
T ss_pred             CCcEEEEEEcCCCC-EEEEEe---------CCCeEEEEECCCC--cEEEEecCCCcEEEEEEcCCCCE
Confidence            45799999999643 444331         3699999999985  68888899999999999997654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.17  E-value=0.036  Score=48.57  Aligned_cols=61  Identities=20%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ..+..|+++.|+|....|++++-.        .+|.|.||++...  .+-..|..+ ..|++++|+|....|
T Consensus       318 ~~~~~v~~~~~~~~~~~lv~~sg~--------~d~~I~iwd~~~~--~~v~~l~gH~~~V~~l~~spdg~~l  379 (420)
T 4gga_A          318 DAHSQVCSILWSPHYKELISGHGF--------AQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGATV  379 (420)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEECT--------TTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             ccccceeeeeecCCCCeEEEEEec--------CCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            345679999999999888766422        3589999999874  688888774 589999999986654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.16  E-value=0.016  Score=52.65  Aligned_cols=64  Identities=9%  Similarity=-0.008  Sum_probs=44.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCC------CCCCceEEeC----CCCeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK------KTTPEFEFFC----QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~p------k~~PEyvf~~----~S~V~~v~FsP~hPnLI  232 (232)
                      ...|++|+|||.- .+|||+|.+.     ..+|.|.||++...      ...|-+.+..    ...|.+++|||.++++|
T Consensus        92 ~~~v~~l~~spdg-~~lav~~~sg-----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A           92 KFPIHHLALSCDN-LTLSACMMSS-----EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             SSCEEEEEECTTS-CEEEEEEEET-----TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CCcccEEEEcCCC-CEEEEEEecc-----CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            3469999999974 5777776321     24799999987542      0245444443    56899999999977653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.055  Score=44.87  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=42.4

Q ss_pred             CcceeEeecCCCC--CCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCc--eEEe---CCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQH--PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE--FEFF---CQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~--~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PE--yvf~---~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|..  ..+||++-         .+|.|.||++... ..|.  .++.   ....|++++|+|....|
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~---------~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  271 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVS---------QDRTCIIWTQDNE-QGPWKKTLLKEEKFPDVLWRASWSLSGNVL  271 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEE---------TTSCEEEEEESST-TSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEe---------CCCEEEEEeCCCC-CccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence            4579999999986  56666652         3589999999885 3332  1221   45789999999987654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.06  E-value=0.04  Score=47.85  Aligned_cols=59  Identities=8%  Similarity=0.164  Sum_probs=46.4

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ...|++++|+|....+|+.+-         .+|.|.||++... ..+-..+... ..|.+++|+|....|
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs---------~D~~v~~wd~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l  264 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGS---------CDTTVRLWDLRIT-SRAVRTYHGHEGDINSVKFFPDGQRF  264 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEE---------TTSCEEEEETTTT-CCCCEEECCCSSCCCEEEECTTSSEE
T ss_pred             ccCeEEEEeecCCCCEEEEEE---------CCCeEEEEECCCC-CcceEEECCcCCCeEEEEEecCCCeE
Confidence            457899999988888777652         3689999999976 6787788764 589999999976544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.06  E-value=0.045  Score=48.26  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=42.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ..+|++|+|+|..+ ++|++-         .+|.|.||++...  .+...|... ..|+|++|+|....|
T Consensus       108 ~~~V~~~~~~p~~~-~l~s~s---------~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l  165 (410)
T 1vyh_C          108 RSPVTRVIFHPVFS-VMVSAS---------EDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLL  165 (410)
T ss_dssp             SSCEEEEEECSSSS-EEEEEE---------SSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEEEcCCCC-EEEEEe---------CCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEE
Confidence            35899999999765 443331         3689999999874  567777765 589999999976543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=95.02  E-value=0.066  Score=44.13  Aligned_cols=61  Identities=18%  Similarity=0.160  Sum_probs=45.1

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCC--C--CCCceEEeCCC----------CeEEEEecCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK--K--TTPEFEFFCQS----------PVLSCCFAKF  227 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~p--k--~~PEyvf~~~S----------~V~~v~FsP~  227 (232)
                      ....|++|+|+|....+|+++.         .+|.|.||++...  .  ..+.+.|.+..          .|.+++|+|.
T Consensus       192 ~~~~i~~i~~~~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  262 (342)
T 1yfq_A          192 LKYQIRDVALLPKEQEGYACSS---------IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR  262 (342)
T ss_dssp             CSSCEEEEEECSGGGCEEEEEE---------TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred             CCCceeEEEECCCCCCEEEEEe---------cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC
Confidence            3457999999993345666653         2689999999773  0  26888888864          8999999997


Q ss_pred             CCcC
Q psy17341        228 FFLY  231 (232)
Q Consensus       228 hPnL  231 (232)
                      ...|
T Consensus       263 ~~~l  266 (342)
T 1yfq_A          263 HKFL  266 (342)
T ss_dssp             TCCE
T ss_pred             CCEE
Confidence            6544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.99  E-value=0.052  Score=44.24  Aligned_cols=57  Identities=12%  Similarity=0.052  Sum_probs=44.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|.-. +++++.         .+|.|.+|++...  .+...+..+..|.+++|+|....|
T Consensus       183 ~~~i~~~~~~~~~~-~l~~~~---------~dg~i~~~d~~~~--~~~~~~~~~~~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          183 TDGASCIDISNDGT-KLWTGG---------LDNTVRSWDLREG--RQLQQHDFTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             SSCEEEEEECTTSS-EEEEEE---------TTSEEEEEETTTT--EEEEEEECSSCEEEEEECTTSSEE
T ss_pred             cCceEEEEECCCCC-EEEEEe---------cCCcEEEEECCCC--ceEeeecCCCceEEEEECCCCCEE
Confidence            45799999999654 444432         3689999999985  577778888999999999986544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=94.98  E-value=0.037  Score=48.08  Aligned_cols=58  Identities=17%  Similarity=0.295  Sum_probs=44.3

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnLI  232 (232)
                      ...|++|+|+|. ..+||++.         .+|.|.||++...  .|.+.+.. ...|.+++|+|..++|+
T Consensus       217 ~~~v~~~~~~~~-~~~l~s~~---------~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~ll  275 (401)
T 4aez_A          217 SSEVCGLAWRSD-GLQLASGG---------NDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLL  275 (401)
T ss_dssp             SSCEEEEEECTT-SSEEEEEE---------TTSCEEEEETTCS--SEEEEECCCSSCCCEEEECTTSTTEE
T ss_pred             CCCeeEEEEcCC-CCEEEEEe---------CCCeEEEccCCCC--CccEEecCCcceEEEEEECCCCCCEE
Confidence            457999999994 34555542         3589999999984  67777754 56999999999888764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.96  E-value=0.036  Score=48.34  Aligned_cols=58  Identities=14%  Similarity=0.028  Sum_probs=42.4

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEE-eC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-FC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf-~~-~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|||.- .+||++-         .+|.|.||++...  .|...+ .. ...|++++|||.-..|
T Consensus       268 ~~~~V~~~~~Spdg-~~lasgs---------~D~~V~iwd~~~~--~~~~~~~~gH~~~V~~v~fSpdg~~l  327 (365)
T 4h5i_A          268 RFKGITSMDVDMKG-ELAVLAS---------NDNSIALVKLKDL--SMSKIFKQAHSFAITEVTISPDSTYV  327 (365)
T ss_dssp             SCSCEEEEEECTTS-CEEEEEE---------TTSCEEEEETTTT--EEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred             CCCCeEeEEECCCC-CceEEEc---------CCCEEEEEECCCC--cEEEEecCcccCCEEEEEECCCCCEE
Confidence            34679999999964 4565542         3689999999884  566654 44 4689999999976544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=94.92  E-value=0.045  Score=46.60  Aligned_cols=57  Identities=23%  Similarity=0.195  Sum_probs=41.3

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|... ++|.+ +        .+|.|.||++...  .+...|.. ...|.+++|+|....|
T Consensus        76 ~~~V~~~~~~~~~~-~l~s~-s--------~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l  133 (343)
T 2xzm_R           76 NHFVSDLALSQENC-FAISS-S--------WDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQI  133 (343)
T ss_dssp             SSCEEEEEECSSTT-EEEEE-E--------TTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSSTTEE
T ss_pred             CCceEEEEECCCCC-EEEEE-c--------CCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCCCCEE
Confidence            45799999998654 33322 1        3699999999875  46566665 5699999999976544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=94.91  E-value=0.039  Score=49.36  Aligned_cols=58  Identities=10%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             CCcceeEeecCCC---------CCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCC
Q psy17341        162 KNRNVTYMDWSTQ---------HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFF  229 (232)
Q Consensus       162 K~R~VT~IdWsP~---------~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hP  229 (232)
                      ....|++|+|+|.         ...+||++.         .+|.|.||++... ..+-..+.. .+.|++++|+|...
T Consensus       530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          530 RTSKINAISWKPAEKGANEEEIEEDLVATGS---------LDTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEE---------TTSCEEEEESSCT-TCCEEETTSSTTCEEEEEEEETTE
T ss_pred             CCCceeEEEEcCccccccccccCCCEEEEEc---------CCCcEEEEECCCC-ceechhhhcCccceEEEEEcCCCC
Confidence            4568999999994         455666553         3689999999986 566666665 46999999999876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.80  E-value=0.081  Score=46.64  Aligned_cols=57  Identities=18%  Similarity=0.035  Sum_probs=42.3

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcCC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLYA  232 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnLI  232 (232)
                      ..|++|+|+|.-.-|+.++          .+|.|.||+++..  .+...+... ..|++++|+|..+.|+
T Consensus       339 ~~v~~v~~~~~g~~l~s~s----------~D~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~  396 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCA----------DDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVV  396 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEE----------TTTEEEEECCTTS--CCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             CcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCC--ceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence            4688999998655444332          3699999999875  566777664 5899999999987653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.80  E-value=0.077  Score=43.24  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=44.1

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|... +++++-         .+|.|.+|++...  .+.+.+.....|.++.|+|....|
T Consensus       264 ~~~~v~~~~~~~~~~-~l~~~~---------~dg~i~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          264 HESCVLSLKFAYCGK-WFVSTG---------KDNLLNAWRTPYG--ASIFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEE---------TTSEEEEEETTTC--CEEEEEECSSCEEEEEECTTSCEE
T ss_pred             CccceeEEEECCCCC-EEEEec---------CCCcEEEEECCCC--eEEEEecCCCcEEEEEECCCCCEE
Confidence            345799999999655 443332         3589999999985  566777788999999999986544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=94.79  E-value=0.054  Score=47.27  Aligned_cols=57  Identities=14%  Similarity=0.178  Sum_probs=43.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|...-|+.++          .+|.|.||++...  .....+.....|.+++|+|.+.++
T Consensus       165 ~~~v~~~~~~p~~~~l~s~s----------~d~~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~  221 (393)
T 1erj_A          165 EQDIYSLDYFPSGDKLVSGS----------GDRTVRIWDLRTG--QCSLTLSIEDGVTTVAVSPGDGKY  221 (393)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTT--EEEEEEECSSCEEEEEECSTTCCE
T ss_pred             CCCEEEEEEcCCCCEEEEec----------CCCcEEEEECCCC--eeEEEEEcCCCcEEEEEECCCCCE
Confidence            45799999999765443322          3689999999874  567778888899999999976654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=94.64  E-value=0.099  Score=42.21  Aligned_cols=55  Identities=9%  Similarity=0.026  Sum_probs=41.9

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFF  229 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hP  229 (232)
                      ....|++|+|+|.. .|++++          .+|.|.+|++...  .+...+..+. .|.+++|+|...
T Consensus       224 ~~~~i~~~~~~~~~-~l~~~~----------~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          224 HESFVYCIKLLPNG-DIVSCG----------EDRTVRIWSKENG--SLKQVITLPAISIWSVDCMSNGD  279 (313)
T ss_dssp             CSSCEEEEEECTTS-CEEEEE----------TTSEEEEECTTTC--CEEEEEECSSSCEEEEEECTTSC
T ss_pred             CCceEEEEEEecCC-CEEEEe----------cCCEEEEEECCCC--ceeEEEeccCceEEEEEEccCCC
Confidence            34579999999976 344332          3689999999985  5777777665 999999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=94.64  E-value=0.074  Score=43.64  Aligned_cols=54  Identities=13%  Similarity=0.191  Sum_probs=43.0

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~h  228 (232)
                      ...|++|+|+|.-. +||++-         .+|.|.||++...  .+.+.+.....|.++.|+|..
T Consensus       215 ~~~v~~~~~s~~~~-~l~s~s---------~Dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~  268 (340)
T 4aow_A          215 TGYLNTVTVSPDGS-LCASGG---------KDGQAMLWDLNEG--KHLYTLDGGDIINALCFSPNR  268 (340)
T ss_dssp             SSCEEEEEECTTSS-EEEEEE---------TTCEEEEEETTTT--EEEEEEECSSCEEEEEECSSS
T ss_pred             CCcEEEEEECCCCC-EEEEEe---------CCCeEEEEEeccC--ceeeeecCCceEEeeecCCCC
Confidence            45799999998644 555431         3689999999985  688889999999999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.62  E-value=0.06  Score=46.52  Aligned_cols=57  Identities=11%  Similarity=0.088  Sum_probs=42.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcE-EEEEeCCCCCCCCceEEe---CCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGV-CLIWNTKFKKTTPEFEFF---CQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~Gl-VlvWslk~pk~~PEyvf~---~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|||.- .+||.+-         .+|. |.||++...  .+.+.|.   -...|.+++|+|....|
T Consensus       195 ~~~v~~~~~s~~g-~~l~s~s---------~d~~~v~iwd~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~l  255 (355)
T 3vu4_A          195 TNPIKMVRLNRKS-DMVATCS---------QDGTIIRVFKTEDG--VLVREFRRGLDRADVVDMKWSTDGSKL  255 (355)
T ss_dssp             SSCEEEEEECTTS-SEEEEEE---------TTCSEEEEEETTTC--CEEEEEECTTCCSCEEEEEECTTSCEE
T ss_pred             CCceEEEEECCCC-CEEEEEe---------CCCCEEEEEECCCC--cEEEEEEcCCCCCcEEEEEECCCCCEE
Confidence            4579999999953 4554431         3685 999999984  5777777   56799999999976544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.56  E-value=0.055  Score=44.80  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=41.5

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      -...|++|+|+|.-. +||++-         .+|.|.||++...  .....+.. ..+|.+++|+|....|
T Consensus        22 h~~~v~~~~~s~~~~-~l~s~~---------~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l   80 (312)
T 4ery_A           22 HTKAVSSVKFSPNGE-WLASSS---------ADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLL   80 (312)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEE---------TTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cCCcEEEEEECCCCC-EEEEee---------CCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEE
Confidence            346899999999644 554431         3689999999875  35555554 4589999999976543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.55  E-value=0.076  Score=43.93  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=42.2

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|.. .+||++-         .+|.|.||++...  .+...+.. ...|.|+.|+|....|
T Consensus        65 ~~~v~~~~~~~~~-~~l~s~~---------~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l  122 (312)
T 4ery_A           65 KLGISDVAWSSDS-NLLVSAS---------DDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLI  122 (312)
T ss_dssp             SSCEEEEEECTTS-SEEEEEE---------TTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             CCceEEEEEcCCC-CEEEEEC---------CCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            4579999999964 4554431         3689999999874  56666665 4589999999976543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.53  E-value=0.056  Score=47.09  Aligned_cols=56  Identities=13%  Similarity=0.014  Sum_probs=43.1

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCc
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPn  230 (232)
                      .|.+|+|||.- .++|++-|+       .+|.|.||+++..  .+.+.+.....|.+++|+|..-.
T Consensus       135 ~~~~v~fSpDg-~~la~as~~-------~d~~i~iwd~~~~--~~~~~~~~~~~V~~v~fspdg~~  190 (365)
T 4h5i_A          135 YTKLVYISREG-TVAAIASSK-------VPAIMRIIDPSDL--TEKFEIETRGEVKDLHFSTDGKV  190 (365)
T ss_dssp             CEEEEEECTTS-SCEEEEESC-------SSCEEEEEETTTT--EEEEEEECSSCCCEEEECTTSSE
T ss_pred             CEEEEEEcCCC-CEEEEEECC-------CCCEEEEeECCCC--cEEEEeCCCCceEEEEEccCCce
Confidence            47889999864 345554443       3699999999984  68888888899999999997543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.51  E-value=0.12  Score=43.55  Aligned_cols=59  Identities=15%  Similarity=0.258  Sum_probs=39.8

Q ss_pred             cceeEeecCCCC---CCeEEEEeccCCCCCCCCCcEEEEEeCCCCC--C-CCceEEeCCCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQH---PELLLASYHRNKEAPNEPDGVCLIWNTKFKK--T-TPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~---~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk--~-~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ..|++|+|+|..   ..+||.+ +        .+|.|.||++....  . .+..+-.-...|.+++|+|....|
T Consensus       213 ~~V~~v~~sp~~~~~~~~las~-s--------~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l  277 (316)
T 3bg1_A          213 DWVRDVAWAPSIGLPTSTIASC-S--------QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANIL  277 (316)
T ss_dssp             SCEEEEECCCCSSCSCCEEEEE-E--------TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCE
T ss_pred             CceEEEEecCCCCCCCceEEEE-c--------CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEE
Confidence            469999999976   2344432 2        36999999998631  1 123333346799999999986654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=94.50  E-value=0.073  Score=45.32  Aligned_cols=57  Identities=25%  Similarity=0.375  Sum_probs=40.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|... ++|.+-         .+|.|.||++...  .+...+.. ...|++++|+|....|
T Consensus        55 ~~~v~~~~~s~d~~-~l~s~s---------~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l  112 (340)
T 1got_B           55 LAKIYAMHWGTDSR-LLLSAS---------QDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             SSCEEEEEECTTSS-EEEEEE---------TTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CCceEEEEECCCCC-EEEEEe---------CCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEE
Confidence            35899999998654 444331         3699999999875  34555554 4589999999975443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=94.43  E-value=0.04  Score=44.56  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=41.3

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+| |. ..+||++.         .+|.|.||++... ..+..+......|.+++|+|....|
T Consensus        18 ~~~v~~~~~-~~-~~~l~s~~---------~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l   74 (313)
T 3odt_A           18 DQDVRDVVA-VD-DSKVASVS---------RDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELL   74 (313)
T ss_dssp             SSCEEEEEE-EE-TTEEEEEE---------TTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             CCCcEEEEe-cC-CCEEEEEE---------cCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEE
Confidence            458999999 54 44555442         3699999999775 4455555557899999999976543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=94.42  E-value=0.027  Score=56.17  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=43.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-------------------CCeEEEE
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-------------------SPVLSCC  223 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-------------------S~V~~v~  223 (232)
                      ...|++|+|||....++|+++.         +|.| ||+++..  .+...|...                   ..|++++
T Consensus       151 ~~~V~sl~~sp~~~~~l~~g~~---------dg~v-lWd~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~  218 (902)
T 2oaj_A          151 LSPIVSIQWNPRDIGTVLISYE---------YVTL-TYSLVEN--EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL  218 (902)
T ss_dssp             CCCCCEEEEETTEEEEEEEECS---------SCEE-EEETTTT--EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred             CCCeEEEEEccCCCCEEEEEeC---------CCcE-EEECCCC--ceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence            3479999999988788888753         4899 9999874  566666544                   5799999


Q ss_pred             ecCCCCc
Q psy17341        224 FAKFFFL  230 (232)
Q Consensus       224 FsP~hPn  230 (232)
                      |+|.-..
T Consensus       219 fspdg~~  225 (902)
T 2oaj_A          219 YHPNSLH  225 (902)
T ss_dssp             ECTTSSE
T ss_pred             EcCCCCE
Confidence            9997543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.41  E-value=0.096  Score=44.81  Aligned_cols=61  Identities=13%  Similarity=0.156  Sum_probs=41.3

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCC--CCCCceEEe-----C-CCCeEEEEecCCCCcCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK--KTTPEFEFF-----C-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~p--k~~PEyvf~-----~-~S~V~~v~FsP~hPnLI  232 (232)
                      ..+.|.+|+|+|...-|+.++          .+|.|.||+....  +..|.+.+.     . ...|.|++|||..|++|
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  319 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATAC----------GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL  319 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEE----------TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred             CCCcEEEEEEecCCCEEEEEe----------CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence            346799999999765444332          3588999987653  134444332     1 45899999999988653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=94.39  E-value=0.035  Score=45.81  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=42.2

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCC---CCceEEeCCCCeEEEEecCCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT---TPEFEFFCQSPVLSCCFAKFFF  229 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~---~PEyvf~~~S~V~~v~FsP~hP  229 (232)
                      -...|++|+|+|. ..+||++.         .+|.|.||++... .   .+..++.....|+|++|+|...
T Consensus        10 h~~~v~~~~~s~~-~~~l~~~~---------~d~~v~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~   69 (342)
T 1yfq_A           10 PKDYISDIKIIPS-KSLLLITS---------WDGSLTVYKFDIQ-AKNVDLLQSLRYKHPLLCCNFIDNTD   69 (342)
T ss_dssp             CSSCEEEEEEEGG-GTEEEEEE---------TTSEEEEEEEETT-TTEEEEEEEEECSSCEEEEEEEESSS
T ss_pred             CCCcEEEEEEcCC-CCEEEEEc---------CCCeEEEEEeCCC-CccccceeeeecCCceEEEEECCCCC
Confidence            3458999999995 34555542         3589999999875 3   2556666678999999999754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.36  E-value=0.09  Score=43.88  Aligned_cols=59  Identities=14%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             CcceeEeecCCCC--CCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCC--ceEE---eCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQH--PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP--EFEF---FCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~--~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~P--Eyvf---~~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|..  ..+||.+ +        .+|.|.||++... ..|  ..++   .-+..|.+++|+|....|
T Consensus       204 ~~~V~~v~~sp~~~~~~~las~-s--------~D~~v~iWd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  269 (297)
T 2pm7_B          204 SDWVRDVAWSPTVLLRSYMASV-S--------QDRTCIIWTQDNE-QGPWKKTLLKEEKFPDVLWRASWSLSGNVL  269 (297)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEE-E--------TTSCEEEEEESST-TSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred             CCceEEEEECCCCCCceEEEEE-E--------CCCcEEEEEeCCC-CCccceeeeecccCCCcEEEEEECCCCCEE
Confidence            3479999999986  3455443 2        3689999999875 322  1233   125689999999986654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=94.32  E-value=0.097  Score=49.19  Aligned_cols=56  Identities=16%  Similarity=0.236  Sum_probs=41.0

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEE--EecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSC--CFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v--~FsP~hPnL  231 (232)
                      ..|+|++|+|.  ++||++.         .+|.|.+|++..+ ..|-..+.. ..+|+++  .|+|.-+++
T Consensus       267 ~~v~sv~~s~~--~~lasgs---------~DgtV~lWD~~~~-~~~~~~~~~H~~~V~sv~~~~s~~g~~~  325 (524)
T 2j04_B          267 SLITTFDFLSP--TTVVCGF---------KNGFVAEFDLTDP-EVPSFYDQVHDSYILSVSTAYSDFEDTV  325 (524)
T ss_dssp             TCEEEEEESSS--SEEEEEE---------TTSEEEEEETTBC-SSCSEEEECSSSCEEEEEEECCTTSCCE
T ss_pred             CCEEEEEecCC--CeEEEEe---------CCCEEEEEECCCC-CCceEEeecccccEEEEEEEcCCCCCeE
Confidence            57999999973  5666653         3699999999986 678777765 4689999  455542254

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.24  E-value=0.11  Score=48.85  Aligned_cols=60  Identities=8%  Similarity=0.089  Sum_probs=44.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC---CCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK---TTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk---~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|...++||.+-         .+|.|.||++....   ..+...+..+ ..|.|++|+|....|
T Consensus       382 ~~~V~~v~~~~~~~~~l~s~s---------~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l  445 (694)
T 3dm0_A          382 TDMVTAIATPIDNADIIVSAS---------RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA  445 (694)
T ss_dssp             SSCEEEEECCTTCCSEEEEEE---------TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CceeEEEEecCCCCCEEEEEe---------CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEE
Confidence            458999999999999887652         36899999997641   1234556654 589999999976544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.09  E-value=0.056  Score=50.71  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=42.6

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe-CCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~-~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|||.-+ ++|++.         .+|.|.||++...  .+...+. ...+|.+++|+|....|
T Consensus        12 h~~~v~~i~~sp~~~-~la~~~---------~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l   70 (814)
T 3mkq_A           12 RSDRVKGIDFHPTEP-WVLTTL---------YSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNWI   70 (814)
T ss_dssp             ECSCEEEEEECSSSS-EEEEEE---------TTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred             CCCceEEEEECCCCC-EEEEEe---------CCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeCCCCEE
Confidence            345799999999654 555553         2589999999875  3545555 46799999999976544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.01  E-value=0.22  Score=42.51  Aligned_cols=54  Identities=19%  Similarity=0.376  Sum_probs=42.1

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe--CCCCeEEEEecC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAK  226 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~--~~S~V~~v~FsP  226 (232)
                      ...|++|+|+|..+.+|+++.         .+|.|.||++... ..|-..+.  ....|.++.|++
T Consensus       290 ~~~v~~~~~~~~~~~~l~~g~---------~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~  345 (420)
T 3vl1_A          290 TCSCNSLTVDGNNANYIYAGY---------ENGMLAQWDLRSP-ECPVGEFLINEGTPINNVYFAA  345 (420)
T ss_dssp             SSCEEEEEECSSCTTEEEEEE---------TTSEEEEEETTCT-TSCSEEEEESTTSCEEEEEEET
T ss_pred             CCCceeEEEeCCCCCEEEEEe---------CCCeEEEEEcCCC-cCchhhhhccCCCCceEEEeCC
Confidence            357999999999887887764         3589999999997 67766665  456888887654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=93.99  E-value=0.11  Score=45.90  Aligned_cols=58  Identities=7%  Similarity=-0.046  Sum_probs=42.5

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe---CCCCeEEEEecCCCCcC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF---CQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~---~~S~V~~v~FsP~hPnL  231 (232)
                      .|++|+|+|...-|+|++.         .+|.|.||++......+...+.   .+..|++++|+|....|
T Consensus       104 ~v~~~~~s~d~~~l~~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  164 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACAD---------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTV  164 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEG---------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             ceEEEEEcCCCCEEEEEEC---------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEE
Confidence            7999999998766655542         2589999999831135666663   35799999999976554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.95  E-value=0.077  Score=45.11  Aligned_cols=60  Identities=13%  Similarity=0.184  Sum_probs=37.9

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC-----CCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-----TTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk-----~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      -...|++|+|+|.. .+||++.         .+|.|.||++..+.     ..+..++.. ...|.+++|+|....|
T Consensus        57 h~~~v~~v~~sp~~-~~las~s---------~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l  122 (330)
T 2hes_X           57 HKKAIRSVAWRPHT-SLLAAGS---------FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL  122 (330)
T ss_dssp             CCSCEEEEEECTTS-SEEEEEE---------TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEE
T ss_pred             ccCCEEEEEECCCC-CEEEEEe---------CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEE
Confidence            34589999999974 4555442         36899999996421     123455554 3589999999975443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.92  E-value=0.1  Score=43.94  Aligned_cols=59  Identities=8%  Similarity=0.157  Sum_probs=36.9

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCC-CCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-TTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk-~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|.-. +||++-         .+|.|.||++...+ ..|...+.. ...|.+++|+|....|
T Consensus        55 ~~~v~~~~~s~~~~-~l~s~s---------~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  115 (377)
T 3dwl_C           55 DKIVTCVDWAPKSN-RIVTCS---------QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKF  115 (377)
T ss_dssp             SSCEEEEEECTTTC-CEEEEE---------TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCC
T ss_pred             CceEEEEEEeCCCC-EEEEEe---------CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEE
Confidence            45799999999754 444432         36899999999862 235555544 5699999999965443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=93.90  E-value=0.07  Score=45.51  Aligned_cols=57  Identities=16%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|.-.-|+.++          .+|.|.||++...  .+...|.. ...|.+++|+|....|
T Consensus       248 ~~~v~~~~~sp~~~~l~s~s----------~D~~v~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l  305 (321)
T 3ow8_A          248 ASWVLNVAFCPDDTHFVSSS----------SDKSVKVWDVGTR--TCVHTFFDHQDQVWGVKYNGNGSKI  305 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----------TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCceEEEEECCCCCEEEEEe----------CCCcEEEEeCCCC--EEEEEEcCCCCcEEEEEECCCCCEE
Confidence            34699999999755333222          3689999999875  45556644 5699999999976544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.88  E-value=0.052  Score=47.15  Aligned_cols=56  Identities=23%  Similarity=0.370  Sum_probs=40.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPn  230 (232)
                      ...|++|+|+|.-.-|+.+|          .+|.|.||++...  .+...+... ..|++++|+|....
T Consensus        66 ~~~V~~~~~sp~~~~l~s~s----------~D~~v~iWd~~~~--~~~~~~~~h~~~v~~~~~s~~g~~  122 (380)
T 3iz6_a           66 SGKVYSLDWTPEKNWIVSAS----------QDGRLIVWNALTS--QKTHAIKLHCPWVMECAFAPNGQS  122 (380)
T ss_dssp             SSCEEEEEECTTSSCEEEEE----------TTSEEEEEETTTT--EEEEEEECCCTTCCCCEECTTSSE
T ss_pred             ccEEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCC--ccceEEecCCCCEEEEEECCCCCE
Confidence            35799999999654343332          3799999999874  456666654 47999999997543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=93.83  E-value=0.14  Score=45.87  Aligned_cols=55  Identities=15%  Similarity=0.127  Sum_probs=40.7

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ..|+||+|||.- .+||++-         .+|.|.||+..   ..+...|... ..|+|++|+|....|
T Consensus        17 ~~V~~~a~spdg-~~las~~---------~d~~v~iWd~~---~~~~~~l~gh~~~V~~l~fspdg~~l   72 (577)
T 2ymu_A           17 SSVRGVAFSPDG-QTIASAS---------DDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPDGQTI   72 (577)
T ss_dssp             SCEEEEEECTTS-SCEEEEE---------TTSEEEEECTT---SCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CcEEEEEECCCC-CEEEEEe---------CCCEEEEEECC---CCEEEEEeCCCCCEEEEEECCCCCEE
Confidence            479999999954 3555541         36899999953   4577777764 599999999976544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=93.82  E-value=0.069  Score=45.58  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|.-. +||++         ..+|.|.||++...  .+...+... ..|++++|+|....|
T Consensus       206 ~~~v~~l~~spd~~-~l~s~---------s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l  263 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQ-LLVTA---------SDDGYIKIYDVQHA--NLAGTLSGHASWVLNVAFCPDDTHF  263 (321)
T ss_dssp             SSCCCEEEECTTSC-EEEEE---------CTTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCceeEEEEcCCCC-EEEEE---------cCCCeEEEEECCCc--ceeEEEcCCCCceEEEEECCCCCEE
Confidence            45799999999644 44443         13689999999875  455666654 579999999987654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=93.77  E-value=0.12  Score=43.09  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             CcceeEeecCCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCC
Q psy17341        163 NRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKF  227 (232)
Q Consensus       163 ~R~VT~IdWsP~-~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~  227 (232)
                      ...|++|+|+|. +..+||.+-         .+|.|.||++...+..+...+.. ...|.+++|+|.
T Consensus        53 ~~~V~~v~~s~~~~g~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~  110 (297)
T 2pm7_B           53 EGPVWRVDWAHPKFGTILASCS---------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH  110 (297)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEE---------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCG
T ss_pred             cCCeEEEEecCCCcCCEEEEEc---------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcC
Confidence            358999999864 456666542         36899999998752235555554 468999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=93.76  E-value=0.095  Score=45.21  Aligned_cols=55  Identities=22%  Similarity=0.439  Sum_probs=39.0

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFF  229 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hP  229 (232)
                      ...|+||+|+|... +||.+ +        .+|.|.||+....  .....+.. ...|++++|+|...
T Consensus        64 ~~~V~~~~~s~d~~-~l~s~-s--------~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~  119 (354)
T 2pbi_B           64 GNKVLCMDWCKDKR-RIVSS-S--------QDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGC  119 (354)
T ss_dssp             SSCEEEEEECTTSS-EEEEE-E--------TTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSS
T ss_pred             CCeEEEEEECCCCC-EEEEE-e--------CCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCC
Confidence            34799999999754 44433 1        3799999998764  34444444 45899999999754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.71  E-value=0.096  Score=49.22  Aligned_cols=56  Identities=5%  Similarity=-0.012  Sum_probs=39.7

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcCC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnLI  232 (232)
                      .|++|+|||.-.- ||++-         .++.|.||+++.. . ....|.. ...|++++|||.++.|+
T Consensus       357 ~v~~v~fsp~~~~-l~s~~---------~d~tv~lwd~~~~-~-~~~~l~gH~~~V~sva~Sp~g~~l~  413 (524)
T 2j04_B          357 NLVPVVYCPQIYS-YIYSD---------GASSLRAVPSRAA-F-AVHPLVSRETTITAIGVSRLHPMVL  413 (524)
T ss_dssp             SCCCEEEETTTTE-EEEEC---------SSSEEEEEETTCT-T-CCEEEEECSSCEEEEECCSSCCBCE
T ss_pred             cccceEeCCCcCe-EEEeC---------CCCcEEEEECccc-c-cceeeecCCCceEEEEeCCCCCeEE
Confidence            4899999997544 33321         2468999999985 3 3344443 56999999999998763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.67  E-value=0.067  Score=50.18  Aligned_cols=58  Identities=9%  Similarity=-0.018  Sum_probs=43.5

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ....|++++|+|... +||++.         .+|.|.||++...  .+...+.. ...|.+++|+|..+.|
T Consensus        54 ~~~~v~~~~~s~~~~-~l~~~~---------~dg~i~vw~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l  112 (814)
T 3mkq_A           54 TETPVRAGKFIARKN-WIIVGS---------DDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYV  112 (814)
T ss_dssp             CSSCEEEEEEEGGGT-EEEEEE---------TTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             CCCcEEEEEEeCCCC-EEEEEe---------CCCeEEEEECCCC--cEEEEEecCCCCEEEEEEeCCCCEE
Confidence            456899999999654 455442         2689999999875  45556664 5689999999998765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.64  E-value=0.12  Score=43.92  Aligned_cols=55  Identities=20%  Similarity=0.192  Sum_probs=40.8

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      .|++|+|+|.-. ++|++.         .+|.|.||++...  .+...+.. ...|.|++|+|....|
T Consensus       272 ~v~~~~~s~~g~-~l~~g~---------~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l  327 (340)
T 1got_B          272 GITSVSFSKSGR-LLLAGY---------DDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             CEEEEEECTTSS-EEEEEE---------TTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             ceEEEEECCCCC-EEEEEC---------CCCeEEEEEcccC--cEeeEeecCCCcEEEEEEcCCCCEE
Confidence            699999999654 555543         3589999999875  45566665 4699999999976544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.43  E-value=0.087  Score=45.06  Aligned_cols=59  Identities=20%  Similarity=0.192  Sum_probs=39.9

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCc
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFL  230 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPn  230 (232)
                      -...|++|+|+|.- .+||++-         .+|.|.||++......+...|... ..|.+++|+|....
T Consensus        60 h~~~v~~~~~sp~g-~~l~s~s---------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  119 (345)
T 3fm0_A           60 HQRTVRKVAWSPCG-NYLASAS---------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL  119 (345)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEE---------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cCCcEEEEEECCCC-CEEEEEE---------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCE
Confidence            34689999999964 3444431         368999999876411234455543 58999999997543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=93.37  E-value=0.18  Score=43.38  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             CcceeEeecCCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~-eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++++|+|... .+|+.+.         .+|.|.+|++...  .+...|.. ...|.+++|+|....|
T Consensus       196 ~~~v~~~~~~~~~~g~~l~sgs---------~Dg~v~~wd~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l  255 (354)
T 2pbi_B          196 GADVLCLDLAPSETGNTFVSGG---------CDKKAMVWDMRSG--QCVQAFETHESDVNSVRYYPSGDAF  255 (354)
T ss_dssp             SSCEEEEEECCCSSCCEEEEEE---------TTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCCeEEEEEEeCCCCCEEEEEe---------CCCeEEEEECCCC--cEEEEecCCCCCeEEEEEeCCCCEE
Confidence            45799999999764 5665542         3689999999885  56677765 4689999999976543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=93.32  E-value=0.14  Score=43.04  Aligned_cols=57  Identities=14%  Similarity=0.229  Sum_probs=43.1

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|..  +++++.         .+|.|.+|++...  .+...+.. ..+|.+++|+|....|
T Consensus       288 ~~~~i~~~~~~~~~--~l~~~~---------~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l  345 (425)
T 1r5m_A          288 HSQSIVSASWVGDD--KVISCS---------MDGSVRLWSLKQN--TLLALSIVDGVPIFAGRISQDGQKY  345 (425)
T ss_dssp             CSSCEEEEEEETTT--EEEEEE---------TTSEEEEEETTTT--EEEEEEECTTCCEEEEEECTTSSEE
T ss_pred             CCccEEEEEECCCC--EEEEEe---------CCCcEEEEECCCC--cEeEecccCCccEEEEEEcCCCCEE
Confidence            45689999999976  555442         2589999999885  46666765 5799999999976544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.31  E-value=0.14  Score=43.21  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=37.8

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCC--CceEEe--CCCCeEEEEecCCCCc
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT--PEFEFF--CQSPVLSCCFAKFFFL  230 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~--PEyvf~--~~S~V~~v~FsP~hPn  230 (232)
                      -...|++|+|+|.-. +||++.         .+|.|.+|++... ..  ....+.  ....|++++|+|....
T Consensus        99 ~~~~v~~~~~~~~~~-~l~~~~---------~d~~i~iwd~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           99 LNRAATFVRWSPNED-KFAVGS---------GARVISVCYFEQE-NDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             CSSCEEEEECCTTSS-CCEEEE---------SSSCEEECCC------CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             cCCceEEEEECCCCC-EEEEEe---------cCCeEEEEEECCc-ccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            355899999999644 444332         2578999999885 32  345555  3679999999996543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.25  E-value=0.12  Score=42.94  Aligned_cols=55  Identities=13%  Similarity=0.022  Sum_probs=42.0

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCC-CeEEEEecCCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFFF  229 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S-~V~~v~FsP~hP  229 (232)
                      ...|++|+|+|... +|+++.         .+|.|.+|++...  .+...+.... +|.+++|+|...
T Consensus       202 ~~~v~~~~~~~~~~-~l~~~~---------~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~  257 (372)
T 1k8k_C          202 CGWVHGVCFSANGS-RVAWVS---------HDSTVCLADADKK--MAVATLASETLPLLAVTFITESS  257 (372)
T ss_dssp             SSCEEEEEECSSSS-EEEEEE---------TTTEEEEEEGGGT--TEEEEEECSSCCEEEEEEEETTE
T ss_pred             CCeEEEEEECCCCC-EEEEEe---------CCCEEEEEECCCC--ceeEEEccCCCCeEEEEEecCCC
Confidence            45799999999654 444442         3689999999885  5777777654 999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.24  E-value=0.07  Score=44.42  Aligned_cols=59  Identities=10%  Similarity=0.017  Sum_probs=41.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ..+|++|+|+|.- .+||++-         .+|.|.||++...+..+...+.. ...|.+++|+|....|
T Consensus         8 ~~~i~~~~~s~~~-~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l   67 (372)
T 1k8k_C            8 VEPISCHAWNKDR-TQIAICP---------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI   67 (372)
T ss_dssp             SSCCCEEEECTTS-SEEEEEC---------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEE
T ss_pred             CCCeEEEEECCCC-CEEEEEe---------CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEE
Confidence            4589999999864 4555541         25899999998741115556654 5699999999965443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=93.22  E-value=0.15  Score=42.95  Aligned_cols=57  Identities=21%  Similarity=0.271  Sum_probs=40.5

Q ss_pred             CcceeEeecCCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~-~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~h  228 (232)
                      ...|++|+|+|. ...+||.+-         .+|.|.||++...+..+.+.+.. ...|.+++|+|..
T Consensus        57 ~~~V~~v~~~~~~~~~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~  115 (316)
T 3bg1_A           57 EGPVWQVAWAHPMYGNILASCS---------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD  115 (316)
T ss_dssp             SSCEEEEEECCGGGSSCEEEEE---------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT
T ss_pred             CccEEEEEeCCCCCCCEEEEEE---------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCC
Confidence            358999999864 456666541         36899999998752234555554 4689999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.22  E-value=0.15  Score=43.22  Aligned_cols=59  Identities=17%  Similarity=0.110  Sum_probs=38.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCC--CCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--TPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~--~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|.- .+||.+-         .+|.|.||++.....  .+..++.. ...|.+++|+|....|
T Consensus       107 ~~~V~~v~~sp~g-~~las~s---------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l  168 (330)
T 2hes_X          107 ENEVKGVAWSNDG-YYLATCS---------RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL  168 (330)
T ss_dssp             --CEEEEEECTTS-CEEEEEE---------TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred             CCcEEEEEECCCC-CEEEEEe---------CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEE
Confidence            3579999999964 3444431         368999999954311  23345554 4589999999975543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=93.20  E-value=0.13  Score=43.45  Aligned_cols=57  Identities=19%  Similarity=0.111  Sum_probs=40.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++++|+|.-.-|+.++          .+|.|.||++...  .+...|.. ..+|++++|+|....|
T Consensus        65 ~~~v~~~~~s~dg~~l~s~s----------~D~~v~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l  122 (319)
T 3frx_A           65 SHIVQDCTLTADGAYALSAS----------WDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMI  122 (319)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             cccEEEEEECCCCCEEEEEe----------CCCEEEEEECCCC--CeeEEEccCCCcEEEEEEcCCCCEE
Confidence            45899999998644333322          3699999999885  35455554 5689999999975543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=93.13  E-value=0.14  Score=45.74  Aligned_cols=55  Identities=13%  Similarity=0.155  Sum_probs=40.1

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCC--CCCCceEEeCC-CC-eEEEEecC
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK--KTTPEFEFFCQ-SP-VLSCCFAK  226 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~p--k~~PEyvf~~~-S~-V~~v~FsP  226 (232)
                      .....|++|+|||.-. ++|++.          +|.|.||++...  +..+...|... .. |+|++|+|
T Consensus        16 ~~~~~v~~~~~spdg~-~l~~~~----------~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp   74 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTN-AIAYPC----------GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP   74 (615)
T ss_dssp             CCTTCCCCCEEETTTT-EEEEEE----------TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECS
T ss_pred             CccCceeEEEECCCCC-EEEEec----------CCeEEEEECCCCCCccccceEEecCCCceEEEEEECc
Confidence            4566899999999754 555543          368999999864  01466667654 46 99999999

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.06  E-value=0.15  Score=44.34  Aligned_cols=56  Identities=11%  Similarity=0.046  Sum_probs=41.0

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      ..|++|+|+|.-. +||++.         .+|.|.||++...  .+..++... ..|.+++|+|....|
T Consensus       124 ~~v~~v~~s~dg~-~l~s~~---------~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l  180 (393)
T 1erj_A          124 LYIRSVCFSPDGK-FLATGA---------EDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKL  180 (393)
T ss_dssp             CBEEEEEECTTSS-EEEEEE---------TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             eeEEEEEECCCCC-EEEEEc---------CCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEE
Confidence            3599999999644 454432         3589999999874  466666654 589999999986554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=92.89  E-value=0.17  Score=45.29  Aligned_cols=55  Identities=15%  Similarity=0.056  Sum_probs=40.2

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ..|++|+|||.-. +||++.         .+|.|.||++..   .+...+.. ...|.+++|+|....|
T Consensus        58 ~~V~~l~fspdg~-~las~~---------~d~~i~vWd~~~---~~~~~~~~~~~~v~~~~~s~d~~~l  113 (577)
T 2ymu_A           58 SSVWGVAFSPDGQ-TIASAS---------DDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTI  113 (577)
T ss_dssp             SCEEEEEECTTSS-EEEEEE---------TTSCEEEEETTS---CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCEEEEEECCCCC-EEEEEe---------CCCEEEEEECCC---CEEEEEECCCCCEEEEEECCCCCEE
Confidence            4799999999643 554432         258999999643   46677766 4589999999976554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=92.87  E-value=0.15  Score=43.16  Aligned_cols=56  Identities=13%  Similarity=0.024  Sum_probs=38.3

Q ss_pred             cceeEeecCCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEE--eCCCCeEEEEecCCCCc
Q psy17341        164 RNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--FCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       164 R~VT~IdWsP~~-~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf--~~~S~V~~v~FsP~hPn  230 (232)
                      ..|++|+|+|.. ..+||++ +        .+|.|.||++...  .+..++  +....|+|++|+|....
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~-s--------~dg~i~~wd~~~~--~~~~~~~~~~~~~i~~~~~~pdg~~  184 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWA-D--------NRGTIGFQSYEDD--SQYIVHSAKSDVEYSSGVLHKDSLL  184 (343)
T ss_dssp             SCEEEEECCC---CCEEEEE-E--------TTCCEEEEESSSS--CEEEEECCCSSCCCCEEEECTTSCE
T ss_pred             CCEEEEEcCCCCCCCEEEEE-e--------CCCcEEEEECCCC--cEEEEEecCCCCceEEEEECCCCCE
Confidence            479999999954 3444433 2        3689999999875  454444  33457999999997543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=92.56  E-value=0.26  Score=47.45  Aligned_cols=57  Identities=23%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             CCcceeEeecCCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCC
Q psy17341        162 KNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKF  227 (232)
Q Consensus       162 K~R~VT~IdWsP~~-~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~  227 (232)
                      ....|++|+|+|.. ..+++++-         .+|.|.+|++......+...+.. ...|.++.|+|.
T Consensus        98 h~~~V~~v~~sp~~~~~~l~sgs---------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           98 HSASVNSVQWAPHEYGPLLLVAS---------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEE---------TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             CCCCeEEEEECCCCCCCEEEEEe---------CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            45689999999985 45666552         36899999998863344444444 579999999995

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=92.37  E-value=0.18  Score=47.39  Aligned_cols=57  Identities=19%  Similarity=0.153  Sum_probs=41.2

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|.-. +++++ +        .+|.|.||++...  .....|.. ...|+|++|+|....|
T Consensus       430 ~~~v~~v~~s~~g~-~l~sg-s--------~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l  487 (694)
T 3dm0_A          430 SHFVEDVVLSSDGQ-FALSG-S--------WDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQI  487 (694)
T ss_dssp             SSCEEEEEECTTSS-EEEEE-E--------TTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CCcEEEEEECCCCC-EEEEE-e--------CCCcEEEEECCCC--cceeEEeCCCCCEEEEEEeCCCCEE
Confidence            35799999998643 44332 1        3699999999874  45556655 4589999999987654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=91.28  E-value=0.29  Score=45.52  Aligned_cols=56  Identities=20%  Similarity=0.250  Sum_probs=39.2

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC--CCCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC--QSPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~--~S~V~~v~FsP~h  228 (232)
                      ...|++|+|||.-. +||.+  +       .+|.|.||++..+...+..++..  ...|++++|+|..
T Consensus       536 ~~~V~~v~fspdg~-~lasg--s-------~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~  593 (611)
T 1nr0_A          536 TAKVACVSWSPDNV-RLATG--S-------LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET  593 (611)
T ss_dssp             SSCEEEEEECTTSS-EEEEE--E-------TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT
T ss_pred             ccceeEEEECCCCC-EEEEE--E-------CCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC
Confidence            45799999999754 33332  1       36899999998862233245544  4799999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=91.24  E-value=0.39  Score=40.56  Aligned_cols=58  Identities=10%  Similarity=-0.145  Sum_probs=45.2

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      +..|++++|+|.-.-|++++.         .+|.|.+|++...  .....+.....|.+++|+|....|
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~---------~d~~i~v~d~~~~--~~~~~~~~~~~v~~~~~spdg~~l   88 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANA---------HSNDVSIIDTATN--NVIATVPAGSSPQGVAVSPDGKQV   88 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEG---------GGTEEEEEETTTT--EEEEEEECSSSEEEEEECTTSSEE
T ss_pred             CCCcceEEECCCCCEEEEECC---------CCCeEEEEECCCC--eEEEEEECCCCccceEECCCCCEE
Confidence            346899999998776655542         2478999999874  567777778899999999987755

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=91.08  E-value=0.29  Score=45.49  Aligned_cols=59  Identities=15%  Similarity=0.118  Sum_probs=42.3

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP~hPnL  231 (232)
                      -...|++++|+|..+.+||.+-         .+|.|.||+...  ......|... ..|.|++|+|....|
T Consensus       146 h~~~v~~v~f~p~~~~~l~s~s---------~D~~v~lwd~~~--~~~~~~l~~H~~~V~~v~fspdg~~l  205 (611)
T 1nr0_A          146 QARAMNSVDFKPSRPFRIISGS---------DDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSLF  205 (611)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEE---------TTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCceEEEECCCCCeEEEEEe---------CCCeEEEEECCC--CeEeeeeccccCceEEEEECCCCCEE
Confidence            3458999999998776555431         368999999765  3455566654 489999999975443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=90.94  E-value=0.54  Score=41.04  Aligned_cols=56  Identities=11%  Similarity=0.044  Sum_probs=39.5

Q ss_pred             eeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCc
Q psy17341        166 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       166 VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPn  230 (232)
                      +....|+|....+++++-+        .+|.|.||++... ...........+|.+++|||.-..
T Consensus       318 ~~~~~~~~~~~~~~~~sgs--------~Dg~V~lwd~~~~-~~~~~~~~~~~~V~svafspdG~~  373 (393)
T 4gq1_A          318 LLGACPHPRYMDYFATAHS--------QHGLIQLINTYEK-DSNSIPIQLGMPIVDFCWHQDGSH  373 (393)
T ss_dssp             SSCCEECSSCTTEEEEEET--------TTTEEEEEETTCT-TCCEEEEECSSCEEEEEECTTSSE
T ss_pred             ceeEEEccCCCCEEEEEEC--------CCCEEEEEECCCC-cEEEEecCCCCcEEEEEEcCCCCE
Confidence            3455677777777777632        3699999999886 333444555679999999997543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=90.82  E-value=0.36  Score=42.53  Aligned_cols=56  Identities=5%  Similarity=-0.056  Sum_probs=38.6

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCC--CceEEe-CCCCeEEEEecCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT--PEFEFF-CQSPVLSCCFAKF  227 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~--PEyvf~-~~S~V~~v~FsP~  227 (232)
                      -...|++|+|+|.-. +|+++-         .+|.|.+|++...+..  +...+. -...|.|++|+|.
T Consensus       148 ~~~~v~~~~~sp~~~-~l~~~~---------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  206 (450)
T 2vdu_B          148 FSKRPNAISIAEDDT-TVIIAD---------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD  206 (450)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEE---------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC
T ss_pred             CCCCceEEEEcCCCC-EEEEEe---------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCC
Confidence            346899999999764 444441         2689999999875222  222333 3579999999997

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=90.74  E-value=0.2  Score=43.38  Aligned_cols=67  Identities=9%  Similarity=0.027  Sum_probs=44.0

Q ss_pred             CcceeEeecCC--CCCCeEEEEeccCCC----CCCCCCcEEEEEeCCCCCCCCceEEeC---CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWST--QHPELLLASYHRNKE----APNEPDGVCLIWNTKFKKTTPEFEFFC---QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP--~~~eL~aVSYgs~~~----~~~~~~GlVlvWslk~pk~~PEyvf~~---~S~V~~v~FsP~hPnL  231 (232)
                      ...|..+.|+|  ....+..+.|.....    .....+|.|.+|++...  .+...+..   ...|+|++|+|....|
T Consensus       154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l  229 (437)
T 3gre_A          154 CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL--ERLQIIENSPRHGAVSSICIDEECCVL  229 (437)
T ss_dssp             EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--CEEEEEECCGGGCCEEEEEECTTSCEE
T ss_pred             cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--eeeEEEccCCCCCceEEEEECCCCCEE
Confidence            34777788877  444444444332111    11124799999999884  67888876   4799999999985443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=90.61  E-value=0.38  Score=47.93  Aligned_cols=56  Identities=7%  Similarity=-0.009  Sum_probs=42.5

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|  ..+||.+ +        .+|.|.||++...  .+-..+..+..|+|++|+|....|
T Consensus        58 ~~~V~~l~fsp--g~~L~S~-s--------~D~~v~lWd~~~~--~~~~~~~~~~~V~~v~~sp~g~~l  113 (902)
T 2oaj_A           58 RSAIKEMRFVK--GIYLVVI-N--------AKDTVYVLSLYSQ--KVLTTVFVPGKITSIDTDASLDWM  113 (902)
T ss_dssp             CCCEEEEEEET--TTEEEEE-E--------TTCEEEEEETTTC--SEEEEEECSSCEEEEECCTTCSEE
T ss_pred             CCCEEEEEEcC--CCEEEEE-E--------CcCeEEEEECCCC--cEEEEEcCCCCEEEEEECCCCCEE
Confidence            45899999999  3344443 2        3689999999875  466677777899999999986554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=90.45  E-value=0.24  Score=47.70  Aligned_cols=56  Identities=21%  Similarity=0.273  Sum_probs=40.5

Q ss_pred             CcceeEeecCCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe-CCCCeEEEEecCC
Q psy17341        163 NRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKF  227 (232)
Q Consensus       163 ~R~VT~IdWsP~~-~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~-~~S~V~~v~FsP~  227 (232)
                      ...|++|+|+|.. ..+|+++.         .+|.|.||++...+..+...+. ...+|.|++|+|.
T Consensus        53 ~~~V~~l~~s~~~~~~~l~s~s---------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~  110 (753)
T 3jro_A           53 EGPVWRVDWAHPKFGTILASCS---------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH  110 (753)
T ss_dssp             SSCEEEEEECCTTSCSEEEEEE---------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG
T ss_pred             cCceEEEEecCCCCCCEEEEEe---------CCCeEEEEECCCCcccccccccCCCCCeEEEEECCC
Confidence            4689999998864 56666553         2689999999875112444444 3569999999997

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=90.29  E-value=0.55  Score=39.67  Aligned_cols=59  Identities=10%  Similarity=-0.086  Sum_probs=46.2

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      .+..+++++|+|...-|++++.         .+|.|.+|++...  .+...+.....+.++.|+|....|
T Consensus       114 ~~~~~~~~~~s~dg~~l~~~~~---------~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~dg~~l  172 (391)
T 1l0q_A          114 TGKSPLGLALSPDGKKLYVTNN---------GDKTVSVINTVTK--AVINTVSVGRSPKGIAVTPDGTKV  172 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEET---------TTTEEEEEETTTT--EEEEEEECCSSEEEEEECTTSSEE
T ss_pred             CCCCcceEEECCCCCEEEEEeC---------CCCEEEEEECCCC--cEEEEEecCCCcceEEECCCCCEE
Confidence            3457899999998766655542         3589999999874  577888888899999999987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.28  E-value=0.37  Score=47.95  Aligned_cols=60  Identities=22%  Similarity=0.268  Sum_probs=43.3

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ....|++++|+|.....++++-+        .+|.|.+|++...  .+...+.. ...|.+++|+|....|
T Consensus       698 ~~~~v~~~~~~~~~~~~~l~sg~--------~d~~v~vwd~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l  758 (1249)
T 3sfz_A          698 HSEQVNCCHFTNKSNHLLLATGS--------NDFFLKLWDLNQK--ECRNTMFGHTNSVNHCRFSPDDELL  758 (1249)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEEE--------TTSCEEEEETTSS--SEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             CCCcEEEEEEecCCCceEEEEEe--------CCCeEEEEECCCc--chhheecCCCCCEEEEEEecCCCEE
Confidence            34579999999976555554433        3689999999885  45555554 4699999999976544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=90.15  E-value=0.5  Score=41.15  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=40.4

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKF  227 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~  227 (232)
                      -...|++|+|+|..  +++++.         .+|.|.||++...  .+...|.. .+.|.|++|+|.
T Consensus       161 h~~~V~~l~~~~~~--~l~s~s---------~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~  214 (464)
T 3v7d_B          161 HDGGVWALKYAHGG--ILVSGS---------TDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEY  214 (464)
T ss_dssp             CSSCEEEEEECSTT--EEEEEE---------TTSCEEEEETTTT--EEEEEECCCSSCEEEEEEEES
T ss_pred             CCcCEEEEEEcCCC--EEEEEe---------CCCCEEEEECCCC--cEEEEECCCCCccEEEEEecC
Confidence            45689999999865  555442         3689999999875  46677764 579999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=90.13  E-value=0.6  Score=40.03  Aligned_cols=65  Identities=9%  Similarity=-0.124  Sum_probs=49.0

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      +..+++++|+|.-.-|++++++.....  ..+|.|.+|++...  .+...+.....+.+++|+|....|
T Consensus       253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~--~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          253 IGLPRGLLLSKDGKELYIAQFSASNQE--SGGGRLGIYSMDKE--KLIDTIGPPGNKRHIVSGNTENKI  317 (433)
T ss_dssp             CSEEEEEEECTTSSEEEEEEEESCTTC--SCCEEEEEEETTTT--EEEEEEEEEECEEEEEECSSTTEE
T ss_pred             CCCceEEEEcCCCCEEEEEECCCCccc--cCCCeEEEEECCCC--cEEeeccCCCCcceEEECCCCCEE
Confidence            456999999998887888887765422  35899999999874  355555556689999999987554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=89.69  E-value=0.54  Score=46.76  Aligned_cols=57  Identities=12%  Similarity=0.135  Sum_probs=42.1

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|||.-. ++|++ +        .+|.|.||++...  .+...+.. ...|+|++|+|....|
T Consensus       615 ~~~v~~~~~s~~~~-~l~s~-~--------~d~~i~vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l  672 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQ-RIASC-G--------ADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYI  672 (1249)
T ss_dssp             SSCEEEEEECTTSS-EEEEE-E--------TTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cccEEEEEECCCCC-EEEEE-e--------CCCeEEEEECCCC--CEEEEeccCCCCEEEEEEecCCCEE
Confidence            45799999999644 44443 1        3689999999884  56666665 4599999999986544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=88.71  E-value=1.3  Score=37.95  Aligned_cols=68  Identities=9%  Similarity=-0.116  Sum_probs=48.5

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCC-----CCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKE-----APNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~-----~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....|.+|+|+|.-.-|++++.+.+..     .....+|.|.+|++...  .+...+.....|.+++|+|....|
T Consensus       343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~~~~~~~~~~~~~~s~dg~~l  415 (433)
T 3bws_A          343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD--TVKEFWEAGNQPTGLDVSPDNRYL  415 (433)
T ss_dssp             CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT--EEEEEEECSSSEEEEEECTTSCEE
T ss_pred             CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC--cEEEEecCCCCCceEEEcCCCCEE
Confidence            345689999999866566655543311     11234799999999874  577778888899999999976544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=87.19  E-value=1.8  Score=42.41  Aligned_cols=56  Identities=14%  Similarity=0.236  Sum_probs=38.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCC-CCc----eEEeCC-----CCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-TPE----FEFFCQ-----SPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~-~PE----yvf~~~-----S~V~~v~FsP~h  228 (232)
                      .+.|.+++|||.- .++|++         ..+|.|.||+++..+. .|+    ..+...     +.|++++|+|..
T Consensus       129 ~~sv~svafSPDG-~~LAsg---------s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          129 SRTYHCFEWNPIE-SSIVVG---------NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             TTCEEEEEECSSS-SCEEEE---------ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             cccEEEEEEcCCC-CEEEEE---------cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc
Confidence            4579999999964 455444         1379999999988521 254    333322     489999999964

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=86.13  E-value=0.54  Score=36.98  Aligned_cols=57  Identities=16%  Similarity=0.022  Sum_probs=40.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC--CCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ--SPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~--S~V~~v~FsP~hPnL  231 (232)
                      ...|++++|+|.-. ++|++          .+|.|.+|++..+ ..+..++...  ..|.+++|+|....|
T Consensus        41 ~~~v~~~~~spdg~-~l~~~----------~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l   99 (297)
T 2ojh_A           41 PELFEAPNWSPDGK-YLLLN----------SEGLLYRLSLAGD-PSPEKVDTGFATICNNDHGISPDGALY   99 (297)
T ss_dssp             SSCCEEEEECTTSS-EEEEE----------ETTEEEEEESSSC-CSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred             CcceEeeEECCCCC-EEEEE----------cCCeEEEEeCCCC-CCceEeccccccccccceEECCCCCEE
Confidence            45799999999755 44443          1368999999883 4566666554  578999999976543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=85.78  E-value=1.8  Score=38.30  Aligned_cols=59  Identities=8%  Similarity=-0.046  Sum_probs=43.5

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ..|++++|||.-.-|+.+++..       ..+.|.+|++...  .+..+......|.+++|+|.-..|
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~-------~~~~i~~~d~~tg--~~~~l~~~~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANG--AVRQVASFPRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTC--CEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CcceeeEEcCCCCEEEEEEecC-------CCcEEEEEECCCC--cEEEeecCCCcccCEEEcCCCCEE
Confidence            4799999999876566555432       2468999999874  455565566789999999976543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=84.68  E-value=1.5  Score=38.03  Aligned_cols=52  Identities=12%  Similarity=0.087  Sum_probs=34.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAK  226 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP  226 (232)
                      ...|++++|+|...-|++++          .+|.|.||++...  .+...+.. ...|.++.|++
T Consensus       310 ~~~v~~~~~~~~~~~l~sg~----------~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~  362 (464)
T 3v7d_B          310 TDRIYSTIYDHERKRCISAS----------MDTTIRIWDLENG--ELMYTLQGHTALVGLLRLSD  362 (464)
T ss_dssp             SSCEEEEEEETTTTEEEEEE----------TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECS
T ss_pred             CCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC--cEEEEEeCCCCcEEEEEEcC
Confidence            45799999999655444332          2577888888764  46666654 34788888774

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=84.42  E-value=2.3  Score=36.98  Aligned_cols=54  Identities=15%  Similarity=0.188  Sum_probs=38.6

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEE------eCCCCeEEEEecCCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF------FCQSPVLSCCFAKFFF  229 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf------~~~S~V~~v~FsP~hP  229 (232)
                      ....|++++|++   .+++++-         .+|.|.||++...  .+...+      .....|.+++|+|...
T Consensus       361 ~~~~v~~~~~~~---~~l~s~~---------~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          361 HQSAVTCLQFNK---NFVITSS---------DDGTVKLWDLKTG--EFIRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             CSSCEEEEEECS---SEEEEEE---------TTSEEEEEETTTC--CEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             CCCCEEEEEECC---CEEEEEe---------CCCeEEEEECCCC--ceeeeeeccccCCCCceEEEEEecCCEE
Confidence            345799999974   5666553         3699999999985  344444      3456899999998643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=84.08  E-value=1.4  Score=37.70  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=23.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK  205 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~p  205 (232)
                      ...|++|+|+|.-.=|++++          .+|.|.||++..+
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s----------~d~~v~iw~~~~~  272 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVS----------DKWTLHVFEIFND  272 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEE----------TTCEEEEEESSCC
T ss_pred             CCcEEEEEECCCCCEEEEEE----------CCCEEEEEEccCC
Confidence            45899999999654333322          2589999999875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=80.63  E-value=3  Score=32.61  Aligned_cols=61  Identities=11%  Similarity=0.014  Sum_probs=39.5

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....+.+++|+|.-.-|+.++..         +|.+.||.+......+..+......|.++.|+|....|
T Consensus       127 ~~~~~~~~~~spdg~~l~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  187 (297)
T 2ojh_A          127 KNLPSYWHGWSPDGKSFTYCGIR---------DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI  187 (297)
T ss_dssp             SSSSEEEEEECTTSSEEEEEEEE---------TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred             cCCCccceEECCCCCEEEEEECC---------CCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence            33458999999987655544432         36688888654312334444445789999999976544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=80.50  E-value=1.3  Score=41.18  Aligned_cols=53  Identities=9%  Similarity=-0.109  Sum_probs=40.9

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCc
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFL  230 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPn  230 (232)
                      ..|++++|||.  ..++++..          |.|.+|++...  .+..+......|.+++|||.--.
T Consensus        82 ~~v~~~~~spd--~~~~~~~~----------~~i~~~d~~~~--~~~~l~~~~~~~~~~~~SpdG~~  134 (706)
T 2z3z_A           82 FPSFRTLDAGR--GLVVLFTQ----------GGLVGFDMLAR--KVTYLFDTNEETASLDFSPVGDR  134 (706)
T ss_dssp             CCCEEEEETTT--TEEEEEET----------TEEEEEETTTT--EEEEEECCTTCCTTCEECTTSSE
T ss_pred             cCceeEEECCC--CeEEEEEC----------CEEEEEECCCC--ceEEccCCcccccCCcCCCCCCE
Confidence            67999999998  56666543          78999999774  46666666778999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.82
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.64
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.23
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.2
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.13
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.05
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.76
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.5
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	95.4
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	95.13
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.11
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.02
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	94.51
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	94.42
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.31
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.21
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.12
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.3
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.14
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	93.07
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	92.23
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.18
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	91.74
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	91.15
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	87.04
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	83.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	80.38

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.95  E-value=0.00067  Score=53.05  Aligned_cols=57  Identities=23%  Similarity=0.362  Sum_probs=42.9

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ...|+||+|||..+ +||.+-         .+|.|.||++...  .+...+.. ..+|.+++|+|....|
T Consensus        55 ~~~I~~l~~s~~~~-~l~sgs---------~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l  112 (340)
T d1tbga_          55 LAKIYAMHWGTDSR-LLVSAS---------QDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             SSCEEEEEECTTSS-EEEEEE---------TTTEEEEEETTTT--EEEEEEECSCSCEEEEEECTTSSEE
T ss_pred             CCCEEEEEECCCCC-EEEEEE---------CCCceeeeecccc--eeEEEEecccccEEeeEeeccceee
Confidence            34799999999654 554431         3699999999874  56667766 4589999999987654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.0015  Score=49.73  Aligned_cols=58  Identities=17%  Similarity=0.049  Sum_probs=44.8

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLYA  232 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnLI  232 (232)
                      ...|++|+|+|...=|++++          .+|.|.||++...  .+...|.+ ..+|++++|+|..+.|+
T Consensus       247 ~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~--~~~~~~~~h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         247 DNWVRGVLFHSGGKFILSCA----------DDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEE----------TTTEEEEECCTTS--CCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             CCCEEEEEECCCCCEEEEEE----------CCCeEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            45799999999765343332          3689999999985  68888887 46999999999877653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00039  Score=53.60  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=41.1

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCce--EEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF--EFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEy--vf~~~S~V~~v~FsP~hPnL  231 (232)
                      .-.||+|+|||.. .+||++.         .||.|.||++...+...++  .+.-..+|+|++|+|..+++
T Consensus        11 ~d~I~~l~fsp~~-~~L~s~s---------~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_          11 KDYISDIKIIPSK-SLLLITS---------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             SSCEEEEEEEGGG-TEEEEEE---------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred             CCCEEEEEEeCCC-CEEEEEE---------CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCE
Confidence            3479999999964 4666652         2699999998764211222  23356799999999987654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.0022  Score=48.82  Aligned_cols=56  Identities=14%  Similarity=0.144  Sum_probs=43.0

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      .+|++|+|||..+ +||.+  +       .+|.|.||++...  .+...|.. ...|.+++|+|....+
T Consensus        18 ~~I~~l~~sp~~~-~l~s~--s-------~Dg~i~iWd~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~   74 (317)
T d1vyhc1          18 SPVTRVIFHPVFS-VMVSA--S-------EDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLL   74 (317)
T ss_dssp             SCEEEEEECSSSS-EEEEE--E-------SSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEEcCCCC-EEEEE--e-------CCCeEEEEECCCC--CEEEEEeCCCCcEEEEeeecccccc
Confidence            4899999999754 55543  1       3689999999874  67888876 4689999999976543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.23  E-value=0.0019  Score=53.55  Aligned_cols=58  Identities=10%  Similarity=0.043  Sum_probs=40.4

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      -+|||++|||.- .+||++  .       .+|.|.||++...+......|.. ..+|.|++|+|....|
T Consensus         8 ~pIt~~~~s~dg-~~la~~--~-------~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l   66 (371)
T d1k8kc_           8 EPISCHAWNKDR-TQIAIC--P-------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI   66 (371)
T ss_dssp             SCCCEEEECTTS-SEEEEE--C-------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEE
T ss_pred             CCeEEEEECCCC-CEEEEE--e-------CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEE
Confidence            479999999964 566654  1       25899999997641123344554 4699999999975443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.20  E-value=0.0056  Score=50.01  Aligned_cols=58  Identities=14%  Similarity=0.043  Sum_probs=42.8

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ..|+||+|||. -.+||++-         .+|.|.||++...+......+.. ..+|.|++|+|....|
T Consensus        59 ~~v~~~~~sp~-g~~latg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l  117 (311)
T d1nr0a1          59 HQTTVAKTSPS-GYYCASGD---------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI  117 (311)
T ss_dssp             SCEEEEEECTT-SSEEEEEE---------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred             CCEEEEEEeCC-CCeEeccc---------cCceEeeeeeeccccccccccccccCcccccccccccccc
Confidence            48999999996 45665442         36899999999872223455665 4699999999987654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.13  E-value=0.0026  Score=49.84  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=39.4

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe--CCCCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~--~~S~V~~v~FsP~h  228 (232)
                      ..+|+||+|||. ..+||.+  +       .+|.|.||++...  .+..++.  ....|++++|+|..
T Consensus        12 ~~~V~~l~~s~d-g~~l~s~--s-------~Dg~v~vWd~~~~--~~~~~~~~~h~~~v~~v~~~~~g   67 (299)
T d1nr0a2          12 NKAITALSSSAD-GKTLFSA--D-------AEGHINSWDISTG--ISNRVFPDVHATMITGIKTTSKG   67 (299)
T ss_dssp             SSCEEEEEECTT-SSEEEEE--E-------TTSCEEEEETTTC--CEEECSSCSCSSCEEEEEECTTS
T ss_pred             CCCcEEEEECCC-CCEEEEE--c-------CCCeEEEEECCCC--cEEEEEcCCCCCcEEEEEeeccc
Confidence            458999999995 3455543  2       3689999999874  4556653  24689999999864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.05  E-value=0.0069  Score=47.03  Aligned_cols=59  Identities=19%  Similarity=0.144  Sum_probs=43.7

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      .....|++++|+|... +|+++.         .+|.|.||++...  .+...|.. ..+|+|++|+|..+.|
T Consensus       268 ~~~~~i~~~~~s~~~~-~l~~g~---------~dg~i~iwd~~~~--~~~~~~~~H~~~V~~l~~s~d~~~l  327 (340)
T d1tbga_         268 NIICGITSVSFSKSGR-LLLAGY---------DDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             TCCSCEEEEEECSSSC-EEEEEE---------TTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             cccCceEEEEECCCCC-EEEEEE---------CCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEeCCCCEE
Confidence            3455699999998654 444432         3589999999874  57777876 5699999999987655

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0035  Score=48.94  Aligned_cols=65  Identities=9%  Similarity=0.042  Sum_probs=40.1

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~h  228 (232)
                      ...|++|+|+|........+....-......+|.|.||++..+ .....++.. ..+|+++.|+|.+
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-~~~~~~~~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWETPS  270 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEETTSSTTCEEEEEEEETT
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-CeEEEEeCCCCCCeEEEEECCCC
Confidence            4579999999965432222111111111124689999999887 566666665 4689999999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0082  Score=45.82  Aligned_cols=55  Identities=18%  Similarity=0.126  Sum_probs=36.7

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFF  228 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~h  228 (232)
                      ....|++|+|||..+= ||.+-         .+|.|.||++...  .....|.....+.+++|+|..
T Consensus       250 ~~~~v~~l~~sp~~~~-lasg~---------~Dg~v~vWD~~~~--~~l~~~~~~~~~~~~~~s~~~  304 (342)
T d1yfqa_         250 LAYPVNSIEFSPRHKF-LYTAG---------SDGIISCWNLQTR--KKIKNFAKFNEDSVVKIACSD  304 (342)
T ss_dssp             SCCCEEEEEECTTTCC-EEEEE---------TTSCEEEEETTTT--EEEEECCCCSSSEEEEEEECS
T ss_pred             ccccceeEEecCCccE-EEEEC---------CCCEEEEEECCCC--cEEEEecCCCCCEEEEEEeCC
Confidence            3447899999998764 43331         3699999999985  344555444555566666643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.016  Score=46.79  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=43.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ...|++|+|+|... +|+++-         .+|.|.||++..-  .+-..+.-...|++++|+|....|
T Consensus       265 ~~~i~~v~~s~~g~-~l~s~s---------~Dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         265 ESCVLSLKFAYCGK-WFVSTG---------KDNLLNAWRTPYG--ASIFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             SSCEEEEEECTTSS-EEEEEE---------TTSEEEEEETTTC--CEEEEEECSSCEEEEEECTTSCEE
T ss_pred             ccccceEEECCCCC-EEEEEe---------CCCeEEEEECCCC--CEEEEccCCCCEEEEEEeCCCCEE
Confidence            45799999999765 444321         3689999999884  677788888999999999975544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.022  Score=42.50  Aligned_cols=51  Identities=12%  Similarity=0.227  Sum_probs=38.4

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAK  226 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP  226 (232)
                      ..+.|+|++|+   ..+||.+  +       .||.|.||++...  .+..+|.. ..+|+|++|++
T Consensus        14 ~~~~V~c~~~d---~~~l~sg--s-------~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~v~~~~   65 (293)
T d1p22a2          14 TSKGVYCLQYD---DQKIVSG--L-------RDNTIKIWDKNTL--ECKRILTGHTGSVLCLQYDE   65 (293)
T ss_dssp             SCCCEEEEECC---SSEEEEE--E-------SSSCEEEEESSSC--CEEEEECCCSSCEEEEECCS
T ss_pred             CCCCEEEEEEc---CCEEEEE--e-------CCCeEEEEECCCC--cEEEEEecCCCCEeeeeccc
Confidence            44679999886   3455554  1       3699999999874  68888887 45999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.11  E-value=0.0066  Score=50.09  Aligned_cols=59  Identities=17%  Similarity=0.281  Sum_probs=41.9

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ..+|++|+|+|.- .+||.+ +        .+|.|.||++......+...+.. ...|.|++|+|....|
T Consensus        51 ~~~V~~l~fsp~~-~~l~s~-s--------~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l  110 (371)
T d1k8kc_          51 NGQVTGVDWAPDS-NRIVTC-G--------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF  110 (371)
T ss_dssp             SSCEEEEEEETTT-TEEEEE-E--------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEE
T ss_pred             CCCEEEEEECCCC-CEEEEE-E--------CCCeEEEEeecccccccccccccccccccccccccccccc
Confidence            3589999999964 455543 1        36899999998752345555544 4589999999976543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.02  E-value=0.014  Score=47.54  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=42.9

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ..|++|+|+|..+.+||++-         .+|.|.+|+++..  .+...+.. ..+|+++.|+|....|
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs---------~d~~i~i~d~~~~--~~~~~~~~~~~~i~~v~~~p~~~~l  204 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGS---------DDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLF  204 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEE---------TTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccceeeecccc---------ccccccccccccc--ccccccccccccccccccCcccccc
Confidence            47999999998877666432         3689999999974  45555554 5699999999976543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.035  Score=45.91  Aligned_cols=60  Identities=20%  Similarity=0.151  Sum_probs=39.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEe--------------CCCCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--------------CQSPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~--------------~~S~V~~v~FsP~h  228 (232)
                      ..+|++|+|||.-. +||++-..+      ..|.|.||++...  .+...+.              -...|++++|+|..
T Consensus       231 ~~~V~~l~~spdg~-~l~sgs~D~------t~~~i~lwd~~~g--~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~  301 (393)
T d1sq9a_         231 SNSIRSVKFSPQGS-LLAIAHDSN------SFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  301 (393)
T ss_dssp             CCCEEEEEECSSTT-EEEEEEEET------TEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             cceEEEcccccccc-eeeeecCCC------Ccceeeecccccc--eeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence            35799999999654 444432211      3488999998763  3333332              23579999999987


Q ss_pred             CcC
Q psy17341        229 FLY  231 (232)
Q Consensus       229 PnL  231 (232)
                      +.|
T Consensus       302 ~~l  304 (393)
T d1sq9a_         302 ETL  304 (393)
T ss_dssp             SEE
T ss_pred             Cee
Confidence            655

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.036  Score=45.81  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=42.3

Q ss_pred             ccCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-------CCCeEEEEecCCCCcC
Q psy17341        160 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-------QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       160 ~SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-------~S~V~~v~FsP~hPnL  231 (232)
                      .+....|+||+|+|.  .+||++.         .+|.|.||++..-  .|-+.+..       ..+|.|++|||....|
T Consensus       181 ~~~~~~~~~v~~s~d--g~lasgs---------~Dg~i~iwd~~~~--~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         181 MTPSQFATSVDISER--GLIATGF---------NNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             SSSCCCCCEEEECTT--SEEEEEC---------TTSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             cCCCCcEEEEEECCC--CEEEEEe---------CCCcEEEEeeccc--ccccccccccccccccceEEEccccccccee
Confidence            356677999999985  3665432         3689999999873  46555543       3589999999975443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.048  Score=41.82  Aligned_cols=49  Identities=10%  Similarity=0.158  Sum_probs=38.3

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKF  227 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~  227 (232)
                      .|||++++.   ++||.+  +       .+|.|.||++...  .+...|.. ..+|.|++|+|.
T Consensus        15 vitc~~~~~---~~l~tg--s-------~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~l~~s~~   64 (355)
T d1nexb2          15 VITCLQFED---NYVITG--A-------DDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHG   64 (355)
T ss_dssp             CEEEEEEET---TEEEEE--E-------TTTEEEEEETTTT--EEEEEEECCSSCEEEEEEETT
T ss_pred             cEEEEEECC---CEEEEE--e-------CCCeEEEEECCCC--cEEEEEECCCCCEEEEEEcCC
Confidence            479999874   567665  2       3699999999874  68888887 469999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.04  Score=44.24  Aligned_cols=58  Identities=12%  Similarity=0.088  Sum_probs=44.3

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....|++|+|+|...-++.++          .+|.|.+|+++..  .+-..+.....|++++|+|....|
T Consensus       182 ~~~~v~~l~~s~~~~~~~~~~----------~d~~v~i~d~~~~--~~~~~~~~~~~i~~l~~~~~~~~l  239 (337)
T d1gxra_         182 HTDGASCIDISNDGTKLWTGG----------LDNTVRSWDLREG--RQLQQHDFTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTT--EEEEEEECSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccc----------ccccccccccccc--eeecccccccceEEEEEccccccc
Confidence            356799999998755433322          3589999999885  577788889999999999976544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.029  Score=45.38  Aligned_cols=60  Identities=20%  Similarity=0.239  Sum_probs=39.7

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCC------ceEEeC-CCCeEEEEecCCCCc
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP------EFEFFC-QSPVLSCCFAKFFFL  230 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~P------Eyvf~~-~S~V~~v~FsP~hPn  230 (232)
                      ...||+++|+|...+.++++=+        .+|.|.||++...+...      ...+.. ..+|.+++|+|....
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs--------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  129 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGD--------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR  129 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEE--------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCCEEEEEEeeCCCCCEEEEEe--------CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCc
Confidence            4589999999987665555422        46999999986531111      112222 458999999987544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.30  E-value=0.06  Score=41.66  Aligned_cols=60  Identities=8%  Similarity=0.050  Sum_probs=41.7

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ....+++++|+|. ..+|+++.         .+|.|.+|++...+..+...+..+..|++++|+|....|
T Consensus       135 ~~~~~~~~~~s~~-~~~l~~g~---------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  194 (299)
T d1nr0a2         135 ISYNSSCVALSND-KQFVAVGG---------QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL  194 (299)
T ss_dssp             CSSCEEEEEECTT-SCEEEEEE---------TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccc-cccccccc---------ccccccccccccccccccccccccccccccccccccccc
Confidence            4557889999985 34555543         358999999987522233444557899999999976544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.072  Score=40.57  Aligned_cols=48  Identities=10%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             ceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecC
Q psy17341        165 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAK  226 (232)
Q Consensus       165 ~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP  226 (232)
                      .++|++|+.   ++||.+  +       .+|.|.||++...  .+...|... .+|++++|+|
T Consensus        19 V~s~~~~~g---~~l~sg--s-------~Dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~~~   67 (342)
T d2ovrb2          19 VITCLQFCG---NRIVSG--S-------DDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRD   67 (342)
T ss_dssp             CEEEEEEET---TEEEEE--E-------TTSCEEEEETTTC--CEEEECCCCSSCEEEEEEET
T ss_pred             eEEEEEECC---CEEEEE--e-------CCCeEEEEECCCC--CEEEEEeCCCCCEEEEEeCC
Confidence            357888874   455543  2       3799999999874  688888774 5999999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.07  E-value=0.053  Score=41.82  Aligned_cols=54  Identities=13%  Similarity=0.172  Sum_probs=37.5

Q ss_pred             cceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCC--ceEEeCCCCeEEEEecCCCC
Q psy17341        164 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP--EFEFFCQSPVLSCCFAKFFF  229 (232)
Q Consensus       164 R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~P--Eyvf~~~S~V~~v~FsP~hP  229 (232)
                      ..|++|+|+|.. .+||++.         .+|.|.+|++... ..+  .+.+| ...|.|++|+|...
T Consensus       163 ~~v~~~~~s~~~-~~l~~g~---------~dg~i~i~d~~~~-~~~~~~~~~h-~~~v~~~~~~p~~~  218 (287)
T d1pgua2         163 AKPSYISISPSE-TYIAAGD---------VMGKILLYDLQSR-EVKTSRWAFR-TSKINAISWKPAEK  218 (287)
T ss_dssp             SCEEEEEECTTS-SEEEEEE---------TTSCEEEEETTTT-EEEECCSCCC-SSCEEEEEECCCC-
T ss_pred             CceeEEEeccCc-ccccccc---------ccccccceeeccc-cccccccccc-ccccceeeeccccc
Confidence            469999999875 4555553         3588999999885 322  23333 35799999998653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.08  Score=42.14  Aligned_cols=58  Identities=12%  Similarity=0.073  Sum_probs=41.0

Q ss_pred             cCCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCc
Q psy17341        161 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFL  230 (232)
Q Consensus       161 SK~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPn  230 (232)
                      .....|++|+|||... +||++.         .+|.|.+|+....  .....+.. ...|.++.|++....
T Consensus       119 ~~~~~V~~l~~s~~~~-~l~s~~---------~dg~v~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~  177 (388)
T d1erja_         119 SSDLYIRSVCFSPDGK-FLATGA---------EDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDK  177 (388)
T ss_dssp             CCCCBEEEEEECTTSS-EEEEEE---------TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CCCCCEEEEEECCCCC-cceecc---------ccccccccccccc--cccccccccccccccccccccccc
Confidence            3455799999999644 444432         3689999999875  34555554 568999999987554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.18  E-value=0.11  Score=40.55  Aligned_cols=60  Identities=7%  Similarity=-0.052  Sum_probs=45.1

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCCcC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLY  231 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hPnL  231 (232)
                      ..-.|+++.|||.-.-|+.++...        ...|.+|++...  .+..+......|.+++|+|....|
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~--------g~~v~v~d~~~~--~~~~~~~~~~~v~~~~~spdg~~l  100 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTRE--------GDFLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFA  100 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETT--------EEEEEEEETTTC--CEEECCCCCCSEEEEEECTTSSEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCC--------CCEEEEEECCCC--cEEEeeCCCceEEeeeeccccccc
Confidence            445799999999766665555421        247999999874  577777788899999999986554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.22  Score=39.41  Aligned_cols=52  Identities=19%  Similarity=0.270  Sum_probs=38.6

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCC-CCeEEEEecC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAK  226 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~-S~V~~v~FsP  226 (232)
                      ...|++++|+|.-. +|+++.         .+|.|.||++...  .+...|... ..|+++++++
T Consensus       308 ~~~v~~~~~s~~~~-~l~sg~---------~dg~i~vwd~~~~--~~~~~l~~H~~~V~~~~~~~  360 (388)
T d1erja_         308 KDFVLSVATTQNDE-YILSGS---------KDRGVLFWDKKSG--NPLLMLQGHRNSVISVAVAN  360 (388)
T ss_dssp             SSCEEEEEECGGGC-EEEEEE---------TTSEEEEEETTTC--CEEEEEECCSSCEEEEEECS
T ss_pred             cceEEEEEECCCCC-EEEEEe---------CCCEEEEEECCCC--cEEEEEeCCCCCEEEEEEec
Confidence            35789999998643 444432         3589999999874  688888874 5899998765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.15  E-value=0.18  Score=40.36  Aligned_cols=59  Identities=8%  Similarity=0.058  Sum_probs=42.4

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC-CCCeEEEEecCCCCcC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFFFLY  231 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~-~S~V~~v~FsP~hPnL  231 (232)
                      ..+|++|+|+|.-.-|++++-+        .++.+.+|....  ..+-..+.. ...|.+++|+|.+|.+
T Consensus       115 ~~~v~~v~~s~~~~~l~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1         115 AGPISDISWDFEGRRLCVVGEG--------RDNFGVFISWDS--GNSLGEVSGHSQRINACHLKQSRPMR  174 (325)
T ss_dssp             SSCEEEEEECTTSSEEEEEECC--------SSCSEEEEETTT--CCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             cCcEEEEEECCCCCccceeecc--------ccceEEEEeecc--cccceeeeecccccccccccccccce
Confidence            3479999999987777766633        245677777764  345555655 3589999999999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=0.19  Score=38.34  Aligned_cols=33  Identities=12%  Similarity=-0.004  Sum_probs=22.8

Q ss_pred             CcEEEEEeCCCCCCCCc-eEEeCCCCeEEEEecCC
Q psy17341        194 DGVCLIWNTKFKKTTPE-FEFFCQSPVLSCCFAKF  227 (232)
Q Consensus       194 ~GlVlvWslk~pk~~PE-yvf~~~S~V~~v~FsP~  227 (232)
                      +|.|.||+++.. .-.. .+..-..+|++++|+|.
T Consensus       302 d~~i~vwd~~tg-~~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         302 ENQFNIYNLRSG-KLVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             TTEEEEEETTTC-CBCCSCTTTTCSEEEEEEEETT
T ss_pred             CCEEEEEECCCC-CEEEEEecCCCCCEEEEEEcCC
Confidence            689999999874 2221 22333568999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=1.6  Score=32.65  Aligned_cols=52  Identities=15%  Similarity=0.208  Sum_probs=34.3

Q ss_pred             CcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeC------CCCeEEEEecCCC
Q psy17341        163 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC------QSPVLSCCFAKFF  228 (232)
Q Consensus       163 ~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~------~S~V~~v~FsP~h  228 (232)
                      ...+.++.|+|   ++++++-         .+|.|.||++...  ..-+.|..      ...|.+++|+|..
T Consensus       260 ~~~~~~~~~~~---~~~~s~s---------~Dg~i~iwd~~tg--~~i~~~~~~~~~~~~~~v~~v~~s~~~  317 (342)
T d2ovrb2         260 QSAVTCLQFNK---NFVITSS---------DDGTVKLWDLKTG--EFIRNLVTLESGGSGGVVWRIRASNTK  317 (342)
T ss_dssp             SSCEEEEEECS---SEEEEEE---------TTSEEEEEETTTC--CEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred             eeceeecccCC---CeeEEEc---------CCCEEEEEECCCC--CEEEEEecccCCCCCCCEEEEEECCCC
Confidence            34667777764   4555442         3699999999874  34444432      3469999999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.38  E-value=1.1  Score=34.44  Aligned_cols=66  Identities=8%  Similarity=-0.121  Sum_probs=44.1

Q ss_pred             CCcceeEeecCCCCCCeEEEEeccCCCCCCCCCcEEEEEeCCCCCCCCceEEeCCCCeEEEEecCCCC
Q psy17341        162 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFF  229 (232)
Q Consensus       162 K~R~VT~IdWsP~~~eL~aVSYgs~~~~~~~~~GlVlvWslk~pk~~PEyvf~~~S~V~~v~FsP~hP  229 (232)
                      ....+++++|+|.-.-|+.++...........++.+.+|+++..  .+..++.....+.++.|+|.--
T Consensus       126 ~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~--~~~~~~~~~~~~~~~~~spdg~  191 (360)
T d1k32a3         126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFAATTENSHDYAPAFDADSK  191 (360)
T ss_dssp             SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--EEEECSCSSSBEEEEEECTTSC
T ss_pred             ccccccchhhccceeeeeeeccccccceeeccccceeeeccccC--ceeeecccccccccccccCCCC
Confidence            34578899999976544444444433223345688999999884  3555556667889999998643