Psyllid ID: psy1735

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MSLLVRAEADDTRRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESEDERFDDMSDGSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQFSQNLQPQAKENFYKTRDVE
ccccccccccccccEEEEEEEccccccEEcccEEEEEEEEcccccEEEEEEEccccccEEEEcccccccccccccEEEEEEcccccccEEEccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHcEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccc
cccEEcccccccccEEEEEEEccccccccccccEEEEEEEccccccEEEEEEcccccEEEEEEEccccccHccccEEEEEEccccccEEEEccccccHHHHHHHHHHHHccccccccccccccccccccHccccccccccccccccHccHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHEEEcccccccccHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHEEcccHHHccccHHHHHHHHHHHccHHHHHHHHcccccccccccHcEcccccc
MSLLVRAEADDTRRRVKLYALnadrqwddkgtghVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICqvqgkdpsveITQDIIEEsederfddmsdgsppielppceiNRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMcedlenlpglhCLYDILKSIFLLNKTqlldilfsddiiLDVVgcleydpaltspkrhrhylrtnskfkevvpisnsdllgKIHQTYRIQYIQdvvlptpslfednilsTVSSFIYFNKIEIVTLIQFSqnlqpqakenfyktrdve
msllvraeaddtrrRVKLyalnadrqwddkgtgHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKIcqvqgkdpsvEITQDIIEESederfddmsdgsppielpPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYdpaltspkrhrhylrtnskfkevvpISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQfsqnlqpqakenfyktrdve
MSLLVRAEADDTRRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESEDERFDDMSDGSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQlldilfsddiildVVGCLEYDPALTSPKRHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQFSQNLQPQAKENFYKTRDVE
**************RVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGK**********************************EINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQFSQN****************
*****************LYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSV***********************PIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQFSQNLQPQAKENFYKT****
MSLLVRAEADDTRRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESEDERFDDMSDGSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQFSQNLQPQAKENFYKTRDVE
*********DDTRRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPS*******I***EDERFDDMSDGSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQFSQNLQPQAKE*FYK*****
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MSLLVRAEADDTRRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESEDERFDDMSDGSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQFSQNLQPQAKENFYKTRDVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
Q9VFS5 980 Serine/threonine-protein yes N/A 0.958 0.327 0.672 1e-144
Q4S6U8 818 Serine/threonine-protein N/A N/A 0.952 0.389 0.640 1e-135
Q6IN85 833 Serine/threonine-protein yes N/A 0.952 0.382 0.640 1e-135
Q5SP90 818 Serine/threonine-protein yes N/A 0.952 0.389 0.640 1e-135
Q6P2K6 820 Serine/threonine-protein yes N/A 0.952 0.389 0.637 1e-135
Q6INN7 822 Serine/threonine-protein N/A N/A 0.952 0.388 0.629 1e-133
Q5MIZ7 849 Serine/threonine-protein no N/A 0.958 0.378 0.623 1e-127
Q922R5 820 Serine/threonine-protein no N/A 0.958 0.391 0.620 1e-127
Q6DFT3 820 Serine/threonine-protein no N/A 0.958 0.391 0.620 1e-126
Q7ZX60 820 Serine/threonine-protein N/A N/A 0.958 0.391 0.620 1e-126
>sp|Q9VFS5|PP4R3_DROME Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Drosophila melanogaster GN=flfl PE=1 SV=4 Back     alignment and function desciption
 Score =  512 bits (1319), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/357 (67%), Positives = 293/357 (82%), Gaps = 36/357 (10%)

Query: 11  DTRRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAY 70
           DTRRRVKLYALNA+RQWDD+GTGHVSS YVE+ KG+SLLVRAE+DG+LLLESKIQ DTAY
Sbjct: 4   DTRRRVKLYALNAERQWDDRGTGHVSSTYVERLKGISLLVRAESDGSLLLESKIQPDTAY 63

Query: 71  QKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESEDERF 130
           QKQQDTLIVWSE DN+DLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDI+EESEDERF
Sbjct: 64  QKQQDTLIVWSEGDNFDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIVEESEDERF 123

Query: 131 DDMSDGSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMC 190
           +DMSD +PPIELPPCE++RLE+I E +Q+CL++P+RKEKL+ A+ESE YI+KL+ +FH+C
Sbjct: 124 EDMSDTAPPIELPPCELSRLEDISETIQSCLSTPLRKEKLSMALESESYIKKLLNLFHVC 183

Query: 191 EDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHRHYL 250
           EDL+N  GLH L++I K+IFLLNK  L +I+F+DD I DVVGCLEYDP+++ PK+HR YL
Sbjct: 184 EDLDNTEGLHHLFEIFKNIFLLNKNALFEIMFADDTIFDVVGCLEYDPSVSQPKKHRQYL 243

Query: 251 RTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLF-EDNILSTVSSFIYFNKIE 309
           +  +KF+E VPI N DLL KIHQT+R+QYIQD++LPTPS+F EDN+L+T+SSFI+FNK+E
Sbjct: 244 KQLAKFREAVPIKNLDLLAKIHQTFRVQYIQDIILPTPSVFVEDNMLNTLSSFIFFNKVE 303

Query: 310 IVTLIQ-----------------------------------FSQNLQPQAKENFYKT 331
           IVT+IQ                                   ++QNLQPQ K++FYKT
Sbjct: 304 IVTMIQDDERYLLDVFAVLTDPTTGDAKRRDTVLFLKEFCNYAQNLQPQGKDSFYKT 360
Regulatory subunit of serine/threonine-protein phosphatase 4. The probable PP4 complex Pp4-19C-PPP4R2r-flfl (PPP4C-PPP4R2-PPP4R3) is required to prevent caspase induced cell death (in vitro). May be involved in DNA damage repair. Key mediator specific for the localization of mira and associated cell fate determinants during both interphase and mitosis. Nuclear Flfl is required to exclude mira/pros from the nucleus when inefficiently bound to the cytoskeleton/cortex, whereas cytosolic or membrane-associated flfl is required for the cortical association and asymmetric localization of mira/pros/brat/stau at metaphase and anaphase.
Drosophila melanogaster (taxid: 7227)
>sp|Q4S6U8|PP4R3_TETNG Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Tetraodon nigroviridis GN=smek1 PE=3 SV=1 Back     alignment and function description
>sp|Q6IN85|P4R3A_HUMAN Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens GN=SMEK1 PE=1 SV=1 Back     alignment and function description
>sp|Q5SP90|PP4R3_DANRE Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio GN=smek1 PE=1 SV=1 Back     alignment and function description
>sp|Q6P2K6|P4R3A_MOUSE Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Mus musculus GN=Smek1 PE=1 SV=1 Back     alignment and function description
>sp|Q6INN7|PP4R3_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus laevis GN=smek1 PE=2 SV=1 Back     alignment and function description
>sp|Q5MIZ7|P4R3B_HUMAN Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Homo sapiens GN=SMEK2 PE=1 SV=2 Back     alignment and function description
>sp|Q922R5|P4R3B_MOUSE Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Mus musculus GN=Smek2 PE=2 SV=2 Back     alignment and function description
>sp|Q6DFT3|PP4R3_XENTR Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus tropicalis GN=smek2 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX60|P4R3A_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3-A OS=Xenopus laevis GN=smek2-a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
307200591 814 SMEK-like protein 1 [Harpegnathos saltat 0.958 0.394 0.707 1e-150
332028074 777 Serine/threonine-protein phosphatase 4 r 0.958 0.413 0.707 1e-150
322784350 769 hypothetical protein SINV_11676 [Solenop 0.958 0.417 0.710 1e-149
307183136 735 SMEK-like protein 1 [Camponotus floridan 0.958 0.436 0.705 1e-149
156542387 843 PREDICTED: serine/threonine-protein phos 0.958 0.380 0.707 1e-148
380025920 778 PREDICTED: LOW QUALITY PROTEIN: serine/t 0.958 0.412 0.691 1e-145
383863759 812 PREDICTED: serine/threonine-protein phos 0.958 0.395 0.691 1e-145
189239244 778 PREDICTED: similar to falafel CG9351-PA 0.958 0.412 0.688 1e-144
270009769 786 hypothetical protein TcasGA2_TC009066 [T 0.958 0.408 0.688 1e-144
221379206 973 falafel, isoform D [Drosophila melanogas 0.958 0.329 0.672 1e-143
>gi|307200591|gb|EFN80732.1| SMEK-like protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/356 (70%), Positives = 293/356 (82%), Gaps = 35/356 (9%)

Query: 11  DTRRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAY 70
           DTRRRVKLYALNADRQWDD+GTGHVSS YV++ KG+SLLVRAE+DG++LLES+IQ DTAY
Sbjct: 3   DTRRRVKLYALNADRQWDDRGTGHVSSSYVDRLKGISLLVRAESDGSVLLESRIQPDTAY 62

Query: 71  QKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESEDERF 130
           QKQQDTLIVWSE DN+DLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDI+EESEDERF
Sbjct: 63  QKQQDTLIVWSEGDNFDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIVEESEDERF 122

Query: 131 DDMSDGSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMC 190
           DDMSD +PPIELPPCE++RLE+I EL++ CL SP+RKEKLA A+ESEGYI+KL+ +FH C
Sbjct: 123 DDMSDAAPPIELPPCELSRLEDINELIENCLTSPMRKEKLAVALESEGYIKKLLNLFHTC 182

Query: 191 EDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHRHYL 250
           EDLEN+ GLH LYDI K+IFLLNK  L +++FSDD I DVVGCLEY+P L+ PKRHR YL
Sbjct: 183 EDLENIEGLHHLYDIFKNIFLLNKNALFEVMFSDDTIFDVVGCLEYEPTLSQPKRHREYL 242

Query: 251 RTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEI 310
           R  ++FK+ +PI+N++LL KIHQTYR+QYIQDVVLPTPS+FEDN+LST+SSFI+FNK+EI
Sbjct: 243 RQLARFKQAIPITNAELLAKIHQTYRVQYIQDVVLPTPSVFEDNMLSTLSSFIFFNKVEI 302

Query: 311 VTLIQ-----------------------------------FSQNLQPQAKENFYKT 331
           VTLIQ                                   FSQNLQPQ KE FYKT
Sbjct: 303 VTLIQDDEKFLTELFRQLTDDATLDSKRRDLVLFLKEFCNFSQNLQPQGKEGFYKT 358

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332028074|gb|EGI68125.1| Serine/threonine-protein phosphatase 4 regulatory subunit 3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322784350|gb|EFZ11324.1| hypothetical protein SINV_11676 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307183136|gb|EFN70053.1| SMEK-like protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|156542387|ref|XP_001600817.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380025920|ref|XP_003696711.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Apis florea] Back     alignment and taxonomy information
>gi|383863759|ref|XP_003707347.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|189239244|ref|XP_974259.2| PREDICTED: similar to falafel CG9351-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270009769|gb|EFA06217.1| hypothetical protein TcasGA2_TC009066 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|221379206|ref|NP_650304.2| falafel, isoform D [Drosophila melanogaster] gi|21428434|gb|AAM49877.1| LD13350p [Drosophila melanogaster] gi|220903075|gb|AAF54974.2| falafel, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
FB|FBgn0024555 980 flfl "falafel" [Drosophila mel 0.910 0.311 0.725 1.5e-127
UNIPROTKB|F6R1L1 820 SMEK1 "Uncharacterized protein 0.904 0.369 0.698 1.2e-119
UNIPROTKB|G3V5Z3 706 SMEK1 "Uncharacterized protein 0.904 0.429 0.698 1.2e-119
UNIPROTKB|Q6IN85 833 SMEK1 "Serine/threonine-protei 0.904 0.363 0.698 1.2e-119
UNIPROTKB|F1SD90 820 SMEK1 "Uncharacterized protein 0.904 0.369 0.698 1.2e-119
MGI|MGI:1915984 820 Smek1 "SMEK homolog 1, suppres 0.904 0.369 0.695 3.2e-119
UNIPROTKB|F1NPW9 844 SMEK1 "Uncharacterized protein 0.904 0.359 0.695 5.2e-119
UNIPROTKB|Q5MIZ7 849 SMEK2 "Serine/threonine-protei 0.910 0.359 0.675 5.3e-117
UNIPROTKB|E1BFZ3 767 SMEK2 "Uncharacterized protein 0.910 0.397 0.675 1.4e-116
MGI|MGI:2144474 820 Smek2 "SMEK homolog 2, suppres 0.910 0.371 0.672 1.8e-116
FB|FBgn0024555 flfl "falafel" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1206 (429.6 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
 Identities = 222/306 (72%), Positives = 268/306 (87%)

Query:    11 DTRRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAY 70
             DTRRRVKLYALNA+RQWDD+GTGHVSS YVE+ KG+SLLVRAE+DG+LLLESKIQ DTAY
Sbjct:     4 DTRRRVKLYALNAERQWDDRGTGHVSSTYVERLKGISLLVRAESDGSLLLESKIQPDTAY 63

Query:    71 QKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESEDERF 130
             QKQQDTLIVWSE DN+DLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDI+EESEDERF
Sbjct:    64 QKQQDTLIVWSEGDNFDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIVEESEDERF 123

Query:   131 DDMSDGSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMC 190
             +DMSD +PPIELPPCE++RLE+I E +Q+CL++P+RKEKL+ A+ESE YI+KL+ +FH+C
Sbjct:   124 EDMSDTAPPIELPPCELSRLEDISETIQSCLSTPLRKEKLSMALESESYIKKLLNLFHVC 183

Query:   191 EDLENLPGLHCLYDILKSIFLLNKTQXXXXXXXXXXXXXVVGCLEYDPALTSPKRHRHYL 250
             EDL+N  GLH L++I K+IFLLNK               VVGCLEYDP+++ PK+HR YL
Sbjct:   184 EDLDNTEGLHHLFEIFKNIFLLNKNALFEIMFADDTIFDVVGCLEYDPSVSQPKKHRQYL 243

Query:   251 RTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLF-EDNILSTVSSFIYFNKIE 309
             +  +KF+E VPI N DLL KIHQT+R+QYIQD++LPTPS+F EDN+L+T+SSFI+FNK+E
Sbjct:   244 KQLAKFREAVPIKNLDLLAKIHQTFRVQYIQDIILPTPSVFVEDNMLNTLSSFIFFNKVE 303

Query:   310 IVTLIQ 315
             IVT+IQ
Sbjct:   304 IVTMIQ 309
GO:0007391 "dorsal closure" evidence=IMP
GO:0016601 "Rac protein signal transduction" evidence=IGI
GO:0006281 "DNA repair" evidence=IMP
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0007405 "neuroblast proliferation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0008105 "asymmetric protein localization" evidence=IMP
GO:0005634 "nucleus" evidence=IDA
GO:0055059 "asymmetric neuroblast division" evidence=IMP
UNIPROTKB|F6R1L1 SMEK1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3V5Z3 SMEK1 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IN85 SMEK1 "Serine/threonine-protein phosphatase 4 regulatory subunit 3A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SD90 SMEK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1915984 Smek1 "SMEK homolog 1, suppressor of mek1 (Dictyostelium)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPW9 SMEK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5MIZ7 SMEK2 "Serine/threonine-protein phosphatase 4 regulatory subunit 3B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFZ3 SMEK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2144474 Smek2 "SMEK homolog 2, suppressor of mek1 (Dictyostelium)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6P2K6P4R3A_MOUSENo assigned EC number0.63760.95220.3890yesN/A
Q9VFS5PP4R3_DROMENo assigned EC number0.67220.95820.3275yesN/A
Q5SP90PP4R3_DANRENo assigned EC number0.64040.95220.3899yesN/A
Q6IN85P4R3A_HUMANNo assigned EC number0.64040.95220.3829yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
pfam04802193 pfam04802, SMK-1, Component of IIS longevity pathw 9e-71
>gnl|CDD|147119 pfam04802, SMK-1, Component of IIS longevity pathway SMK-1 Back     alignment and domain information 
 Score =  218 bits (557), Expect = 9e-71
 Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 38/194 (19%)

Query: 174 IESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGC 233
           +E+E YI KL+ +FHMCEDLENL  LH L +I+K++ LLN +Q+L+I+ SD+ I+ VVGC
Sbjct: 1   LENEDYIPKLIPLFHMCEDLENLDDLHLLCNIVKTLILLNDSQILEIILSDENIMGVVGC 60

Query: 234 LEYDPALTSPK-RHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFE 292
           LEYDP    PK  HR +L  N+KFKEV+PI N +L  KIHQTYR+QY++DVVL  P + +
Sbjct: 61  LEYDPEFPQPKANHRQFLTQNAKFKEVIPIKNPELRQKIHQTYRLQYLKDVVL--PRVLD 118

Query: 293 DNILSTVSSFIYFNKIEIVTLIQ-----------------------------------FS 317
           DN  ST++SFI+FN++EIVTL+Q                                    +
Sbjct: 119 DNTFSTLNSFIFFNQVEIVTLLQDDEKFLEELFALLTDSSTSDERRRDLVLFLHEFCNIA 178

Query: 318 QNLQPQAKENFYKT 331
           ++LQPQ++  F+KT
Sbjct: 179 KSLQPQSRSTFFKT 192

SMK-1 is a component of the IIs longevity pathway which regulates aging in C.elegans. Specifically, SMK-1 influences DAF-16-dependant regulation of the aging process by regulating the transcriptional specificity of DAF-16 activity. SMK-1 plays a role in longevity by modulating the transcriptional specificity of DAF-16. Length = 193

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
PF04802193 SMK-1: Component of IIS longevity pathway SMK-1; I 100.0
KOG2175|consensus 458 100.0
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 99.04
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 98.71
smart00160130 RanBD Ran-binding domain. Domain of apporximately 98.28
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 98.18
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 98.12
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 96.77
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 95.87
PF06058122 DCP1: Dcp1-like decapping family; InterPro: IPR010 93.92
cd01205105 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. 91.92
COG5171211 YRB1 Ran GTPase-activating protein (Ran-binding pr 90.63
KOG2724|consensus487 89.36
cd01206111 Homer Homer type EVH1 domain. Homer type EVH1 doma 88.1
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=4.9e-59  Score=421.29  Aligned_cols=157  Identities=55%  Similarity=1.048  Sum_probs=154.3

Q ss_pred             HhchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCCcchhhHHhccceeeeeeeecccCCCCCCCc-chhHhhhc
Q psy1735         174 IESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPK-RHRHYLRT  252 (335)
Q Consensus       174 i~~~~Yi~kL~~lF~~cEd~ed~~~L~~l~~Ivk~il~lNd~~l~E~llsDe~~~~vvG~LEYDp~~~~~k-~HR~fL~~  252 (335)
                      |++++||+||+++|++||+++|+++||+||+|+|+|+++|+++|+|.|++|+++|+|||||||||++|++| +||+||++
T Consensus         1 ~~~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~   80 (193)
T PF04802_consen    1 IENENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKE   80 (193)
T ss_pred             CcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCcceeeecCChhHHHhhhhhhccceeeeeecCCCCCccchhhhhHHHHHHhcHHHHHHHHH-----------------
Q psy1735         253 NSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQ-----------------  315 (335)
Q Consensus       253 ~a~FkeVvpi~d~~l~~kIHqtyRlqYLKDvvL~~~~~lDd~~~s~LnS~I~~N~~eIv~~l~-----------------  315 (335)
                      +++|||||||+|+++++|||||||+|||||||||  |++||+++|+|||+|||||++||++||                 
T Consensus        81 ~~~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~--r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~  158 (193)
T PF04802_consen   81 KAKFKEVIPIPDPELLSKIHQTYRLQYLKDVVLP--RFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPS  158 (193)
T ss_pred             CCCCceeeecCCHHHHHHHHHHHhHHHHHHHHcc--cccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999  799999999999999999999999999                 


Q ss_pred             ------------------hhccCCchhHHHHhhcc
Q psy1735         316 ------------------FSQNLQPQAKENFYKTR  332 (335)
Q Consensus       316 ------------------~s~~lq~~~r~~~~~~l  332 (335)
                                        +||+|||++|.+||++|
T Consensus       159 ~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~f~~~L  193 (193)
T PF04802_consen  159 TSDERRRDGVKFLHEFCSLAKNLQPQSRSEFFKTL  193 (193)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCcchHHHHHhcC
Confidence                              99999999999999997

>KOG2175|consensus Back     alignment and domain information
>cd00835 RanBD Ran-binding domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information
>smart00160 RanBD Ran-binding domain Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping Back     alignment and domain information
>cd01205 WASP WASP-type EVH1 domain Back     alignment and domain information
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2724|consensus Back     alignment and domain information
>cd01206 Homer Homer type EVH1 domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 1e-05
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 8e-04
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130 Back     alignment and structure
 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 15  RVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQ 73
           RVKL+  +A+  QW ++G G++  +  E +  + +L+R E    +     I T    +  
Sbjct: 14  RVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPL 73

Query: 74  Q--DTLIVWSERDNYD-------LALSFQEKAGCDEIWEKICQVQ 109
              D   +W   D  D       LA  F+     +E  +K  + Q
Sbjct: 74  SGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQ 118
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 99.24
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 98.66
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 98.62
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 98.61
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 98.53
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 98.5
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 98.46
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 98.44
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 98.42
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 97.77
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 97.48
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 97.46
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 97.36
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 97.1
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 96.97
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 96.82
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 96.07
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 96.0
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 92.57
2lyd_A134 Decapping protein 1; DCP1, XRN1, transcription-pro 91.52
2qkl_A127 DCP1 protein, SPBC3B9.21 protein; protein-protein 89.43
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
Probab=99.24  E-value=3.1e-11  Score=102.46  Aligned_cols=98  Identities=21%  Similarity=0.348  Sum_probs=85.6

Q ss_pred             CCcEEEEEeCC-CCCceeeceEEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceec--cEEEEEecC-----C
Q psy1735          13 RRRVKLYALNA-DRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWSER-----D   84 (335)
Q Consensus        13 ~~RVKvY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQq--eTlIvW~e~-----~   84 (335)
                      ..|+|||.++. +++|.++|+|.+........+...|++|.+..+.++|+++|.++-.|+.+.  +..++|+-.     +
T Consensus        26 ~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~  105 (134)
T 1rrp_B           26 CNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADEL  105 (134)
T ss_dssp             EEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSS
T ss_pred             EEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCC
Confidence            37999999973 679999999999987776678899999999999999999999999999874  689999632     2


Q ss_pred             --CCceeeeccCccchHHHHHHHHHHhc
Q psy1735          85 --NYDLALSFQEKAGCDEIWEKICQVQG  110 (335)
Q Consensus        85 --~~dlALSFQe~~GC~~iW~~I~~vQ~  110 (335)
                        ...+||.|..++.|+++++.|.+.|.
T Consensus       106 ~k~~~~~irfk~~e~A~~f~~~~~e~~~  133 (134)
T 1rrp_B          106 PKPEQLAIRFKTPEEAALFKCKFEEAQS  133 (134)
T ss_dssp             CEEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             CceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence              35789999999999999999998874
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Back     alignment and structure
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster} Back     alignment and structure
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 335
d1mkea1114 b.55.1.4 (A:31-144) Actin regulatory protein WASP 7e-28
d1xkea1118 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H 7e-13
d1egxa_115 b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei 1e-08
d2crfa1137 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H 2e-08
d1rrpb_134 b.55.1.3 (B:) Nuclear pore complex protein Nup358 7e-05
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (257), Expect = 7e-28
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 1/97 (1%)

Query: 15  RVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQ 74
            V+LYA + +  W  K +G    +     +   L +    DG LL E ++  +  Y   +
Sbjct: 17  VVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPR 76

Query: 75  DTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGK 111
                +   D   +AL+F  +    +  + +  + G+
Sbjct: 77  GYFHTF-AGDTCQVALNFANEEEAKKFRKAVTDLLGR 112
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 99.8
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 99.27
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 98.88
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 98.67
d2crfa1137 Ran binding protein 3 {Human (Homo sapiens) [TaxId 98.55
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 98.47
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 98.43
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 94.79
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 94.04
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=9.3e-20  Score=149.35  Aligned_cols=97  Identities=20%  Similarity=0.379  Sum_probs=90.9

Q ss_pred             CcEEEEEeCCCCCceeeceEEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceeccEEEEEecCCCCceeeecc
Q psy1735          14 RRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQ   93 (335)
Q Consensus        14 ~RVKvY~L~~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQ   93 (335)
                      -.||||.+++++.|+++|||+++..++...++.+|.|.++.++++|+++.|.++..|++|++|+++|.+ ++..+|||||
T Consensus        16 avv~lY~~~~~~~W~~~~tG~v~~v~d~~~~~~~l~v~d~~~~~vi~e~eI~~~~~Y~k~~~~Fh~~~~-~~~~~GL~F~   94 (114)
T d1mkea1          16 AVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAG-DTCQVALNFA   94 (114)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEEC-SSSEEEEEES
T ss_pred             EEEEEEEECCCCeEEECCceEEEEEEECCCCeEEEEEEECCCCeEEEEEEccCCcEEeccCCeEEEEEc-CCceEEEeeC
Confidence            369999998888999999999999998888899999999999999999999999999999999999965 4578999999


Q ss_pred             CccchHHHHHHHHHHhcC
Q psy1735          94 EKAGCDEIWEKICQVQGK  111 (335)
Q Consensus        94 e~~GC~~iW~~I~~vQ~~  111 (335)
                      ++++|.++|+.|+++|++
T Consensus        95 ~~~eA~~f~~~i~~~~~~  112 (114)
T d1mkea1          95 NEEEAKKFRKAVTDLLGR  112 (114)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999999875
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure