Psyllid ID: psy17384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MLYDNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILEHHKSYV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHccccccHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHEHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLYDNTITQIRLDisrtfphlclfqnegpyynTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLfkynlpklhrhfhscgltpdlyLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKfmgdisnpfeiktgvrqgdglspllFNCVLEKVIREWRIISKEGSkfltklpdnmdadKLFKSIAQMSVSIYRKSYETILEHHKSYV
Flexible Loop (DISEMBL)
MLYDNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISkegskfltklpdnmDADKLFKSIAQMSVSIYRKSYETILEHHKSYV
Low Complexity Region (SEG)
MLYDNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILEHHKSYV
Disordered region (IsUnstruct)
***DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETIL*******
Disordered Region (DISOPRED)
***DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQAT*********************************************************************************ETILEHH****
Disordered Region (DISEMBL)
MLYDNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILEHHKSYV
Disordered Region (DISPRO)
MLYDNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILEHHKSYV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLYDNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILEHHKSYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q9P2M4	693	TBC1 domain family member	yes	N/A	0.555	0.236	0.509	7e-47
A6H7I8	692	TBC1 domain family member	yes	N/A	0.555	0.236	0.490	6e-46
Q5CD77	694	TBC1 domain family member	yes	N/A	0.555	0.236	0.503	7e-46
Q8CGA2	694	TBC1 domain family member	yes	N/A	0.664	0.282	0.443	1e-45
Q0IHY4	684	TBC1 domain family member	no	N/A	0.555	0.239	0.503	7e-45
Q6A039	696	TBC1 domain family member	no	N/A	0.555	0.235	0.496	2e-44
O60347	775	TBC1 domain family member	no	N/A	0.555	0.211	0.496	3e-44
O96904	438	Drainin OS=Dictyostelium	no	N/A	0.515	0.347	0.405	7e-30
Q9VYY9	807	TBC1 domain family member	yes	N/A	0.525	0.192	0.254	2e-15
Q09844	472	TBC domain-containing pro	yes	N/A	0.484	0.302	0.310	1e-14

>sp|Q9P2M4|TBC14_HUMAN TBC1 domain family member 14 OS=Homo sapiens GN=TBC1D14 PE=1 SV=3

 Score =  187 bits (475), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 115/165 (69%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct: 466 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 524

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct: 525 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 584

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct: 585 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 629

May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)

>sp|A6H7I8|TBC14_BOVIN TBC1 domain family member 14 OS=Bos taurus GN=TBC1D14 PE=2 SV=2

 Score =  184 bits (467), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 113/165 (68%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct: 465 IKLDISRTFPSLCIFQQGGPYHDMLHSVLGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 523

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct: 524 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 583

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C++WD+  RDGE F+FR AL   + +  +
Sbjct: 584 DWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTALGLLRLFQDV 628

May act as a GTPase-activating protein for Rab family protein(s).

Bos taurus (taxid: 9913)

>sp|Q5CD77|TBC14_RAT TBC1 domain family member 14 OS=Rattus norvegicus GN=Tbc1d14 PE=2 SV=2

 Score =  184 bits (467), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 114/165 (69%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct: 467 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 525

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LT D+YL+
Sbjct: 526 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTADIYLI 585

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct: 586 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 630

May act as a GTPase-activating protein for Rab family protein(s).

Rattus norvegicus (taxid: 10116)

>sp|Q8CGA2|TBC14_MOUSE TBC1 domain family member 14 OS=Mus musculus GN=Tbc1d14 PE=2 SV=2

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 9/205 (4%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct: 467 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 525

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LT D+YL+
Sbjct: 526 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTADIYLI 585

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI--------DRETLFN 181
           DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I          + L  
Sbjct: 586 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTRMDFIHSAQFLTR 645

Query: 182 ILEEYGADAKTVAIIKESLQATKSK 206
           + E+  AD    AI    +Q+   K
Sbjct: 646 LPEDLPADEVFAAISTVQMQSRNKK 670

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q0IHY4|TBC12_XENTR TBC1 domain family member 12 OS=Xenopus tropicalis GN=tbc1d12 PE=2 SV=1

 Score =  181 bits (458), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 114/165 (69%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP L +FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+  A 
Sbjct: 457 IKLDISRTFPSLYIFQKGGPYHDLLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEA- 515

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  MM  Y+A +   F+ NLPKL  HF++  LTPDLYL+
Sbjct: 516 DAFIAFANLLNKPCQLAFFRVDHSMMLKYFAAFEVFFEENLPKLFFHFNAYSLTPDLYLI 575

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C++WD+  RDGE F+FR AL   + Y+ I
Sbjct: 576 DWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTALGILRLYEDI 620

May act as a GTPase-activating protein for Rab family protein(s).

Xenopus tropicalis (taxid: 8364)

>sp|Q6A039|TBC12_MOUSE TBC1 domain family member 12 OS=Mus musculus GN=Tbc1d12 PE=1 SV=2

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 112/165 (67%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP L +FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+  A 
Sbjct: 468 IKLDISRTFPSLYIFQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEA- 526

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  MM  Y+AT+   F+ NL KL  HF S  LTPD+YL+
Sbjct: 527 DAFIAFANLLNKPCQLAFFRVDHSMMLKYFATFEVFFEENLSKLFLHFKSYNLTPDIYLI 586

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C++WD+  RDGE F+FR  L   + Y+ I
Sbjct: 587 DWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDI 631

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|O60347|TBC12_HUMAN TBC1 domain family member 12 OS=Homo sapiens GN=TBC1D12 PE=1 SV=3

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 112/165 (67%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP L +FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+  A 
Sbjct: 547 IKLDISRTFPSLYIFQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEA- 605

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  MM  Y+AT+   F+ NL KL  HF S  LTPD+YL+
Sbjct: 606 DAFIAFANLLNKPCQLAFFRVDHSMMLKYFATFEVFFEENLSKLFLHFKSYSLTPDIYLI 665

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C++WD+  RDGE F+FR  L   + Y+ I
Sbjct: 666 DWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDI 710

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|O96904|TBC12_DICDI Drainin OS=Dictyostelium discoideum GN=phgA PE=1 SV=1

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 13  DISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAF 72
           DI  TFP L +FQ  GP ++ L  +L +Y+ Y   I YV GM+++ A+F+LN+    +AF
Sbjct: 232 DIQDTFPSLMIFQKGGPLHSDLIDVLGAYICYRPDIGYVPGMTFLAAMFLLNMEKC-DAF 290

Query: 73  VCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWI 132
           +   N +N   F  F+  +   +  Y A  +   +   P LH+HF   G++   YL+DWI
Sbjct: 291 LSLSNHINSVCFLPFFRQDQSGIPKYLAAMDSTVEALTPPLHKHFKEIGISAKNYLVDWI 350

Query: 133 YTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
            TLFSKA+ LD+  +IWDLV  +GE+FI+R AL
Sbjct: 351 TTLFSKALPLDVATRIWDLVFIEGEIFIYRTAL 383

May act as a GTPase-activating protein for Rab family protein(s) (By similarity). Required for osmotic regulation by the contractile vacuole in hypo-osmotic environments. Essential for periodic fusion of the contractile vacuole with the plasma membrane and consequent expulsion of water from the cell body.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VYY9|Y1727_DROME TBC1 domain family member CG11727 OS=Drosophila melanogaster GN=CG11727 PE=1 SV=3

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 10  IRLDISRTFPHLCLF-QNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTA 68
           IR DI+RT+P +  F + +GP    L  ++ +Y  ++  + Y QG  +I  L ++ +   
Sbjct: 154 IRRDIARTYPEVEFFKEKDGPGQEALFNVIKAYSLHDREVGYCQGSGFIVGLLLMQM-PE 212

Query: 69  YEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYL 128
            EAF      + +      +  ++  +        +L +  +P +H HF   G    +Y 
Sbjct: 213 EEAFAVLVQIMQQHRMRHMFKPSMSELGLCMYQLENLVQEQIPDMHIHFQQQGFQTTMYA 272

Query: 129 LDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
             W  TL++  + ++L C+I D+ + +G  FIF+ AL
Sbjct: 273 SSWFLTLYTTTLNVNLSCRIMDVFLSEGMEFIFKVAL 309

Functions as a GTPase-activating protein (GAP).

Drosophila melanogaster (taxid: 7227)

>sp|Q09844|YAE3_SCHPO TBC domain-containing protein C23D3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23D3.03c PE=4 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 7   ITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS 66
           +  + LD+  T PH  LF  EGP    L  +L +Y  Y    SY+ G S+I AL +LN++
Sbjct: 269 VCALELDLQSTMPHYSLFHTEGPLRRDLIGLLRAYSYYRFDTSYIPGTSFIGALLLLNMN 328

Query: 67  TAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFH-SCGLTPD 125
               AF C  N L+K      Y+ +   ++++Y T+ D  K N P+L  H      L PD
Sbjct: 329 LT-SAFNCLANLLDKPFLQAVYTQDTSSLKSFYQTFLDTLKKNEPELATHLLIKLELVPD 387

Query: 126 LYLLDWIYTLFSKAMGLDLVCKIWD 150
            ++   +  LF   +  ++  +I D
Sbjct: 388 DFVYPLLRKLFIPMVSPEIASRILD 412

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
91078436	535	PREDICTED: similar to TBC1 domain family	0.545	0.300	0.567	5e-52
270003867	631	hypothetical protein TcasGA2_TC003153 [T	0.525	0.245	0.589	5e-52
242020612	718	conserved hypothetical protein [Pediculu	0.545	0.224	0.555	9e-51
405965006	789	TBC1 domain family member 14 [Crassostre	0.569	0.212	0.479	1e-46
427795893	483	hypothetical protein, partial [Rhipiceph	0.555	0.339	0.496	6e-46
427797311	451	hypothetical protein, partial [Rhipiceph	0.555	0.363	0.496	7e-46
350587322	694	PREDICTED: TBC1 domain family member 14	0.555	0.236	0.515	8e-46
410957978	693	PREDICTED: TBC1 domain family member 14	0.555	0.236	0.515	9e-46
198430387	593	PREDICTED: similar to TBC1 domain family	0.545	0.271	0.493	1e-45
449270781	680	TBC1 domain family member 14 [Columba li	0.555	0.241	0.509	1e-45

>gi|91078436|ref|XP_966533.1| PREDICTED: similar to TBC1 domain family member 12 [Tribolium castaneum]

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 122/162 (75%), Gaps = 1/162 (0%)

Query: 4   DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
           ++++  I+LDISRTFPHLC+FQ  GPY + LH +LA+YV Y   + YVQGMSYI A+ IL
Sbjct: 329 ESSMDVIQLDISRTFPHLCIFQEGGPYSDILHSLLAAYVCYRPDVGYVQGMSYIAAILIL 388

Query: 64  NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT 123
           N+   ++AF+CF N LN+ +    ++LN   M+AYY+ YN++F YNLPKLH HF    LT
Sbjct: 389 NME-PFDAFICFANLLNQPLHLSAFTLNQEQMEAYYSAYNEVFSYNLPKLHAHFKEAKLT 447

Query: 124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
           PDLYLLDWIYT+F+KAM LD+ C++WD+ +RDG  FIFR AL
Sbjct: 448 PDLYLLDWIYTIFAKAMPLDVACRVWDIFLRDGFEFIFRTAL 489

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003867|gb|EFA00315.1| hypothetical protein TcasGA2_TC003153 [Tribolium castaneum]

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 118/156 (75%), Gaps = 1/156 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFPHLC+FQ  GPY + LH +LA+YV Y   + YVQGMSYI A+ ILN+   +
Sbjct: 407 IQLDISRTFPHLCIFQEGGPYSDILHSLLAAYVCYRPDVGYVQGMSYIAAILILNME-PF 465

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+CF N LN+ +    ++LN   M+AYY+ YN++F YNLPKLH HF    LTPDLYLL
Sbjct: 466 DAFICFANLLNQPLHLSAFTLNQEQMEAYYSAYNEVFSYNLPKLHAHFKEAKLTPDLYLL 525

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
           DWIYT+F+KAM LD+ C++WD+ +RDG  FIFR AL
Sbjct: 526 DWIYTIFAKAMPLDVACRVWDIFLRDGFEFIFRTAL 561

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020612|ref|XP_002430746.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515943|gb|EEB18008.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 4   DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
           ++++  I+LDISRTFP LC+FQ  GPYY+ LH +L +YV Y   + YVQGMS+I A+ IL
Sbjct: 492 ESSVELIQLDISRTFPQLCIFQEGGPYYDILHCLLGAYVCYRPDVGYVQGMSFIAAILIL 551

Query: 64  NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT 123
           N+  A +AFVCF N LN+     F++LN  +M AYY TYN   K NLPKL +HF    LT
Sbjct: 552 NLEPA-DAFVCFANLLNRPCHMAFFTLNQTLMNAYYETYNSFLKENLPKLSQHFEESCLT 610

Query: 124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
           PDLYLLDW+Y++F+K+M LD+ C+IWD+ +RDGE F+FR AL
Sbjct: 611 PDLYLLDWVYSVFAKSMPLDVACRIWDVFLRDGEEFLFRTAL 652

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405965006|gb|EKC30437.1| TBC1 domain family member 14 [Crassostrea gigas]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 118/169 (69%), Gaps = 1/169 (0%)

Query: 6   TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
           ++  I+LDISRTFP LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ +LN+
Sbjct: 565 SVELIKLDISRTFPQLCIFQKGGPYHDLLHSLLGAYACYRPDVGYVQGMSFIAAVLLLNM 624

Query: 66  STAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPD 125
             A +AF+CF N LN+     F+ ++  MM+ Y+ TY + FK N+P L RHF    +TPD
Sbjct: 625 DVA-DAFICFANLLNRPCQVAFFRIDEAMMKFYFQTYEEFFKENMPTLFRHFSKTNVTPD 683

Query: 126 LYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           +YL+DWI++L+SK++ LD+ C++WD+  RDGE F+FR AL   K Y+ I
Sbjct: 684 IYLIDWIFSLYSKSLPLDIACRVWDIFCRDGEEFLFRTALGILKLYEDI 732

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|427795893|gb|JAA63398.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 116/165 (70%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           IRLD+SRTFP L +FQ  GPY++ LH +L +YV Y   I YVQGMS++ A+ +LN+  A 
Sbjct: 267 IRLDVSRTFPQLGIFQESGPYFDVLHCILGAYVVYRPDIGYVQGMSFLAAMLLLNLEVA- 325

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+CF N LN+     F+ ++   M AYY  Y+D F+ NLPKL  HF    LT DLYL+
Sbjct: 326 DAFICFANLLNRPCQLAFFRVDQPQMNAYYTLYDDFFRENLPKLFAHFKKHNLTSDLYLV 385

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWIYTL+S+++ LD+ C++WD+ +RDGE F+FR+AL   + Y+ +
Sbjct: 386 DWIYTLYSRSLPLDVACRVWDVFLRDGEEFLFRSALGILRLYEDV 430

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427797311|gb|JAA64107.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 116/165 (70%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           IRLD+SRTFP L +FQ  GPY++ LH +L +YV Y   I YVQGMS++ A+ +LN+  A 
Sbjct: 235 IRLDVSRTFPQLGIFQESGPYFDVLHCILGAYVVYRPDIGYVQGMSFLAAMLLLNLEVA- 293

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+CF N LN+     F+ ++   M AYY  Y+D F+ NLPKL  HF    LT DLYL+
Sbjct: 294 DAFICFANLLNRPCQLAFFRVDQPQMNAYYTLYDDFFRENLPKLFAHFKKHNLTSDLYLV 353

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWIYTL+S+++ LD+ C++WD+ +RDGE F+FR+AL   + Y+ +
Sbjct: 354 DWIYTLYSRSLPLDVACRVWDVFLRDGEEFLFRSALGILRLYEDV 398

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350587322|ref|XP_003356897.2| PREDICTED: TBC1 domain family member 14 [Sus scrofa]

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 116/165 (70%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP+LC+FQ  GPY++TLH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct: 467 IKLDISRTFPNLCIFQQGGPYHDTLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 525

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct: 526 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 585

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct: 586 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 630

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410957978|ref|XP_003985600.1| PREDICTED: TBC1 domain family member 14 [Felis catus]

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 116/165 (70%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP+LC+FQ  GPY++TLH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct: 466 IKLDISRTFPNLCIFQQGGPYHDTLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 524

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct: 525 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 584

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct: 585 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 629

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198430387|ref|XP_002127705.1| PREDICTED: similar to TBC1 domain family, member 14 [Ciona intestinalis]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 115/162 (70%), Gaps = 1/162 (0%)

Query: 4   DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
           ++T+  IRLDISRTFPHLC+FQ  GPY++ LH +L +Y  Y   + YVQGMS++ A+ +L
Sbjct: 367 ESTVELIRLDISRTFPHLCIFQKGGPYHDVLHDILGAYACYRPDVGYVQGMSFVAAMLLL 426

Query: 64  NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT 123
           N+  AY AF+ F N LNK     F+ LN  +M+ Y+A++   F+ NLP+L   F    LT
Sbjct: 427 NMEPAY-AFITFSNLLNKPCQLAFFRLNEELMKIYFASFEVFFEENLPRLFARFKHNNLT 485

Query: 124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
           PD+YL+DWI+T+FSKA+ LD+ C++WD+  RDGE F+F+ A+
Sbjct: 486 PDIYLIDWIFTMFSKALSLDMACRVWDMFCRDGEEFLFKTAI 527

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449270781|gb|EMC81432.1| TBC1 domain family member 14 [Columba livia]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 116/165 (70%), Gaps = 1/165 (0%)

Query: 10  IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
           I+LDISRTFP+LC+FQ  GPY++TLH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct: 453 IKLDISRTFPNLCIFQQGGPYHDTLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 511

Query: 70  EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
           +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct: 512 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 571

Query: 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           DWI+TL+SK++ LDL C++WD+  RDGE F+FR AL   K ++ I
Sbjct: 572 DWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTALGILKLFEDI 616

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
UNIPROTKB|E1C2A7	413	TBC1D14 "Uncharacterized prote	0.555	0.397	0.509	4.7e-50
UNIPROTKB|F1N9A8	669	TBC1D14 "Uncharacterized prote	0.555	0.245	0.509	4.7e-50
UNIPROTKB|B9A071	465	TBC1D14 "TBC1 domain family me	0.555	0.352	0.509	7.7e-50
UNIPROTKB|I3LE86	694	TBC1D14 "Uncharacterized prote	0.555	0.236	0.515	1.3e-49
UNIPROTKB|Q9P2M4	693	TBC1D14 "TBC1 domain family me	0.555	0.236	0.509	2.6e-49
UNIPROTKB|F5GXK4	340	TBC1D14 "TBC1 domain family me	0.494	0.429	0.482	7.1e-49
UNIPROTKB|F1P6H8	693	TBC1D14 "Uncharacterized prote	0.555	0.236	0.509	1.5e-48
ZFIN|ZDB-GENE-030131-6136	711	si:dkey-120m5.1 "si:dkey-120m5	0.555	0.230	0.490	2.3e-48
UNIPROTKB|F1LV84	413	Tbc1d14 "TBC1 domain family me	0.555	0.397	0.503	2.9e-48
UNIPROTKB|A6H7I8	692	TBC1D14 "TBC1 domain family me	0.555	0.236	0.490	6.7e-48

UNIPROTKB|E1C2A7 TBC1D14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 470 (170.5 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 84/165 (50%), Positives = 116/165 (70%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP+LC+FQ  GPY++TLH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   186 IKLDISRTFPNLCIFQQGGPYHDTLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 244

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct:   245 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 304

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LDL C++WD+  RDGE F+FR AL   K ++ I
Sbjct:   305 DWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTALGILKLFEDI 349

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1N9A8 TBC1D14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 470 (170.5 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 84/165 (50%), Positives = 116/165 (70%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP+LC+FQ  GPY++TLH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   442 IKLDISRTFPNLCIFQQGGPYHDTLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 500

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct:   501 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 560

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LDL C++WD+  RDGE F+FR AL   K ++ I
Sbjct:   561 DWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTALGILKLFEDI 605

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0010507 "negative regulation of autophagy" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:2000785 "regulation of autophagic vacuole assembly" evidence=IEA

UNIPROTKB|B9A071 TBC1D14 "TBC1 domain family member 14" [Homo sapiens (taxid:9606)]

 Score = 465 (168.7 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 84/165 (50%), Positives = 115/165 (69%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   238 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 296

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct:   297 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 356

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct:   357 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 401

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|I3LE86 TBC1D14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 471 (170.9 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 85/165 (51%), Positives = 116/165 (70%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP+LC+FQ  GPY++TLH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   467 IKLDISRTFPNLCIFQQGGPYHDTLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 525

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct:   526 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 585

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct:   586 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 630

GO:2000785 "regulation of autophagic vacuole assembly" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0010507 "negative regulation of autophagy" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|Q9P2M4 TBC1D14 "TBC1 domain family member 14" [Homo sapiens (taxid:9606)]

 Score = 465 (168.7 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 84/165 (50%), Positives = 115/165 (69%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   466 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 524

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct:   525 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 584

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct:   585 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 629

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:2000785 "regulation of autophagic vacuole assembly" evidence=IMP

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0010507 "negative regulation of autophagy" evidence=IMP

UNIPROTKB|F5GXK4 TBC1D14 "TBC1 domain family member 14" [Homo sapiens (taxid:9606)]

 Score = 393 (143.4 bits), Expect = 7.1e-49, Sum P(3) = 7.1e-49
 Identities = 71/147 (48%), Positives = 99/147 (67%)

Query:    28 GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVF 87
             GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA +AF+ F N LNK     F
Sbjct:   131 GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA-DAFIAFSNLLNKPCQMAF 189

Query:    88 YSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCK 147
             + ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+DWI+TL+SK++ LDL C+
Sbjct:   190 FRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACR 249

Query:   148 IWDLVMRDGEVFIFRAALDFKKAYDSI 174
             IWD+  RDGE F+FR AL   K ++ I
Sbjct:   250 IWDVFCRDGEEFLFRTALGILKLFEDI 276

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1P6H8 TBC1D14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 464 (168.4 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
 Identities = 84/165 (50%), Positives = 115/165 (69%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   466 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 524

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct:   525 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 584

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct:   585 DWIFTLYSKSLPLDLACRIWDVFCRDGEGFLFRTALGILKLFEDI 629

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-030131-6136 si:dkey-120m5.1 "si:dkey-120m5.1" [Danio rerio (taxid:7955)]

 Score = 459 (166.6 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
 Identities = 81/165 (49%), Positives = 115/165 (69%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   487 IKLDISRTFPNLCIFQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 545

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     FY ++  +M  Y+A +   F+ NLPKL  HF +  L+ D+YL+
Sbjct:   546 DAFIAFANLLNKPCQMAFYRVDHSLMLTYFAAFEVFFEENLPKLFAHFKNNNLSSDIYLI 605

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LD+ C++WD+  RDGE F+FR AL   + Y+ I
Sbjct:   606 DWIFTLYSKSLPLDIACRVWDVFCRDGEEFLFRTALGILRLYEDI 650

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

UNIPROTKB|F1LV84 Tbc1d14 "TBC1 domain family member 14" [Rattus norvegicus (taxid:10116)]

 Score = 457 (165.9 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 83/165 (50%), Positives = 114/165 (69%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   186 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 244

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LT D+YL+
Sbjct:   245 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTADIYLI 304

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct:   305 DWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 349

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|A6H7I8 TBC1D14 "TBC1 domain family member 14" [Bos taurus (taxid:9913)]

 Score = 456 (165.6 bits), Expect = 6.7e-48, Sum P(2) = 6.7e-48
 Identities = 81/165 (49%), Positives = 113/165 (68%)

Query:    10 IRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAY 69
             I+LDISRTFP LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+ TA 
Sbjct:   465 IKLDISRTFPSLCIFQQGGPYHDMLHSVLGAYTCYRPDVGYVQGMSFIAAVLILNLDTA- 523

Query:    70 EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129
             +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD+YL+
Sbjct:   524 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 583

Query:   130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             DWI+TL+SK++ LDL C++WD+  RDGE F+FR AL   + +  +
Sbjct:   584 DWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTALGLLRLFQDV 628

GO:0005794 "Golgi apparatus" evidence=IEA

GO:2000785 "regulation of autophagic vacuole assembly" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0010507 "negative regulation of autophagy" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5CD77	TBC14_RAT	No assigned EC number	0.5030	0.5559	0.2363	yes	N/A
Q9P2M4	TBC14_HUMAN	No assigned EC number	0.5090	0.5559	0.2366	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	295
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	1e-37
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	4e-37
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	4e-25
pfam00078	194	pfam00078, RVT_1, Reverse transcriptase (RNA-depen	2e-08
cd01650	220	cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long term	4e-07
cd01651	226	cd01651, RT_G2_intron, RT_G2_intron: Reverse trans	7e-05

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score =  132 bits (335), Expect = 1e-37
 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%)

Query: 5   NTITQIRLDISRTFPHLCLFQ-NEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
           + + QI  D+ RTFP    FQ  EGP   +L  +L +Y  YN  + Y QGM+++ A  +L
Sbjct: 45  SIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLL 104

Query: 64  NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT 123
            +    +AF C    + +     FY  ++  +Q      + L K   P L++H    G+T
Sbjct: 105 VMEDEEDAFWCLVKLMER-YGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGIT 163

Query: 124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
           P LY L W  TLF++ + L++V +IWD++  +G  F+FR AL
Sbjct: 164 PSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVAL 205

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score =  130 bits (329), Expect = 4e-37
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 2/163 (1%)

Query: 3   YDNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFI 62
                 QI  D+ RTFPH   F+N G     L  +L +Y  YN  + Y QGM++I A  +
Sbjct: 35  DSPDEEQIEKDVPRTFPHHFFFKN-GEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLL 93

Query: 63  LNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGL 122
           L +    EAF CF + L       F+  +   +Q     + +L K + P+L++H    GL
Sbjct: 94  LVVLDEEEAFWCFVSLLEYL-LRDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGL 152

Query: 123 TPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
            P L+   W  TLF++ + L+ V ++WDL +  G+ F+FR AL
Sbjct: 153 DPSLFASKWFLTLFARELPLETVLRLWDLFLEGGKFFLFRVAL 195

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score =  104 bits (260), Expect = 4e-25
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 1/162 (0%)

Query: 5   NTITQIRLDISRTFPHLCLFQNEGPY-YNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
             I+QI  D+SRTFP   LFQ E       L  +L +Y  YN  + YVQGM+++ A  +L
Sbjct: 255 EIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLL 314

Query: 64  NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT 123
            + +  +AF C    L       ++  N+  +       +DL +   P+L+ H    G+ 
Sbjct: 315 VLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVV 374

Query: 124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
             ++   W  TLF +   L+   +IWD +  +G   +F+ AL
Sbjct: 375 LLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLAL 416

Length = 496

>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase)

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 165 LDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVR 224
           LD KKA+DSI  + L   L  +G   + +     S+    +                G+ 
Sbjct: 58  LDLKKAFDSIPHDPLDRPLTAFGLPQRFIRWRTFSVLVNGN--------PGGRYEWRGLP 109

Query: 225 QGDGLSPLLFNCVLEKVIREWR 246
           QG  LSPLLFN  + +++R  R
Sbjct: 110 QGSVLSPLLFNLFMNELLRPLR 131

A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Length = 194

>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT)

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 38/88 (43%)

Query: 163 AALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTG 222
             LDF+KA+DS+D E L   L                                      G
Sbjct: 85  VFLDFEKAFDSVDHEFLLKAL--------------------------------------G 106

Query: 223 VRQGDGLSPLLFNCVLEKVIREWRIISK 250
           VRQGD LSPLLFN  L+ ++R      +
Sbjct: 107 VRQGDPLSPLLFNLALDDLLRLLNKEEE 134

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities. Length = 220

>gnl|CDD|238828 cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 166 DFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQ 225
           D K  +D+ID + L  IL+    D + + +I++ L+A   +           E + G  Q
Sbjct: 76  DIKGFFDNIDHDLLLKILKRRIGDKRVLRLIRKWLKAGVLEDGK------LVETEKGTPQ 129

Query: 226 GDGLSPLLFNCVLEKVIREW 245
           G  +SPLL N  L ++ +  
Sbjct: 130 GGVISPLLANIYLHELDKFV 149

RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs). Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
KOG2223|consensus	586		100.0
KOG2058|consensus	436		100.0
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	100.0
COG5210	496	GTPase-activating protein [General function predic	99.97
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	99.97
KOG2222|consensus	848		99.95
KOG4567|consensus	370		99.95
KOG1092|consensus	484		99.93
KOG4436|consensus	948		99.91
KOG4347|consensus	671		99.91
KOG1093|consensus	725		99.9
KOG1102|consensus	397		99.87
KOG2224|consensus	781		99.82
KOG1091|consensus	625		99.81
KOG2221|consensus	267		99.78
KOG2197|consensus	488		99.76
KOG2595|consensus	395		99.74
KOG4436|consensus	948		99.49
KOG3636|consensus	669		99.15
cd01651	226	RT_G2_intron RT_G2_intron: Reverse transcriptases	99.13
cd03487	214	RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr	98.98
KOG2801|consensus	559		98.88
PF00078	214	RVT_1: Reverse transcriptase (RNA-dependent DNA po	98.73
cd01646	158	RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip	98.69
cd01709	346	RT_like_1 RT_like_1: A subfamily of reverse transc	98.61
cd01648	119	TERT TERT: Telomerase reverse transcriptase (TERT)	98.57
cd01650	220	RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea	98.53
KOG1005|consensus	888		96.96
KOG1648|consensus	813		96.64
KOG4768|consensus	796		96.28
cd00304	98	RT_like RT_like: Reverse transcriptase (RT, RNA-de	95.09
PF14961	1296	BROMI: Broad-minded protein	93.82
COG3344	328	Retron-type reverse transcriptase [DNA replication	80.17

>KOG2223|consensus

Probab=100.00  E-value=1.4e-39  Score=282.09  Aligned_cols=219  Identities=41%  Similarity=0.811  Sum_probs=203.8

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      +..+.+|+.|+.||||+..+|+.++++++.|..||.||+.|+||+||+|||.+|+|+|++.++ +.+||.+|.+++++.+
T Consensus       353 e~sv~~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd-~~~AFiafANLLdkp~  431 (586)
T KOG2223|consen  353 EASVELIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD-LADAFIAFANLLDKPC  431 (586)
T ss_pred             hcchhheeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC-cHHHHHHHHHHhccHH
Confidence            567889999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA  163 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~  163 (295)
                      ...+|..+.+.+..++..|+..+++..|+|+.||.+.++.|++|+++|+.++|++.+|++.++||||.|+.+|+.++++.
T Consensus       432 q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~  511 (586)
T KOG2223|consen  432 QQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRT  511 (586)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHHHH
Q psy17384        164 ALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIR  243 (295)
Q Consensus       164 ~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l~~  243 (295)
                      +++++|.|+.                                                          .|-         
T Consensus       512 ~lgIlklyep----------------------------------------------------------kLl---------  524 (586)
T KOG2223|consen  512 ALGILKLYEP----------------------------------------------------------KLL---------  524 (586)
T ss_pred             HHHHHHHccc----------------------------------------------------------hHh---------
Confidence            9999999988                                                          110         


Q ss_pred             HHHhhhhcccccccCCCCCCCHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q psy17384        244 EWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILEHHK  292 (295)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (295)
                        ...+++...++.++|.++.++.+|..||.+.+---.|++.|+++...
T Consensus       525 --~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~kkwsqvf~~i~  571 (586)
T KOG2223|consen  525 --VMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRSKKWSQVFQEID  571 (586)
T ss_pred             --hhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhchhHHHHHHHHH
Confidence              11133445678999999999999999999999888888999988764

>KOG2058|consensus

Probab=100.00  E-value=6.7e-38  Score=279.55  Aligned_cols=168  Identities=30%  Similarity=0.523  Sum_probs=161.2

Q ss_pred             hhHHHHHHhhhhcCCCC-cCCCCCC-ccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q psy17384          5 NTITQIRLDISRTFPHL-CLFQNEG-PYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKS   82 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~-~~f~~~~-~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~   82 (295)
                      .+.+||+.|+.||||++ +.|...+ .++++|+|||.||+.+||+||||||||++||++|+++++|++|||+++.+++++
T Consensus       195 ~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~  274 (436)
T KOG2058|consen  195 PVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENY  274 (436)
T ss_pred             hHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence            48899999999999999 7888764 358999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHh
Q psy17384         83 VFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFR  162 (295)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~  162 (295)
                      .+. ||+++..+.+....+++.+++..+|+|+.|+...++...+++.+||+++|+..+|.+.++||||.++.+|.+++++
T Consensus       275 lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr  353 (436)
T KOG2058|consen  275 LPR-YYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFR  353 (436)
T ss_pred             chh-hcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHH
Confidence            986 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcc
Q psy17384        163 AALDFKKAYDS  173 (295)
Q Consensus       163 ~~l~i~kafd~  173 (295)
                      +++++++..+.
T Consensus       354 ~Alai~k~~ee  364 (436)
T KOG2058|consen  354 VALAILKKHEE  364 (436)
T ss_pred             HHHHHHHHhHH
Confidence            99999998877

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=100.00  E-value=1.5e-34  Score=240.43  Aligned_cols=151  Identities=32%  Similarity=0.662  Sum_probs=141.7

Q ss_pred             hHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccch
Q psy17384          6 TITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVF   84 (295)
Q Consensus         6 ~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~   84 (295)
                      ..+||++||.||+|+++.|+.. +.+++.|+|||.+|+.++|++||||||++||++++.++++|++|||+|.+++++..+
T Consensus        46 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~  125 (199)
T smart00164       46 IVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGP  125 (199)
T ss_pred             hHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCc
Confidence            4689999999999999999864 467999999999999999999999999999999999997899999999999998775


Q ss_pred             hhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHh-cCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccch
Q psy17384         85 YVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHS-CGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGE  157 (295)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~-~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~  157 (295)
                       .+|.++.+++...+..++.++++.+|++++||++ .|+.+..|+.+|++++|++++|.+.+.|+||.++.+|.
T Consensus       126 -~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~  198 (199)
T smart00164      126 -NFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS  198 (199)
T ss_pred             -ccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence             6678888889999999999999999999999996 99999999999999999999999999999999999984

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>COG5210 GTPase-activating protein [General function prediction only]

Probab=99.97  E-value=3.3e-31  Score=248.02  Aligned_cols=169  Identities=29%  Similarity=0.530  Sum_probs=159.3

Q ss_pred             hhHHHHHHhhhhcCCCCcCCCCCCccHH-HHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          5 NTITQIRLDISRTFPHLCLFQNEGPYYN-TLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~-~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      .+.++|++|+.||+|++..|+.....+. .|+|||.+|+.++|++||||||++++|+|+.++.+|++||||+++++....
T Consensus       255 ~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~  334 (496)
T COG5210         255 EIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYG  334 (496)
T ss_pred             HHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence            4689999999999999999987654333 599999999999999999999999999999999999999999999999666


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA  163 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~  163 (295)
                      ...+|..+..++......+..+++..+|++|+|+...|+.+.+|+++|++++|.+.+|.+.+.||||.++.+|..+++.+
T Consensus       335 l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~  414 (496)
T COG5210         335 LPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQL  414 (496)
T ss_pred             chhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcc
Q psy17384        164 ALDFKKAYDS  173 (295)
Q Consensus       164 ~l~i~kafd~  173 (295)
                      ++++++....
T Consensus       415 ~~~~l~~~~~  424 (496)
T COG5210         415 ALAILKLLRD  424 (496)
T ss_pred             HHHHHHhhhh
Confidence            9999988876

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=99.97  E-value=3.5e-31  Score=222.46  Aligned_cols=167  Identities=32%  Similarity=0.613  Sum_probs=147.7

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      .+..++|++|+.||+++...+.. +.+++.|.+||.+|+.++|++||+|||++|+++++....+|++|||++.+++ +..
T Consensus        44 ~~~~~~I~~Dv~rt~~~~~~~~~-~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~-~~~  121 (214)
T PF00566_consen   44 NKIFEQIDKDVNRTFPNSFLFKN-EQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLL-NYY  121 (214)
T ss_dssp             HTCHHHHHHHHCTSSTSCCCSTT-HHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHH-THH
T ss_pred             chHHHHHHHhhhhhcccchhhhh-cchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchh-ccc
Confidence            46689999999999995544444 3569999999999999999999999999999999977777999999999999 444


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhh-HHh
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVF-IFR  162 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~-l~~  162 (295)
                      ...+|.++.+++...+..++.++++++|++++|+++.|+.+..++.+|+.++|++.+|.+.+.|+|| ++.+|.++ ++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~  200 (214)
T PF00566_consen  122 LPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFF  200 (214)
T ss_dssp             GGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHH
T ss_pred             ccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHH
Confidence            5788888888899999999999999999999999999999999999999999999999999999999 77788877 888


Q ss_pred             HHhHHHHHhcc
Q psy17384        163 AALDFKKAYDS  173 (295)
Q Consensus       163 ~~l~i~kafd~  173 (295)
                      +++++++.+++
T Consensus       201 ~~lail~~~~~  211 (214)
T PF00566_consen  201 IALAILKYLRD  211 (214)
T ss_dssp             HHHHHHHHTHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG2222|consensus

Probab=99.95  E-value=5.7e-28  Score=212.47  Aligned_cols=183  Identities=25%  Similarity=0.410  Sum_probs=169.6

Q ss_pred             hHHHHHHhhhhcCCCCcCCCC-CCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccch
Q psy17384          6 TITQIRLDISRTFPHLCLFQN-EGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVF   84 (295)
Q Consensus         6 ~~~~I~~Dv~Rt~~~~~~f~~-~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~   84 (295)
                      +-.||++|+-|+.|++..|.+ ++.|.+.|+|||++.+...|++||||||.-|++.+|+++. |+.|||++..+++...+
T Consensus       211 ~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaaiiedilp  289 (848)
T KOG2222|consen  211 IGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAIIEDILP  289 (848)
T ss_pred             hhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHHHHHhcC
Confidence            457999999999999988876 4688999999999999999999999999999999999999 99999999999999999


Q ss_pred             hhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHH
Q psy17384         85 YVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAA  164 (295)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~  164 (295)
                      ..||+...-++++.-.+...+++.+.|.+-+.++.+++..+.....||+|+|..++-....+||||.++.+|.-.++++.
T Consensus       290 ~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~  369 (848)
T KOG2222|consen  290 ANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLI  369 (848)
T ss_pred             chhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHH
Confidence            99999988999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcc---------cChHHHHHHHHHhCCC
Q psy17384        165 LDFKKAYDS---------IDRETLFNILEEYGAD  189 (295)
Q Consensus       165 l~i~kafd~---------v~~~~l~~~L~~~g~~  189 (295)
                      +.++|.-+.         -+...+++.|..++-.
T Consensus       370 i~ilkmkeqdi~~iaettensa~if~als~ip~~  403 (848)
T KOG2222|consen  370 IGILKMKEQDIKEIAETTENSADIFNALSDIPAE  403 (848)
T ss_pred             HHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCch
Confidence            999988655         3667777777776554

>KOG4567|consensus

Probab=99.95  E-value=7e-28  Score=202.05  Aligned_cols=184  Identities=24%  Similarity=0.405  Sum_probs=152.5

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCCC--c------------------------cHHHHHHHHHHHHhhcCCCccccCchHH
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNEG--P------------------------YYNTLHYMLASYVSYNTRISYVQGMSYI   57 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~--~------------------------~~~~L~~IL~~~~~~~p~igY~QGm~~i   57 (295)
                      -+.+.||++||.||.|+..+|+...  +                        ......|||..||..||.+||+||||.|
T Consensus       118 ~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEI  197 (370)
T KOG4567|consen  118 CEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEI  197 (370)
T ss_pred             hHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHH
Confidence            4778999999999999999998521  1                        1223578999999999999999999999


Q ss_pred             HHHHHHhcC----------CHHHHHHHHHHHhhccchhhhcc----cChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCC
Q psy17384         58 CALFILNIS----------TAYEAFVCFCNFLNKSVFYVFYS----LNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT  123 (295)
Q Consensus        58 ~~~ll~~~~----------~e~~af~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~  123 (295)
                      +||++.++.          .|++||.||+++|...  +++|.    .+..+++..+..+..++++++-+||.|+++.++.
T Consensus       198 laPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMsei--rDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~  275 (370)
T KOG4567|consen  198 LAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEI--RDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIH  275 (370)
T ss_pred             hhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHH--HHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence            999999875          4889999999999875  34443    3345677778999999999999999999999999


Q ss_pred             ChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchh--hHHhHHhHHHHHhcc----cChHHHHHHHHHhCCC
Q psy17384        124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEV--FIFRAALDFKKAYDS----IDRETLFNILEEYGAD  189 (295)
Q Consensus       124 ~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~--~l~~~~l~i~kafd~----v~~~~l~~~L~~~g~~  189 (295)
                      |..|+++|+..+++.++|++.+.++||..++...+  ++..++.+++-.-+.    -|++.-++.|++.+..
T Consensus       276 PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~t  347 (370)
T KOG4567|consen  276 PQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTT  347 (370)
T ss_pred             ccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCC
Confidence            99999999999999999999999999999987644  555666665544443    4777777888877553

>KOG1092|consensus

Probab=99.93  E-value=6.2e-26  Score=197.27  Aligned_cols=197  Identities=21%  Similarity=0.316  Sum_probs=176.8

Q ss_pred             hhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC------------------
Q psy17384          5 NTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS------------------   66 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~------------------   66 (295)
                      +..+||..|+.|+.|+...|+.... ++.+.|||..++.++|-.||+||.++++.+++.++-                  
T Consensus       242 d~~rQI~id~prm~p~~~l~q~~~v-q~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l  320 (484)
T KOG1092|consen  242 DTWRQIPIDIPRMNPHIPLFQQKIV-QEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLL  320 (484)
T ss_pred             ccccccccCCCCCCccccchhhHHH-HHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhc
Confidence            4678999999999999999988754 899999999999999999999999999999886541                  


Q ss_pred             -------CHHHHHHHHHHHhhccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhh
Q psy17384         67 -------TAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKA  139 (295)
Q Consensus        67 -------~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~  139 (295)
                             -|++||||+.+|++.+  +..|...++|++...+.++.+++..++++++||+++|++-..|+++|+-+|+.++
T Consensus       321 ~~E~~~~iEADsyWClskLLD~I--QDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE  398 (484)
T KOG1092|consen  321 PAENAEDIEADAYWCLSKLLDGI--QDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMRE  398 (484)
T ss_pred             cHHHHhhhhhhHHHHHHHHHHHh--hhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhh
Confidence                   4889999999999985  5677888899999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHhhcccccc---hhhHHhHHhHHHHHhcc----cChHHHHHHHHHhCCCchhHHHHHHhhcccc
Q psy17384        140 MGLDLVCKIWDLVMRDG---EVFIFRAALDFKKAYDS----IDRETLFNILEEYGADAKTVAIIKESLQATK  204 (295)
Q Consensus       140 l~~~~~~riwD~~~~~g---~~~l~~~~l~i~kafd~----v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~  204 (295)
                      +|++.+.|+||.|++++   ..++.+++.|++-.+.+    .|+.+++-.|++++...+--+-|.-+++++.
T Consensus       399 ~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~  470 (484)
T KOG1092|consen  399 FPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAF  470 (484)
T ss_pred             ccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Confidence            99999999999999996   45677888898877766    7999999999999998888777777776653

>KOG4436|consensus

Probab=99.91  E-value=2.7e-24  Score=199.31  Aligned_cols=181  Identities=23%  Similarity=0.431  Sum_probs=165.7

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKS   82 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~   82 (295)
                      .+..+.|-.|+-||||++++|+.. +.++..+.|+|.+|+..+|++|||||..++||+||+++. |+.||.++..+|...
T Consensus       619 te~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~-e~~afellk~LM~~r  697 (948)
T KOG4436|consen  619 TEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS-EENAFELLKFLMFDR  697 (948)
T ss_pred             HHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-hhhHHHHHHHHHHHH
Confidence            355677999999999999999975 788999999999999999999999999999999999999 999999999999988


Q ss_pred             chhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHh
Q psy17384         83 VFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFR  162 (295)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~  162 (295)
                      ..+.-|.++...++..+..+..+++.+.|+||+|++++.+.|+.|+.+|++|.|+..+|...+.|++|..+.+|..++++
T Consensus       698 ~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK  777 (948)
T KOG4436|consen  698 GMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFK  777 (948)
T ss_pred             hhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhh
Confidence            88888888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcc-----cChHHHHHHHHH
Q psy17384        163 AALDFKKAYDS-----IDRETLFNILEE  185 (295)
Q Consensus       163 ~~l~i~kafd~-----v~~~~l~~~L~~  185 (295)
                      ++++++...+.     -+.+.+..+++.
T Consensus       778 ~a~~llsv~k~~l~e~dn~e~i~d~~k~  805 (948)
T KOG4436|consen  778 VALSLLSVHKQLLLEKDNFEEIVDFLKT  805 (948)
T ss_pred             hHHHHHHhhHHHHHhhhhHHHHHHHHHH
Confidence            99999877644     355555555543

>KOG4347|consensus

Probab=99.91  E-value=7.4e-25  Score=199.80  Aligned_cols=166  Identities=23%  Similarity=0.358  Sum_probs=154.9

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      ....+.|++|+.|..|+++-|+.+. +...|+|||.||++.||+|||||.||-+++.++.+.. |++|||+++.+.+...
T Consensus       241 ~~a~eEIE~Dl~rsLpEhpA~Q~e~-gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~-EEeafwll~~lce~~i  318 (671)
T KOG4347|consen  241 SVATEEIEPDLGRSLPEHPAFQSEP-GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCK-EEEAFWLLSKLCEIYI  318 (671)
T ss_pred             ccccccccCCCCCCCCcchhhhCCC-chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhc-cchHHHHHHHHHHHhc
Confidence            3456789999999999999999864 5899999999999999999999999999999999999 9999999999999977


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA  163 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~  163 (295)
                       .+||+...-+......+|+.+++...|.+++|+.+.| ...+...+||+++|...+|++...||.|.|+.+|.++++.+
T Consensus       319 -p~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqi  396 (671)
T KOG4347|consen  319 -PDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQI  396 (671)
T ss_pred             -ccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHH
Confidence             5888888888888899999999999999999999999 66788999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcc
Q psy17384        164 ALDFKKAYDS  173 (295)
Q Consensus       164 ~l~i~kafd~  173 (295)
                      +++++++...
T Consensus       397 aLail~~N~~  406 (671)
T KOG4347|consen  397 ALAILKQNAE  406 (671)
T ss_pred             HHHHHHhhHH
Confidence            9999998754

>KOG1093|consensus

Probab=99.90  E-value=3.3e-23  Score=186.29  Aligned_cols=167  Identities=25%  Similarity=0.481  Sum_probs=152.5

Q ss_pred             hhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHH-hcCCHHHHHHHHHHHhhccc
Q psy17384          5 NTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL-NISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~-~~~~e~~af~~~~~l~~~~~   83 (295)
                      .+.+||+.|+.|+.......+... ++++|+|+|.||+.++|...|.||+..+|+||+. ++++|+.||.|+..++-+++
T Consensus       389 ~tdrqievdiprchQyd~~lsSp~-~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc  467 (725)
T KOG1093|consen  389 STDRQIEVDIPRCHQYDELLSSPK-GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC  467 (725)
T ss_pred             cchhhhhcccchhhhcccccCCHH-HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH
Confidence            467899999999997777766654 5999999999999999999999999999999874 67789999999999999988


Q ss_pred             hhhhccc-ChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHh
Q psy17384         84 FYVFYSL-NIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFR  162 (295)
Q Consensus        84 ~~~~~~~-~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~  162 (295)
                      . .||.. +..-+..++.+|.+++..++|.|++||...|+.|+.|+++||+|+|++++|.+....+||..+..+..+.+.
T Consensus       468 q-~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplm  546 (725)
T KOG1093|consen  468 Q-HFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLM  546 (725)
T ss_pred             H-HHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHH
Confidence            4 55554 667788999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhHHHHHhcc
Q psy17384        163 AALDFKKAYDS  173 (295)
Q Consensus       163 ~~l~i~kafd~  173 (295)
                      +++|++...++
T Consensus       547 i~vAil~~lR~  557 (725)
T KOG1093|consen  547 IGVAILIQLRD  557 (725)
T ss_pred             HHHHHHHHhhh
Confidence            99999988776

>KOG1102|consensus

Probab=99.87  E-value=1.3e-22  Score=183.55  Aligned_cols=176  Identities=31%  Similarity=0.500  Sum_probs=159.2

Q ss_pred             HHHHHHhhhhcCCCCcCCCC-CCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccchh
Q psy17384          7 ITQIRLDISRTFPHLCLFQN-EGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFY   85 (295)
Q Consensus         7 ~~~I~~Dv~Rt~~~~~~f~~-~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~   85 (295)
                      .++| +|+.||+|.+..|.. .+.+++.+.+|+.+|+.++|++||||||..++++++.++. |++||+++++++.... .
T Consensus       186 ~~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~-~  262 (397)
T KOG1102|consen  186 SEII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYG-L  262 (397)
T ss_pred             hHHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccc-h
Confidence            4566 999999999999987 3567999999999999999999999999999999999999 9999999999999887 4


Q ss_pred             hhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHh
Q psy17384         86 VFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL  165 (295)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l  165 (295)
                      +.+..+..+++..+..++.+++...|+++.|+...++...+|+.+|++|+|+..+|+..+.|+||.++.+|...++.+++
T Consensus       263 ~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~  342 (397)
T KOG1102|consen  263 DLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSL  342 (397)
T ss_pred             hcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHH
Confidence            55588899999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHhcc----cChHHHHHHHHH
Q psy17384        166 DFKKAYDS----IDRETLFNILEE  185 (295)
Q Consensus       166 ~i~kafd~----v~~~~l~~~L~~  185 (295)
                      ++.+....    .+.+.+.+.+..
T Consensus       343 ~l~~~~~~~~~~~~~e~~~~~l~~  366 (397)
T KOG1102|consen  343 ALLKHKADDLLDLDFESLLSYLRV  366 (397)
T ss_pred             HHhhhhhHHHhhccHHHHHHHHhc
Confidence            88877765    456666666654

>KOG2224|consensus

Probab=99.82  E-value=1.5e-20  Score=164.19  Aligned_cols=167  Identities=20%  Similarity=0.353  Sum_probs=132.1

Q ss_pred             HHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc--
Q psy17384          7 ITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV--   83 (295)
Q Consensus         7 ~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~--   83 (295)
                      .-.++|||.||.+++++|..+ +++.+.++|||..|+.|||.+||.|||+++.++.+.-..+|.++||||+.+|....  
T Consensus       496 q~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdl  575 (781)
T KOG2224|consen  496 QFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDL  575 (781)
T ss_pred             EEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhh
Confidence            335789999999999999964 67899999999999999999999988888888877766556666666666655210  


Q ss_pred             ----------------------hhhhc--ccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCC--hhhHHHHHHHHhh
Q psy17384         84 ----------------------FYVFY--SLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTP--DLYLLDWIYTLFS  137 (295)
Q Consensus        84 ----------------------~~~~~--~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~--~~~~~~w~~~lf~  137 (295)
                                            ...+|  ++....+...+-.+..+++...|..|+|+.++|-+.  ..|+-+|++..|.
T Consensus       576 vapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfk  655 (781)
T KOG2224|consen  576 VAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFK  655 (781)
T ss_pred             hhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhh
Confidence                                  01333  244456667777889999999999999999987443  3678899999999


Q ss_pred             hhhhhhHHHHHhhcccccc--hhhHHhHHhHHHHHhcc
Q psy17384        138 KAMGLDLVCKIWDLVMRDG--EVFIFRAALDFKKAYDS  173 (295)
Q Consensus       138 ~~l~~~~~~riwD~~~~~g--~~~l~~~~l~i~kafd~  173 (295)
                      +++|-..+.|+|+.++.+-  .-+.+.++++|...|.+
T Consensus       656 ref~ea~airiweacwa~y~tdyfhlficlaiiaiy~d  693 (781)
T KOG2224|consen  656 REFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYAD  693 (781)
T ss_pred             hcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998764  34556688888888755

>KOG1091|consensus

Probab=99.81  E-value=2.3e-19  Score=161.55  Aligned_cols=195  Identities=18%  Similarity=0.244  Sum_probs=140.1

Q ss_pred             hhhHHHHHHhhhhcCCCC-cCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC----------------
Q psy17384          4 DNTITQIRLDISRTFPHL-CLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS----------------   66 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~----------------   66 (295)
                      .|..+.|+.|+.||||.+ .+|+..+. +..|++||..|+..||++||-|||+++.|+++++..                
T Consensus       102 ~EL~~~i~qDvsRtfPe~~~fFqs~~~-q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~  180 (625)
T KOG1091|consen  102 AELEKTIDQDVSRTFPEHSLFFQSPEV-QGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDK  180 (625)
T ss_pred             HHHHHhhcchhhccCcchhhhhcCchh-hHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhh
Confidence            467899999999999999 77777654 899999999999999999999999999999987653                


Q ss_pred             ---CHHH-----------HH--HHHHHHhhccc-----------------h-----hhhcccChHhHHHHHHHHHHHHHh
Q psy17384         67 ---TAYE-----------AF--VCFCNFLNKSV-----------------F-----YVFYSLNIRMMQAYYATYNDLFKY  108 (295)
Q Consensus        67 ---~e~~-----------af--~~~~~l~~~~~-----------------~-----~~~~~~~~~~~~~~~~~~~~ll~~  108 (295)
                         .|.+           ++  .+++.+|..-.                 +     ..-+.+..+.+......+..++.+
T Consensus       181 l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~  260 (625)
T KOG1091|consen  181 LGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAK  260 (625)
T ss_pred             cCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhh
Confidence               1222           22  23333332210                 0     001112233344555678899999


Q ss_pred             hChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhh-cccccchhhH--HhHHhHHHHHhcc----cChHHHHH
Q psy17384        109 NLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWD-LVMRDGEVFI--FRAALDFKKAYDS----IDRETLFN  181 (295)
Q Consensus       109 ~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD-~~~~~g~~~l--~~~~l~i~kafd~----v~~~~l~~  181 (295)
                      .++.++.||.+.|+.|.+|.++|+..||-++||+..++.+|| ..+.++....  -.++++++....+    .+....++
T Consensus       261 ~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~tcL~  340 (625)
T KOG1091|consen  261 VDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQTCLQ  340 (625)
T ss_pred             ccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            999999999999999999999999999999999999999999 6666654432  3345555544333    45555666


Q ss_pred             HHHHhCCCchhHHHHHHh
Q psy17384        182 ILEEYGADAKTVAIIKES  199 (295)
Q Consensus       182 ~L~~~g~~~~~~~~I~~~  199 (295)
                      .|-+++...+.-..|+..
T Consensus       341 ~Lm~yP~~~Dv~~~iekA  358 (625)
T KOG1091|consen  341 YLMNYPEIIDVDKFIEKA  358 (625)
T ss_pred             HHhcCCCcCcHHHHHHHH
Confidence            676666655544444433

>KOG2221|consensus

Probab=99.78  E-value=2.8e-19  Score=143.30  Aligned_cols=126  Identities=26%  Similarity=0.457  Sum_probs=119.3

Q ss_pred             hhHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          5 NTITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      ++.+.|++|+.|.||.+.+|-.. +.+++.|.|+|.+|..++|+.||||+-..|+++++++++ +++|||||+++.+++.
T Consensus       141 ~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~~vqicekyl  219 (267)
T KOG2221|consen  141 KTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWCFVQICEKYL  219 (267)
T ss_pred             cchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHHHHHHHHHHc
Confidence            46789999999999999999874 577999999999999999999999999999999999999 9999999999999987


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHH
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWI  132 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~  132 (295)
                       .+||.++.+.++..-.++..++++..|..|.|+...+++|..|...||
T Consensus       220 -qgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF  267 (267)
T KOG2221|consen  220 -QGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF  267 (267)
T ss_pred             -ccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence             699999999999999999999999999999999999999999999996

>KOG2197|consensus

Probab=99.76  E-value=3e-19  Score=164.80  Aligned_cols=164  Identities=21%  Similarity=0.375  Sum_probs=143.8

Q ss_pred             hhHHHHHHhhhhcCCCCcCCCCCC-ccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          5 NTITQIRLDISRTFPHLCLFQNEG-PYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~~~f~~~~-~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      +-...|.+||.||.+.+.++.... ++...|..||.+|+.+++++||||||+++.++++.++++|.+|||||+.+|++. 
T Consensus       236 ~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~-  314 (488)
T KOG2197|consen  236 ERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRL-  314 (488)
T ss_pred             hhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHH-
Confidence            345679999999999998888643 368999999999999999999999999999999999999999999999999984 


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccc--hhhHH
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDG--EVFIF  161 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g--~~~l~  161 (295)
                       ...|..+..++......+..+++..+|.+++|++..+...-.++++|+...|.+++..+.+.++|+..+..-  ..+.+
T Consensus       315 -~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~  393 (488)
T KOG2197|consen  315 -RHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHL  393 (488)
T ss_pred             -hhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHH
Confidence             355667778888888888999999999999999999998889999999999999999999999999988764  34455


Q ss_pred             hHHhHHHHH
Q psy17384        162 RAALDFKKA  170 (295)
Q Consensus       162 ~~~l~i~ka  170 (295)
                      +++.+++..
T Consensus       394 ~~~~~~l~~  402 (488)
T KOG2197|consen  394 YVAPAILNK  402 (488)
T ss_pred             HHHHhhhhc
Confidence            566666655

>KOG2595|consensus

Probab=99.74  E-value=8.8e-18  Score=143.05  Aligned_cols=192  Identities=18%  Similarity=0.251  Sum_probs=145.5

Q ss_pred             hhHHHHHHhhhhcCCCCcCCCC---CCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy17384          5 NTITQIRLDISRTFPHLCLFQN---EGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNK   81 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~~~f~~---~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~   81 (295)
                      +...|+..|+.|++...+--..   ....++.|..++......+|++.|.||.++||..+++++. |.+|+.+..++...
T Consensus        95 kd~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~  173 (395)
T KOG2595|consen   95 KDYNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTL  173 (395)
T ss_pred             cccceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHH
Confidence            4567899999999855432111   1123567777777778899999999999999999999999 99999998888755


Q ss_pred             cchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhh-hhhHHHHHhhcccccchhhH
Q psy17384         82 SVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAM-GLDLVCKIWDLVMRDGEVFI  160 (295)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l-~~~~~~riwD~~~~~g~~~l  160 (295)
                      . .++|+.+..++..+.+..+..+++..+|++|+.+++..+.+ +|+.+|++|||++.+ +++.+.|++|.+++...-..
T Consensus       174 ~-lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~p  251 (395)
T KOG2595|consen  174 H-LRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLP  251 (395)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchh
Confidence            4 47888888899899999999999999999999999999888 899999999999998 69999999999998875544


Q ss_pred             HhHHhHHHHHhcc------cChHHHHHHHHHhCCCchhHHHHHHh
Q psy17384        161 FRAALDFKKAYDS------IDRETLFNILEEYGADAKTVAIIKES  199 (295)
Q Consensus       161 ~~~~l~i~kafd~------v~~~~l~~~L~~~g~~~~~~~~I~~~  199 (295)
                      .+++.++....++      -+-..+-..|..++-+-..-..|+..
T Consensus       252 iyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s  296 (395)
T KOG2595|consen  252 IYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKES  296 (395)
T ss_pred             HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHH
Confidence            4444444432222      12223334444444444444454443

>KOG4436|consensus

Probab=99.49  E-value=1.1e-13  Score=129.43  Aligned_cols=162  Identities=19%  Similarity=0.317  Sum_probs=150.0

Q ss_pred             hHHHHHHhhhhcCCCCcCCCCCCcc--------HHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHH
Q psy17384          6 TITQIRLDISRTFPHLCLFQNEGPY--------YNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCN   77 (295)
Q Consensus         6 ~~~~I~~Dv~Rt~~~~~~f~~~~~~--------~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~   77 (295)
                      ++-.|..|+.||+|.+.+|++...+        ++.|.|+..+|....-++|||||-+.+++.+++.++ ++.+|..++.
T Consensus       227 ~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~-~E~assv~~~  305 (948)
T KOG4436|consen  227 HIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP-VEEASSVKVQ  305 (948)
T ss_pred             HHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc-HHHHHHHHHH
Confidence            4558999999999999999987655        899999999999999999999999999999999999 9999999999


Q ss_pred             HhhccchhhhcccChHhHHHHHHHHHHHHHhhCh-hhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccc
Q psy17384         78 FLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLP-KLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDG  156 (295)
Q Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P-~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g  156 (295)
                      +|..+.....+.+....+...+..++...+...| .++.|+.+.++..++|.-.||++.|...+|+....++.|.+..+|
T Consensus       306 lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~eg  385 (948)
T KOG4436|consen  306 LMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEG  385 (948)
T ss_pred             HHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhcccccccccccc
Confidence            9999888888888777777777788888999999 999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhHHhHHH
Q psy17384        157 EVFIFRAALDFK  168 (295)
Q Consensus       157 ~~~l~~~~l~i~  168 (295)
                      -...++..+++.
T Consensus       386 llk~fr~~ia~~  397 (948)
T KOG4436|consen  386 LLKRFRDSIAYL  397 (948)
T ss_pred             HHHHHhhhHHHH
Confidence            877778888888

>KOG3636|consensus

Probab=99.15  E-value=2.7e-10  Score=100.91  Aligned_cols=176  Identities=22%  Similarity=0.394  Sum_probs=126.9

Q ss_pred             HHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCch--HHHHHH-HHhcCCHHHHHHHHHHHhhcc
Q psy17384          7 ITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMS--YICALF-ILNISTAYEAFVCFCNFLNKS   82 (295)
Q Consensus         7 ~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~--~i~~~l-l~~~~~e~~af~~~~~l~~~~   82 (295)
                      ..+|++|..|-......=.++ .+-...|..++.-|+.. ..+.|.....  .+.-++ ++.++ ..+.|.+|-.+++++
T Consensus        67 Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~-Rn~~Y~~d~gWi~lL~pl~~L~lp-rsd~fN~F~ai~~kY  144 (669)
T KOG3636|consen   67 QCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKK-RNMDYIKDIGWITLLEPLLLLNLP-RSDEFNVFFAITTKY  144 (669)
T ss_pred             hhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhc-cCCcccccccHHHHHHHHHHhcCC-cchhhhhhHhhhhcc
Confidence            457888887765443221111 22345789999988763 2444555443  333343 45566 899999999999999


Q ss_pred             chhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHh
Q psy17384         83 VFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFR  162 (295)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~  162 (295)
                      .|++--..+     ..+..|.-+++.++|+|..||....+.|++|+..||-++|+...+.+.+..+||.|+..+..++..
T Consensus       145 IPkdcrpkg-----~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vf  219 (669)
T KOG3636|consen  145 IPKDCRPKG-----QIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVF  219 (669)
T ss_pred             cCCCCCCCC-----ccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehH
Confidence            887654433     235678899999999999999999999999999999999999999999999999999999887542


Q ss_pred             -HHhHHH-HHh------cccChHHHHHHHHHhCCC
Q psy17384        163 -AALDFK-KAY------DSIDRETLFNILEEYGAD  189 (295)
Q Consensus       163 -~~l~i~-kaf------d~v~~~~l~~~L~~~g~~  189 (295)
                       +++-++ .|-      ++-+.+..+++|+.++..
T Consensus       220 fLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~  254 (669)
T KOG3636|consen  220 FLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ  254 (669)
T ss_pred             HHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence             222222 222      224678888888877554

>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin

Probab=99.13  E-value=2.2e-10  Score=96.75  Aligned_cols=81  Identities=27%  Similarity=0.314  Sum_probs=69.3

Q ss_pred             hHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHH
Q psy17384        162 RAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKV  241 (295)
Q Consensus       162 ~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l  241 (295)
                      .+.+|+.++|++++|+.+.+.|+..+.+..+..++..++....      ...+......+|+|||+|+||+||+++++++
T Consensus        72 ~~~~Di~~~Fdsi~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~GlpqG~~lSp~L~~~~l~~l  145 (226)
T cd01651          72 VIEGDIKGFFDNIDHDLLLKILKRRIGDKRVLRLIRKWLKAGV------LEDGKLVETEKGTPQGGVISPLLANIYLHEL  145 (226)
T ss_pred             EEEccHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHHHhceE------ccCCeEeCCCCCcCCCccHHHHHHHHHHHHH
Confidence            3679999999999999999999999999999999998854332      1234456789999999999999999999999


Q ss_pred             HHHHHhh
Q psy17384        242 IREWRII  248 (295)
Q Consensus       242 ~~~~~~~  248 (295)
                      .+.+...
T Consensus       146 d~~l~~~  152 (226)
T cd01651         146 DKFVEEK  152 (226)
T ss_pred             HHHHHHh
Confidence            9888764

RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).

>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons

Probab=98.98  E-value=8.6e-10  Score=92.61  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=60.4

Q ss_pred             HhHHhHHHHHhcccChHHHHHHHHHhCCC-chhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHH
Q psy17384        161 FRAALDFKKAYDSIDRETLFNILEEYGAD-AKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLE  239 (295)
Q Consensus       161 ~~~~l~i~kafd~v~~~~l~~~L~~~g~~-~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~  239 (295)
                      +.+.+|+.++|++++|+.|.+.|++.+.+ ..+..++..+.+.                 ..|+|||+|+||+||+++++
T Consensus        58 ~v~~~Di~~fFdsI~~~~L~~~l~~~~~~~~~~~~~l~~~~~~-----------------~~GlpQG~~lSp~Lanl~l~  120 (214)
T cd03487          58 YVLKLDIKDFFPSITFERVRGVFRSLGYFSPDVATILAKLCTY-----------------NGHLPQGAPTSPALSNLVFR  120 (214)
T ss_pred             EEEEeehhhhcccCCHHHHHHHHHHcCCCCHHHHHHHHHHHhC-----------------CCCcCCCCcccHHHHHHHHH
Confidence            34689999999999999999999999998 7777787766532                 23999999999999999999


Q ss_pred             HHHHHHHh
Q psy17384        240 KVIREWRI  247 (295)
Q Consensus       240 ~l~~~~~~  247 (295)
                      ++.+.+..
T Consensus       121 ~~d~~l~~  128 (214)
T cd03487         121 KLDERLSK  128 (214)
T ss_pred             HHHHHHHH
Confidence            99988765

The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.

>KOG2801|consensus

Probab=98.88  E-value=1.1e-08  Score=86.61  Aligned_cols=145  Identities=17%  Similarity=0.234  Sum_probs=108.5

Q ss_pred             ccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccch-hhhcccChHhHHHHHHHHHHHHH
Q psy17384         29 PYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVF-YVFYSLNIRMMQAYYATYNDLFK  107 (295)
Q Consensus        29 ~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~  107 (295)
                      .+....+.||.+.++..|++.+|+.+..++++++++.-||+++|.-.+.++.-.-+ +.....+.-.....+-.|..++.
T Consensus       109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlvn  188 (559)
T KOG2801|consen  109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVN  188 (559)
T ss_pred             cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHH
Confidence            35668899999999999999999999999999999998899999888877654332 22223223334445556777776


Q ss_pred             hhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHhHHHHHhccc
Q psy17384        108 YNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI  174 (295)
Q Consensus       108 ~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l~i~kafd~v  174 (295)
                      +.....++.+....-+......+|-..+| .++|+-...|++|.++.+|.+.+++++++++|.|.+|
T Consensus       189 kycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykvlyrvalailkffhkv  254 (559)
T KOG2801|consen  189 KYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKVLYRVALAILKFFHKV  254 (559)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHHHHHHHHHHHHHHHHh
Confidence            66655555443322222233456777666 5799999999999999999999999999999999773

>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons

Probab=98.73  E-value=6.6e-10  Score=92.76  Aligned_cols=88  Identities=35%  Similarity=0.589  Sum_probs=79.6

Q ss_pred             HHhHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHH
Q psy17384        160 IFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLE  239 (295)
Q Consensus       160 l~~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~  239 (295)
                      .+.+.+|+.++|++++++.+.+.+..++.+..++.|+..++.+....+..++.. ......+|+|||+++||++|+++++
T Consensus        64 ~~~~~~Di~~~f~sI~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~glpqG~~~S~~l~~~~l~  142 (214)
T PF00078_consen   64 LYFLKLDISKAFDSIPHHRLLRKLKRFGVPKKLIRLIQNLLSDRTAKVYLDGDL-SPYFQKRGLPQGSPLSPLLFNIYLD  142 (214)
T ss_dssp             SEEEEEECCCCGGGSBBHTTTGGGGEEEEECCSCHHHHHHHHHHHH-EECGCSS-SEEEEESBS-TTSTCHHHHHHHHHH
T ss_pred             cccceeccccccccceeeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhccccc
Confidence            455789999999999999999999999999999999999999999999998875 8888999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy17384        240 KVIREWRII  248 (295)
Q Consensus       240 ~l~~~~~~~  248 (295)
                      .+.+.+...
T Consensus       143 ~l~~~~~~~  151 (214)
T PF00078_consen  143 DLDRELQQE  151 (214)
T ss_dssp             HHHHHHHHH
T ss_pred             ccccccccc
Confidence            999988764

The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (2.7.7.49 from EC). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].; GO: 0003723 RNA binding, 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 3RWE_C 3DU6_B 3DU5_A 3KYL_A 2WOM_B 1DTQ_A 2OPS_A 3FFI_A 1VRU_B ....

>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons

Probab=98.69  E-value=7.8e-09  Score=82.57  Aligned_cols=79  Identities=22%  Similarity=0.169  Sum_probs=61.9

Q ss_pred             hHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHHHHH
Q psy17384        165 LDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIRE  244 (295)
Q Consensus       165 l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l~~~  244 (295)
                      +|+.++|++++|+.+...+++.+.+.....+++.+.....     +..........+|+|||+++||+|+++++.++-..
T Consensus         1 lDi~~fF~sI~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~GlpqG~~lS~~L~~~~l~~~d~~   75 (158)
T cd01646           1 LDISNFYDSIYTHSLPWALHGKIKAKQLLKLLRLLGNLLD-----LLLLSSQYGQTNGLPIGPLTSRFLANIYLNDVDHE   75 (158)
T ss_pred             CchhhccCcchHHHHHHHHHhhhhhHhhhhhHHHHHHHHH-----HHHHhccCCCCceEccCcchHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999988877643332111     11123345578899999999999999999999888


Q ss_pred             HHhh
Q psy17384        245 WRII  248 (295)
Q Consensus       245 ~~~~  248 (295)
                      +...
T Consensus        76 i~~~   79 (158)
T cd01646          76 LKSK   79 (158)
T ss_pred             HHhc
Confidence            7753

The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.

>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs)

Probab=98.61  E-value=1.2e-07  Score=83.07  Aligned_cols=94  Identities=21%  Similarity=0.174  Sum_probs=73.9

Q ss_pred             hHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHH
Q psy17384        162 RAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKV  241 (295)
Q Consensus       162 ~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l  241 (295)
                      .+-.|+.+.|++++|+.|+..|+..+++.+|+..|+.+++..-... -+|.......-++|+|||.++||+|-|+|+..+
T Consensus        24 vvd~Dik~fFdsIpH~~Lm~vL~~~~~~~~wL~li~r~L~APl~~~-~dg~~~~~r~r~rGtPqGgviSplLaNiyL~~l  102 (346)
T cd01709          24 VVQSDFKWFGPSLPHSTILAVLKFFGVPEKWLDFFKKFLEAPLRFV-ADGPDAPPRIRKRGTPMSHALSDVFGELVLFCL  102 (346)
T ss_pred             EEEeehHhhCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhCceeec-CCCCcccccccCCccCCCchhhHHHHHHHHHHH
Confidence            3579999999999999999999999999999999999998653322 122223445567899999999999999999988


Q ss_pred             HHHHHhhhhccccccc
Q psy17384        242 IREWRIISKEGSKFLT  257 (295)
Q Consensus       242 ~~~~~~~~~~~~~~~~  257 (295)
                      -..++... .|..+++
T Consensus       103 D~~v~~~~-~g~~l~R  117 (346)
T cd01709         103 DFAVNQAT-DGGLLYR  117 (346)
T ss_pred             HHHHHhcC-CCceEEE
Confidence            87777643 3544444

An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.

>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT)

Probab=98.57  E-value=5.3e-08  Score=73.86  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=29.5

Q ss_pred             ceeccCCccCCCCCchHhHHHHHHHHHHHHHhh
Q psy17384        216 PFEIKTGVRQGDGLSPLLFNCVLEKVIREWRII  248 (295)
Q Consensus       216 ~~~~~~G~~Qg~~lsp~lF~~~~~~l~~~~~~~  248 (295)
                      .+...+|+|||+|+||+||+++++.+.+.+...
T Consensus        13 ~~~~~~GlpQG~~lSp~L~nl~l~~l~~~~~~~   45 (119)
T cd01648          13 YYRQKVGIPQGSPLSSLLCSLYYADLENKYLSF   45 (119)
T ss_pred             hhhhcCcccCCcchHHHHHHHHHHHHHHHHHhh
Confidence            566899999999999999999999999887653

Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at

>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT)

Probab=98.53  E-value=4.4e-08  Score=82.35  Aligned_cols=49  Identities=53%  Similarity=0.813  Sum_probs=45.3

Q ss_pred             HhHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHH
Q psy17384        161 FRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEK  240 (295)
Q Consensus       161 ~~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~  240 (295)
                      +.+.+|+.+|||+++|+.+...|                                      |++||+++||+||++++++
T Consensus        83 ~~l~~Di~~aFdsi~~~~l~~~l--------------------------------------GipQG~~lSp~l~~l~~~~  124 (220)
T cd01650          83 VLVFLDFEKAFDSVDHEFLLKAL--------------------------------------GVRQGDPLSPLLFNLALDD  124 (220)
T ss_pred             EEEEEEHHhhcCcCCHHHHHHHh--------------------------------------CCccCCcccHHHHHHHHHH
Confidence            34789999999999999999988                                      9999999999999999999


Q ss_pred             HHHHHHh
Q psy17384        241 VIREWRI  247 (295)
Q Consensus       241 l~~~~~~  247 (295)
                      +.+.+..
T Consensus       125 l~~~~~~  131 (220)
T cd01650         125 LLRLLNK  131 (220)
T ss_pred             HHHHHHh
Confidence            9988864

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.

>KOG1005|consensus

Probab=96.96  E-value=0.00088  Score=64.81  Aligned_cols=123  Identities=20%  Similarity=0.333  Sum_probs=80.2

Q ss_pred             HhhhhhhhhHHHHHhhcccccch-hhHHhHHhHHHHHhcccChHHHHHHHHHh---------------CC----------
Q psy17384        135 LFSKAMGLDLVCKIWDLVMRDGE-VFIFRAALDFKKAYDSIDRETLFNILEEY---------------GA----------  188 (295)
Q Consensus       135 lf~~~l~~~~~~riwD~~~~~g~-~~l~~~~l~i~kafd~v~~~~l~~~L~~~---------------g~----------  188 (295)
                      +++.++..+.+.+-||.+...-. +-++.+.+|+.++||+++++.+...+++.               ++          
T Consensus       493 lg~si~~~d~~~~~~~~~k~r~~~~~LYfvk~DV~~cfDtIpqd~l~~II~~~l~~~r~~~~~~~~~~~vr~~f~s~~~~  572 (888)
T KOG1005|consen  493 LGNSILIHDDIYRKLDFLKKRSRNQKLYFVKADVSKCFDTIPQDELISIIRDRLFVQRKDAYTVAGKGRVRGNFVSLIFC  572 (888)
T ss_pred             CccceechHHHHHHHHHHHHHhhcCceEEEEEEhhhhhccCchHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeee
Confidence            44556778889999998876532 34677899999999999999999998321               00          


Q ss_pred             ---------------------------------CchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHH
Q psy17384        189 ---------------------------------DAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFN  235 (295)
Q Consensus       189 ---------------------------------~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~  235 (295)
                                                       ..++..||...+....  ++++|   .....+.|+|||++||.+|..
T Consensus       573 ~~d~~~n~~~~~~~~me~~~~lvie~~~~~~~Sss~l~~vi~~~l~~~~--vki~~---k~yvq~~GIpQGs~LSslLc~  647 (888)
T KOG1005|consen  573 SADVEPNAHVVNALKMETSDVLVIENVSREMLSSSDLFSVIRNMLSTNY--VKIGG---KSYVQKKGIPQGSILSSLLCH  647 (888)
T ss_pred             ccccchhHHHHHHhccCCCCeEEEEecceeecchhhHHHHHHHHHhhhe--EEECC---eEEEEecCccCCCchhHHHHH
Confidence                                             0112222222222221  22222   234568999999999999999


Q ss_pred             HHHHHHHHHHHh-hhhcccccccCCCCC
Q psy17384        236 CVLEKVIREWRI-ISKEGSKFLTKLPDN  262 (295)
Q Consensus       236 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~  262 (295)
                      +|.+++-+..-. ...+|...+.++-||
T Consensus       648 lyy~dle~~y~~~~~~~g~~vLlR~vDD  675 (888)
T KOG1005|consen  648 LYYGDLEDKYFSFEKEDGSIVLLRYVDD  675 (888)
T ss_pred             HHHHhHHHHHhhcccCCCcEEEEEeecc
Confidence            999999977544 344453344554444

>KOG1648|consensus

Probab=96.64  E-value=4.2e-05  Score=69.33  Aligned_cols=140  Identities=16%  Similarity=0.315  Sum_probs=93.2

Q ss_pred             hHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccchh
Q psy17384          6 TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFY   85 (295)
Q Consensus         6 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~   85 (295)
                      ....|++|+.|...+..+|.++.. .+. +++...|...+-+-||.|||.++.++++.-++||..+-.|+.-+|-...  
T Consensus       606 ~~~~~~kd~e~~~~~~~~fs~~~~-les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~--  681 (813)
T KOG1648|consen  606 NLHRIDKDVERCDRNLMFFSNKDN-LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQR--  681 (813)
T ss_pred             heeeecchhhhCcchheeecCCcc-hhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhc--
Confidence            356799999999999999988754 555 8888999999999999999999999999988877766556555443311  


Q ss_pred             hhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccc
Q psy17384         86 VFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDG  156 (295)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g  156 (295)
                      +-| +..+++...+-... +++..+|- -..+...    .-..++|+..-|.+.++.+....+|...+...
T Consensus       682 ~~~-~q~~~~~~~l~~~r-~~~v~~~l-~s~id~~----qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~  745 (813)
T KOG1648|consen  682 GKF-PQRPGMSKCLLNLR-LIQVVDPL-ISDIDYA----QALSFRWFLLDFKRELSYECTYKVWEVIWAAQ  745 (813)
T ss_pred             ccC-CCCCCccccccccc-chhhhcch-hcchhhh----hhcceeeeccCcccccCCCCcceeeEeecccc
Confidence            111 12223322221121 33333441 1112111    12337899999999999888888888877553

>KOG4768|consensus

Probab=96.28  E-value=0.01  Score=55.83  Aligned_cols=80  Identities=23%  Similarity=0.260  Sum_probs=65.8

Q ss_pred             HHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHHH
Q psy17384        163 AALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVI  242 (295)
Q Consensus       163 ~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l~  242 (295)
                      +..|+.+.||.+.|+.|+..|++.--+.-+++++...++.......  +   .....--|+|||++.||+|.|+++..|-
T Consensus       363 ie~DLkkcfdtIphd~LI~eL~~rIkdk~fidL~~kll~AGy~ten--~---ry~~~~lGtpqgsvvspil~nifL~~LD  437 (796)
T KOG4768|consen  363 IEVDLKKCFDTIPHDELIIELQKRIKDKGFIDLNYKLLRAGYTTEN--A---RYHVEFLGTPQGSVVSPILCNIFLRELD  437 (796)
T ss_pred             EechHHHHhccccHHHHHHHHHHHHhhhhHHHHHHHHHhcCccccc--c---ceecccccccccccCCchhHHHHHHHHH
Confidence            5799999999999999999999988888889999988887664322  1   1122456999999999999999999998


Q ss_pred             HHHHh
Q psy17384        243 REWRI  247 (295)
Q Consensus       243 ~~~~~  247 (295)
                      +-++.
T Consensus       438 k~Len  442 (796)
T KOG4768|consen  438 KRLEN  442 (796)
T ss_pred             HHHHH
Confidence            77665

>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family

Probab=95.09  E-value=0.026  Score=40.62  Aligned_cols=25  Identities=36%  Similarity=0.349  Sum_probs=23.6

Q ss_pred             ccCCCCCchHhHHHHHHHHHHHHHh
Q psy17384        223 VRQGDGLSPLLFNCVLEKVIREWRI  247 (295)
Q Consensus       223 ~~Qg~~lsp~lF~~~~~~l~~~~~~  247 (295)
                      +|||.++||.+|++++..+.+.+..
T Consensus        12 lPqG~~~Sp~l~~~~~~~l~~~~~~   36 (98)
T cd00304          12 LPQGSPLSPALANLYMEKLEAPILK   36 (98)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988765

An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.

>PF14961 BROMI: Broad-minded protein

Probab=93.82  E-value=0.43  Score=48.79  Aligned_cols=141  Identities=13%  Similarity=0.192  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHhhcCCCccccCchHHHHHH-HHhcCCHHHHHHHHHHHhhccc------hhhhc---ccC---hHhH---
Q psy17384         32 NTLHYMLASYVSYNTRISYVQGMSYICALF-ILNISTAYEAFVCFCNFLNKSV------FYVFY---SLN---IRMM---   95 (295)
Q Consensus        32 ~~L~~IL~~~~~~~p~igY~QGm~~i~~~l-l~~~~~e~~af~~~~~l~~~~~------~~~~~---~~~---~~~~---   95 (295)
                      ++-.+|+..|..+.+.-+| .|..-.++.+ ++...|.+.+...+.++.....      ++-..   .+.   ..++   
T Consensus      1084 ~s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~ 1162 (1296)
T PF14961_consen 1084 KSSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPV 1162 (1296)
T ss_pred             cchhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCch
Confidence            4445566666666666555 4777555554 4444667777666555443211      01001   111   0111   


Q ss_pred             -HHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHhHHHHHhcc
Q psy17384         96 -QAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDS  173 (295)
Q Consensus        96 -~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l~i~kafd~  173 (295)
                       -.....++.+++...|.++.-|...|+.|...+.+|+.-+|=..+++..+..-.-..+..|..+-++++++++|..+.
T Consensus      1163 ~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~ 1241 (1296)
T PF14961_consen 1163 YFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQP 1241 (1296)
T ss_pred             hhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhH
Confidence             234578999999999999999999999999999999999999999999888888888888999888899999999877

>COG3344 Retron-type reverse transcriptase [DNA replication, recombination, and repair]

Probab=80.17  E-value=5.4  Score=35.61  Aligned_cols=81  Identities=27%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             hHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHH
Q psy17384        162 RAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKV  241 (295)
Q Consensus       162 ~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l  241 (295)
                      .+-.++.+.|++++|..++..+...--+.....++...+-......     ....-....|++||.++||++-|+.+...
T Consensus       183 ~~~~di~~~fd~~~h~~ll~~~~~~i~~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~~q~~~vs~~l~n~~l~~~  257 (328)
T COG3344         183 VYDRDIKKCFDSINHKLLLYALDVTISDKLVLLLLGRILIAGYKTK-----FNLKKSKEKGTPQGGLVSPILVNIKLSKL  257 (328)
T ss_pred             EEeehHHHHhcccCHHHHHHHhHhhhcchHHHHHHHHHHHccccee-----ecccccccccCCCCCccCchhhhhhhhhh
Confidence            3568899999999999999999887666655544433333322211     11112267899999999999999998888


Q ss_pred             HHHHHh
Q psy17384        242 IREWRI  247 (295)
Q Consensus       242 ~~~~~~  247 (295)
                      .+.++.
T Consensus       258 ~~~~~~  263 (328)
T COG3344         258 DNELRN  263 (328)
T ss_pred             hHHHHH
Confidence            877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
2qq8_A	334	Crystal Structure Of The Putative Rabgap Domain Of		6e-47
3qyb_A	301	X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab		9e-11
3hzj_A	310	Crystal Structure Of The Rabgap Domain Of The Rabga		3e-10
3qye_A	331	Crystal Structure Of Human Tbc1d1 Rabgap Domain Len		4e-09

>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334

Iteration: 1
 Score =  184 bits (467), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Query: 4   DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
           + ++  I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ IL
Sbjct: 107 EASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLIL 166
Query: 64  NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT 123
           N+ TA +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LT
Sbjct: 167 NLDTA-DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLT 225
Query: 124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
           PD+YL+DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL   K ++ I
Sbjct: 226 PDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 276

>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 10  IRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTA 68
           I +D+ RTFP    F  + GP   +L  +L +Y   +  + Y QG+S++  + +L++S  
Sbjct: 97  ILVDLGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEE 156
Query: 69  YEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYL 128
            +AF      +    F   Y  ++  +Q      + L       L+ H     ++P LY 
Sbjct: 157 -QAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYA 215
Query: 129 LDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI--DRETLFNILE 184
             W  TLF+    L  V +++D++   G   IF+ AL    + +++  + E+  NI+E
Sbjct: 216 APWFLTLFASQFSLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECESFENIVE 273

>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 2/157 (1%)
Query: 10  IRLDISRTFPHLCLFQNEG-PYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTA 68
           I  DI RTFP    F++ G     +L+ +  +Y  Y+  I Y QG S++ A+ +L+    
Sbjct: 73  ITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHXPEE 132
Query: 69  YEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYL 128
            +AF               Y  N   +   +     L +  LP LH HF    L    Y 
Sbjct: 133 -QAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXYA 191
Query: 129 LDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
             W  TLF+    L  V  I DL++ +G   IF  AL
Sbjct: 192 SQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFHVAL 228

>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 2/166 (1%)
Query: 10  IRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTA 68
           I +D+ RTFP    F  + G    +L+ +L +Y   +  + Y QG+S++  + +L++S  
Sbjct: 107 ILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEE 166
Query: 69  YEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYL 128
            EAF      +        Y  ++ ++Q      + L       L+ H     + P LY 
Sbjct: 167 -EAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYA 225
Query: 129 LDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
             W  T+F+    L  V +++D++   G   IF+ AL    ++  +
Sbjct: 226 APWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPL 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
2qq8_A	334	TBC1 domain family member 14; structural genomics	1e-52
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	3e-38
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	5e-30
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	6e-23
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	1e-22
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	5e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score =  174 bits (442), Expect = 1e-52
 Identities = 82/160 (51%), Positives = 113/160 (70%), Gaps = 1/160 (0%)

Query: 6   TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
           ++  I+LDISRTFP+LC+FQ  GPY++ LH +L +Y  Y   + YVQGMS+I A+ ILN+
Sbjct: 109 SLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL 168

Query: 66  STAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPD 125
            TA +AF+ F N LNK     F+ ++  +M  Y+A +   F+ NLPKL  HF    LTPD
Sbjct: 169 DTA-DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPD 227

Query: 126 LYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
           +YL+DWI+TL+SK++ LDL C+IWD+  RDGE F+FR AL
Sbjct: 228 IYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTAL 267

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score =  135 bits (343), Expect = 3e-38
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 2/158 (1%)

Query: 9   QIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIST 67
            I  DI RTFP    F++  G    +L+ +  +Y  Y+  I Y QG S++ A+ +L++  
Sbjct: 72  VITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPE 131

Query: 68  AYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLY 127
             +AF      +        Y  N   +   +     L +  LP LH HF    L   +Y
Sbjct: 132 E-QAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMY 190

Query: 128 LLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
              W  TLF+    L +V  I DL++ +G   IF  AL
Sbjct: 191 ASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVAL 228

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score =  114 bits (288), Expect = 5e-30
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 7/207 (3%)

Query: 9   QIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIST 67
            I +D+ RTFP    F  + G    +L+ +L +Y   +  + Y QG+S++  + +L++S 
Sbjct: 106 AILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSE 165

Query: 68  AYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLY 127
             EAF      +        Y  ++ ++Q      + L       L+ H     + P LY
Sbjct: 166 E-EAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLY 224

Query: 128 LLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALD-FKKAYDSI----DRETLFNI 182
              W  T+F+    L  V +++D++   G   IF+ AL         I    + ET+ + 
Sbjct: 225 AAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDF 284

Query: 183 LEEYGADAKTVAIIKESLQATKSKIKF 209
           ++    +   V + K   Q  +  I  
Sbjct: 285 IKSTLPNLGLVQMEKTINQVFEMDIAK 311

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score = 96.6 bits (240), Expect = 6e-23
 Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 31/185 (16%)

Query: 5   NTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILN 64
            T  QI +DI RT PH+ L+Q +    N+L  +L  +   +    YVQG++ +   F   
Sbjct: 85  PTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFET 143

Query: 65  ISTAY----------------------------EAFVCFCNFLNKSVFYVFYSLNIRMMQ 96
             T Y                            + F C    L +      Y      + 
Sbjct: 144 FLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITD--NYIHGQPGIL 201

Query: 97  AYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDG 156
                 + L K     L+ HF +  +    +   W+  L  +   +  V ++WD  + + 
Sbjct: 202 RQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261

Query: 157 EVFIF 161
              + 
Sbjct: 262 SQEVT 266

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score = 95.0 bits (236), Expect = 1e-22
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 28/178 (15%)

Query: 6   TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
           T  QI +DI R  P   + Q           +L  +   +    YVQG++ +   F +  
Sbjct: 104 TYRQIHIDIPRMSPEALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVF 161

Query: 66  STAY------------------------EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYAT 101
              Y                        + + C    L+       Y+     +Q     
Sbjct: 162 ICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDN--YTFAQPGIQMKVKM 219

Query: 102 YNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVF 159
             +L      ++HRH     +    +   W+  L  + + L    ++WD    + + F
Sbjct: 220 LEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF 277

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score = 78.5 bits (193), Expect = 5e-17
 Identities = 18/160 (11%), Positives = 43/160 (26%), Gaps = 10/160 (6%)

Query: 6   TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
            +  +R     T       +        L    +  +         +    I       +
Sbjct: 92  ALKVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPLEP-----DDEVFLAIAKAMEEMV 146

Query: 66  STAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPD 125
             + + +     F+N+      Y  ++  +   +            +L  H   C   P 
Sbjct: 147 EDSVDCYWITRRFVNQ--LNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPK 201

Query: 126 LYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
           L    W    F+  +    + ++WD V+      +   A+
Sbjct: 202 LPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 241

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 68/305 (22%)

Query: 2   LYDNTITQIRLDISRTFPHL----CLFQNEGPYYNTLHYM-------LASYVSYNTRISY 50
           LY++     + ++SR  P+L     L +        +  +       +A  V  + ++  
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-- 176

Query: 51  VQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNL 110
              M +   +F LN+               ++V  +   L  ++   + +  +      L
Sbjct: 177 QCKMDF--KIFWLNLKNCNSP---------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 111 P------KLHRHFHSCGLTPDLYLLD--WIYTLFSKAMGLDLVCKIWDLVM-RDGEVFIF 161
                  +L R   S      L +L        +  A   +L CKI  L+  R  +V  F
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-NAF--NLSCKI--LLTTRFKQVTDF 280

Query: 162 RAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKT 221
            +A                   E      K +    + L               P E+ T
Sbjct: 281 LSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------PREVLT 324

Query: 222 GVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFK-SIAQMSVSIY 280
                   +P   + + E  IR+             K  +      + + S+  +  + Y
Sbjct: 325 T-------NPRRLSIIAES-IRDGLATWDN-----WKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 281 RKSYE 285
           RK ++
Sbjct: 372 RKMFD 376

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
2qq8_A	334	TBC1 domain family member 14; structural genomics	100.0
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	100.0
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	100.0
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	100.0
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	100.0
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	99.88
3kyl_A	596	Telomerase reverse transcriptase; reverse transcri	98.57

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=296.14  Aligned_cols=194  Identities=43%  Similarity=0.873  Sum_probs=177.9

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      ++..+||++||.||+|++++|+.++++++.|+|||.+|+.+||++||||||++|||+|+++++ |++|||||+++|++..
T Consensus       107 ~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~-E~~aF~~~~~l~~~~~  185 (334)
T 2qq8_A          107 EASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLD-TADAFIAFSNLLNKPC  185 (334)
T ss_dssp             CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSC-HHHHHHHHHHHHTSHH
T ss_pred             hhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCC-HHHHHHHHHHHHHhhh
Confidence            356799999999999999999987778999999999999999999999999999999999998 9999999999999877


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA  163 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~  163 (295)
                      +..+|.++.+++...+..++.+++..+|+|++||.+.|+.|..|+.+|++++|++++|++.+.||||.++.+|..+++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~v  265 (334)
T 2qq8_A          186 QMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRT  265 (334)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            77889888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcc----cChHHHHHHHHHhCCCchhHHHHHH
Q psy17384        164 ALDFKKAYDS----IDRETLFNILEEYGADAKTVAIIKE  198 (295)
Q Consensus       164 ~l~i~kafd~----v~~~~l~~~L~~~g~~~~~~~~I~~  198 (295)
                      ++++++.+++    .+.+.++..|++++-.-+.-..+..
T Consensus       266 alaiL~~~~~~Ll~~d~~~il~~L~~lp~~~d~~~l~~~  304 (334)
T 2qq8_A          266 ALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELFAS  304 (334)
T ss_dssp             HHHHHHHTHHHHHTCCHHHHHHHHHSCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCCCcCCHHHHHHH
Confidence            9999999876    6888899999877654333344443

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=279.42  Aligned_cols=179  Identities=27%  Similarity=0.480  Sum_probs=168.7

Q ss_pred             hhHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          5 NTITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      +..+||++||.||+|++++|+.. +.+++.|+|||.+|+.++|++||||||++|||+|+++++ |++||||++++|++..
T Consensus        68 ~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~-e~~aF~~l~~l~~~~~  146 (310)
T 3hzj_A           68 AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMP-EEQAFCVLVKIMYDYG  146 (310)
T ss_dssp             TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSC-HHHHHHHHHHHHHTSC
T ss_pred             CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCC-HHHHHHHHHHHHhccc
Confidence            56789999999999999999975 467999999999999999999999999999999999998 9999999999999877


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA  163 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~  163 (295)
                      ..++|.++.+++...+..++.+++..+|+|++||.+.|+.|..|+.+|++++|++++|++.+.|+||.++.+|..+++++
T Consensus       147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v  226 (310)
T 3hzj_A          147 LRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHV  226 (310)
T ss_dssp             GGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHH
Confidence            78899988899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcc----cChHHHHHHHH
Q psy17384        164 ALDFKKAYDS----IDRETLFNILE  184 (295)
Q Consensus       164 ~l~i~kafd~----v~~~~l~~~L~  184 (295)
                      ++++++.+++    .+.+.++..++
T Consensus       227 ~lail~~~~~~Ll~~d~~~~l~~l~  251 (310)
T 3hzj_A          227 ALALLKTSKEDLLQADFEGALKFFR  251 (310)
T ss_dssp             HHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999998876    68888888875

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=100.00  E-value=1.2e-37  Score=277.30  Aligned_cols=181  Identities=23%  Similarity=0.432  Sum_probs=170.6

Q ss_pred             hhHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384          5 NTITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV   83 (295)
Q Consensus         5 ~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~   83 (295)
                      ...+||++||.||+|++++|+.. +.+++.|+|||.+|+.++|++||||||++|||+|+++++ |++|||||++++++..
T Consensus       102 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~-E~~aF~~l~~l~~~~~  180 (331)
T 3qye_A          102 SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS-EEEAFKMLKFLMFDMG  180 (331)
T ss_dssp             TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC-HHHHHHHHHHHHTTTC
T ss_pred             CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh-HHHHHHHHHHHHHhcC
Confidence            45789999999999999999975 578999999999999999999999999999999999998 9999999999999876


Q ss_pred             hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384         84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA  163 (295)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~  163 (295)
                      ...+|.++..++...+..++.+++..+|+|++||.+.|+.|..|+.+|++++|++.+|++.+.|+||.++.+|..+++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~v  260 (331)
T 3qye_A          181 LRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKV  260 (331)
T ss_dssp             GGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             chhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcc----c-ChHHHHHHHHHh
Q psy17384        164 ALDFKKAYDS----I-DRETLFNILEEY  186 (295)
Q Consensus       164 ~l~i~kafd~----v-~~~~l~~~L~~~  186 (295)
                      ++++++.+++    . +.+.++..|++.
T Consensus       261 alaiL~~~~~~ll~~~~~~~il~~l~~~  288 (331)
T 3qye_A          261 ALSLLGSHKPLILQHENLETIVDFIKST  288 (331)
T ss_dssp             HHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence            9999999876    2 788899998873

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=100.00  E-value=1.1e-36  Score=276.47  Aligned_cols=183  Identities=21%  Similarity=0.321  Sum_probs=166.9

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC-----------------
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS-----------------   66 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~-----------------   66 (295)
                      ++..+||++||.||+|++++|+.+ .+++.|+|||.+|+.+||++||||||++|+++|+.++.                 
T Consensus        84 ~~~~~qI~~Dv~RT~p~~~~F~~~-~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~  162 (396)
T 1fkm_A           84 IPTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDP  162 (396)
T ss_dssp             HHHHHHHHHHGGGSSTTSGGGGSH-HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCG
T ss_pred             HHHHHHHHHHhhhhCCCcccccCc-hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccch
Confidence            356789999999999999999875 46999999999999999999999999999999998641                 


Q ss_pred             -C----------HHHHHHHHHHHhhccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHH
Q psy17384         67 -T----------AYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTL  135 (295)
Q Consensus        67 -~----------e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~l  135 (295)
                       +          |++|||||+++|++.  ..+|.++.+++...+..++.+++..+|+|++||++.|+.|..|+.+|++++
T Consensus       163 ~~~l~~~~~~~~E~daF~~f~~lm~~~--~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~L  240 (396)
T 1fkm_A          163 STYMVDEQITDLEADTFWCLTKLLEQI--TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL  240 (396)
T ss_dssp             GGTCCHHHHHHHHHHHHHHHHHHHGGG--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTT
T ss_pred             hhccchhhhhhhHHHHHHHHHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence             2          899999999999984  578888889999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHhhcccccc-----------------------------------------------------------
Q psy17384        136 FSKAMGLDLVCKIWDLVMRDG-----------------------------------------------------------  156 (295)
Q Consensus       136 f~~~l~~~~~~riwD~~~~~g-----------------------------------------------------------  156 (295)
                      |++++|++.+.||||.++.+|                                                           
T Consensus       241 F~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (396)
T 1fkm_A          241 LMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMR  320 (396)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred             HHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcc
Confidence            999999999999999999988                                                           


Q ss_pred             ----hhhHHhHHhHHHHHhcc----cChHHHHHHHHHhCCC
Q psy17384        157 ----EVFIFRAALDFKKAYDS----IDRETLFNILEEYGAD  189 (295)
Q Consensus       157 ----~~~l~~~~l~i~kafd~----v~~~~l~~~L~~~g~~  189 (295)
                          ..++++++++++..+++    .|.+.++..|++++..
T Consensus       321 ~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~  361 (396)
T 1fkm_A          321 QSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTK  361 (396)
T ss_dssp             --CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCC
Confidence                25778899999999877    5889999999987664

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=100.00  E-value=6.4e-37  Score=274.07  Aligned_cols=183  Identities=17%  Similarity=0.309  Sum_probs=164.9

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC-----------------
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS-----------------   66 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~-----------------   66 (295)
                      .+..+||++||.||+|+ ++|++. .+++.|+|||.+|+.+||++||||||++||++++.++.                 
T Consensus       102 ~~~~~~I~~Dv~RT~p~-~~F~~~-~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l  179 (345)
T 2qfz_A          102 QDTYRQIHIDIPRMSPE-ALILQP-KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGV  179 (345)
T ss_dssp             HHHHHHHHHHGGGCSCH-HHHTSH-HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTS
T ss_pred             HHHHHHHHHhCcccCCc-cccCCc-hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhh
Confidence            35789999999999999 999875 35889999999999999999999999999999998653                 


Q ss_pred             -------CHHHHHHHHHHHhhccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhh
Q psy17384         67 -------TAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKA  139 (295)
Q Consensus        67 -------~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~  139 (295)
                             +|++|||||+++|++.  ..+|..+.+++...+..++.+++..+|+|++||++.|+.|..|+.+|++++|+++
T Consensus       180 ~~~~~~~~E~daF~~f~~lm~~~--~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~  257 (345)
T 2qfz_A          180 PAEVLCNIEADTYWCMSKLLDGI--QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMRE  257 (345)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTS--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTT
T ss_pred             hhhhhhhHHHHHHHHHHHHHHcc--ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHccc
Confidence                   2999999999999985  5788888899999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHhhcccccchh---hHHhHHhHHHHHhcc-----cChHHHHHHHHHhCCCc
Q psy17384        140 MGLDLVCKIWDLVMRDGEV---FIFRAALDFKKAYDS-----IDRETLFNILEEYGADA  190 (295)
Q Consensus       140 l~~~~~~riwD~~~~~g~~---~l~~~~l~i~kafd~-----v~~~~l~~~L~~~g~~~  190 (295)
                      +|++.+.|+||.++.+|..   +++++++++++.+++     .+.+.++..|++++...
T Consensus       258 ~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~  316 (345)
T 2qfz_A          258 VPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAH  316 (345)
T ss_dssp             SCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTT
T ss_pred             CCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcC
Confidence            9999999999999999976   567889998887755     57888888888876653

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=100.00  E-value=2.8e-37  Score=270.09  Aligned_cols=191  Identities=15%  Similarity=0.224  Sum_probs=167.5

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCC---CCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQN---EGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLN   80 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~---~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~   80 (295)
                      .+..+||++||.||+|+++.|..   .+.+++.|+|||.+|+.+||++|||||||+||++++++++ |++||||++++++
T Consensus        80 ~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~-e~~aF~~l~~l~~  158 (292)
T 4hl4_A           80 SKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVG-ERLATSLVEKLST  158 (292)
T ss_dssp             CTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred             chhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence            46789999999999999988854   2456789999999999999999999999999999999998 9999999999999


Q ss_pred             ccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhh-hhHHHHHhhcccccchhh
Q psy17384         81 KSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMG-LDLVCKIWDLVMRDGEVF  159 (295)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~-~~~~~riwD~~~~~g~~~  159 (295)
                      +.. +++|.++..++...+..++.+++..+|+|++||++.++ +.+|+.+|++|+|++++| ++.+.|+||.++.+|..+
T Consensus       159 ~~l-~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~  236 (292)
T 4hl4_A          159 HHL-RDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLM  236 (292)
T ss_dssp             TTT-TGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTH
T ss_pred             HHH-HHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcH
Confidence            754 57889888888888999999999999999999999999 469999999999999996 999999999999999999


Q ss_pred             HHhHHhHHHHHhcc------cChHHHHHHHHHhCCCchhHHHHH
Q psy17384        160 IFRAALDFKKAYDS------IDRETLFNILEEYGADAKTVAIIK  197 (295)
Q Consensus       160 l~~~~l~i~kafd~------v~~~~l~~~L~~~g~~~~~~~~I~  197 (295)
                      ++++++++++..++      .+.+.+...|++++-+.+.-.++.
T Consensus       237 ~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~  280 (292)
T 4hl4_A          237 PIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLIS  280 (292)
T ss_dssp             HHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHH
Confidence            99999999998855      267777788887765444444443

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=175.97  Aligned_cols=134  Identities=13%  Similarity=0.242  Sum_probs=120.9

Q ss_pred             cccCchHHHHHHHHhcCCHHHHHHHHHHHhhccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHH
Q psy17384         50 YVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL  129 (295)
Q Consensus        50 Y~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~  129 (295)
                      ++|||..||++++..+.+|++|||||+++|++.  .++|.++.++++..   ++.+++..+|+|++||++.|+.|.+++.
T Consensus       131 ~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l--~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~  205 (294)
T 3qwl_A          131 DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQL--NTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYD  205 (294)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH--HTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHH
T ss_pred             chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHH
Confidence            469999999999998888999999999999983  57888888888764   4899999999999999999999888888


Q ss_pred             HHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHhHHHHHhcc----cCh-HHHHHHHHHhCC
Q psy17384        130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDS----IDR-ETLFNILEEYGA  188 (295)
Q Consensus       130 ~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l~i~kafd~----v~~-~~l~~~L~~~g~  188 (295)
                      +||+++|++++|++.++|+||.++.+|.++++++++++++.+++    .+. +.+++.|++++.
T Consensus       206 rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~  269 (294)
T 3qwl_A          206 LWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQ  269 (294)
T ss_dssp             HHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCS
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999999877    455 788888887664

>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A

Probab=98.57  E-value=7.9e-09  Score=93.31  Aligned_cols=81  Identities=19%  Similarity=0.326  Sum_probs=66.6

Q ss_pred             HhHHhHHHHHhcccChHHHHHHHHHhCC---CchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHH
Q psy17384        161 FRAALDFKKAYDSIDRETLFNILEEYGA---DAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCV  237 (295)
Q Consensus       161 ~~~~l~i~kafd~v~~~~l~~~L~~~g~---~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~  237 (295)
                      +.+-+||.+.||+++|+.|++.+...+.   +.....||+..+...-  +..+|.   ....+.|+|||+++||+|-|+|
T Consensus       246 yVVDaDIkkFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk~Lka~L--V~igGk---~y~qekGTPQGGVISPLLANIY  320 (596)
T 3kyl_A          246 YGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQF--VAFRRK---IYKWNHGLLQGDPLSGCLCELY  320 (596)
T ss_dssp             EEEEEEESSTTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHHHHHCEE--EESSSS---EEEECSSSCBTCTTHHHHHHHH
T ss_pred             EEEeeEHHhhCCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhhCe--EEECCE---EEecCCcccCCcchhHHHHHHH
Confidence            4467999999999999999999999875   5667788888777543  444443   3457899999999999999999


Q ss_pred             HHHHHHHHH
Q psy17384        238 LEKVIREWR  246 (295)
Q Consensus       238 ~~~l~~~~~  246 (295)
                      +..+-+.+.
T Consensus       321 LheLDkel~  329 (596)
T 3kyl_A          321 MAFMDRLYF  329 (596)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHH
Confidence            999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1fkma2	188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	4e-11
d1fkma1	194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	1e-09

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (141), Expect = 4e-11
 Identities = 19/171 (11%), Positives = 43/171 (25%), Gaps = 16/171 (9%)

Query: 95  MQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMR 154
           +       + L K     L+ HF +  +    +   W+  L  +   +  V ++WD  + 
Sbjct: 5   ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 64

Query: 155 DGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDIS 214
           +    +  +              T   +           + +  +               
Sbjct: 65  ETSQEVTSSYSMSSNDIKPPVTPTEPRVA----------SFVTPTKDFQSPTTALSNMTP 114

Query: 215 NPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEGS-----KFLTKLP 260
           N     +G  +   L+           + +W     E        FL   P
Sbjct: 115 NNAVEDSGKMRQSSLNEFHVFVCAA-FLIKWSDQLMEMDFQETITFLQNPP 164

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 4   DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
             T  QI +DI RT PH+ L+Q +    N+L  +L  +   +    YVQG++ +   F  
Sbjct: 83  IPTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFE 141

Query: 64  NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQA 97
              T Y       +   K          I  ++A
Sbjct: 142 TFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.83
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.47

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.3e-21  Score=158.73  Aligned_cols=78  Identities=28%  Similarity=0.436  Sum_probs=70.0

Q ss_pred             hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC-----------------
Q psy17384          4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS-----------------   66 (295)
Q Consensus         4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~-----------------   66 (295)
                      .+..+||++||.||+|++++|+++ .+++.|+|||.+|+.+||++|||||||+|||+|+.++.                 
T Consensus        83 ~~~~~~I~~Dv~RT~~~~~~f~~~-~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~  161 (194)
T d1fkma1          83 IPTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDP  161 (194)
T ss_dssp             HHHHHHHHHHGGGSSTTSGGGGSH-HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCG
T ss_pred             hHHHHHHHHHHHhcCCcccccccc-hhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcch
Confidence            356789999999999999999875 45899999999999999999999999999999998652                 


Q ss_pred             -----------CHHHHHHHHHHHhhcc
Q psy17384         67 -----------TAYEAFVCFCNFLNKS   82 (295)
Q Consensus        67 -----------~e~~af~~~~~l~~~~   82 (295)
                                 .|++|||||+++|++.
T Consensus       162 ~~~~~~~~~~~~Ead~F~~f~~lm~~i  188 (194)
T d1fkma1         162 STYMVDEQITDLEADTFWCLTKLLEQI  188 (194)
T ss_dssp             GGTCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhh
Confidence                       2889999999999874

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.6e-14  Score=113.59  Aligned_cols=67  Identities=15%  Similarity=0.283  Sum_probs=63.8

Q ss_pred             ChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccch
Q psy17384         91 NIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGE  157 (295)
Q Consensus        91 ~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~  157 (295)
                      +++|+...+..++.+++..+|+|++||++.|+.+..|+.+|++++|++++|++.+.|+||.++++|.
T Consensus         1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~   67 (188)
T d1fkma2           1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETS   67 (188)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCc
Confidence            4679999999999999999999999999999999999999999999999999999999999998754