Psyllid ID: psy17376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MLLLRKHEVYHKVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHKSPVPCS
Secondary Structure (PSIPRED)
cEEccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEccccEEEcccccccccccccccccccccccEEcccccEccccEEEccccccccccccccccccccccccccccccccccccEEEccccccccEEEcccccccccccccccccccccccccEcccccEccccEEcccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlllrkhevyhkvldvprtqarqkvscnssrpifqcnqtqCILEtslcngipecgngrdesvamcgeynirdllpnplgclpnefrcsnscidhlkrcdrtqdcelgedeidcktymcpvshykcsndfcipldkvcnfiddcgdnsdemeCSLFTFLSFRlnkkiprksisMTSAKMNQQALLTGNENFDLWVAGFcadalkpsrnftkhpralfplphkspvpcs
Flexible Loop (DISEMBL)
mlllrkhevyhkvldvprtqarqKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTkhpralfplphkspvpcs
Low Complexity Region (SEG)
MLLLRKHEVYHKVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHKSPVPCS
Disordered region (IsUnstruct)
******HEVYHKVLDVPRT****KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIP*************QALLTGNENFDLWVAGFCADALKP***********************
Disordered Region (DISOPRED)
MLLLRKHEVYHKVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTK****L*****KS*****
Disordered Region (DISEMBL)
MLLLRKHEVYHKVLDVPRT*********SSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHKSPVPCS
Disordered Region (DISPRO)
MLLLRKHEVYHKVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHKSP**C*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLLRKHEVYHKVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHKSPVPCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
P46023	1115	G-protein coupled recepto	N/A	N/A	0.488	0.099	0.460	8e-23
P98165	863	Very low-density lipoprot	yes	N/A	0.497	0.130	0.391	1e-15
P35953	873	Very low-density lipoprot	yes	N/A	0.497	0.129	0.391	1e-13
P20063	837	Low-density lipoprotein r	no	N/A	0.537	0.145	0.368	2e-13
P98166	873	Very low-density lipoprot	yes	N/A	0.497	0.129	0.366	5e-13
P98155	873	Very low-density lipoprot	yes	N/A	0.497	0.129	0.375	6e-13
Q98931	917	Low-density lipoprotein r	no	N/A	0.488	0.121	0.381	8e-13
P98156	873	Very low-density lipoprot	yes	N/A	0.497	0.129	0.366	1e-12
P98160	4391	Basement membrane-specifi	no	N/A	0.550	0.028	0.358	2e-12
P35952	879	Low-density lipoprotein r	no	N/A	0.497	0.128	0.357	2e-12

>sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 OS=Lymnaea stagnalis PE=2 SV=1

 Score =  107 bits (266), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 77/128 (60%), Gaps = 17/128 (13%)

Query: 29  SSRPIFQCN--QTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFR 86
           S    F C+    QC+L  S C+G+ +C NG DESV  CG             CL +EF+
Sbjct: 39  SVEGTFHCDDGMLQCVLMGSKCDGVSDCENGMDESVETCG-------------CLQSEFQ 85

Query: 87  CSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPV-SHYKCSNDFCIPLDKVCNFIDDCG 144
           C+++ CID + RCDR  DC  G DE +C  Y+CP+ +H K  N FC+P DK C+F+DDCG
Sbjct: 86  CNHTTCIDKILRCDRNDDCSNGLDERECDIYICPLGTHVKWHNHFCVPRDKQCDFLDDCG 145

Query: 145 DNSDEMEC 152
           DNSDE  C
Sbjct: 146 DNSDEKIC 153

Might directly transduce signals carried by large extracellular (lipo)protein(complexe)s into neuronal events.
Lymnaea stagnalis (taxid: 6523)

>sp|P98165|VLDLR_CHICK Very low-density lipoprotein receptor OS=Gallus gallus GN=VLDLR PE=1 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
           F CN  QC+     C+G P+C +G DES  +C   ++R    N + C P     S  CI 
Sbjct: 95  FVCNSGQCVPNRWQCDGDPDCEDGSDESAELC---HMRTCRVNEISCGPQ----STQCIP 147

Query: 94  HLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
              +CD  +DC+ GEDE +C    C  + + CS+  CI    VCN  DDC D SDE+EC+
Sbjct: 148 VSWKCDGEKDCDSGEDEENCGNVTCSAAEFTCSSGQCISKSFVCNGQDDCSDGSDELECA 207

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Gallus gallus (taxid: 9031)

>sp|P35953|VLDLR_RABIT Very low-density lipoprotein receptor OS=Oryctolagus cuniculus GN=VLDLR PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
           F CN  QCI     C+G P+C +G DES   C   ++R    N + C       S  CI 
Sbjct: 77  FVCNNGQCIPNRWQCDGDPDCEDGSDESPEQC---HMRTCRINEISCGAR----STQCIP 129

Query: 94  HLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
              RCD   DC+ GEDE +C    C    + CS+  CI  + VCN  DDC D SDE++C+
Sbjct: 130 VSWRCDGESDCDSGEDEENCGNVTCSSDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCA 189

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Oryctolagus cuniculus (taxid: 9986)

>sp|P20063|LDLR_RABIT Low-density lipoprotein receptor (Fragment) OS=Oryctolagus cuniculus GN=LDLR PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-SNSCI 92
           F+CN + C+     C+G P+C +G DE  A CG          P  C  +EF C S  C+
Sbjct: 140 FRCNSSSCVPALWACDGEPDCDDGSDEWPARCGARPSPQPGRGP--CSRHEFHCGSGECV 197

Query: 93  DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
               RCD   DC  G DE DC    C    ++CS+  CI   + C+   DCGD SDE+ C
Sbjct: 198 HASWRCDGDADCRDGSDERDCAAATCRPDEFQCSDGTCIHGSRQCDQQQDCGDMSDEVGC 257

Query: 153 SLFTF 157
              T 
Sbjct: 258 VNVTL 262

Binds LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits.

Oryctolagus cuniculus (taxid: 9986)

>sp|P98166|VLDLR_RAT Very low-density lipoprotein receptor OS=Rattus norvegicus GN=Vldlr PE=2 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
           F C   QC+     C+G P+C +G DES   C   ++R    N + C       S  CI 
Sbjct: 77  FVCKNGQCVPNRWQCDGDPDCEDGSDESPEQC---HMRTCRINEISCGAR----STQCIP 129

Query: 94  HLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
              RCD   DC+ GEDE +C    C    + CS+  C+  + VCN  DDC D SDE++C+
Sbjct: 130 ESWRCDGENDCDNGEDEENCGNITCSADEFTCSSGRCVSRNFVCNGQDDCDDGSDELDCA 189

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Rattus norvegicus (taxid: 10116)

>sp|P98155|VLDLR_HUMAN Very low-density lipoprotein receptor OS=Homo sapiens GN=VLDLR PE=1 SV=1

 Score = 74.3 bits (181), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 7/120 (5%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
           F CN  QC+     C+G P+C +G DES   C   ++R    + + C  +    S  CI 
Sbjct: 77  FVCNNGQCVPSRWKCDGDPDCEDGSDESPEQC---HMRTCRIHEISCGAH----STQCIP 129

Query: 94  HLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
              RCD   DC+ GEDE +C    C    + CS+  CI  + VCN  DDC D SDE++C+
Sbjct: 130 VSWRCDGENDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCA 189

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Homo sapiens (taxid: 9606)

>sp|Q98931|LRP8_CHICK Low-density lipoprotein receptor-related protein 8 OS=Gallus gallus GN=LRP8 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 64/131 (48%), Gaps = 20/131 (15%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
           FQC+   CI    +C+G   CG+G DE               +PL C PNEF+C+NS CI
Sbjct: 154 FQCSNKTCISINFVCDGYNNCGDGSDEKKC------------SPLTCSPNEFQCNNSVCI 201

Query: 93  DHLKRCDRTQDCELGEDE------IDCKTY-MCPVSHYKCSNDFCIPLDKVCNFIDDCGD 145
             L  CD   DCE   DE       D K +  C    ++C N  CI L+  C+  +DC D
Sbjct: 202 PQLWVCDNQADCEDHSDESIERCGYDAKAFNTCAAHEFQCGNGECILLNWKCDGDEDCKD 261

Query: 146 NSDEMECSLFT 156
            SDE +C L T
Sbjct: 262 KSDEQDCPLVT 272

Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. Also binds alpha2-macroglobulin. LRP8 participates in transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development.

Gallus gallus (taxid: 9031)

>sp|P98156|VLDLR_MOUSE Very low-density lipoprotein receptor OS=Mus musculus GN=Vldlr PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
           F C   QC+     C+G P+C +G DES   C   ++R    N + C       S  CI 
Sbjct: 77  FVCKNGQCVPNRWQCDGDPDCEDGSDESPEQC---HMRTCRINEISCGAR----STQCIP 129

Query: 94  HLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
              RCD   DC+ GEDE +C    C    + CS+  C+  + VCN  DDC D SDE++C+
Sbjct: 130 VSWRCDGENDCDNGEDEENCGNITCSADEFTCSSGRCVSRNFVCNGQDDCDDGSDELDCA 189

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Mus musculus (taxid: 10090)

>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 65/148 (43%), Gaps = 23/148 (15%)

Query: 17  PRTQARQKVSCNSSRPI------FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNI 70
           P T A Q +   S RP+        C    CI    LC+G  +C +G DE    CG    
Sbjct: 267 PVTHAPQPLLPGSVRPLPCGPQEAACRNGHCIPRDYLCDGQEDCEDGSDE--LDCGP--- 321

Query: 71  RDLLPNPLGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTY----MCPVSHYKC 125
                 P  C PNEF C N  C   L RCD   DCE   DE +C T     +C  + ++C
Sbjct: 322 ------PPPCEPNEFPCGNGHCALKLWRCDGDFDCEDRTDEANCPTKRPEEVCGPTQFRC 375

Query: 126 -SNDFCIPLDKVCNFIDDCGDNSDEMEC 152
            S + CIP    C+   DC D SDE  C
Sbjct: 376 VSTNMCIPASFHCDEESDCPDRSDEFGC 403

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Homo sapiens (taxid: 9606)

>sp|P35952|LDLR_RAT Low-density lipoprotein receptor OS=Rattus norvegicus GN=Ldlr PE=2 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 59/126 (46%), Gaps = 13/126 (10%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS---NS 90
           FQC   +CI+   +C+G  EC +G DES   C            + C   EF C    + 
Sbjct: 32  FQCRDGKCIVSKWVCDGSRECPDGSDESPETC----------MSVTCRSGEFSCGGRVSR 81

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI    RCD   DCE G DE+DC    C +  ++C +  CI    VC+   DC D SDE 
Sbjct: 82  CIPDSWRCDGRTDCENGSDELDCSPKTCSLDEFRCQDGKCISRQFVCDQDWDCLDGSDEA 141

Query: 151 ECSLFT 156
            C+  T
Sbjct: 142 HCAATT 147

Binds LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
1169995	1115	RecName: Full=G-protein coupled receptor	0.488	0.099	0.460	5e-21
443690449	1080	hypothetical protein CAPTEDRAFT_92610 [C	0.550	0.115	0.408	9e-20
405972283	585	hypothetical protein CGI_10018795 [Crass	0.334	0.129	0.558	8e-16
331702865	844	vitellogenin receptor [Dicentrarchus lab	0.484	0.130	0.398	8e-15
169646705	866	very low-density lipoprotein receptor pr	0.484	0.127	0.398	4e-14
270016386	1751	hypothetical protein TcasGA2_TC004260 [T	0.559	0.072	0.359	5e-14
37728099	844	vitellogenin receptor [Morone americana]	0.484	0.130	0.398	6e-14
91094565	1731	PREDICTED: similar to low-density lipopr	0.559	0.073	0.359	6e-14
348505126	844	PREDICTED: very low-density lipoprotein	0.484	0.130	0.390	7e-14
45382563	863	very low-density lipoprotein receptor pr	0.497	0.130	0.391	7e-14

>gi|1169995|sp|P46023.1|GR101_LYMST RecName: Full=G-protein coupled receptor GRL101; Flags: Precursor gi|438129|emb|CAA80651.1| G protein-coupled receptor [Lymnaea stagnalis]

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 77/128 (60%), Gaps = 17/128 (13%)

Query: 29  SSRPIFQCN--QTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFR 86
           S    F C+    QC+L  S C+G+ +C NG DESV  CG             CL +EF+
Sbjct: 39  SVEGTFHCDDGMLQCVLMGSKCDGVSDCENGMDESVETCG-------------CLQSEFQ 85

Query: 87  CSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPV-SHYKCSNDFCIPLDKVCNFIDDCG 144
           C+++ CID + RCDR  DC  G DE +C  Y+CP+ +H K  N FC+P DK C+F+DDCG
Sbjct: 86  CNHTTCIDKILRCDRNDDCSNGLDERECDIYICPLGTHVKWHNHFCVPRDKQCDFLDDCG 145

Query: 145 DNSDEMEC 152
           DNSDE  C
Sbjct: 146 DNSDEKIC 153

Source: Lymnaea stagnalis

Species: Lymnaea stagnalis

Genus: Lymnaea

Family: Lymnaeidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443690449|gb|ELT92587.1| hypothetical protein CAPTEDRAFT_92610 [Capitella teleta]

 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 17/142 (11%)

Query: 15  DVPRTQARQKVSCNSSRP---IFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIR 71
           D  +  + + V C+   P      C   QCI     C+G+ +C NG+DESV++CG     
Sbjct: 13  DTDQDTSTKSVLCSDKTPPPDWLPCEDGQCIPLQLTCDGVSQCANGQDESVSICG----- 67

Query: 72  DLLPNPLGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFC 130
                   C  NEF+C+ + CI  L RCD   DC+ G DE +C+T++CP +H KC N  C
Sbjct: 68  --------CQQNEFQCNQTHCISTLLRCDLQSDCKDGTDEENCETHICPPTHVKCDNHAC 119

Query: 131 IPLDKVCNFIDDCGDNSDEMEC 152
           IP D+ C+  DDCGDNSDE  C
Sbjct: 120 IPRDQQCDIKDDCGDNSDEEGC 141

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|405972283|gb|EKC37059.1| hypothetical protein CGI_10018795 [Crassostrea gigas]

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 79  GCLPNEFRC-SNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVC 137
           GCL  EF+C S +CID ++RCDRT+DC  G DE DC TY CP +H KC N +C+P D  C
Sbjct: 6   GCLSTEFQCNSTTCIDLIRRCDRTEDCSDGLDEKDCITYACPPTHGKCKNHYCVPRDNFC 65

Query: 138 NFIDDCGDNSDEMECSL 154
           +  D+CGDNSDE+ C+ 
Sbjct: 66  DIEDNCGDNSDEVNCAY 82

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|331702865|emb|CBX54721.1| vitellogenin receptor [Dicentrarchus labrax]

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 13/123 (10%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNS 90
           F C   QC+ +   C+G P+C +G DESV +C   ++R        C  N+F C   SN 
Sbjct: 74  FVCRNGQCVPKRWHCDGEPDCEDGSDESVEIC---HMRT-------CRVNQFSCGVGSNQ 123

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI    +CD  +DC+ GEDE++C    C  + + C++  CI  + VCN  DDCGD SDE+
Sbjct: 124 CIPFFWKCDGEKDCDSGEDEVNCGNITCAPNEFTCASGRCISRNFVCNGEDDCGDGSDEV 183

Query: 151 ECS 153
           EC+
Sbjct: 184 ECA 186

Source: Dicentrarchus labrax

Species: Dicentrarchus labrax

Genus: Dicentrarchus

Family: Moronidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|169646705|ref|NP_957217.2| very low-density lipoprotein receptor precursor [Danio rerio]

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 64/123 (52%), Gaps = 13/123 (10%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNS 90
           F C   QCI +   C+G P+C +G DES+ MC          +   C  NEF C   S  
Sbjct: 73  FVCRSGQCIPKRWQCDGEPDCEDGSDESIEMC----------HTRTCRVNEFSCGVGSTQ 122

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI    +CD  +DC+ GEDEI+C    C    + CS+  C+    VCN  DDCGD SDE 
Sbjct: 123 CIPVFWKCDGEKDCDNGEDEINCGNITCAPLEFTCSSGRCVSRKFVCNGEDDCGDGSDEQ 182

Query: 151 ECS 153
           +C+
Sbjct: 183 DCA 185

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270016386|gb|EFA12832.1| hypothetical protein TcasGA2_TC004260 [Tribolium castaneum]

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 15/142 (10%)

Query: 12  KVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIR 71
           K+++  R    + ++C++S+  F C   +CI     C+G  +CG+  DE    C  ++  
Sbjct: 502 KLVNEGRMCVAKNLTCDTSK--FYCANGRCISRMWACDGEDDCGDNSDEDTNYCSFHS-- 557

Query: 72  DLLPNPLGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFC 130
                   C PNEFRC+N  CI    +CD   DC+ G DE DC+   C V  + C+N  C
Sbjct: 558 --------CSPNEFRCANGRCIFKSWKCDHENDCKDGSDEKDCQYPPCAVGEFTCANHRC 609

Query: 131 IPLDKVCNFIDDCGDN--SDEM 150
           IP+ +VCN ++DC DN  SDE 
Sbjct: 610 IPMSQVCNGVNDCKDNVTSDET 631

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|37728099|gb|AAO92396.1| vitellogenin receptor [Morone americana]

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 68/123 (55%), Gaps = 13/123 (10%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNS 90
           F C   QC+ +   C+G P+C +G DESV +C   ++R        C  NEF C   S  
Sbjct: 74  FVCRNGQCVPKRWHCDGEPDCEDGSDESVEIC---HMRT-------CRVNEFSCGAGSTQ 123

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI    +CD  +DC+ GEDE+ C    C  + + C++  CI  + VCN  DDCGD SDE+
Sbjct: 124 CIPIFWKCDGEKDCDNGEDEVHCGNITCAPNEFTCASGRCISRNFVCNGEDDCGDGSDEV 183

Query: 151 ECS 153
           EC+
Sbjct: 184 ECA 186

Source: Morone americana

Species: Morone americana

Genus: Morone

Family: Moronidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91094565|ref|XP_967627.1| PREDICTED: similar to low-density lipoprotein receptor (ldl), partial [Tribolium castaneum]

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 15/142 (10%)

Query: 12  KVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIR 71
           K+++  R    + ++C++S+  F C   +CI     C+G  +CG+  DE    C  ++  
Sbjct: 496 KLVNEGRMCVAKNLTCDTSK--FYCANGRCISRMWACDGEDDCGDNSDEDTNYCSFHS-- 551

Query: 72  DLLPNPLGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFC 130
                   C PNEFRC+N  CI    +CD   DC+ G DE DC+   C V  + C+N  C
Sbjct: 552 --------CSPNEFRCANGRCIFKSWKCDHENDCKDGSDEKDCQYPPCAVGEFTCANHRC 603

Query: 131 IPLDKVCNFIDDCGDN--SDEM 150
           IP+ +VCN ++DC DN  SDE 
Sbjct: 604 IPMSQVCNGVNDCKDNVTSDET 625

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348505126|ref|XP_003440112.1| PREDICTED: very low-density lipoprotein receptor [Oreochromis niloticus]

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 13/123 (10%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNS 90
           F C+  QC+ +   C+G P+C +G DES+ +C   ++R        C  NEF C   S  
Sbjct: 74  FVCDNGQCVPKRWHCDGEPDCEDGSDESLDIC---HMRT-------CRMNEFSCGAGSTQ 123

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI    +CD  +DC+ GEDE++C    C  + + C++  CI  + VCN  DDCGD SDE+
Sbjct: 124 CIPVFWKCDGEKDCDNGEDEVNCGNITCAPNEFTCASGRCISRNFVCNGEDDCGDGSDEV 183

Query: 151 ECS 153
           EC+
Sbjct: 184 ECA 186

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|45382563|ref|NP_990560.1| very low-density lipoprotein receptor precursor [Gallus gallus] gi|1730110|sp|P98165.1|VLDLR_CHICK RecName: Full=Very low-density lipoprotein receptor; Short=VLDL receptor; Short=VLDL-R; AltName: Full=Vitellogenin receptor; Short=VTG receptor; Flags: Precursor gi|609266|emb|CAA56505.1| chicken very low density lipoprotein (VLDL)/vitellogenin receptor [Gallus gallus]

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
           F CN  QC+     C+G P+C +G DES  +C   ++R    N + C P     S  CI 
Sbjct: 95  FVCNSGQCVPNRWQCDGDPDCEDGSDESAELC---HMRTCRVNEISCGPQ----STQCIP 147

Query: 94  HLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
              +CD  +DC+ GEDE +C    C  + + CS+  CI    VCN  DDC D SDE+EC+
Sbjct: 148 VSWKCDGEKDCDSGEDEENCGNVTCSAAEFTCSSGQCISKSFVCNGQDDCSDGSDELECA 207

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
UNIPROTKB|P98165	863	VLDLR "Very low-density lipopr	0.533	0.140	0.384	2.7e-19
UNIPROTKB|F1NC45	865	VLDLR "Very low-density lipopr	0.533	0.139	0.384	2.7e-19
ZFIN|ZDB-GENE-040426-803	866	vldlr "very low density lipopr	0.484	0.127	0.406	5.7e-19
UNIPROTKB|Q6X0I2	1782	VgR "Vitellogenin receptor" [S	0.528	0.067	0.389	6.6e-18
UNIPROTKB|F1LZE5	1074	Lrp1b "Protein Lrp1b" [Rattus	0.511	0.108	0.417	1.5e-17
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.506	0.024	0.383	2e-17
UNIPROTKB|F1MIQ2	844	VLDLR "Uncharacterized protein	0.533	0.143	0.369	2.8e-17
UNIPROTKB|F1P787	845	VLDLR "Uncharacterized protein	0.533	0.143	0.369	2.8e-17
UNIPROTKB|F1P783	873	VLDLR "Uncharacterized protein	0.533	0.138	0.369	3e-17
UNIPROTKB|P98155	873	VLDLR "Very low-density lipopr	0.533	0.138	0.369	3.8e-17

UNIPROTKB|P98165 VLDLR "Very low-density lipoprotein receptor" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 50/130 (38%), Positives = 68/130 (52%)

Query:    24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPN 83
             K +C  S   F CN  QC+     C+G P+C +G DES  +C   ++R    N + C P 
Sbjct:    87 KKTCAESD--FVCNSGQCVPNRWQCDGDPDCEDGSDESAELC---HMRTCRVNEISCGPQ 141

Query:    84 EFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDC 143
                 S  CI    +CD  +DC+ GEDE +C    C  + + CS+  CI    VCN  DDC
Sbjct:   142 ----STQCIPVSWKCDGEKDCDSGEDEENCGNVTCSAAEFTCSSGQCISKSFVCNGQDDC 197

Query:   144 GDNSDEMECS 153
              D SDE+EC+
Sbjct:   198 SDGSDELECA 207

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEP

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0030228 "lipoprotein particle receptor activity" evidence=IC

UNIPROTKB|F1NC45 VLDLR "Very low-density lipoprotein receptor" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 50/130 (38%), Positives = 68/130 (52%)

Query:    24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPN 83
             K +C  S   F CN  QC+     C+G P+C +G DES  +C   ++R    N + C P 
Sbjct:    87 KKTCAESD--FVCNSGQCVPNRWQCDGDPDCEDGSDESAELC---HMRTCRVNEISCGPQ 141

Query:    84 EFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDC 143
                 S  CI    +CD  +DC+ GEDE +C    C  + + CS+  CI    VCN  DDC
Sbjct:   142 ----STQCIPVSWKCDGEKDCDSGEDEENCGNVTCSAAEFTCSSGQCISKSFVCNGQDDC 197

Query:   144 GDNSDEMECS 153
              D SDE+EC+
Sbjct:   198 SDGSDELECA 207

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IEA

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IEA

GO:0038025 "reelin receptor activity" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:1900006 "positive regulation of dendrite development" evidence=IEA

ZFIN|ZDB-GENE-040426-803 vldlr "very low density lipoprotein receptor" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 50/123 (40%), Positives = 65/123 (52%)

Query:    34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNS 90
             F C   QCI +   C+G P+C +G DES+ MC   + R        C  NEF C   S  
Sbjct:    73 FVCRSGQCIPKRWQCDGEPDCEDGSDESIEMC---HTRT-------CRVNEFSCGVGSTQ 122

Query:    91 CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
             CI    +CD  +DC+ GEDEI+C    C    + CS+  C+    VCN  DDCGD SDE 
Sbjct:   123 CIPVFWKCDGEKDCDNGEDEINCGNITCAPLEFTCSSGRCVSRKFVCNGEDDCGDGSDEQ 182

Query:   151 ECS 153
             +C+
Sbjct:   183 DCA 185

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6X0I2 VgR "Vitellogenin receptor" [Solenopsis invicta (taxid:13686)]

 Score = 233 (87.1 bits), Expect = 6.6e-18, P = 6.6e-18
 Identities = 51/131 (38%), Positives = 72/131 (54%)

Query:    24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPN 83
             K++C   + +F+C    CI ++ LCNGI +C +G DE   +    N+   L N   C  N
Sbjct:  1092 KIACKMPK-MFKCPNGDCISDSLLCNGINDCNDGSDEVHCLS---NVTTHLVN---CSLN 1144

Query:    84 EFRC--SNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFID 141
             E+RC  ++ C+    RCD   DC   +DE +C TY C  + + C N  CIP   VC+  +
Sbjct:  1145 EYRCLGTDICLPKNVRCDGKNDCPQSDDEQNC-TY-CFENEFACDNKRCIPELWVCDKAN 1202

Query:   142 DCGDNSDEMEC 152
             DCGDNSDE  C
Sbjct:  1203 DCGDNSDEKNC 1213

GO:0004872 "receptor activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

UNIPROTKB|F1LZE5 Lrp1b "Protein Lrp1b" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 56/134 (41%), Positives = 72/134 (53%)

Query:    34 FQC-NQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-C 91
             FQC N+  CI    LC+GI +C +G DE    CG             C  +EF C+NS C
Sbjct:   496 FQCRNKAYCIPIRWLCDGIYDCVDGSDEE--NCGRGGSI--------CRADEFLCNNSLC 545

Query:    92 IDHLKRCDRTQDCELGEDEID--CKTYMCPVSH-YKCSND-FCIPLDKVCNFIDDCGDNS 147
               H   CD   DC    DE+   C  ++CP +  Y+C ND  C+ L+K+CN I+DCGDNS
Sbjct:   546 KLHFWVCDGEDDCGDNSDEVPDMCVKFLCPPTRPYRCRNDRICLQLEKMCNGINDCGDNS 605

Query:   148 DEMECSLFTFLSFR 161
             DE  CS    LSF+
Sbjct:   606 DEEHCS--GTLSFK 617

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 51/133 (38%), Positives = 72/133 (54%)

Query:    27 CNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFR 86
             C  SR  FQCN   C+  + LC+G  +CG+G DE  ++C ++N  D L          F+
Sbjct:  3996 CPESR--FQCNNNLCVSLSDLCDGTDDCGDGSDEDPSVCSDFNC-DTL--------RRFQ 4044

Query:    87 CSNS-CIDHLKRCDRTQDCELGEDEID---C--KTYMCPV-SHYKCSNDFCIPLDKVCNF 139
             CSN  C+   + CD   +C  G DE +   C  K   C + + Y+C+N  CI   +VC+F
Sbjct:  4045 CSNERCVARYQICDGVDNCGDGSDENNMTLCASKQKPCDLYTQYQCANKHCIERSQVCDF 4104

Query:   140 IDDCGDNSDEMEC 152
              DDCGD SDE+ C
Sbjct:  4105 SDDCGDASDELGC 4117

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

UNIPROTKB|F1MIQ2 VLDLR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 223 (83.6 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 48/130 (36%), Positives = 65/130 (50%)

Query:    24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPN 83
             K +C  S   F CN  QC+     C+G P+C +G DES   C   ++R    N + C   
Sbjct:    69 KKTCAESD--FVCNNGQCVPNRWQCDGDPDCEDGSDESPEQC---HMRTCRINEISCGAR 123

Query:    84 EFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDC 143
                 S  CI    RCD   DC+ GEDE +C    C    + CS+  CI  + +CN  DDC
Sbjct:   124 ----STQCIPVSWRCDGENDCDSGEDEENCGNVTCSSDEFTCSSGRCISRNFMCNGQDDC 179

Query:   144 GDNSDEMECS 153
              D SDE++C+
Sbjct:   180 SDGSDELDCA 189

GO:1900006 "positive regulation of dendrite development" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0038025 "reelin receptor activity" evidence=IEA

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IEA

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1P787 VLDLR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 48/130 (36%), Positives = 65/130 (50%)

Query:    24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPN 83
             K +C  S   F CN  QC+     C+G P+C +G DE+   C   ++R    N + C   
Sbjct:    69 KKTCAESD--FVCNNGQCVPNRWQCDGDPDCEDGSDENPEQC---HMRTCRINEISCGAR 123

Query:    84 EFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDC 143
                 S  CI    RCD   DC+ GEDE +C    C    + CS+  CI  + VCN  DDC
Sbjct:   124 ----STQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDC 179

Query:   144 GDNSDEMECS 153
              D SDE++C+
Sbjct:   180 SDGSDELDCA 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1P783 VLDLR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 48/130 (36%), Positives = 65/130 (50%)

Query:    24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPN 83
             K +C  S   F CN  QC+     C+G P+C +G DE+   C   ++R    N + C   
Sbjct:    69 KKTCAESD--FVCNNGQCVPNRWQCDGDPDCEDGSDENPEQC---HMRTCRINEISCGAR 123

Query:    84 EFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDC 143
                 S  CI    RCD   DC+ GEDE +C    C    + CS+  CI  + VCN  DDC
Sbjct:   124 ----STQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDC 179

Query:   144 GDNSDEMECS 153
              D SDE++C+
Sbjct:   180 SDGSDELDCA 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P98155 VLDLR "Very low-density lipoprotein receptor" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 3.8e-17, P = 3.8e-17
 Identities = 48/130 (36%), Positives = 66/130 (50%)

Query:    24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPN 83
             K +C  S   F CN  QC+     C+G P+C +G DES   C   ++R    + + C  +
Sbjct:    69 KKTCAESD--FVCNNGQCVPSRWKCDGDPDCEDGSDESPEQC---HMRTCRIHEISCGAH 123

Query:    84 EFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDC 143
                 S  CI    RCD   DC+ GEDE +C    C    + CS+  CI  + VCN  DDC
Sbjct:   124 ----STQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDC 179

Query:   144 GDNSDEMECS 153
              D SDE++C+
Sbjct:   180 SDGSDELDCA 189

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005041 "low-density lipoprotein receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0007613 "memory" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IDA

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IDA

GO:0034185 "apolipoprotein binding" evidence=ISS;IDA

GO:0001948 "glycoprotein binding" evidence=IPI

GO:0034436 "glycoprotein transport" evidence=IDA

GO:0034437 "glycoprotein transporter activity" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

GO:0048306 "calcium-dependent protein binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0038026 "reelin-mediated signaling pathway" evidence=ISS

GO:1900006 "positive regulation of dendrite development" evidence=ISS

GO:0038025 "reelin receptor activity" evidence=ISS

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	227
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	4e-09
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	4e-07
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	4e-07
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	3e-06
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	1e-04
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	1e-04

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 50.3 bits (121), Expect = 4e-09
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           CP + ++C+N  CIP   VC+  DDCGD SDE  C
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 44.9 bits (107), Expect = 4e-07
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C PNEFRC+N  CI     CD   DC  G DE +C
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDE 149
           CP   ++C N  CIP   VC+ +DDCGD SDE
Sbjct: 2   CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
           C P+EF+C +  CI     CD   DCE G DE +C
Sbjct: 3   CGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 80  CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDE 110
           C P EF+C N  CI     CD   DC  G DE
Sbjct: 2   CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C    ++C +  CIP+  VC+   DC D SDE  C
Sbjct: 3   CGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG1215|consensus	877		99.08
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.08
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.04
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.02
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.01
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.82
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.79
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.73
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.73
KOG1215|consensus	877		98.48
KOG2397|consensus	480		97.37
KOG2397|consensus	480		97.22
KOG3509|consensus	964		95.8
KOG3509|consensus	964		93.05

>KOG1215|consensus

Probab=99.08  E-value=2.1e-10  Score=115.69  Aligned_cols=152  Identities=25%  Similarity=0.453  Sum_probs=111.8

Q ss_pred             eeecCCCCCCCcCC----CccCCCCCCceecC--CCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCC---------
Q psy17376         10 YHKVLDVPRTQARQ----KVSCNSSRPIFQCN--QTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLL---------   74 (227)
Q Consensus        10 cdg~~dc~~~~d~~----~~~C~~~~~~F~C~--~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~---------   74 (227)
                      ..+....+.+.++.    ...|.  ..+|.|.  +++||+..|+|||..+|.+|+||  .+|.........         
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de--~~~~~~~~~~~~~~~~~~~~~  192 (877)
T KOG1215|consen  117 PSSQPLAPDPCAESGNGPCSHCC--LDKFSCRTGSCKCIPGDWLCDGEADCPDGSDE--LNCAVRRCEPRGASLDCIVAI  192 (877)
T ss_pred             cCCCCCCCCcccccCCCCCcccc--CCCCCCcCccccCCCCceeCCCCCccccchhh--hcccccccCccccccccceee
Confidence            33444455555553    23333  6889999  78999999999999999999999  677411100000         


Q ss_pred             -----------------CCCCCC---CCCceecC--CceecCCCccCCcccCCCCCcc--cCCCCCCcCCCceecCCCce
Q psy17376         75 -----------------PNPLGC---LPNEFRCS--NSCIDHLKRCDRTQDCELGEDE--IDCKTYMCPVSHYKCSNDFC  130 (227)
Q Consensus        75 -----------------~~~~~C---~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE--~~C~~~~C~~~~f~C~~g~C  130 (227)
                                       .....+   ....++|.  .+||...++|||..||.+++||  .++....|...++.|.++.|
T Consensus       193 ~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~  272 (877)
T KOG1215|consen  193 KVCDIQHDCADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDC  272 (877)
T ss_pred             eecCcccccccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCC
Confidence                             000001   13567887  4999999999999999999999  46766678888999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCCCCCCCc--CceecCCC
Q psy17376        131 IPLDKVCNFIDDCGDNSDEMECSLFTF--LSFRLNKK  165 (227)
Q Consensus       131 i~~~~~CDg~~DC~DgsDE~~C~~~~C--~~f~C~~~  165 (227)
                      ++..++|+|..||++|+||.+|....+  ..|.|..+
T Consensus       273 ~~~~~~~~g~~d~pdg~de~~~~~~~~~~~~~d~~~~  309 (877)
T KOG1215|consen  273 SDRQKLCDGDLDCPDGLDEDYCKKKLYWSMNVDGSGR  309 (877)
T ss_pred             ccceEEecCccCCCCcccccccccceeeeeecccCCc
Confidence            999999999999999999998875433  45555543

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.08  E-value=7.3e-11  Score=73.81  Aligned_cols=36  Identities=47%  Similarity=1.048  Sum_probs=27.4

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      .|+..+|+|.++.||+..++|||+.||.|||||.+|
T Consensus         2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C   37 (37)
T PF00057_consen    2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC   37 (37)
T ss_dssp             SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred             cCcCCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence            466777888777788888888888888888887654

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.04  E-value=1.3e-10  Score=71.78  Aligned_cols=35  Identities=51%  Similarity=1.145  Sum_probs=27.2

Q ss_pred             cCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       118 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      |++.+|+|.+++||+..++|||+.||.|||||.+|
T Consensus         1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C   35 (35)
T cd00112           1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC   35 (35)
T ss_pred             CCCCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence            34567888888888888888888888888888654

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.02  E-value=1.9e-10  Score=71.92  Aligned_cols=33  Identities=42%  Similarity=1.033  Sum_probs=31.2

Q ss_pred             CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      ..+|+|.++.||+..++|||+.||.|||||  .+|
T Consensus         5 ~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE--~~C   37 (37)
T PF00057_consen    5 PGEFRCGNGQCIPKSWVCDGIPDCPDGSDE--QNC   37 (37)
T ss_dssp             TTEEEETTSSEEEGGGTTSSSCSSSSSTTT--SSH
T ss_pred             CCeeEcCCCCEEChHHcCCCCCCCCCCccc--ccC
Confidence            799999999999999999999999999999  664

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.01  E-value=2e-10  Score=70.94  Aligned_cols=33  Identities=36%  Similarity=0.945  Sum_probs=30.9

Q ss_pred             CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      .++|+|.+|.||+..++|||+.||.|||||  .+|
T Consensus         3 ~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE--~~C   35 (35)
T cd00112           3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDE--ENC   35 (35)
T ss_pred             CCeEEcCCCCeeCHHHcCCCccCCCCCccc--ccC
Confidence            589999999999999999999999999999  555

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.82  E-value=3.7e-09  Score=87.53  Aligned_cols=67  Identities=33%  Similarity=0.516  Sum_probs=58.4

Q ss_pred             CCCceecC--Cce-ecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCC----ceecCCcccCCCCC---CCCCCCC
Q psy17376         81 LPNEFRCS--NSC-IDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSND----FCIPLDKVCNFIDD---CGDNSDE  149 (227)
Q Consensus        81 ~~~~f~C~--~~C-i~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~D---C~DgsDE  149 (227)
                      ..+.|+|.  .+- |+.+++.|++-||.|||||.+-.  .|+.+.|+|.+.    .-|+.++|-||+-|   |-|||||
T Consensus        34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTs--AC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE  110 (176)
T PF12999_consen   34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTS--ACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE  110 (176)
T ss_pred             CCCceEecCCCCceecHHHccCcceeCCCCCCccccc--cCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence            45679998  344 99999999999999999998643  687889999764    48999999999999   9999999

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.79  E-value=4.2e-09  Score=64.12  Aligned_cols=30  Identities=37%  Similarity=0.932  Sum_probs=28.5

Q ss_pred             CCceecCCCceEeCCCccCCCCCCCCCCCC
Q psy17376         31 RPIFQCNQTQCILETSLCNGIPECGNGRDE   60 (227)
Q Consensus        31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE   60 (227)
                      ..+|+|.++.||+..++|||+.||.|+|||
T Consensus         4 ~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        4 PGEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            459999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.73  E-value=1.2e-08  Score=84.49  Aligned_cols=66  Identities=26%  Similarity=0.444  Sum_probs=57.4

Q ss_pred             CCceecCCC-ce-EeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC--C---ceecCCCccCCccc
Q psy17376         31 RPIFQCNQT-QC-ILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS--N---SCIDHLKRCDRTQD  103 (227)
Q Consensus        31 ~~~F~C~~g-~C-I~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~--~---~Ci~~~~~CDG~~D  103 (227)
                      .+.|.|.+| .= |++.++.|++=||+|||||  -+            ...|..+.|.|.  |   .-|+.++|-||+-|
T Consensus        35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDE--PG------------TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICD  100 (176)
T PF12999_consen   35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDE--PG------------TSACSNGKFYCENKGHIPRYIPSSRVNDGICD  100 (176)
T ss_pred             CCceEecCCCCceecHHHccCcceeCCCCCCc--cc------------cccCcCceEeeccCCCCCceeehhhhcCCcCc
Confidence            467999986 45 9999999999999999999  22            335888899997  3   78999999999999


Q ss_pred             ---CCCCCcc
Q psy17376        104 ---CELGEDE  110 (227)
Q Consensus       104 ---C~dgsDE  110 (227)
                         |=|||||
T Consensus       101 y~~CCDGSDE  110 (176)
T PF12999_consen  101 YDICCDGSDE  110 (176)
T ss_pred             ccccCCCCCC
Confidence               9999999

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.73  E-value=9.6e-09  Score=62.50  Aligned_cols=32  Identities=53%  Similarity=1.180  Sum_probs=24.9

Q ss_pred             cCCCceecCCCceecCCcccCCCCCCCCCCCC
Q psy17376        118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDE  149 (227)
Q Consensus       118 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE  149 (227)
                      |+..+|+|.++.||+..++|||+.||.|+|||
T Consensus         2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            44457888877888888888888888888887

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1215|consensus

Probab=98.48  E-value=1.6e-07  Score=94.96  Aligned_cols=97  Identities=33%  Similarity=0.644  Sum_probs=83.5

Q ss_pred             CceecCC-CceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-CceecCCCccCCcccCCCCCc
Q psy17376         32 PIFQCNQ-TQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGED  109 (227)
Q Consensus        32 ~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsD  109 (227)
                      ..|+|.. +.||...++|||..||.+++||...++.          -..|...++.|. +.|++..++|||..||.+|+|
T Consensus       221 ~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~----------~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~d  290 (877)
T KOG1215|consen  221 EVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCS----------DATCEAPEIECADGDCSDRQKLCDGDLDCPDGLD  290 (877)
T ss_pred             eEEEecCCCcEEeehhccCCCcccccCCcCceeEee----------ccccCCcceeecCCCCccceEEecCccCCCCccc
Confidence            6688887 4899999999999999999999434554          345777899999 999999999999999999999


Q ss_pred             ccCCCCCCcCCCceecCCCceecCCcccCC
Q psy17376        110 EIDCKTYMCPVSHYKCSNDFCIPLDKVCNF  139 (227)
Q Consensus       110 E~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg  139 (227)
                      |.+|....+....|.|.+++ |+...+|++
T Consensus       291 e~~~~~~~~~~~~~d~~~~~-i~~~~~~~~  319 (877)
T KOG1215|consen  291 EDYCKKKLYWSMNVDGSGRR-ILLSKLCHG  319 (877)
T ss_pred             ccccccceeeeeecccCCce-eeecccCcc
Confidence            99998655556788999999 999998876

>KOG2397|consensus

Probab=97.37  E-value=0.00016  Score=67.99  Aligned_cols=68  Identities=26%  Similarity=0.433  Sum_probs=59.2

Q ss_pred             CCceecCCC-ceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-----CceecCCCccCCcccC
Q psy17376         31 RPIFQCNQT-QCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-----NSCIDHLKRCDRTQDC  104 (227)
Q Consensus        31 ~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-----~~Ci~~~~~CDG~~DC  104 (227)
                      ...|.|.+| .=|++..+=|..-||.||||| +             ....|+.++|.|.     ..-|+.+.+-||+.||
T Consensus        42 s~~~~CLdgs~~i~f~qlNDd~CDC~DGsDE-P-------------GtsACpngkF~C~N~G~~p~~i~ssrV~DGICDC  107 (480)
T KOG2397|consen   42 SSMFKCLDGSKTISFSQLNDDSCDCLDGSDE-P-------------GTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDC  107 (480)
T ss_pred             ccceeeccCCcccCHHHhccccccCCCCCCC-C-------------ccccCCCCceeeeecCCCceeeechhccCccccc
Confidence            458999997 689999999999999999999 1             2346999999996     4689999999999999


Q ss_pred             CCCCcccC
Q psy17376        105 ELGEDEID  112 (227)
Q Consensus       105 ~dgsDE~~  112 (227)
                      -|||||..
T Consensus       108 CDgSDE~~  115 (480)
T KOG2397|consen  108 CDGSDEYL  115 (480)
T ss_pred             ccCCCCcc
Confidence            99999964

>KOG2397|consensus

Probab=97.22  E-value=0.00028  Score=66.38  Aligned_cols=67  Identities=34%  Similarity=0.557  Sum_probs=57.9

Q ss_pred             CceecC--CceecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCC----ceecCCcccCCCCCCCCCCCCCC
Q psy17376         83 NEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSND----FCIPLDKVCNFIDDCGDNSDEME  151 (227)
Q Consensus        83 ~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~  151 (227)
                      ..|+|.  ..-|+..++-|++-||.||+||..-  ..|+.+.|+|.+.    .=|+.+.|-||+-||.|||||..
T Consensus        43 ~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGt--sACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~  115 (480)
T KOG2397|consen   43 SMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGT--SACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL  115 (480)
T ss_pred             cceeeccCCcccCHHHhccccccCCCCCCCCcc--ccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence            478998  6789999999999999999999653  3788899999552    37899999999999999999974

>KOG3509|consensus

Probab=95.80  E-value=0.0084  Score=61.18  Aligned_cols=103  Identities=27%  Similarity=0.625  Sum_probs=86.9

Q ss_pred             ceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-CceecCCCccCCcccCCCCCcccCCCC---
Q psy17376         40 QCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEIDCKT---  115 (227)
Q Consensus        40 ~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~~---  115 (227)
                      +|......|++.+|+.+.+|+  .+..        .....+.+.+|+|. +++....+.||....+..++++.+|..   
T Consensus         2 ~c~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (964)
T KOG3509|consen    2 ECVKNRYACDRQPDCRDRSDV--ANDP--------AIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPS   71 (964)
T ss_pred             chhhhhhhhccchhhHhhccc--CCCc--------cccccCCcchhccCCccccCchhhhccccccCCCCCcCCcccccc
Confidence            567778899999999999999  6664        22456788899998 999999999999999999998888863   


Q ss_pred             -CCcCCCceecCCC-ceecCCcccCCCCCCCCCCCCCCC
Q psy17376        116 -YMCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       116 -~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                       ..|.+..+.|.+- ++.+.+..|+|..+|.++++|..+
T Consensus        72 ~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~~  110 (964)
T KOG3509|consen   72 ASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEVGC  110 (964)
T ss_pred             ccccCCcccccccchhcCCccccccCCCCCCccchhccc
Confidence             3566778889776 688899999999999999999865

>KOG3509|consensus

Probab=93.05  E-value=0.09  Score=53.93  Aligned_cols=104  Identities=25%  Similarity=0.530  Sum_probs=83.8

Q ss_pred             eeccCCceeecCCCCCCCcCCCccCC---CCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q psy17376          3 LLRKHEVYHKVLDVPRTQARQKVSCN---SSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLG   79 (227)
Q Consensus         3 cl~~~~~cdg~~dc~~~~d~~~~~C~---~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~   79 (227)
                      |..+..+|++..++.+.++..+..+.   ..+++|.|.++++.-..+.||...++..++++  .+|.      .-.....
T Consensus         3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~s~   74 (964)
T KOG3509|consen    3 CVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTP--SGCN------AKPSASD   74 (964)
T ss_pred             hhhhhhhhccchhhHhhcccCCCccccccCCcchhccCCccccCchhhhccccccCCCCCc--CCcc------ccccccc
Confidence            44556688899999888887666654   24788999999999999999999999999977  7775      1122345


Q ss_pred             CCCCceecC--CceecCCCccCCcccCCCCCcccCCC
Q psy17376         80 CLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCK  114 (227)
Q Consensus        80 C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~  114 (227)
                      |.+..+.|.  .++.+.+..|+|..+|.++++|..+.
T Consensus        75 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (964)
T KOG3509|consen   75 CKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEVGCK  111 (964)
T ss_pred             cCCcccccccchhcCCccccccCCCCCCccchhcccc
Confidence            777888998  58999999999999999999997653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		5e-12
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		9e-12
2fyj_A	82	Nmr Solution Structure Of Calcium-Loaded Lrp Double		2e-05
2fcw_B	80	Structure Of A Complex Between The Pair Of The Ldl		9e-05
1f5y_A	85	Nmr Structure Of A Concatemer Of The First And Seco		1e-04
2lgp_A	94	Solution Structure Of La45 From Ldlr Length = 94		3e-04
2xrc_A	565	Human Complement Factor I Length = 565		5e-04

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 31  RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-- 88
           R  FQC   +CI    +C+G  EC +G DES   C            + C   +F C   
Sbjct: 26  RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGR 75
Query: 89  -NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNS 147
            N CI    RCD   DC+ G DE  C    C    ++C +  CI    VC+   DC D S
Sbjct: 76  VNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 135
Query: 148 DEMECSLFT 156
           DE  C + T
Sbjct: 136 DEASCPVLT 144

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 31  RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-- 88
           R  FQC   +CI    +C+G  EC +G DES   C            + C   +F C   
Sbjct: 8   RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGR 57
Query: 89  -NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNS 147
            N CI    RCD   DC+ G DE  C    C    ++C +  CI    VC+   DC D S
Sbjct: 58  VNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 117
Query: 148 DEMECSLFT 156
           DE  C + T
Sbjct: 118 DEASCPVLT 126

>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module Length = 82

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 80  CLPNEFRC-SNSCIDHLKRCDRTQDCELGEDE-IDCKTYMC-PVSHYKCSNDFCIPLDKV 136
           C PN+F C S  CI     CD   DC    DE   C    C P++ + C+N  CI ++  
Sbjct: 5   CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWR 64
Query: 137 CNFIDDCGDNSDEMECS 153
           C+  +DCGDNSDE  CS
Sbjct: 65  CDNDNDCGDNSDEAGCS 81

>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 80  CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCN 138
           C   EFRC +  CI     CD  +DC  G DE  C    C  + ++C++  CIP    C+
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACD 62
Query: 139 FIDDCGDNSDEM 150
              DC D SDE 
Sbjct: 63  NDPDCEDGSDEW 74

>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 31  RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-- 88
           R  FQC   +CI    +C+G  EC +G DES   C            + C   +F C   
Sbjct: 10  RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGR 59
Query: 89  -NSCIDHLKRCDRTQDCELGEDEIDC 113
            N CI    RCD   DC+ G DE  C
Sbjct: 60  VNRCIPQFWRCDGQVDCDNGSDEQGC 85

>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr Length = 94

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-SNSCI 92
           FQCN + CI +   C+  P+C +G DE    C    +     +P  C   EF C S  CI
Sbjct: 12  FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP--CSAFEFHCLSGECI 69
Query: 93  DHLKRCDRTQDCELGEDEIDCKT 115
               RCD   DC+   DE +C  
Sbjct: 70  HSSWRCDGGPDCKDKSDEENCAV 92

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 85  FRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDC 143
           F+C N   I  +K CD   DC    DE+ CK   C    + C +  CIP    CN   DC
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCCKA--CQGKGFHCKSGVCIPSQYQCNGEVDC 266
Query: 144 GDNSDEMECSLFTFLS 159
               DE+ C+ F  ++
Sbjct: 267 ITGEDEVGCAGFASVA 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-23
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-22
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-18
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-17
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-17
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-07
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-22
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	9e-22
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	4e-18
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	4e-16
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	5e-14
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	6e-11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-06
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	5e-21
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	2e-12
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	3e-08
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	8e-04
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	2e-20
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	6e-13
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-14
2xrc_A	565	Human complement factor I; immune system, hydrolas	4e-10
2xrc_A	565	Human complement factor I; immune system, hydrolas	4e-06
3a7q_B	44	Low-density lipoprotein receptor-related protein;	1e-08
3a7q_B	44	Low-density lipoprotein receptor-related protein;	6e-06
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	3e-08
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	4e-05
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	4e-08
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	1e-07
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	5e-08
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	3e-05
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	4e-04
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	9e-08
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	2e-06
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	5e-07
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	3e-05
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	1e-06
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	2e-06
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-06
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	3e-05
1cr8_A	42	Protein (LOW density lipoprotein receptor related	2e-06
1cr8_A	42	Protein (LOW density lipoprotein receptor related	8e-06
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	5e-06
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	1e-05
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	3e-05
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	3e-04
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	3e-05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	4e-05
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	3e-05
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	8e-05
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	7e-05
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 96.1 bits (238), Expect = 4e-23
 Identities = 42/126 (33%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS--- 90
           FQC   +CI    +C+G  EC +G DES   C            + C   +F C      
Sbjct: 29  FQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGRVNR 78

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI    RCD   DC+ G DE  C    C    ++C +  CI    VC+   DC D SDE 
Sbjct: 79  CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA 138

Query: 151 ECSLFT 156
            C + T
Sbjct: 139 SCPVLT 144

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 93.4 bits (231), Expect = 4e-22
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
           FQCN + CI +   C+  P+C +G DE         +     +   C   EF C +  CI
Sbjct: 150 FQCNSSTCIPQLWACDNDPDCEDGSDEWP--QRCRGLYVFQGDSSPCSAFEFHCLSGECI 207

Query: 93  DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
               RCD   DC+   DE +C    C    ++CS+  CI   + C+   DC D SDE+ C
Sbjct: 208 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 83.3 bits (205), Expect = 1e-18
 Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 15/122 (12%)

Query: 34  FQCN--QTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS- 90
           F C     +CI +   C+G  +C NG DE                P  C  +EFRC +  
Sbjct: 70  FSCGGRVNRCIPQFWRCDGQVDCDNGSDE------------QGCPPKTCSQDEFRCHDGK 117

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI     CD  +DC  G DE  C    C  + ++C++  CIP    C+   DC D SDE 
Sbjct: 118 CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 177

Query: 151 EC 152
             
Sbjct: 178 PQ 179

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 80.3 bits (197), Expect = 1e-17
 Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 15/122 (12%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-SCI 92
           F C   +CI  +  C+G P+C +  DE    C              C P+EF+CS+ +CI
Sbjct: 199 FHCLSGECIHSSWRCDGGPDCKDKSDE--ENCA----------VATCRPDEFQCSDGNCI 246

Query: 93  DHLKRCDRTQDCELGEDEIDCK--TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
              ++CDR  DC+   DE+ C   T     + +KC +  CI LDKVCN   DC D SDE 
Sbjct: 247 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 306

Query: 151 EC 152
             
Sbjct: 307 IK 308

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 79.9 bits (196), Expect = 2e-17
 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 23/134 (17%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
           F+C+  +CI    +C+   +C +G DE+                  C P  F+C++S CI
Sbjct: 111 FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT------------CGPASFQCNSSTCI 158

Query: 93  DHLKRCDRTQDCELGEDEIDC----------KTYMCPVSHYKCSNDFCIPLDKVCNFIDD 142
             L  CD   DCE G DE              +  C    + C +  CI     C+   D
Sbjct: 159 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD 218

Query: 143 CGDNSDEMECSLFT 156
           C D SDE  C++ T
Sbjct: 219 CKDKSDEENCAVAT 232

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 61.4 bits (148), Expect = 3e-11
 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 28/137 (20%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
           FQC+   CI  +  C+   +C +  DE   +             L   PN+F+C +  CI
Sbjct: 238 FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNV----------TLCEGPNKFKCHSGECI 287

Query: 93  DHLKRCDRTQDCELGEDE--IDCKTYMCPVSHYKCS---------------NDFCIPLDK 135
              K C+  +DC    DE   +C T  C  ++  CS               + F +   +
Sbjct: 288 TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 347

Query: 136 VCNFIDDCGDNSDEMEC 152
            C  ID+C D     + 
Sbjct: 348 RCEDIDECQDPDTCSQL 364

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDL------LPNPLGCLPNEFRC 87
           F+C+  +CI    +CN   +C +  DE +  CG     D       + N L         
Sbjct: 279 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCP 338

Query: 88  SNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLD 134
               +   +RC+   +C+  +        +      +C   F +   
Sbjct: 339 DGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH 385

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 97  RCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           +   T    L           C  + ++C +  CI    VC+   +C D SDE + +
Sbjct: 4   KLRWTVALLLAAAGTAVGD-RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 59

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 93.7 bits (232), Expect = 2e-22
 Identities = 42/123 (34%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNS 90
           FQC   +CI    +C+G  EC +G DES   C            + C   +F C    N 
Sbjct: 11  FQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGRVNR 60

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI    RCD   DC+ G DE  C    C    ++C +  CI    VC+   DC D SDE 
Sbjct: 61  CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA 120

Query: 151 ECS 153
            C 
Sbjct: 121 SCP 123

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 92.2 bits (228), Expect = 9e-22
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-SCI 92
           FQCN + CI +   C+  P+C +G DE         +     +   C   EF C +  CI
Sbjct: 132 FQCNSSTCIPQLWACDNDPDCEDGSDEWP--QRCRGLYVFQGDSSPCSAFEFHCLSGECI 189

Query: 93  DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
               RCD   DC+   DE +C    C    ++CS+  CI   + C+   DC D SDE+ C
Sbjct: 190 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 81.8 bits (201), Expect = 4e-18
 Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 34  FQC--NQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-S 90
           F C     +CI +   C+G  +C NG DE    C              C  +EFRC +  
Sbjct: 52  FSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ--GCPPKT----------CSQDEFRCHDGK 99

Query: 91  CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
           CI     CD  +DC  G DE  C    C  + ++C++  CIP    C+   DC D SDE 
Sbjct: 100 CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 159

Query: 151 ECS 153
              
Sbjct: 160 PQR 162

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 79.5 bits (195), Expect = 2e-17
 Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 15/122 (12%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
           F C   +CI  +  C+G P+C +  DE                   C P+EF+CS+  CI
Sbjct: 181 FHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT------------CRPDEFQCSDGNCI 228

Query: 93  DHLKRCDRTQDCELGEDEIDCK--TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
              ++CDR  DC+   DE+ C   T     + +KC +  CI LDKVCN   DC D SDE 
Sbjct: 229 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 288

Query: 151 EC 152
             
Sbjct: 289 IK 290

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 76.0 bits (186), Expect = 4e-16
 Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 23/131 (17%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
           F+C+  +CI    +C+   +C +G DE+                L C P  F+C++S CI
Sbjct: 93  FRCHDGKCISRQFVCDSDRDCLDGSDEA------------SCPVLTCGPASFQCNSSTCI 140

Query: 93  DHLKRCDRTQDCELGEDEIDCK----------TYMCPVSHYKCSNDFCIPLDKVCNFIDD 142
             L  CD   DCE G DE   +          +  C    + C +  CI     C+   D
Sbjct: 141 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD 200

Query: 143 CGDNSDEMECS 153
           C D SDE  C+
Sbjct: 201 CKDKSDEENCA 211

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 69.8 bits (170), Expect = 5e-14
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEID--CKTYMCPVSHYKCSNDF--CIPLD 134
           C  NEF+C +  CI +   CD + +C+ G DE    C +  C    + C      CIP  
Sbjct: 6   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 65

Query: 135 KVCNFIDDCGDNSDEMECS 153
             C+   DC + SDE  C 
Sbjct: 66  WRCDGQVDCDNGSDEQGCP 84

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 60.6 bits (146), Expect = 6e-11
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 28/146 (19%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
           FQC+   CI  +  C+   +C +  DE   +             L   PN+F+C +  CI
Sbjct: 220 FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNV----------TLCEGPNKFKCHSGECI 269

Query: 93  DHLKRCDRTQDCELGEDE-------IDCKTYMCPVSH----------YKCSNDFCIPLDK 135
              K C+  +DC    DE        +C       SH            C + F +   +
Sbjct: 270 TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 329

Query: 136 VCNFIDDCGDNSDEMECSLFTFLSFR 161
            C  ID+C D     +  +     ++
Sbjct: 330 RCEDIDECQDPDTCSQLCVNLEGGYK 355

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 6/125 (4%)

Query: 25  VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPN-----PLG 79
           V+       F+C+  +CI    +CN   +C +  DE +  CG     D            
Sbjct: 252 VTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDL 311

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCN 138
            +  E  C +   +   +RC+   +C+  +        +      +C   F +       
Sbjct: 312 KIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 371

Query: 139 FIDDC 143
                
Sbjct: 372 KAVGS 376

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 82.7 bits (205), Expect = 5e-21
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCN 138
           C   EFRC +  CI     CD  +DC  G DE  C    C  + ++C++  CIP    C+
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACD 62

Query: 139 FIDDCGDNSDEMECS 153
              DC D SDE    
Sbjct: 63  NDPDCEDGSDEWPQR 77

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-SCI 92
           F+C+  +CI    +C+   +C +G DE+   C              C P  F+C++ +CI
Sbjct: 8   FRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLT----------CGPASFQCNSSTCI 55

Query: 93  DHLKRCDRTQDCELGEDEIDCK 114
             L  CD   DCE G DE   +
Sbjct: 56  PQLWACDNDPDCEDGSDEWPQR 77

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 48.4 bits (116), Expect = 3e-08
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFT 156
           C  + ++C +  CI    VC+   DC D SDE  C + T
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT 41

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
          FQCN + CI +   C+  P+C +G DE    C
Sbjct: 47 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 78

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 80.8 bits (200), Expect = 2e-20
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCKTYM--CPVSHYKCSNDFCIPLDKV 136
           C PN+F C++  CI     CD   DC    DE     Y    P++ + C+N  CI ++  
Sbjct: 5   CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWR 64

Query: 137 CNFIDDCGDNSDEMECS 153
           C+  +DCGDNSDE  CS
Sbjct: 65  CDNDNDCGDNSDEAGCS 81

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 61.1 bits (149), Expect = 6e-13
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
           F C   +CI  +  C+   +CG+  DES +             P      +F C+N  CI
Sbjct: 10  FSCASGRCIPISWTCDLDDDCGDRSDESASCA----------YPTCFPLTQFTCNNGRCI 59

Query: 93  DHLKRCDRTQDCELGEDEIDC 113
           +   RCD   DC    DE  C
Sbjct: 60  NINWRCDNDNDCGDNSDEAGC 80

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 71.5 bits (175), Expect = 1e-14
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 16/124 (12%)

Query: 34  FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-SCI 92
            + +  +C        G  +  +    +                   + + F+C N   I
Sbjct: 171 LETSLAECTFTKRRTMGYQDFADVVCYTQKADS-------------PMDDFFQCVNGKYI 217

Query: 93  DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
             +K CD   DC    DE+ CK   C    + C +  CIP    CN   DC    DE+ C
Sbjct: 218 SQMKACDGINDCGDQSDELCCKA--CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275

Query: 153 SLFT 156
           + F 
Sbjct: 276 AGFA 279

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 7/96 (7%)

Query: 75  PNPLGCLPNEFRCSNS------CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSND 128
            +          C         C    +R    QD                   ++C N 
Sbjct: 156 LSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKAD-SPMDDFFQCVNG 214

Query: 129 FCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNK 164
             I   K C+ I+DCGD SDE+ C       F    
Sbjct: 215 KYISQMKACDGINDCGDQSDELCCKACQGKGFHCKS 250

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 25  VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNE 84
            + +     FQC   + I +   C+GI +CG+  DE                   C    
Sbjct: 200 KADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA--------------CQGKG 245

Query: 85  FRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSH--YKCSNDFCIPLDKVCNFID 141
           F C +  CI    +C+   DC  GEDE+ C  +           + D      ++ + + 
Sbjct: 246 FHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLP 305

Query: 142 --DCG 144
              CG
Sbjct: 306 KLSCG 310

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 113 CKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
                C    ++C N+ CIP    C+  DDC D+SDE +C
Sbjct: 3   GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 41.1 bits (97), Expect = 6e-06
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
           C  ++F+C N  CI  + RCD   DC    DE DC
Sbjct: 8   CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           C  + +KC++  CIP    C+  +DCGD SDE   +
Sbjct: 5   CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C   +F+C++  CI     CD   DC    DE   
Sbjct: 5   CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 13/121 (10%)

Query: 35  QCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNSC 91
             +  + +L+  L              V    + +          C  +E +C      C
Sbjct: 20  SISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPS----------CDEHEHQCGGDDPQC 69

Query: 92  IDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME 151
           I  L  CD   DC  GEDE DC         +     F     +    +    ++S    
Sbjct: 70  ISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAA 129

Query: 152 C 152
            
Sbjct: 130 F 130

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 72  DLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEID-CKTYMCPVSHYKCSND-- 128
           D L      +        S +D      R +        ++  +   C    ++C  D  
Sbjct: 8   DKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDP 67

Query: 129 FCIPLDKVCNFIDDCGDNSDEMECS 153
            CI    VC+  +DC +  DE +C+
Sbjct: 68  QCISKLFVCDGHNDCRNGEDEKDCT 92

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 46.9 bits (112), Expect = 5e-08
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C    + C+N  CI     C+  +DC DNSDE   
Sbjct: 6   CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 77  PLGCLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           P  C P EF C+N  CI    +CD   DC    DE   
Sbjct: 3   PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEY 68
          F C  ++CI E   C+G  +C +  DE+ A+C ++
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAPALCHQH 45

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 46.0 bits (110), Expect = 9e-08
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           C    + C +  CI     C+   DC D SDE  C+
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C   EF C +  CI    RCD   DC+   DE +C
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 44.3 bits (105), Expect = 5e-07
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 113 CKTYMCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMEC 152
            +   C + ++ C N   C+P    CN +DDCG+ +DE  C
Sbjct: 2   SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 80  CLPNEFRCSNS--CIDHLKRCDRTQDCELGEDEIDC 113
           C    F C N   C+  L  C+   DC    DE +C
Sbjct: 7   CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 113 CKTYMCPVSHYKCSN-DFCIPLDKVCNFIDDCGDNSDEMECS 153
                C  + +KC++   CI     C+ + DC DNSDE  C 
Sbjct: 2   AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 77  PLGCLPNEFRCSN--SCIDHLKRCDRTQDCELGEDEIDCKT 115
            L C   +F+C++  SCI+   RCD   DC    DE  C T
Sbjct: 4   VLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 113 CKTYMCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMECS 153
            +   C  S + C     C+P   +C+   DC D +DE   +
Sbjct: 2   SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 80  CLPNEFRCSNS--CIDHLKRCDRTQDCELGEDEIDC 113
           C P+ F C  +  C+     CD  +DC  G DE   
Sbjct: 7   CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 77  PLGCLPNEFRC--SNSCIDHLKRCDRTQDCELGEDEIDC 113
           P GC  +EF+C     CI    RCD   DC    DE  C
Sbjct: 1   PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 117 MCPVSHYKC-SNDFCIPLDKVCNFIDDCGDNSDEMEC 152
            C    ++C  +  CIPL   C+   DC D+SDE  C
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 42.5 bits (100), Expect = 5e-06
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 80  CLPNEFRCSNS--CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSN 127
           C P+ F C  +  C+     CD  +DC  G DE       C  +     +
Sbjct: 9   CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG--CLYNSTGSGS 56

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 112 DCKTYMCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMECS 153
             +   C  S + C     C+P   +C+   DC D +DE   +
Sbjct: 3   KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 45

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 89  NSCIDHLKRCDRTQDCELGEDEID----CKTYMCPVSHYKCSNDF--CIPLDKVCNFIDD 142
           +   +   +     D +            + + C     +C  D   CI     C+   D
Sbjct: 21  HDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKD 80

Query: 143 CGDNSDEMECS 153
           C D SDE   +
Sbjct: 81  CRDGSDEDPET 91

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 21/121 (17%)

Query: 35  QCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS---C 91
           + +  +        +   +        ++   E++          C  +E  C      C
Sbjct: 19  KLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHH----------CDEHESECRGDVPEC 68

Query: 92  IDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME 151
           I  L  CD  +DC  G DE       C ++     + +             C D + +  
Sbjct: 69  IHDLLFCDGEKDCRDGSDEDPE---TCSLNITHVGSSYTG-----LATWTSCEDLNPDHA 120

Query: 152 C 152
            
Sbjct: 121 I 121

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 118 CPVSHYKCSND--FCIPLDKVCNFIDDCGDNSDEMECS 153
           C +    C      CIP+   C+  +DC    DE  C 
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRC---SNSCIDHLKRCDRTQDCELGEDEIDC 113
           C  +E  C   S  CI    RCD   DC+ GEDE +C
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 77  PLGCLPNEFRCSNS------CIDHLKRCDRTQDCELGEDEIDCKT 115
              C P +FRCS        C      CD   DC+ G DE  C T
Sbjct: 2   SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 118 CPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMEC 152
           CP   ++CS     +  C P D +C+   DC D  DE  C
Sbjct: 5   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 38.2 bits (89), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 118 CPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMEC 152
           CP   ++CS     +  C P D +C+   DC D  DE  C
Sbjct: 7   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 80  CLPNEFRCSNS------CIDHLKRCDRTQDCELGEDEIDC 113
           C P +FRCS        C      CD   DC+ G DE  C
Sbjct: 7   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 46/237 (19%), Positives = 64/237 (27%), Gaps = 85/237 (35%)

Query: 13  VLDVPRTQARQKVSCNSSRPIF-----QCNQTQCILE--TSLCNGI-PECGNGRDESVAM 64
            LDV  +    KV C     IF      CN  + +LE    L   I P   +  D S  +
Sbjct: 167 ALDVCLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 65  CGEYN-----IRDLL-----PNPLGCLPN----------EFRC-------SNSCIDHL-- 95
               +     +R LL      N L  L N             C            D L  
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 96  -KRCDRTQDCE---LGEDE--------IDCKTYMCPVSHYKCSNDFCIPL---------- 133
                 + D     L  DE        +DC+    P      +     P           
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----PRRLSIIAESIR 338

Query: 134 --------------DKVCNFIDDCGDN--SDEMECSLFTFLS-FRLNKKIPRKSISM 173
                         DK+   I+   +     E    +F  LS F  +  IP   +S+
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.97
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.96
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.87
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.84
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.84
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.83
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.55
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.4
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.37
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.16
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.15
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.12
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.11
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.09
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.08
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.07
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.07
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.06
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.05
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.04
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.03
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.03
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.01
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.01
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.0
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.99
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.98
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.98
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.98
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.93
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.93
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.93
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.92
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.88
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.86
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.83
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.63
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.6
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.43
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.32
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.08
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.98
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	97.9
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.71
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.29
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	96.71

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=8.8e-35  Score=283.19  Aligned_cols=193  Identities=24%  Similarity=0.426  Sum_probs=134.1

Q ss_pred             eeeccCCceeecCCCCCCCcCCCccCC---CCCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q psy17376          2 LLLRKHEVYHKVLDVPRTQARQKVSCN---SSRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPN   76 (227)
Q Consensus         2 ~cl~~~~~cdg~~dc~~~~d~~~~~C~---~~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~   76 (227)
                      .||+...+|||+.||.+++||....|.   +...+|+|.+  ++|||..|+|||..||.|||||  .+|.          
T Consensus        17 ~ci~~~~~Cdg~~dC~d~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE--~~C~----------   84 (699)
T 1n7d_A           17 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGCP----------   84 (699)
T ss_dssp             ---------------------------CCSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTT--TSCS----------
T ss_pred             cEEcHHhcCCCcccCCCCCCCCccccCCcCCCCCccCCCCCCCceeCcceecCCcccCCCCccc--Cccc----------
Confidence            489999999999999999999875552   3479999997  4899999999999999999999  8997          


Q ss_pred             CCCCCCCceecC-CceecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCCceecCCcccCCCCCCCCCCCC--CCCC
Q psy17376         77 PLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDE--MECS  153 (227)
Q Consensus        77 ~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE--~~C~  153 (227)
                      ...|.+.+|+|. ++||+..|+|||+.||.|||||.+|....|++.+|+|.+|+||+..|+|||+.||.|||||  .+|.
T Consensus        85 ~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~  164 (699)
T 1n7d_A           85 PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR  164 (699)
T ss_dssp             SCCCCSSCCCSSCC----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSS
T ss_pred             ccccccCcEEcCCCCEecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCCcccchhcccCCCCcCCCCcccccccCC
Confidence            457999999999 9999999999999999999999999888899999999999999999999999999999999  8995


Q ss_pred             C--------CCc--CceecCCC--CCCCeeeccccCCcchhhccCCCCCCccccCCCccccCCCCCCCCCCCCccCCCCC
Q psy17376        154 L--------FTF--LSFRLNKK--IPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHK  221 (227)
Q Consensus       154 ~--------~~C--~~f~C~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~w~c~~~~De~~~~~~~~~cp~~~f~cp~~  221 (227)
                      .        ..|  .+|+|.++  |+..|+|++                 ...|.+++||.+-.  ...|+.+.|.|.+|
T Consensus       165 ~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg-----------------~~dC~dgsDE~~C~--~~~C~~~~f~C~~g  225 (699)
T 1n7d_A          165 GLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDG-----------------GPDCKDKSDEENCA--VATCRPDEFQCSDG  225 (699)
T ss_dssp             CCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSS-----------------SCCSTTSCSSCSCC--CCCCCSSEEESSSS
T ss_pred             CcccccCCCCCCCCcceecCCCceEechhccCC-----------------CCCCCCCcccccCC--CcccCCCcEecCCC
Confidence            3        368  78999875  444444433                 22356777777621  24677777777777


Q ss_pred             CCCC
Q psy17376        222 SPVP  225 (227)
Q Consensus       222 ~~~~  225 (227)
                      .+||
T Consensus       226 ~Ci~  229 (699)
T 1n7d_A          226 NCIH  229 (699)
T ss_dssp             CEEE
T ss_pred             ceee
Confidence            7766

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=7.1e-34  Score=276.82  Aligned_cols=192  Identities=26%  Similarity=0.466  Sum_probs=159.9

Q ss_pred             eeeccCCceeecCCCCCCCcCCCcc---CCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCC
Q psy17376          2 LLLRKHEVYHKVLDVPRTQARQKVS---CNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPL   78 (227)
Q Consensus         2 ~cl~~~~~cdg~~dc~~~~d~~~~~---C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~   78 (227)
                      .||+...+|||..||.+++||....   |.  ..+|+|.+|+||+..|+|||..||.|||||  .+|.          ..
T Consensus        60 ~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~--~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE--~~C~----------~~  125 (699)
T 1n7d_A           60 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCS--QDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCP----------VL  125 (699)
T ss_dssp             CCCCSSSTTSSSCCC-CCCTTTSCSSCCCC--SSCCCSSCC----CCCTTCSSCCSSSSCSS--SSCC----------CC
T ss_pred             ceeCcceecCCcccCCCCcccCcccccccc--cCcEEcCCCCEecHHHcCCCcCcCCCCCcc--CCcC----------cc
Confidence            4899999999999999999997543   54  799999999999999999999999999999  8997          55


Q ss_pred             CCCCCceecC-CceecCCCccCCcccCCCCCcc--cCCCC--------CCcCCCceecCCCceecCCcccCCCCCCCCCC
Q psy17376         79 GCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDE--IDCKT--------YMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNS  147 (227)
Q Consensus        79 ~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE--~~C~~--------~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~Dgs  147 (227)
                      .|.+.+|+|. ++||+..|+|||+.||.|||||  .+|..        ..|...+|+|.+|+||+.+++|||+.||.|||
T Consensus       126 ~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgs  205 (699)
T 1n7d_A          126 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKS  205 (699)
T ss_dssp             CCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSC
T ss_pred             ccCccccCCCCCcccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCCceEechhccCCCCCCCCCc
Confidence            7999999999 9999999999999999999999  89963        37999999999999999999999999999999


Q ss_pred             CCCCCCCCCc--CceecCCC--CCCCeeeccccCCcchhhccCCCCCCccccCCCccccC-CCCCCCCC-CCCccCCCCC
Q psy17376        148 DEMECSLFTF--LSFRLNKK--IPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALK-PSRNFTKH-PRALFPLPHK  221 (227)
Q Consensus       148 DE~~C~~~~C--~~f~C~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~w~c~~~~De~~-~~~~~~~c-p~~~f~cp~~  221 (227)
                      ||.+|....|  .+|+|.++  |+..++|                 ++...|.+++||.+ ..  ...| +...|.|.+|
T Consensus       206 DE~~C~~~~C~~~~f~C~~g~Ci~~~~~C-----------------dg~~dC~dgsde~~C~~--~~~C~~~~~~~C~~g  266 (699)
T 1n7d_A          206 DEENCAVATCRPDEFQCSDGNCIHGSRQC-----------------DREYDCKDMSDEVGCVN--VTLCEGPNKFKCHSG  266 (699)
T ss_dssp             SSCSCCCCCCCSSEEESSSSCEEETTCCS-----------------SSCCCSSSSCSSSSTTC--CCCCCSTTCCCCTTS
T ss_pred             ccccCCCcccCCCcEecCCCceeeeeccc-----------------CCCCCCCCCCccCCCCC--CCcccCCCceecCCC
Confidence            9999987789  89999875  2222211                 12334788999987 42  4567 4678999999


Q ss_pred             CCCCC
Q psy17376        222 SPVPC  226 (227)
Q Consensus       222 ~~~~~  226 (227)
                      .+||.
T Consensus       267 ~Ci~~  271 (699)
T 1n7d_A          267 ECITL  271 (699)
T ss_dssp             CCCCS
T ss_pred             cEeCC
Confidence            99874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.97  E-value=3.9e-34  Score=282.43  Aligned_cols=193  Identities=24%  Similarity=0.430  Sum_probs=0.0

Q ss_pred             eeeccCCceeecCCCCCCCcCCCccCC---CCCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q psy17376          2 LLLRKHEVYHKVLDVPRTQARQKVSCN---SSRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPN   76 (227)
Q Consensus         2 ~cl~~~~~cdg~~dc~~~~d~~~~~C~---~~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~   76 (227)
                      .||+...+|||..||.+++||.+..|.   +.+.+|+|.+  ++|||..|+|||..||.|||||  .+|.          
T Consensus        35 ~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE--~~C~----------  102 (791)
T 3m0c_C           35 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGCP----------  102 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCccc--CCcc----------
Confidence            489999999999999999999875442   3479999998  8999999999999999999999  8997          


Q ss_pred             CCCCCCCceecC-CceecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCCceecCCcccCCCCCCCCCCCCC--CCC
Q psy17376         77 PLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM--ECS  153 (227)
Q Consensus        77 ~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~--~C~  153 (227)
                      ...|.+.+|+|. ++||+..|+|||+.||.|||||.+|....|.+.+|+|.+|+||+..|+|||..||.|||||.  +|.
T Consensus       103 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~  182 (791)
T 3m0c_C          103 PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR  182 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccCCeEECCCCCEECHHHcCCCcccCCCCcccccccccccccceeccCCCccccccccCCCCCcCCCCCCcccccCC
Confidence            456999999999 99999999999999999999999998878999999999999999999999999999999997  673


Q ss_pred             --------CCCc--CceecCCC--CCCCeeeccccCCcchhhccCCCCCCccccCCCccccCCCCCCCCCCCCccCCCCC
Q psy17376        154 --------LFTF--LSFRLNKK--IPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHK  221 (227)
Q Consensus       154 --------~~~C--~~f~C~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~w~c~~~~De~~~~~~~~~cp~~~f~cp~~  221 (227)
                              ...|  .+|+|.++  |+..|+|++                 ...|.+++||.+..  ...|+.+.|.|.+|
T Consensus       183 ~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg-----------------~~dC~dgsDE~~C~--~~~C~~~~f~C~~g  243 (791)
T 3m0c_C          183 GLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDG-----------------GPDCKDKSDEENCA--VATCRPDEFQCSDG  243 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccCCCCCCCCCCcccccCCceeccccccCC-----------------CCCCCCCCCCCCcc--ccccCCCcceecCC
Confidence                    2357  78889875  555455433                 23356777776611  13577778888887


Q ss_pred             CCCC
Q psy17376        222 SPVP  225 (227)
Q Consensus       222 ~~~~  225 (227)
                      .+|+
T Consensus       244 ~Ci~  247 (791)
T 3m0c_C          244 NCIH  247 (791)
T ss_dssp             ----
T ss_pred             ceEe
Confidence            7776

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.96  E-value=7.6e-32  Score=266.15  Aligned_cols=192  Identities=26%  Similarity=0.475  Sum_probs=11.6

Q ss_pred             eeeccCCceeecCCCCCCCcCCCc---cCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCC
Q psy17376          2 LLLRKHEVYHKVLDVPRTQARQKV---SCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPL   78 (227)
Q Consensus         2 ~cl~~~~~cdg~~dc~~~~d~~~~---~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~   78 (227)
                      .||+...+|||..||.+++||.+.   .|.  ..+|+|.+|+||+..|+|||..||.|||||  .+|.          ..
T Consensus        78 ~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~--~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE--~~C~----------~~  143 (791)
T 3m0c_C           78 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCS--QDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCP----------VL  143 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEeeccccCCCCcCcCCCcccCCccCcccc--CCeEECCCCCEECHHHcCCCcccCCCCccc--cccc----------cc
Confidence            489999999999999999999754   344  789999999999999999999999999999  8997          45


Q ss_pred             CCCCCceecC-CceecCCCccCCcccCCCCCccc--CCC--------CCCcCCCceecCCCceecCCcccCCCCCCCCCC
Q psy17376         79 GCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEI--DCK--------TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNS  147 (227)
Q Consensus        79 ~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~--~C~--------~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~Dgs  147 (227)
                      .|.+.+|+|. +.||+..|+|||..||.|||||.  +|.        ...|...+|+|.+|.||+..|+|||..||.|+|
T Consensus       144 ~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgs  223 (791)
T 3m0c_C          144 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKS  223 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccceeccCCCccccccccCCCCCcCCCCCCcccccCCCccccCCCCCCCCCCcccccCCceeccccccCCCCCCCCCC
Confidence            6999999999 99999999999999999999997  673        246888999999999999999999999999999


Q ss_pred             CCCCCCCCCc--CceecCCC--CCCCeeeccccCCcchhhccCCCCCCccccCCCccccC-CCCCCCCC-CCCccCCCCC
Q psy17376        148 DEMECSLFTF--LSFRLNKK--IPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALK-PSRNFTKH-PRALFPLPHK  221 (227)
Q Consensus       148 DE~~C~~~~C--~~f~C~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~w~c~~~~De~~-~~~~~~~c-p~~~f~cp~~  221 (227)
                      ||.+|....|  .+|+|.++  |+..++|+                 +.-.|.+++||.+ ..  +..| ..+.|.|.+|
T Consensus       224 DE~~C~~~~C~~~~f~C~~g~Ci~~~~~Cd-----------------g~~dC~dgsDE~~C~~--~~~C~~~~~~~C~~G  284 (791)
T 3m0c_C          224 DEENCAVATCRPDEFQCSDGNCIHGSRQCD-----------------REYDCKDMSDEVGCVN--VTLCEGPNKFKCHSG  284 (791)
T ss_dssp             --------------------------------------------------------------------CCSTTCCCCTTS
T ss_pred             CCCCccccccCCCcceecCCceEecceecC-----------------ChhccccccccCcccc--cccccCCCccccCCC
Confidence            9999987788  89999875  22222221                 2223678888887 32  2344 3567888888


Q ss_pred             CCCCC
Q psy17376        222 SPVPC  226 (227)
Q Consensus       222 ~~~~~  226 (227)
                      .+|+.
T Consensus       285 ~Ci~~  289 (791)
T 3m0c_C          285 ECITL  289 (791)
T ss_dssp             CCCCS
T ss_pred             ccccc
Confidence            88763

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.87  E-value=3e-22  Score=145.80  Aligned_cols=76  Identities=39%  Similarity=0.826  Sum_probs=71.3

Q ss_pred             CCCCCCceecC-CceecCCCccCCcccCCCCCcc-cCCCCCCcCC-CceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376         78 LGCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDE-IDCKTYMCPV-SHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus        78 ~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE-~~C~~~~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      ..|.+.+|+|. ++||+.+|+|||+.||.||||| .+|....|.+ .+|+|.+|+||+..++|||+.||.|||||.+|.
T Consensus         3 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~C~   81 (82)
T 2fyj_A            3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGCS   81 (82)
T ss_dssp             SSSCTTEEETTSSCEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSCCC
T ss_pred             CCCCCCceEeCCCCEEeccccCCCcccCCCccccccccccccCCCCCceECCCCCeEcHHHccCCCCcCCCCccccCCC
Confidence            46889999999 9999999999999999999999 8998778964 899999999999999999999999999999985

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.84  E-value=4.2e-21  Score=139.74  Aligned_cols=77  Identities=35%  Similarity=0.784  Sum_probs=69.0

Q ss_pred             ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCC-CceecC-CceecCCCccCCcc
Q psy17376         25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLP-NEFRCS-NSCIDHLKRCDRTQ  102 (227)
Q Consensus        25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~-~~f~C~-~~Ci~~~~~CDG~~  102 (227)
                      ..|.  .++|+|.+|+|||..|+|||+.||.|||||. .+|.          ...|.+ .+|+|. ++||+..|+|||+.
T Consensus         3 ~~C~--~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~-~~C~----------~~~C~~~~~f~C~~g~CI~~~~~CDG~~   69 (82)
T 2fyj_A            3 RTCP--PNQFSCASGRCIPISWTCDLDDDCGDRSDES-ASCA----------YPTCFPLTQFTCNNGRCININWRCDNDN   69 (82)
T ss_dssp             SSSC--TTEEETTSSCEEETTSSSSCSSSSCSTTTTT-SSCC----------CSSSCSSSEEECTTSCEEETTCBSSSSB
T ss_pred             CCCC--CCceEeCCCCEEeccccCCCcccCCCccccc-cccc----------cccCCCCCceECCCCCeEcHHHccCCCC
Confidence            3565  7999999999999999999999999999994 4786          446865 899999 99999999999999


Q ss_pred             cCCCCCcccCCC
Q psy17376        103 DCELGEDEIDCK  114 (227)
Q Consensus       103 DC~dgsDE~~C~  114 (227)
                      ||.|||||.+|.
T Consensus        70 DC~DgSDE~~C~   81 (82)
T 2fyj_A           70 DCGDNSDEAGCS   81 (82)
T ss_dssp             CCSSSSSCSCCC
T ss_pred             cCCCCccccCCC
Confidence            999999999885

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.84  E-value=3.8e-22  Score=144.65  Aligned_cols=75  Identities=37%  Similarity=0.825  Sum_probs=69.5

Q ss_pred             CCCCCceecC-CceecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCCceecCCcccCCCCCCCCCCCC--CCCC
Q psy17376         79 GCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDE--MECS  153 (227)
Q Consensus        79 ~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE--~~C~  153 (227)
                      .|.+.+|+|. ++||+..|+|||+.||.|||||.+|....|++.+|+|.+|+||+..++|||+.||.|||||  .+|.
T Consensus         2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~~~C~   79 (80)
T 2fcw_B            2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR   79 (80)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGGC-
T ss_pred             CCCCCccCCCCCCEEeeecccCCcccCCCcccccccccccCCceeeECCCCCEEecccccCCCcCCCCCCCcCcccCC
Confidence            4788999999 9999999999999999999999999766788999999999999999999999999999999  6664

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.83  E-value=1.8e-21  Score=141.13  Aligned_cols=72  Identities=39%  Similarity=0.905  Sum_probs=66.4

Q ss_pred             CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-CceecCCCccCCcccCCCCCc
Q psy17376         31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGED  109 (227)
Q Consensus        31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsD  109 (227)
                      +++|+|.+|+||+..|+|||+.||.|||||  .+|.          ...|.+.+|+|. ++||+..|+|||+.||.||||
T Consensus         5 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE--~~C~----------~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsD   72 (80)
T 2fcw_B            5 QAEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCP----------VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD   72 (80)
T ss_dssp             TTEEECTTSCEEEGGGTTSSSCCSTTCTTT--TTHH----------HHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGG
T ss_pred             CCccCCCCCCEEeeecccCCcccCCCcccc--cccc----------cccCCceeeECCCCCEEecccccCCCcCCCCCCC
Confidence            799999999999999999999999999999  8885          345889999999 999999999999999999999


Q ss_pred             c--cCCC
Q psy17376        110 E--IDCK  114 (227)
Q Consensus       110 E--~~C~  114 (227)
                      |  .+|.
T Consensus        73 E~~~~C~   79 (80)
T 2fcw_B           73 EWPQRCR   79 (80)
T ss_dssp             GCGGGC-
T ss_pred             cCcccCC
Confidence            9  6664

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.55  E-value=2.4e-15  Score=143.42  Aligned_cols=104  Identities=26%  Similarity=0.497  Sum_probs=86.3

Q ss_pred             CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-CceecCCCccCCcccCCCCCc
Q psy17376         31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGED  109 (227)
Q Consensus        31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsD  109 (227)
                      ...|.|..+.++...+.+|+..+|.+.+++    |              +...+|+|. ++||+..++|||+.||.|+||
T Consensus       173 ~sl~~C~~~~~~~~~h~~DagV~C~~~~~~----c--------------~~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sD  234 (565)
T 2xrc_A          173 TSLAECTFTKRRTMGYQDFADVVCYTQKAD----S--------------PMDDFFQCVNGKYISQMKACDGINDCGDQSD  234 (565)
T ss_dssp             SCGGGSEEECCCCCSSCCCCEEEBCCC---------------------------CBCTTSCBCCTTSTTSSSCCSSSSSS
T ss_pred             CchhhcccCcccccccccCCceeccccccC----C--------------CCcCeeECCCCCccCHHHcCCCcccCCCCcc
Confidence            455788776678888899999999887665    2              234569999 999999999999999999999


Q ss_pred             ccCCCCCCcCCCceecCCCceecCCcccCCCCCCCCCCCCCCCCC
Q psy17376        110 EIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSL  154 (227)
Q Consensus       110 E~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~  154 (227)
                      |.+|.  .|++.+|+|.++.||+..++|||..||.||+||.+|..
T Consensus       235 E~~C~--~c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~~  277 (565)
T 2xrc_A          235 ELCCK--ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAG  277 (565)
T ss_dssp             SSSBS--SCSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSSCC-
T ss_pred             ccccc--ccCCCceecCCCcccCccccCCCcccCCCCccccCcCC
Confidence            99997  49999999999999999999999999999999999864

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.40  E-value=2e-13  Score=130.15  Aligned_cols=89  Identities=29%  Similarity=0.619  Sum_probs=72.3

Q ss_pred             CCceeecCCCCCCCcCCCccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcee
Q psy17376          7 HEVYHKVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFR   86 (227)
Q Consensus         7 ~~~cdg~~dc~~~~d~~~~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~   86 (227)
                      ...+|+.++|.....    .|. ...+|+|.+|.||+..++|||+.||.|+|||  .+|.            .|.+.+|+
T Consensus       187 ~h~~DagV~C~~~~~----~c~-~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE--~~C~------------~c~~~~~~  247 (565)
T 2xrc_A          187 GYQDFADVVCYTQKA----DSP-MDDFFQCVNGKYISQMKACDGINDCGDQSDE--LCCK------------ACQGKGFH  247 (565)
T ss_dssp             SSCCCCEEEBCCC--------------CBCTTSCBCCTTSTTSSSCCSSSSSSS--SSBS------------SCSSSCEE
T ss_pred             ccccCCceecccccc----CCC-CcCeeECCCCCccCHHHcCCCcccCCCCccc--cccc------------ccCCCcee
Confidence            345677777775432    232 1466999999999999999999999999999  8896            38889999


Q ss_pred             cC-CceecCCCccCCcccCCCCCcccCCC
Q psy17376         87 CS-NSCIDHLKRCDRTQDCELGEDEIDCK  114 (227)
Q Consensus        87 C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~  114 (227)
                      |. +.||+..++|||..||.+|+||.+|.
T Consensus       248 C~~~~C~~~~~~cdG~~dC~~gsDE~~C~  276 (565)
T 2xrc_A          248 CKSGVCIPSQYQCNGEVDCITGEDEVGCA  276 (565)
T ss_dssp             ETTTEEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred             cCCCcccCccccCCCcccCCCCccccCcC
Confidence            99 99999999999999999999999986

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.37  E-value=3.4e-15  Score=126.12  Aligned_cols=124  Identities=15%  Similarity=0.178  Sum_probs=96.3

Q ss_pred             CCCCCCCcCCCcc-CCCCCCceec--CCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecCCc
Q psy17376         14 LDVPRTQARQKVS-CNSSRPIFQC--NQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS   90 (227)
Q Consensus        14 ~dc~~~~d~~~~~-C~~~~~~F~C--~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~~~   90 (227)
                      .+|.+++||.+.. |.  ..+|+|  .+|+|||..|+|||..||.|||||  .+|.          ..+|.+.+|+|.  
T Consensus        41 ~~c~d~sDE~~C~~C~--~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE--~~C~----------~~~C~~~~F~c~--  104 (215)
T 2gtl_O           41 GSLRHRVEELEDPSCD--EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE--KDCT----------LPTKAGDKFIGD--  104 (215)
T ss_dssp             HHHHHHHHHHSCCSSC--TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHH--HCCC----------CSSCTTCEEEEE--
T ss_pred             ccCCcchhhccCCCCC--CcceeeCCCCCcCccccccCCCCCcCCCcccc--cCCC----------CCCcCCCceeee--
Confidence            3566777776653 54  799999  689999999999999999999999  8997          457999999882  


Q ss_pred             eecCCCccCCcccCCCCCcccCCCCCCcC--CCceecCCC---ceec-----------CCcccCCCCCCCCCCCCCCCCC
Q psy17376         91 CIDHLKRCDRTQDCELGEDEIDCKTYMCP--VSHYKCSND---FCIP-----------LDKVCNFIDDCGDNSDEMECSL  154 (227)
Q Consensus        91 Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~--~~~f~C~~g---~Ci~-----------~~~~CDg~~DC~DgsDE~~C~~  154 (227)
                        +     + ...|.+.+++..|.. .|.  ..+|+|..+   .||.           .++.|||+.+  ++++|..|..
T Consensus       105 --~-----~-~~~C~~~~~~~~c~~-~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~~~p  173 (215)
T 2gtl_O          105 --V-----C-FDHCTKRRPEHMTLA-FESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLTIHP  173 (215)
T ss_dssp             --E-----E-EESSCSSCCSEEEEE-EEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEEECC
T ss_pred             --E-----C-CCcccCCCCCCceee-eeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCcceeeecC
Confidence              2     1 234777888877642 333  356888776   3777           7889999999  6999999987


Q ss_pred             CCc--CceecCC
Q psy17376        155 FTF--LSFRLNK  164 (227)
Q Consensus       155 ~~C--~~f~C~~  164 (227)
                      +.+  .+|+|..
T Consensus       174 p~~~~l~f~C~~  185 (215)
T 2gtl_O          174 PEEDGLGLVGEF  185 (215)
T ss_dssp             SSTTTEEEEEEE
T ss_pred             CCCCCceeEEEe
Confidence            777  6788854

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.16  E-value=1.9e-12  Score=109.22  Aligned_cols=60  Identities=25%  Similarity=0.417  Sum_probs=42.6

Q ss_pred             cccCCCCCcccCCCCCCcCCCceec--CCCceecCCcccCCCCCCCCCCCCCCCCCCCc--Cceec
Q psy17376        101 TQDCELGEDEIDCKTYMCPVSHYKC--SNDFCIPLDKVCNFIDDCGDNSDEMECSLFTF--LSFRL  162 (227)
Q Consensus       101 ~~DC~dgsDE~~C~~~~C~~~~f~C--~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~~~C--~~f~C  162 (227)
                      ..+|.+++||.+|.  .|++.+|+|  .+|+|||.+|+|||..||.|||||.+|...+|  .+|+|
T Consensus        40 ~~~c~d~sDE~~C~--~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c  103 (215)
T 2gtl_O           40 AGSLRHRVEELEDP--SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG  103 (215)
T ss_dssp             HHHHHHHHHHHSCC--SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEE
T ss_pred             cccCCcchhhccCC--CCCCcceeeCCCCCcCccccccCCCCCcCCCcccccCCCCCCcCCCceee
Confidence            45677777777774  577777777  56777777777777777777777777766666  66766

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.15  E-value=2.1e-11  Score=75.33  Aligned_cols=35  Identities=34%  Similarity=0.704  Sum_probs=26.6

Q ss_pred             cCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       118 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      |...+|+|.+|+||+.+++|||+.||.|||||.+|
T Consensus         2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C   36 (37)
T 1ajj_A            2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCCCceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence            55667777777777777777777777777777766

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.12  E-value=9.5e-12  Score=89.75  Aligned_cols=62  Identities=23%  Similarity=0.379  Sum_probs=52.4

Q ss_pred             CCCCCCCceecC--CceecCCCccCCcccCCCCCccc---CCC-CCCcCCCceecCC--CceecCCcccC
Q psy17376         77 PLGCLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEI---DCK-TYMCPVSHYKCSN--DFCIPLDKVCN  138 (227)
Q Consensus        77 ~~~C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~---~C~-~~~C~~~~f~C~~--g~Ci~~~~~CD  138 (227)
                      ...|.+.+|+|.  ++|||.+|+|||+.||.|||||.   .|. ..+|.+.+|+|.+  ++||+..+...
T Consensus         6 ~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~gL   75 (80)
T 2kny_A            6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRKL   75 (80)
T ss_dssp             SCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTTT
T ss_pred             CCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHHH
Confidence            456889999997  79999999999999999999998   476 3579899999988  67988776544

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.11  E-value=2.8e-11  Score=87.26  Aligned_cols=65  Identities=25%  Similarity=0.407  Sum_probs=51.9

Q ss_pred             CccCCCCCCceecC-CCceEeCCCccCCCCCCCCCCCCCC-CCCCCCcccCCCCCCCCCCCCceecC---CceecCCCcc
Q psy17376         24 KVSCNSSRPIFQCN-QTQCILETSLCNGIPECGNGRDESV-AMCGEYNIRDLLPNPLGCLPNEFRCS---NSCIDHLKRC   98 (227)
Q Consensus        24 ~~~C~~~~~~F~C~-~g~CI~~~~~CDg~~DC~DgSDE~~-~~C~~~~~~~~~~~~~~C~~~~f~C~---~~Ci~~~~~C   98 (227)
                      ...|.  +++|+|. +|.|||..|+|||+.||.|||||.. .+|.         ...+|.+.+|+|.   ++||+..+..
T Consensus         6 ~~~C~--~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~---------~~~~C~~~~f~c~~~~~~ci~~~~~g   74 (80)
T 2kny_A            6 GKTCG--PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL---------YNSTGSGSGSGSTEELRVRLASHLRK   74 (80)
T ss_dssp             SCCCS--SSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCS---------SSSTTTTCSSCHHHHHHHHTTTTTTT
T ss_pred             CCCCC--CCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCC---------CCcccCcccchhhhHHHHHHHHHHHH
Confidence            35565  7899998 5899999999999999999999932 1454         2457999999997   6888887654


Q ss_pred             C
Q psy17376         99 D   99 (227)
Q Consensus        99 D   99 (227)
                      .
T Consensus        75 L   75 (80)
T 2kny_A           75 L   75 (80)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.09  E-value=4.4e-11  Score=73.85  Aligned_cols=34  Identities=32%  Similarity=0.742  Sum_probs=32.0

Q ss_pred             CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      ..+|+|.+|+||+..|+|||+.||.|||||  .+|.
T Consensus         4 ~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE--~~C~   37 (37)
T 1ajj_A            4 AFEFHCLSGECIHSSWRCDGGPDCKDKSDE--ENCA   37 (37)
T ss_dssp             TTCEECTTSCEECGGGTTSSSCCSTTCGGG--TTCC
T ss_pred             CCceEcCCCCeechhhccCCCCCCCCCccc--cCCC
Confidence            789999999999999999999999999999  7773

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.08  E-value=1.1e-10  Score=74.01  Aligned_cols=37  Identities=38%  Similarity=0.858  Sum_probs=28.6

Q ss_pred             CcCCCceecC-CCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCS-NDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       117 ~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      .|...+|+|. +|+||+..++|||+.||.|||||.+|.
T Consensus         3 ~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~   40 (42)
T 1cr8_A            3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCC
Confidence            4667778886 477888888888888888888887775

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.07  E-value=8.9e-11  Score=74.85  Aligned_cols=36  Identities=39%  Similarity=0.944  Sum_probs=28.7

Q ss_pred             CcCCCceecCC-CceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSN-DFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      .|+..+|+|.+ |+||+..++|||+.||.|||||.+|
T Consensus         6 ~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C   42 (43)
T 2jm4_A            6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC   42 (43)
T ss_dssp             SCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred             CCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence            56677888877 7788888888888888888888776

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.07  E-value=7.5e-11  Score=75.55  Aligned_cols=37  Identities=41%  Similarity=0.840  Sum_probs=25.9

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      .|...+|+|.+|+||+..++|||+.||.|||||.+|.
T Consensus         7 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~   43 (44)
T 3a7q_B            7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP   43 (44)
T ss_dssp             -CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred             CCCCCceEcCCCCEeChhhccCCCCCCCCCccccCCC
Confidence            4556677777777777777777777777777777664

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.06  E-value=1.3e-10  Score=74.01  Aligned_cols=39  Identities=41%  Similarity=0.981  Sum_probs=34.5

Q ss_pred             CccCCCCCCceecCC-CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         24 KVSCNSSRPIFQCNQ-TQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        24 ~~~C~~~~~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      ...|.  .++|+|.+ |+||+..|+|||+.||.|||||  .+|.
T Consensus         4 ~~~C~--~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE--~~C~   43 (43)
T 2jm4_A            4 DVKCS--LGYFPCGNITKCLPQLLHCNGVDDCGNQADE--DNCG   43 (43)
T ss_dssp             SCSCC--TTEEECSSSSCEEEGGGTTSSCCCSSSCCTT--SSCC
T ss_pred             CCCCC--CCeeECCCCCeEcCHhhccCCCCCCCCCccc--CCCC
Confidence            34565  78999999 8999999999999999999999  7773

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.05  E-value=1.1e-10  Score=72.83  Aligned_cols=36  Identities=31%  Similarity=0.803  Sum_probs=29.6

Q ss_pred             cCCCceecCC--CceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        118 CPVSHYKCSN--DFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       118 C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      |++.+|+|.+  |+||+.+|+|||+.||.|||||.+|.
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~   38 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence            4567888876  78888888888888888888888875

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.04  E-value=1.2e-10  Score=74.65  Aligned_cols=38  Identities=29%  Similarity=0.669  Sum_probs=33.0

Q ss_pred             ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      ..|.  ..+|+|.+|+||+..|+|||+.||.|||||  .+|.
T Consensus         6 ~~C~--~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE--~~C~   43 (44)
T 3a7q_B            6 KECE--KDQFQCRNERCIPSVWRCDEDDDCLDHSDE--DDCP   43 (44)
T ss_dssp             --CC--TTEEECTTSCEEEGGGTTSSSCCSSSSTTT--SCC-
T ss_pred             CCCC--CCceEcCCCCEeChhhccCCCCCCCCCccc--cCCC
Confidence            4565  689999999999999999999999999999  7874

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.03  E-value=1.7e-10  Score=74.29  Aligned_cols=37  Identities=32%  Similarity=0.681  Sum_probs=33.2

Q ss_pred             ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      ..|.  ..+|+|.+|+||+..|+|||+.||.|||||  ..|
T Consensus         4 ~~C~--~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE--~~c   40 (45)
T 1d2l_A            4 PQCQ--PGEFACANSRCIQERWKCDGDNDCLDNSDE--APA   40 (45)
T ss_dssp             CBTT--BTCEEETTTEEECGGGTTTSSCTTTTCSTT--STT
T ss_pred             CcCC--CCceEcCCCCeEehhhccCCCCCCCCCCCC--CCC
Confidence            4565  789999999999999999999999999999  555

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.03  E-value=2e-10  Score=72.81  Aligned_cols=37  Identities=32%  Similarity=0.706  Sum_probs=33.3

Q ss_pred             cCCCCCCceecCC-CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         26 SCNSSRPIFQCNQ-TQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        26 ~C~~~~~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      .|.  .++|+|.+ |+||+..|+|||+.||.|||||  .+|.
T Consensus         3 ~C~--~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE--~~C~   40 (42)
T 1cr8_A            3 GCH--TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE--KSCE   40 (42)
T ss_dssp             CSS--TTCEECTTTCCEECGGGSSSSSCCSSSSTTT--TTCC
T ss_pred             CCC--CCceEeCCCCeEcChhhcCCCCcCCCCCCcc--cCCC
Confidence            455  79999985 8999999999999999999999  7885

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.01  E-value=1.5e-10  Score=74.60  Aligned_cols=36  Identities=36%  Similarity=0.664  Sum_probs=25.0

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      .|+..+|+|.+|+||+..|+|||+.||.|||||..|
T Consensus         5 ~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             BTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCCC
Confidence            455666777777777777777777777777777655

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.01  E-value=1.9e-10  Score=71.81  Aligned_cols=35  Identities=37%  Similarity=0.782  Sum_probs=32.3

Q ss_pred             CCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         30 SRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        30 ~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      ++.+|+|.+  |+|||..|+|||+.||.|||||  .+|.
T Consensus         2 ~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE--~~C~   38 (39)
T 3dpr_E            2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE--ENCG   38 (39)
T ss_dssp             CTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTS--TTCC
T ss_pred             CCCceecCCCCCCEeCccccCCCcccCcCCccc--ccCC
Confidence            368999997  8999999999999999999999  8885

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.00  E-value=1e-10  Score=77.49  Aligned_cols=37  Identities=43%  Similarity=0.947  Sum_probs=22.2

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      .|+..+|+|.+|+||+..|+|||..||.|||||.+|.
T Consensus         6 ~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~~   42 (52)
T 2m0p_A            6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN   42 (52)
T ss_dssp             SSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHSCC
T ss_pred             CCCCCceECCCCCEEecCccCCCCCCCCCCCccccch
Confidence            4555566666666666666666666666666665553

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.99  E-value=1.1e-10  Score=76.20  Aligned_cols=37  Identities=38%  Similarity=0.834  Sum_probs=27.6

Q ss_pred             CcCCCceecCCC-ceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       117 ~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      .|.+.+|+|.+| +||+..++|||+.||.|||||.+|.
T Consensus         6 ~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~   43 (48)
T 2i1p_A            6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP   43 (48)
T ss_dssp             CCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred             CCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence            566677777777 6777777777777777777777765

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.98  E-value=1.2e-10  Score=77.11  Aligned_cols=39  Identities=33%  Similarity=0.842  Sum_probs=35.0

Q ss_pred             CccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        24 ~~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      ...|.  .++|+|.+|+||+..|+|||..||.|||||  .+|.
T Consensus         4 p~~C~--~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE--~~~~   42 (52)
T 2m0p_A            4 PASCL--DTQYTCDNHQCISKNWVCDTDNDCGDGSDE--KNCN   42 (52)
T ss_dssp             CCSSC--SSEEECTTCCEEETTSTTSSSCSSSSCHHH--HSCC
T ss_pred             CCCCC--CCceECCCCCEEecCccCCCCCCCCCCCcc--ccch
Confidence            45666  799999999999999999999999999999  7775

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.98  E-value=1.5e-10  Score=75.07  Aligned_cols=36  Identities=39%  Similarity=0.935  Sum_probs=28.3

Q ss_pred             CcCCCceecC-----CCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      .|++.+|+|.     +++||+.+|+|||+.||.|||||.+|
T Consensus         6 ~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C   46 (47)
T 1k7b_A            6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   46 (47)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence            4667788886     67788888888888888888888766

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.98  E-value=1.7e-10  Score=74.87  Aligned_cols=38  Identities=39%  Similarity=0.891  Sum_probs=32.8

Q ss_pred             CccCCCCCCceecC-----CCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         24 KVSCNSSRPIFQCN-----QTQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        24 ~~~C~~~~~~F~C~-----~g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      ...|.  ..+|+|.     +|+|||..|+|||+.||.|||||  .+|
T Consensus         4 ~~~C~--~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE--~~C   46 (47)
T 1k7b_A            4 FGSCP--PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGC   46 (47)
T ss_dssp             --CCS--TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTT--GGG
T ss_pred             CCCCC--CCceEcCCCCCCCCcCCCccccCCCcCCCCCCccc--CCC
Confidence            34565  7999998     78999999999999999999999  776

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.93  E-value=6.7e-10  Score=73.04  Aligned_cols=37  Identities=32%  Similarity=0.687  Sum_probs=26.2

Q ss_pred             CCCCCCceecC--CceecCCCccCCcccCCCCCcccCCC
Q psy17376         78 LGCLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCK  114 (227)
Q Consensus        78 ~~C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~  114 (227)
                      ..|.+.+|+|.  ++||+..|+|||+.||.|||||..|.
T Consensus         5 ~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C~   43 (50)
T 2knx_A            5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA   43 (50)
T ss_dssp             CTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred             CCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCcccccc
Confidence            34666777773  67777777777777777777777653

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.93  E-value=1.3e-10  Score=75.33  Aligned_cols=38  Identities=37%  Similarity=0.870  Sum_probs=31.0

Q ss_pred             CCcCCCceecC-----CCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        116 YMCPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       116 ~~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      ..|+..+|+|.     +++||+..|+|||+.||.|||||.+|.
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~   45 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   45 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence            35777888887     678898888999999999999887764

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.93  E-value=5.5e-10  Score=73.47  Aligned_cols=39  Identities=31%  Similarity=0.790  Sum_probs=33.8

Q ss_pred             CccCCCCCCceecC-CCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         24 KVSCNSSRPIFQCN-QTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        24 ~~~C~~~~~~F~C~-~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      ...|.  ..+|+|. +|+||+..|+|||+.||.|||||  ..|.
T Consensus         4 ~~~C~--~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE--~~C~   43 (50)
T 2knx_A            4 GKTCG--PSSFSCPGTHVCVPERWLCDGDKDCADGADE--SIAA   43 (50)
T ss_dssp             TCTTC--TTEEEETTTTEEEETTTTTSSSCCSTTCGGG--SGGG
T ss_pred             CCCCC--CCcEEcCCCCeEcChhhcCCCCCCCCCCCcc--cccc
Confidence            34565  7999995 89999999999999999999999  6664

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.92  E-value=2.7e-10  Score=72.91  Aligned_cols=36  Identities=39%  Similarity=0.849  Sum_probs=27.9

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      .|++.+|+|.+|+||+..++|||+.||.|||||.+|
T Consensus         4 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~   39 (44)
T 1j8e_A            4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCCc
Confidence            566777888888888888888888888888888653

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.88  E-value=4.1e-10  Score=72.05  Aligned_cols=33  Identities=42%  Similarity=0.925  Sum_probs=30.9

Q ss_pred             cCCCCCCceecCCCceEeCCCccCCCCCCCCCCCC
Q psy17376         26 SCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDE   60 (227)
Q Consensus        26 ~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE   60 (227)
                      .|.  +.+|+|.+|+|||..|+|||+.||.|+|||
T Consensus         4 ~C~--~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE   36 (44)
T 1j8e_A            4 SCS--STQFKCNSGRCIPEHWTCDGDNDCGDYSDE   36 (44)
T ss_dssp             SSC--TTEEECTTSCEEEGGGTTSSSCCSSSSGGG
T ss_pred             CCC--CCceEeCCCCeEecCcccCCCCCCCCCCCC
Confidence            454  789999999999999999999999999999

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.86  E-value=4.1e-10  Score=73.41  Aligned_cols=37  Identities=32%  Similarity=0.830  Sum_probs=33.9

Q ss_pred             cCCCCCCceecCCC-ceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         26 SCNSSRPIFQCNQT-QCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        26 ~C~~~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      .|.  ..+|+|.+| +||+..|+|||+.||.|||||  .+|.
T Consensus         6 ~C~--~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE--~~C~   43 (48)
T 2i1p_A            6 NCT--SAQFKCADGSSCINSRYRCDGVYDCRDNSDE--AGCP   43 (48)
T ss_dssp             CCC--SSSEECSSSSCEECGGGSSSSSCCSSSSHHH--HSSC
T ss_pred             CCC--CCeeECCCCCEeCCHhhcCCCCCCCCCCccc--ccCC
Confidence            455  789999998 899999999999999999999  8886

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.83  E-value=4.8e-10  Score=72.66  Aligned_cols=37  Identities=41%  Similarity=1.012  Sum_probs=32.8

Q ss_pred             cCCCCCCceecC-----CCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         26 SCNSSRPIFQCN-----QTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        26 ~C~~~~~~F~C~-----~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      .|.  ..+|+|.     +++|||..|+|||+.||.|||||  .+|.
T Consensus         4 ~C~--~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE--~~C~   45 (47)
T 1jrf_A            4 RCP--PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGCG   45 (47)
T ss_dssp             CCC--CCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTT--HHHH
T ss_pred             CCC--CCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccc--ccCC
Confidence            455  7899998     68999999999999999999999  7764

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.63  E-value=1.7e-08  Score=84.85  Aligned_cols=59  Identities=27%  Similarity=0.692  Sum_probs=44.5

Q ss_pred             CccCCCCCCceecC--CCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCC-CCCCCce--ecC-CceecC
Q psy17376         24 KVSCNSSRPIFQCN--QTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPL-GCLPNEF--RCS-NSCIDH   94 (227)
Q Consensus        24 ~~~C~~~~~~F~C~--~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~-~C~~~~f--~C~-~~Ci~~   94 (227)
                      ...|.  ..+|+|.  +|+||+..|+|||.+||.|||||.+.+|.          .. +|.+.+|  +|. +.|+.+
T Consensus        50 ~~~C~--~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~----------~~~tc~~~qF~g~~~~d~C~kr  114 (220)
T 2gtl_N           50 GTHCE--KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD----------TSVVKAGNVFSGTSTWHGCLAR  114 (220)
T ss_dssp             CCSSC--TTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGC----------GGGGCTTCEEEEEEEECSSCCC
T ss_pred             CCCCC--CCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCC----------CCCccCCcceeeEecCChhhcC
Confidence            45676  6899995  58999999999999999999999555897          33 5655554  454 555444

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.60  E-value=2e-08  Score=84.44  Aligned_cols=55  Identities=27%  Similarity=0.577  Sum_probs=40.1

Q ss_pred             CCCCCceecC---CceecCCCccCCcccCCCCCccc--CCCCC-CcCCCce--ecCCCceecC
Q psy17376         79 GCLPNEFRCS---NSCIDHLKRCDRTQDCELGEDEI--DCKTY-MCPVSHY--KCSNDFCIPL  133 (227)
Q Consensus        79 ~C~~~~f~C~---~~Ci~~~~~CDG~~DC~dgsDE~--~C~~~-~C~~~~f--~C~~g~Ci~~  133 (227)
                      .|.+.+|+|.   ++||+..|+|||..||.|||||.  +|... +|.+.+|  +|.++.|+.+
T Consensus        52 ~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d~C~kr  114 (220)
T 2gtl_N           52 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAR  114 (220)
T ss_dssp             SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEECSSCCC
T ss_pred             CCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCChhhcC
Confidence            5777888883   68888888888888888888885  78766 6665544  5666666544

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.43  E-value=1.1e-07  Score=80.33  Aligned_cols=41  Identities=27%  Similarity=0.754  Sum_probs=34.3

Q ss_pred             CccCCCCCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         24 KVSCNSSRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        24 ~~~C~~~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      ...|.  +.+|+|.+  |.||+..|+|||..||.|||||.+.+|.
T Consensus        51 ~~~C~--~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~   93 (217)
T 2gtl_M           51 EHHCD--EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS   93 (217)
T ss_dssp             CCCCC--TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHC
T ss_pred             CCCCC--CCceecCCCCCcEechhhccCCCCCCCCCCccccCcCC
Confidence            34565  79999975  9999999999999999999999322786

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.32  E-value=2.5e-07  Score=78.04  Aligned_cols=38  Identities=37%  Similarity=0.730  Sum_probs=26.5

Q ss_pred             CCCCCCceec--C-CceecCCCccCCcccCCCCCccc--CCCC
Q psy17376         78 LGCLPNEFRC--S-NSCIDHLKRCDRTQDCELGEDEI--DCKT  115 (227)
Q Consensus        78 ~~C~~~~f~C--~-~~Ci~~~~~CDG~~DC~dgsDE~--~C~~  115 (227)
                      ..|.+.+|+|  . |+||+..|+|||..||.|||||.  +|..
T Consensus        52 ~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~   94 (217)
T 2gtl_M           52 HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSL   94 (217)
T ss_dssp             CCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCC
T ss_pred             CCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCC
Confidence            4577777777  3 67777777777777777777776  5643

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.08  E-value=2.4e-06  Score=80.99  Aligned_cols=53  Identities=32%  Similarity=0.709  Sum_probs=40.6

Q ss_pred             ccCC-CCCcccCCCC-CCcCC----CceecC-CCceecCCcccCCCCCCCCCCCCCCCCC
Q psy17376        102 QDCE-LGEDEIDCKT-YMCPV----SHYKCS-NDFCIPLDKVCNFIDDCGDNSDEMECSL  154 (227)
Q Consensus       102 ~DC~-dgsDE~~C~~-~~C~~----~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~C~~  154 (227)
                      ..|. ...|+..|.. ..|+.    .+|+|. +|+||+..|+|||..||.|+|||.+|..
T Consensus        44 ~~C~~~l~d~~~C~~~~~C~~~~~c~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c~~  103 (537)
T 3ojy_B           44 EPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRR  103 (537)
T ss_dssp             CCCCSCSEEEEECCCCCCCCCCSCCSSEECTTTCCEECGGGTTSSSCCSSSSCTTSSCSS
T ss_pred             CcCccchhhhccCCCccccccCCCCCccCcCCCCcEeeccccCCCCCCCCCccccccCCC
Confidence            3444 3356666632 23422    689998 9999999999999999999999999964

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.98  E-value=4.2e-06  Score=79.59  Aligned_cols=72  Identities=25%  Similarity=0.523  Sum_probs=48.4

Q ss_pred             CCCCceecCCceecCCCccCCcccCCCC-CcccCCCC-CCcC-----CCceecC-CCceecCCcccCCCCCCCCCCCCCC
Q psy17376         80 CLPNEFRCSNSCIDHLKRCDRTQDCELG-EDEIDCKT-YMCP-----VSHYKCS-NDFCIPLDKVCNFIDDCGDNSDEME  151 (227)
Q Consensus        80 C~~~~f~C~~~Ci~~~~~CDG~~DC~dg-sDE~~C~~-~~C~-----~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~  151 (227)
                      |...+++-  +.|.......| ..|... .|+..|.. ..|+     ..+|+|. +|+||+..++|||..||.|+|||.+
T Consensus        23 C~~~~~R~--R~v~~p~q~gG-~~C~~~l~d~~~C~~~~~c~~~~~c~~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~   99 (554)
T 3ojy_A           23 CQDKKYRH--RSLLQPNKFGG-TICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD   99 (554)
T ss_dssp             TTCEEEEE--CCEEECBCSSC-CCCCSCSEEEEECCCCCCC--CCCCSSSEECSSSCCEECGGGTTSSSCCSSSCTTSSS
T ss_pred             CCCccEee--EeeccccccCC-CCCCCccccccCCCCCCCCcccCCCCCcCccCCCCEEcccccccCCcccCCCcccccc
Confidence            44334433  33443333333 446553 56666642 2332     2699998 9999999999999999999999999


Q ss_pred             CCC
Q psy17376        152 CSL  154 (227)
Q Consensus       152 C~~  154 (227)
                      |..
T Consensus       100 C~~  102 (554)
T 3ojy_A          100 CED  102 (554)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            974

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.90  E-value=7.8e-06  Score=77.48  Aligned_cols=80  Identities=21%  Similarity=0.508  Sum_probs=54.0

Q ss_pred             ceEeCCCccCCCCCCCC-CCCCCCCCCCCCcccCCCCCCCCCCCCceecC--CceecCCCccCCcccCCCCCcccCCCCC
Q psy17376         40 QCILETSLCNGIPECGN-GRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCKTY  116 (227)
Q Consensus        40 ~CI~~~~~CDg~~DC~D-gSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~~~  116 (227)
                      +.|.......| ..|.. ..|+  ..|....   .......|  .+|+|.  |+||+..|+|||..||.|+|||.+|.. 
T Consensus        33 R~v~~p~q~gG-~~C~~~l~d~--~~C~~~~---~C~~~~~c--~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c~~-  103 (537)
T 3ojy_B           33 AYLLQPSQFHG-EPCNFSDKEV--EDCVTNR---PCRSQVRC--EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRR-  103 (537)
T ss_dssp             CCEEECEETTC-CCCCSCSEEE--EECCCCC---CCCCCSCC--SSEECTTTCCEECGGGTTSSSCCSSSSCTTSSCSS-
T ss_pred             eeeccccccCC-CcCccchhhh--ccCCCcc---ccccCCCC--CccCcCCCCcEeeccccCCCCCCCCCccccccCCC-
Confidence            34555455444 46664 4666  6675110   01123346  799997  999999999999999999999998862 


Q ss_pred             CcCCCceecCCCceec
Q psy17376        117 MCPVSHYKCSNDFCIP  132 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~  132 (227)
                          ..+.|..+.+|+
T Consensus       104 ----~~~~C~~~~~~~  115 (537)
T 3ojy_B          104 ----IYKKCQHEMDQY  115 (537)
T ss_dssp             ----CSSCCSSCCBCC
T ss_pred             ----CCCccccCcCCC
Confidence                345676666666

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.71  E-value=2.3e-05  Score=74.60  Aligned_cols=33  Identities=36%  Similarity=0.832  Sum_probs=31.8

Q ss_pred             CceecC-CCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         32 PIFQCN-QTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        32 ~~F~C~-~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      .+|+|. +|+||+..|+|||..||.|+|||  .+|.
T Consensus        68 ~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE--~~C~  101 (554)
T 3ojy_A           68 QDFQCKETGRCLKRHLVCNGDQDCLDGSDE--DDCE  101 (554)
T ss_dssp             SSEECSSSCCEECGGGTTSSSCCSSSCTTS--SSCC
T ss_pred             CcCccCCCCEEcccccccCCcccCCCcccc--ccCC
Confidence            799999 89999999999999999999999  8897

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.29  E-value=0.00015  Score=72.51  Aligned_cols=35  Identities=40%  Similarity=0.848  Sum_probs=32.7

Q ss_pred             CceecCCCceecCCcccCCCCCCCCCCCCCCCCCC
Q psy17376        121 SHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLF  155 (227)
Q Consensus       121 ~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~~  155 (227)
                      ..|+|.+|+||+..++|||..||.|+|||.+|...
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C~~~  155 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCGRT  155 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTCSSC
T ss_pred             cccccCCCceEccceecCCcccCCCccccccCCCC
Confidence            57999999999999999999999999999999753

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=96.71  E-value=0.00053  Score=68.65  Aligned_cols=33  Identities=39%  Similarity=0.949  Sum_probs=31.6

Q ss_pred             CceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         32 PIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        32 ~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      .+|+|.+|+||+..|+|||..||.|+|||  .+|.
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde--~~C~  153 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDCGDNSDE--RDCG  153 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCSSSSGGG--TTCS
T ss_pred             cccccCCCceEccceecCCcccCCCcccc--ccCC
Confidence            67999999999999999999999999999  8897

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-08
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-06
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-08
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-05
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-08
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-05
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	0.001
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	4e-08
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	7e-06
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	0.004
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	6e-08
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	7e-05
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	6e-04
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	6e-08
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-05
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	8e-05
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	2e-07
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	1e-04
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	1e-04
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	1e-06
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	6e-05
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-06
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-06
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-06
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	3e-05
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	0.001
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	4e-06
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	4e-05
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	5e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	4e-05
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	1e-05
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	4e-05
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	3e-05
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	0.001
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	6e-05
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	0.002

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 2e-08
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C    ++CS+  CI   + C+   DC D SDE+ C
Sbjct: 3   CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 3e-06
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCK 114
           C P+EF+CS+ +CI   ++CDR  DC+   DE+ C 
Sbjct: 3   CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV 38

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 3e-08
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           C    + C +  CI     C+   DC D SDE  C+
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C   EF C +  CI    RCD   DC+   DE +C
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 3e-08
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C  + +KC++  CIP    C+  +DCGD SDE   
Sbjct: 5   CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 80  CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDCK 114
           C   +F+C++  CI     CD   DC    DE    
Sbjct: 5   CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.001
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
          F+CN  +CI E   C+G  +CG+  DE+ A C
Sbjct: 10 FKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (109), Expect = 4e-08
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C  + ++C +  CI    VC+   DC D SDE  C
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (93), Expect = 7e-06
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C   EFRC +  CI     CD  +DC  G DE  C
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (73), Expect = 0.004
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDE 60
          F+C+  +CI    +C+   +C +G DE
Sbjct: 8  FRCHDGKCISRQFVCDSDRDCLDGSDE 34

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 6e-08
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           C  + ++C +  CI    VC+   +C D SDE + +
Sbjct: 8   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 7e-05
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C  NEF+C +  CI +   CD + +C+ G DE   
Sbjct: 8   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 6e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
          FQC   +CI    +C+G  EC +G DES   C
Sbjct: 13 FQCQDGKCISYKWVCDGSAECQDGSDESQETC 44

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 6e-08
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           C    + C+N  CI     C+  +DC DNSDE    
Sbjct: 6   CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 4e-05
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEY 68
          F C  ++CI E   C+G  +C +  DE+ A+C ++
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAPALCHQH 45

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 8e-05
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 77  PLGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
           P  C P EF C+NS CI    +CD   DC    DE   
Sbjct: 3   PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C  + ++C++  CIP    C+   DC D SDE   
Sbjct: 3   CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
          ++C  +   FQCN + CI +   C+  P+C +G DE    C
Sbjct: 1  LTCGPAS--FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 39

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 78  LGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
           L C P  F+C++S CI  L  CD   DCE G DE   
Sbjct: 1   LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 118 CPVSHYKC--SNDFCIPLDKVCNFIDDCGDNSDEMECSL 154
           C    ++C   +  CI    VC+  +DC +  DE +C+L
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTL 41

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 37.1 bits (86), Expect = 6e-05
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C  +E +C      CI  L  CD   DC  GEDE DC
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 117 MCPVSHYKC-SNDFCIPLDKVCNFIDDCGDNSDEMECS 153
            C    ++C  +  CIPL   C+   DC D+SDE  C 
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 77  PLGCLPNEFRCSNS--CIDHLKRCDRTQDCELGEDEIDC 113
           P GC  +EF+C     CI    RCD   DC    DE  C
Sbjct: 1   PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 2e-06
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 115 TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           T     + +KC +  CI LDKVCN   DC D SDE   
Sbjct: 4   TLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 3e-05
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCG 66
          F+C+  +CI    +CN   +C +  DE +  CG
Sbjct: 12 FKCHSGECITLDKVCNMARDCRDWSDEPIKECG 44

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 82  PNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           PN+F+C +  CI   K C+  +DC    DE   
Sbjct: 9   PNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 4e-06
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 118 CPVSHYKC--SNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C    + C    + CIP    C+   DC + SDE  C
Sbjct: 5   CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C   +F C      CI    RCD   DC+ G DE  C
Sbjct: 5   CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 5e-06
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 118 CPVSHYKCSN--DFCIPLDKVCNFIDDCGDNSDEMECS 153
           C +    C      CIP+   C+  +DC    DE  C 
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 4e-05
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C  +E  C      CI    RCD   DC+ GEDE +C
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 39.5 bits (92), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 118 CPVSHYKCSNDF-----CIPLDKVCNFIDDCGDNSDEMEC 152
           CP   ++CS        C P D +C+   DC D  DE  C
Sbjct: 2   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 37.6 bits (87), Expect = 4e-05
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 80  CLPNEFRCSNS------CIDHLKRCDRTQDCELGEDEIDC 113
           C P +FRCS        C      CD   DC+ G DE  C
Sbjct: 2   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 37.9 bits (88), Expect = 3e-05
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 118 CPVSHYKCSND--FCIPLDKVCNFIDDCGDNSDEMEC 152
           C    ++C  +   CI    VC+   DC +  DE   
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C    F+C  +   CI  L  CD  +DC    DE   
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 37.1 bits (86), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 118 CPVSHYKCSNDF--CIPLDKVCNFIDDCGDNSDEMEC 152
           C     +C  D   CI     C+   DC D SDE   
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C  +E  C      CI  L  CD  +DC  G DE   
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.22
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.21
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.18
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.18
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.15
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.15
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.14
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.14
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.13
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.11
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.11
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.11
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.1
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.1
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.08
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.04
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.04
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.03
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.01
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.0
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.0
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.0
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	98.99
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.98
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.98
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.96
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.91
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.85
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.83
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.82

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.7e-12  Score=77.84  Aligned_cols=36  Identities=33%  Similarity=0.695  Sum_probs=27.8

Q ss_pred             cCCCceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       118 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      |++++|+|.+|+||+..++|||+.||.|||||.+|+
T Consensus         2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~Cs   37 (37)
T d1ajja_           2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCCCceEcCCCCEECchhcCCCCCcCCCCchhhccC
Confidence            566778887777888888888888888888887764

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4e-12  Score=77.91  Aligned_cols=37  Identities=35%  Similarity=0.763  Sum_probs=29.0

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      +|.+.+|+|.+|+||+.+++|||+.||.|+|||.+|.
T Consensus         2 sC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1f8za_           2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV   38 (39)
T ss_dssp             CCCTTEEECSSSCEEETTTSSSCCCCSTTSGGGSSSC
T ss_pred             CCCCCceEeCCCCeEChhhcCCCCCcCCCCchhccCc
Confidence            5667788888888888888888888888888887774

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.5e-12  Score=77.76  Aligned_cols=37  Identities=35%  Similarity=0.808  Sum_probs=31.8

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      +|++++|+|.+|+||+.+++|||+.||.|||||.+|+
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~Cp   38 (39)
T d2fcwb1           2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP   38 (39)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHH
T ss_pred             cCCCCCEEcCCCCEEcchhcCcCcCcCcCCchhcCCC
Confidence            5778889998888999999999999999999998774

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.1e-11  Score=77.84  Aligned_cols=40  Identities=28%  Similarity=0.703  Sum_probs=34.3

Q ss_pred             ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      +.|.. +++|+|.+|+||+..|+|||+.||.|+|||....|
T Consensus         4 ~~C~~-~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C   43 (44)
T d1xfea2           4 TLCEG-PNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC   43 (44)
T ss_dssp             SSCCS-TTEEECTTSCEEESTTTTCSSCCCSSCSSSCTTTS
T ss_pred             CcCCC-CCeEECCCCCeEchhhcCCCCCCCCCCCccCcccC
Confidence            34543 79999999999999999999999999999965455

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.2e-12  Score=77.86  Aligned_cols=35  Identities=37%  Similarity=0.856  Sum_probs=31.7

Q ss_pred             cCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCC
Q psy17376         26 SCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESV   62 (227)
Q Consensus        26 ~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~   62 (227)
                      +|.  +++|+|.+|.||+..|+|||+.||.|||||.+
T Consensus         2 tC~--~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           2 TCG--PASFQCNSSTCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             HCC--TTEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             ccC--CCceEcCCCCeEChhhcCCCCCCCCCCCcCCC
Confidence            355  78999999999999999999999999999943

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.2e-12  Score=75.68  Aligned_cols=34  Identities=32%  Similarity=0.742  Sum_probs=32.1

Q ss_pred             CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      .++|+|.+|+||+..|+|||+.||.|||||  .+|.
T Consensus         4 ~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE--~~Cs   37 (37)
T d1ajja_           4 AFEFHCLSGECIHSSWRCDGGPDCKDKSDE--ENCA   37 (37)
T ss_dssp             TTCEECTTSCEECGGGTTSSSCCSTTCGGG--TTCC
T ss_pred             CCceEcCCCCEECchhcCCCCCcCCCCchh--hccC
Confidence            789999999999999999999999999999  7873

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-11  Score=75.94  Aligned_cols=37  Identities=30%  Similarity=0.682  Sum_probs=34.1

Q ss_pred             cCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         26 SCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        26 ~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      +|.  +++|+|.+|+||+..|+|||+.||.|+|||  .+|.
T Consensus         2 sC~--~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE--~~C~   38 (39)
T d1f8za_           2 TCR--PDEFQCSDGNCIHGSRQCDREYDCKDMSDE--VGCV   38 (39)
T ss_dssp             CCC--TTEEECSSSCEEETTTSSSCCCCSTTSGGG--SSSC
T ss_pred             CCC--CCceEeCCCCeEChhhcCCCCCcCCCCchh--ccCc
Confidence            455  799999999999999999999999999999  8885

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.5e-12  Score=76.27  Aligned_cols=37  Identities=32%  Similarity=0.858  Sum_probs=33.5

Q ss_pred             cCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         26 SCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        26 ~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      +|.  .++|+|.+|+||+..|+|||+.||.|||||  .+|+
T Consensus         2 tC~--~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE--~~Cp   38 (39)
T d2fcwb1           2 TCS--QAEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCP   38 (39)
T ss_dssp             CCC--TTEEECTTSCEEEGGGTTSSSCCSTTCTTT--TTHH
T ss_pred             cCC--CCCEEcCCCCEEcchhcCcCcCcCcCCchh--cCCC
Confidence            455  789999999999999999999999999999  7773

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.8e-11  Score=75.77  Aligned_cols=36  Identities=33%  Similarity=0.725  Sum_probs=24.8

Q ss_pred             CcCCCceecC--CCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCS--NDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      +|++++|+|.  +++||+.+++|||+.||.|||||.+|
T Consensus         4 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           4 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             ccCCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            5666677774  34577777777777777777777665

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.3e-11  Score=75.27  Aligned_cols=38  Identities=37%  Similarity=0.843  Sum_probs=33.1

Q ss_pred             CccCCCCCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         24 KVSCNSSRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        24 ~~~C~~~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      +.+|.  +++|+|.+  ++|||..|+|||+.||.|||||  .+|
T Consensus         2 s~~C~--~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE--~~C   41 (41)
T d1f5ya2           2 SVTCK--SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGC   41 (41)
T ss_dssp             TTTCC--SSCEECCSSCCCEECGGGTTCSCCCSSSCTTT--TTC
T ss_pred             ccccC--CCceECCCCCCCCccchhcCCCcCcCcCcccc--cCC
Confidence            35676  79999964  6899999999999999999999  776

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.2e-11  Score=76.52  Aligned_cols=36  Identities=31%  Similarity=0.692  Sum_probs=25.5

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      .|++++|+|.+|+||+.+++|||+.||.|||||.+|
T Consensus         7 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c   42 (44)
T d1f5ya1           7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE   42 (44)
T ss_dssp             CCCSSSEECSSSCEECTTTTTSSSCSSSSSGGGTTS
T ss_pred             ccCCCCeEcCCCCeEChhHcCCCcCcCCCCCcCCCC
Confidence            566667777777777777777777777777777665

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.9e-11  Score=76.34  Aligned_cols=39  Identities=33%  Similarity=0.778  Sum_probs=34.1

Q ss_pred             ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      ..|.  .++|+|.+|.||+..++|||+.||.|||||....|
T Consensus         4 ~~C~--~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C   42 (45)
T d1d2la_           4 PQCQ--PGEFACANSRCIQERWKCDGDNDCLDNSDEAPALC   42 (45)
T ss_dssp             CBTT--BTCEEETTTEEECGGGTTTSSCTTTTCSTTSTTTC
T ss_pred             CcCC--CCCeEcCCCCeEChhhhCcCcCcCCCCCCCCcCcC
Confidence            4566  78999999999999999999999999999954444

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.6e-11  Score=74.81  Aligned_cols=37  Identities=38%  Similarity=0.841  Sum_probs=25.5

Q ss_pred             CcCCCceec-CCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKC-SNDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       117 ~C~~~~f~C-~~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      +|.+++|+| .+++||+.+++|||+.||.|+|||.+|.
T Consensus         3 ~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C~   40 (42)
T d1cr8a_           3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCCCceEcCCCCEEccchhcCCCcCcCCCcchhccCC
Confidence            466667777 3456777777777777777777777665

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.3e-11  Score=76.43  Aligned_cols=37  Identities=38%  Similarity=0.809  Sum_probs=33.4

Q ss_pred             ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      ..|.  +++|+|.+|+|||..|+|||+.||.|||||  .+|
T Consensus         6 ~~C~--~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE--~~c   42 (44)
T d1f5ya1           6 DRCE--RNEFQCQDGKCISYKWVCDGSAECQDGSDE--SQE   42 (44)
T ss_dssp             CCCC--SSSEECSSSCEECTTTTTSSSCSSSSSGGG--TTS
T ss_pred             CccC--CCCeEcCCCCeEChhHcCCCcCcCCCCCcC--CCC
Confidence            4565  799999999999999999999999999999  555

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.2e-11  Score=75.01  Aligned_cols=37  Identities=41%  Similarity=0.838  Sum_probs=34.5

Q ss_pred             CCCCCCceecC--CceecCCCccCCcccCCCCCcccCCC
Q psy17376         78 LGCLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCK  114 (227)
Q Consensus        78 ~~C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~  114 (227)
                      .+|.+++|+|.  ++||+.+|+|||+.||.|+|||.+|.
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C~   40 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhccCC
Confidence            46889999996  89999999999999999999999996

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.04  E-value=2e-11  Score=75.56  Aligned_cols=37  Identities=30%  Similarity=0.692  Sum_probs=23.6

Q ss_pred             CcCCCceecC--CCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCS--NDFCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       117 ~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      +|.+++|+|.  +++||+.+|+|||+.||.|+|||.+|.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C~   40 (41)
T d2gtlo2           2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT   40 (41)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred             CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccCc
Confidence            4556666663  355666666666666666666666663

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.2e-11  Score=73.84  Aligned_cols=36  Identities=31%  Similarity=0.806  Sum_probs=25.3

Q ss_pred             cCCCceecCCC--ceecCCcccCCCCCCCCCCCCCCCC
Q psy17376        118 CPVSHYKCSND--FCIPLDKVCNFIDDCGDNSDEMECS  153 (227)
Q Consensus       118 C~~~~f~C~~g--~Ci~~~~~CDg~~DC~DgsDE~~C~  153 (227)
                      |++.+|+|.+|  +||+..++|||+.||.|||||.+|.
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSCC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhccCC
Confidence            44567777654  3777777777777777777777764

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.8e-11  Score=76.05  Aligned_cols=36  Identities=39%  Similarity=0.849  Sum_probs=27.5

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      .|++++|+|.+|+||+..++|||+.||.|+|||.+|
T Consensus         4 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             cCCCCcEEcCCCCEEChhhcCcCcccCCCCCcCCCC
Confidence            566777788777788888888888888888887654

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.6e-11  Score=73.58  Aligned_cols=35  Identities=34%  Similarity=0.727  Sum_probs=28.1

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME  151 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~  151 (227)
                      +|++++|+|.+|+||+..++|||+.||.|||||..
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             ccCCCceEcCCCCeEChhhcCCCCCCCCCCCcCCC
Confidence            36677888888888888888888888888888854

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.00  E-value=4.6e-11  Score=73.91  Aligned_cols=36  Identities=44%  Similarity=0.944  Sum_probs=33.4

Q ss_pred             CCCCCceecC---CceecCCCccCCcccCCCCCcccCCC
Q psy17376         79 GCLPNEFRCS---NSCIDHLKRCDRTQDCELGEDEIDCK  114 (227)
Q Consensus        79 ~C~~~~f~C~---~~Ci~~~~~CDG~~DC~dgsDE~~C~  114 (227)
                      +|.+++|+|.   ++||+..|+|||+.||.|+|||.+|.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C~   40 (41)
T d2gtlo2           2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT   40 (41)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred             CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccCc
Confidence            5889999995   68999999999999999999999985

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9.1e-11  Score=73.96  Aligned_cols=36  Identities=36%  Similarity=0.664  Sum_probs=23.9

Q ss_pred             CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC  152 (227)
Q Consensus       117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C  152 (227)
                      .|+.++|+|.+|+||+.+++|||+.||.|||||..+
T Consensus         5 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             BTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCCCCeEcCCCCeEChhhhCcCcCcCCCCCCCCcC
Confidence            455666777666677777777777777777776543

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4e-11  Score=75.34  Aligned_cols=37  Identities=38%  Similarity=0.805  Sum_probs=33.3

Q ss_pred             ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376         25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC   65 (227)
Q Consensus        25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   65 (227)
                      .+|.  .++|+|.+|+||+..++|||+.||.|+|||  .+|
T Consensus         3 ~~C~--~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE--~~c   39 (44)
T d1j8ea_           3 HSCS--STQFKCNSGRCIPEHWTCDGDNDCGDYSDE--THA   39 (44)
T ss_dssp             SSSC--TTEEECTTSCEEEGGGTTSSSCCSSSSGGG--SHH
T ss_pred             ccCC--CCcEEcCCCCEEChhhcCcCcccCCCCCcC--CCC
Confidence            4565  789999999999999999999999999999  554

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.2e-11  Score=72.88  Aligned_cols=35  Identities=34%  Similarity=0.755  Sum_probs=31.7

Q ss_pred             CCCceecCCC--ceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         30 SRPIFQCNQT--QCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        30 ~~~~F~C~~g--~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      .+++|+|.+|  +|||..|+|||+.||.|||||  .+|.
T Consensus         2 ~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE--~~C~   38 (39)
T d1v9u5_           2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE--ENCG   38 (39)
T ss_dssp             CTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGG--SSCC
T ss_pred             CCCceECCCCCCCeeechhcCcCcccCCCCchh--ccCC
Confidence            3789999874  599999999999999999999  8885

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.98  E-value=7.2e-11  Score=73.41  Aligned_cols=24  Identities=38%  Similarity=0.785  Sum_probs=13.0

Q ss_pred             ceecCCCccCCcccCCCCCcccCC
Q psy17376         90 SCIDHLKRCDRTQDCELGEDEIDC  113 (227)
Q Consensus        90 ~Ci~~~~~CDG~~DC~dgsDE~~C  113 (227)
                      +|||.+|+|||+.||.|||||.+|
T Consensus        18 ~CIp~~~~CDg~~DC~DgsDE~~C   41 (42)
T d1k7ba_          18 ECYPQDWLCDGHPDCDDGRDEWGC   41 (42)
T ss_dssp             CCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             cEechhhcCCCcCcCcCChhhhcc
Confidence            455555555555555555555544

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.98  E-value=1.4e-10  Score=71.61  Aligned_cols=33  Identities=33%  Similarity=0.812  Sum_probs=29.7

Q ss_pred             CCCceecCC--CceEeCCCccCCCCCCCCCCCCCC
Q psy17376         30 SRPIFQCNQ--TQCILETSLCNGIPECGNGRDESV   62 (227)
Q Consensus        30 ~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~   62 (227)
                      ++++|+|.+  |+|||..|+|||+.||.|||||.+
T Consensus         3 ~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           3 EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             CTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            379999963  799999999999999999999954

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.96  E-value=5.7e-11  Score=73.84  Aligned_cols=32  Identities=28%  Similarity=0.717  Sum_probs=29.3

Q ss_pred             CCceecCC--CceEeCCCccCCCCCCCCCCCCCC
Q psy17376         31 RPIFQCNQ--TQCILETSLCNGIPECGNGRDESV   62 (227)
Q Consensus        31 ~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~   62 (227)
                      .++|+|.+  ++|||..|+|||+.||.|||||.+
T Consensus         5 ~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d2gtlm2           5 EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP   38 (42)
T ss_dssp             TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred             CCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence            79999975  689999999999999999999943

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.91  E-value=1.9e-10  Score=71.44  Aligned_cols=34  Identities=41%  Similarity=1.004  Sum_probs=30.5

Q ss_pred             CCceecCC-----CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376         31 RPIFQCNQ-----TQCILETSLCNGIPECGNGRDESVAMCG   66 (227)
Q Consensus        31 ~~~F~C~~-----g~CI~~~~~CDg~~DC~DgSDE~~~~C~   66 (227)
                      +++|+|.+     |+|||..|+|||+.||.|||||  .+|.
T Consensus         4 ~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE--~~CG   42 (42)
T d1k7ba_           4 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGCG   42 (42)
T ss_dssp             TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTT--GGGC
T ss_pred             cCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhh--hccC
Confidence            78999975     4799999999999999999999  7773

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.85  E-value=8.2e-10  Score=68.11  Aligned_cols=34  Identities=29%  Similarity=0.613  Sum_probs=27.0

Q ss_pred             cCCCceecC--CCceecCCcccCCCCCCCCCCCCCC
Q psy17376        118 CPVSHYKCS--NDFCIPLDKVCNFIDDCGDNSDEME  151 (227)
Q Consensus       118 C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgsDE~~  151 (227)
                      |++++|+|.  +|+||+..++|||+.||.|||||..
T Consensus         2 C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            567788885  4678888888888888888888854

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.2e-09  Score=68.36  Aligned_cols=34  Identities=50%  Similarity=0.992  Sum_probs=30.5

Q ss_pred             CcC-CCceecCCCceecCCcccCCCCCCCCCCCCC
Q psy17376        117 MCP-VSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM  150 (227)
Q Consensus       117 ~C~-~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~  150 (227)
                      .|. +.+|+|.+|+||+..++|||+.||.|+|||.
T Consensus         5 ~C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~   39 (44)
T d1xfea2           5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP   39 (44)
T ss_dssp             SCCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSC
T ss_pred             cCCCCCeEECCCCCeEchhhcCCCCCCCCCCCccC
Confidence            454 5799999999999999999999999999995

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.82  E-value=9.1e-10  Score=68.25  Aligned_cols=34  Identities=32%  Similarity=0.517  Sum_probs=29.0

Q ss_pred             CcCCCceecCC--CceecCCcccCCCCCCCCCCCCC
Q psy17376        117 MCPVSHYKCSN--DFCIPLDKVCNFIDDCGDNSDEM  150 (227)
Q Consensus       117 ~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~  150 (227)
                      .|++++|+|.+  ++||+.+++|||+.||.|||||.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCC
Confidence            36788999964  67999999999999999999994