Psyllid ID: psy1740

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----

MTCSIHPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEEANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTRPSICSYGPHPSTLPLYLS

cccccccHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccEEccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHccccccHHcccccccccccHHHccccHHccccccccccccccccccccccccccccccccccccccccc

cccccHHHHHHHHHHHHHHHHccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHEEHHHHcccccccccccHHHHHHHHHcccEcccccHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccEEEcccEEEEcccccHHccccccccccccccccccccEEcc

mtcsihpmvYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRKIDekrdqvssipesdpalcKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLgfadplasgmfrrtqvfvgghipptpphiiPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVhihpfidgngrTSRLLMNLILMqagfppviipkherhtikstpgtnieALGTISAAIEMKKMGKIDKALKLFEHAFaiaphnpdvlNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDekrdqvssipesdpalcKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEeanrgdirpfvrfiapvtikfsrrpteatfgrssasllnartrpsicsygphpstlplyls

MTCSIHPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFlrkidekrdqvssipesdpalCKAKKESYFQHIYHTvgiegnsmSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERhtikstpgtnieALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFlrkidekrdqvssipesdpalCKAKKESYFQHIYHTvgiegnsmSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEeanrgdirpfVRFIAPvtikfsrrpteatfgrssasllnartrpsicsygphpstlplyls

MTCSIHPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGhipptpphiipLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEEANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTRPSICSYGPHPSTLPLYLS

***SIHPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRK******************CKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRK******************CKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEEANRGDIRPFVRFIAPVTIKFSR**************************************

***SIHPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAI*GKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEEANRGDIRPFVRFIAPVTIKF***************LLNARTRPSICSYGPHPSTLPLYLS

MTCSIHPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEK*************LCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEK*************LCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEEANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTRPSICSYGPHPSTLPLYLS

*TCSIHPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEEANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTRPSICSYGPHPSTLPLYLS

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		505	2.2.26 [Sep-21-2011]
B4P0E1		495	Adenosine monophosphate-p	N/A	N/A	0.457	0.466	0.646	3e-86
B0W429		500	Adenosine monophosphate-p	N/A	N/A	0.459	0.464	0.650	4e-86
Q17A75		499	Adenosine monophosphate-p	N/A	N/A	0.459	0.464	0.642	4e-86
Q8SWV6		492	Adenosine monophosphate-p	yes	N/A	0.455	0.467	0.649	5e-86
B4I1V5		492	Adenosine monophosphate-p	N/A	N/A	0.455	0.467	0.649	5e-86
B4Q4M7		492	Adenosine monophosphate-p	N/A	N/A	0.455	0.467	0.649	7e-86
B3MK83		497	Adenosine monophosphate-p	N/A	N/A	0.455	0.462	0.653	1e-85
Q29JP8		508	Adenosine monophosphate-p	yes	N/A	0.455	0.452	0.645	1e-85
B4GJC1		508	Adenosine monophosphate-p	N/A	N/A	0.455	0.452	0.645	1e-85
B3N5J3		495	Adenosine monophosphate-p	N/A	N/A	0.455	0.464	0.645	2e-85

>sp\|B4P0E1\|FICD_DROYA Adenosine monophosphate-protein transferase FICD homolog OS=Drosophila yakuba GN=GE13868 PE=3 SV=1	Back alignment and function desciption

 Score =  319 bits (818), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 150/232 (64%), Positives = 188/232 (81%), Gaps = 1/232 (0%)

Query: 19  ALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQ 78
           AL   P + +AL NRQRTA VV+ LD   L+ +D KRD +S+I ES+ AL +AKKE+YFQ
Sbjct: 182 ALTISPSNSEALANRQRTADVVQTLDERRLQSLDSKRDALSAIHESNGALRRAKKEAYFQ 241

Query: 79  HIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDI 138
           HIYH+VGIEGN+M+LAQTRSI+ETRMA+ GKSI EHNEILG+DLA+KYIN +LV ++ DI
Sbjct: 242 HIYHSVGIEGNTMTLAQTRSILETRMAVDGKSIDEHNEILGMDLAMKYINASLVQKI-DI 300

Query: 139 TVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALR 198
           T+ D+LE+H+RVLG  DP+  G FRR QV+VGGH+PP P  +  LM  F  WLNS+ +  
Sbjct: 301 TIKDILELHRRVLGHVDPIEGGEFRRNQVYVGGHVPPGPGDLALLMQRFERWLNSEHSST 360

Query: 199 MHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERH 250
           +HPV +AA+AHYKLVHIHPFIDGNGRTSRLLMN +LM+AG+PPVIIPK +R+
Sbjct: 361 LHPVNYAALAHYKLVHIHPFIDGNGRTSRLLMNTLLMRAGYPPVIIPKQQRN 412

Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins.
Drosophila yakuba (taxid: 7245)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: nEC: 1

>sp\|B0W429\|FICD_CULQU Adenosine monophosphate-protein transferase FICD homolog OS=Culex quinquefasciatus GN=CPIJ001789 PE=3 SV=1	Back alignment and function description

>sp\|Q17A75\|FICD_AEDAE Adenosine monophosphate-protein transferase FICD homolog OS=Aedes aegypti GN=AAEL005383 PE=3 SV=1	Back alignment and function description

>sp\|Q8SWV6\|FICD_DROME Adenosine monophosphate-protein transferase FICD homolog OS=Drosophila melanogaster GN=CG9523 PE=1 SV=1	Back alignment and function description

>sp\|B4I1V5\|FICD_DROSE Adenosine monophosphate-protein transferase FICD homolog OS=Drosophila sechellia GN=GM18629 PE=3 SV=1	Back alignment and function description

>sp\|B4Q4M7\|FICD_DROSI Adenosine monophosphate-protein transferase FICD homolog OS=Drosophila simulans GN=GD23409 PE=3 SV=1	Back alignment and function description

>sp\|B3MK83\|FICD_DROAN Adenosine monophosphate-protein transferase FICD homolog OS=Drosophila ananassae GN=GF14521 PE=3 SV=1	Back alignment and function description

>sp\|Q29JP8\|FICD_DROPS Adenosine monophosphate-protein transferase FICD homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21854 PE=3 SV=2	Back alignment and function description

>sp\|B4GJC1\|FICD_DROPE Adenosine monophosphate-protein transferase FICD homolog OS=Drosophila persimilis GN=GL25530 PE=3 SV=1	Back alignment and function description

>sp\|B3N5J3\|FICD_DROER Adenosine monophosphate-protein transferase FICD homolog OS=Drosophila erecta GN=GG10411 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		505
322801551		465	hypothetical protein SINV_80578 [Solenop	0.459	0.498	0.719	2e-96
328704839		445	PREDICTED: adenosine monophosphate-prote	0.469	0.532	0.700	2e-96
328791084		477	PREDICTED: adenosine monophosphate-prote	0.461	0.488	0.721	2e-95
380025659		477	PREDICTED: adenosine monophosphate-prote	0.461	0.488	0.721	2e-95
383863865		485	PREDICTED: adenosine monophosphate-prote	0.461	0.480	0.712	7e-95
340714210		487	PREDICTED: adenosine monophosphate-prote	0.455	0.472	0.712	9e-95
350417433		491	PREDICTED: adenosine monophosphate-prote	0.455	0.468	0.712	1e-94
340714208		491	PREDICTED: adenosine monophosphate-prote	0.455	0.468	0.712	1e-94
242015494		461	conserved hypothetical protein [Pediculu	0.459	0.503	0.715	2e-94
332026754		484	Adenosine monophosphate-protein transfer	0.459	0.479	0.711	2e-94

>gi\|322801551\|gb\|EFZ22212.1\| hypothetical protein SINV_80578 [Solenopsis invicta]	Back alignment and taxonomy information

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/232 (71%), Positives = 197/232 (84%)

Query: 19  ALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQ 78
           AL   P H  AL+N QRTA VVEELDR  LR+IDEKR+ +S+IP+++ AL +AKKE+YFQ
Sbjct: 163 ALTYEPNHEGALINNQRTARVVEELDRLMLRRIDEKRNTLSNIPDNNAALIRAKKEAYFQ 222

Query: 79  HIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDI 138
           HIYHTVGIEGN+M+LAQTR+IVETR A+ GKSI EHNEILGLD A+KYIN TLVNRVG I
Sbjct: 223 HIYHTVGIEGNTMNLAQTRAIVETRTAVSGKSIDEHNEILGLDAAMKYINATLVNRVGSI 282

Query: 139 TVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALR 198
           ++ D+LEIH+RVLG  DP+  G FRRTQV+VGGHIPP P +I  LM+EF+ WLNS+ A+R
Sbjct: 283 SIKDILEIHRRVLGHVDPIEGGQFRRTQVYVGGHIPPGPSNIHYLMEEFVLWLNSEQAIR 342

Query: 199 MHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERH 250
           MHPVR+AA+AHYKLVHIHPF DGNGRTSRLLMN+ILMQAG+PPVII K  RH
Sbjct: 343 MHPVRYAALAHYKLVHIHPFTDGNGRTSRLLMNMILMQAGYPPVIIHKQHRH 394

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|328704839\|ref\|XP_001943783.2\| PREDICTED: adenosine monophosphate-protein transferase FICD homolog [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|328791084\|ref\|XP_393224.2\| PREDICTED: adenosine monophosphate-protein transferase FICD homolog isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|380025659\|ref\|XP_003696586.1\| PREDICTED: adenosine monophosphate-protein transferase FICD homolog [Apis florea]	Back alignment and taxonomy information

>gi\|383863865\|ref\|XP_003707400.1\| PREDICTED: adenosine monophosphate-protein transferase FICD homolog [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340714210\|ref\|XP_003395624.1\| PREDICTED: adenosine monophosphate-protein transferase FICD homolog isoform 2 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350417433\|ref\|XP_003491420.1\| PREDICTED: adenosine monophosphate-protein transferase FICD homolog [Bombus impatiens]	Back alignment and taxonomy information

>gi\|340714208\|ref\|XP_003395623.1\| PREDICTED: adenosine monophosphate-protein transferase FICD homolog isoform 1 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|242015494\|ref\|XP_002428388.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212513000\|gb\|EEB15650.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|332026754\|gb\|EGI66863.1\| Adenosine monophosphate-protein transferase FICD-like protein [Acromyrmex echinatior]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		505
UNIPROTKB\|B4P0E1		495	GE13868 "Adenosine monophospha	0.457	0.466	0.629	1.7e-82
UNIPROTKB\|Q17A75		499	AAEL005383 "Adenosine monophos	0.459	0.464	0.625	7.4e-82
UNIPROTKB\|B3MK83		497	GF14521 "Adenosine monophospha	0.455	0.462	0.636	7.4e-82
UNIPROTKB\|B0W429		500	CPIJ001789 "Adenosine monophos	0.459	0.464	0.629	9.4e-82
FB\|FBgn0263278		492	Fic "Fic domain-containing pro	0.455	0.467	0.627	9.4e-82
UNIPROTKB\|B4I1V5		492	GM18629 "Adenosine monophospha	0.455	0.467	0.627	9.4e-82
UNIPROTKB\|B4Q4M7		492	GD23409 "Adenosine monophospha	0.455	0.467	0.627	9.4e-82
UNIPROTKB\|B3N5J3		495	GG10411 "Adenosine monophospha	0.455	0.464	0.623	3.2e-81
UNIPROTKB\|B4GJC1		508	GL25530 "Adenosine monophospha	0.455	0.452	0.627	5.1e-81
UNIPROTKB\|Q29JP8		508	GA21854 "Adenosine monophospha	0.455	0.452	0.627	5.1e-81

UNIPROTKB\|B4P0E1 GE13868 "Adenosine monophosphate-protein transferase FICD homolog" [Drosophila yakuba (taxid:7245)]	Back alignment and assigned GO terms

 Score = 753 (270.1 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 146/232 (62%), Positives = 182/232 (78%)

Query:    19 ALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQ 78
             AL   P + +AL NRQRTA VV+ LD   L+ +D KRD +S+I ES+ AL +AKKE+YFQ
Sbjct:   182 ALTISPSNSEALANRQRTADVVQTLDERRLQSLDSKRDALSAIHESNGALRRAKKEAYFQ 241

Query:    79 HIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDI 138
             HIYH+VGIEGN+M+LAQTRSI+ETRMA+ GKSI EHNEILG+DLA+KYIN +LV ++ DI
Sbjct:   242 HIYHSVGIEGNTMTLAQTRSILETRMAVDGKSIDEHNEILGMDLAMKYINASLVQKI-DI 300

Query:   139 TVADLLEIHKRVLGFADPLASGMFRRTQVFVGGXXXXXXXXXXXLMDEFIAWLNSDVALR 198
             T+ D+LE+H+RVLG  DP+  G FRR QV+VGG           LM  F  WLNS+ +  
Sbjct:   301 TIKDILELHRRVLGHVDPIEGGEFRRNQVYVGGHVPPGPGDLALLMQRFERWLNSEHSST 360

Query:   199 MHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERH 250
             +HPV +AA+AHYKLVHIHPFIDGNGRTSRLLMN +LM+AG+PPVIIPK +R+
Sbjct:   361 LHPVNYAALAHYKLVHIHPFIDGNGRTSRLLMNTLLMRAGYPPVIIPKQQRN 412

GO:0018117 "protein adenylylation" evidence=ISS

GO:0070733 "protein adenylyltransferase activity" evidence=ISS

UNIPROTKB\|Q17A75 AAEL005383 "Adenosine monophosphate-protein transferase FICD homolog" [Aedes aegypti (taxid:7159)]	Back alignment and assigned GO terms

UNIPROTKB\|B3MK83 GF14521 "Adenosine monophosphate-protein transferase FICD homolog" [Drosophila ananassae (taxid:7217)]	Back alignment and assigned GO terms

UNIPROTKB\|B0W429 CPIJ001789 "Adenosine monophosphate-protein transferase FICD homolog" [Culex quinquefasciatus (taxid:7176)]	Back alignment and assigned GO terms

FB\|FBgn0263278 Fic "Fic domain-containing protein" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|B4I1V5 GM18629 "Adenosine monophosphate-protein transferase FICD homolog" [Drosophila sechellia (taxid:7238)]	Back alignment and assigned GO terms

UNIPROTKB\|B4Q4M7 GD23409 "Adenosine monophosphate-protein transferase FICD homolog" [Drosophila simulans (taxid:7240)]	Back alignment and assigned GO terms

UNIPROTKB\|B3N5J3 GG10411 "Adenosine monophosphate-protein transferase FICD homolog" [Drosophila erecta (taxid:7220)]	Back alignment and assigned GO terms

UNIPROTKB\|B4GJC1 GL25530 "Adenosine monophosphate-protein transferase FICD homolog" [Drosophila persimilis (taxid:7234)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29JP8 GA21854 "Adenosine monophosphate-protein transferase FICD homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29JP8	FICD_DROPS	2, ., 7, ., 7, ., n, 1	0.6450	0.4554	0.4527	yes	N/A
Q8SWV6	FICD_DROME	2, ., 7, ., 7, ., n, 1	0.6493	0.4554	0.4674	yes	N/A
Q6ZM51	FICD_DANRE	2, ., 7, ., 7, ., n, 1	0.5670	0.4554	0.5122	yes	N/A
Q8BIX9	FICD_MOUSE	2, ., 7, ., 7, ., n, 1	0.5844	0.4514	0.4978	yes	N/A
B4F6I5	FICD_XENTR	2, ., 7, ., 7, ., n, 1	0.5670	0.4554	0.5156	yes	N/A
Q9BVA6	FICD_HUMAN	2, ., 7, ., 7, ., n, 1	0.5800	0.4554	0.5021	yes	N/A
Q6AY47	FICD_RAT	2, ., 7, ., 7, ., n, 1	0.5757	0.4554	0.5021	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	LOW CONFIDENCE prediction!
4th Layer	2.7.7.n1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		505
pfam02661		94	pfam02661, Fic, Fic/DOC family	3e-24
COG3177		348	COG3177, COG3177, Fic family protein [Function unk	4e-24
TIGR02613		186	TIGR02613, mob_myst_B, mobile mystery protein B	8e-11
COG2184		201	COG2184, Fic, Protein involved in cell division [C	3e-06
pfam13414		69	pfam13414, TPR_11, TPR repeat	1e-04
COG3063		250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	2e-04
cd00189		100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-04

>gnl\|CDD\|217170 pfam02661, Fic, Fic/DOC family	Back alignment and domain information

 Score = 96.3 bits (240), Expect = 3e-24
 Identities = 41/98 (41%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 137 DITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVA 196
            +T+ DLLEIH+ +L    P A G FR   V +       P  I   +DE   + + D  
Sbjct: 1   YLTLEDLLEIHRILLEDIGPWA-GEFRDVDVGLLESALARPEQIPAGLDELELYPDLD-- 57

Query: 197 LRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLIL 234
            R HP+  AA  H+    IHPF DGNGRT+RLL NL L
Sbjct: 58  -REHPLEKAAALHFGFAKIHPFRDGNGRTARLLANLFL 94

This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604. Length = 94

>gnl\|CDD\|225718 COG3177, COG3177, Fic family protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|131662 TIGR02613, mob_myst_B, mobile mystery protein B	Back alignment and domain information

>gnl\|CDD\|225095 COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|222112 pfam13414, TPR_11, TPR repeat	Back alignment and domain information

>gnl\|CDD\|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		505
KOG3824\|consensus		472		100.0
KOG3824\|consensus		472		100.0
TIGR02613		186	mob_myst_B mobile mystery protein B. Members of th	99.97
COG3177		348	Fic family protein [Function unknown]	99.96
PF02661		97	Fic: Fic/DOC family; InterPro: IPR003812 This entr	99.86
PRK10347		200	cell filamentation protein Fic; Provisional	99.69
PRK14052		387	effector protein; Provisional	99.66
COG2184		201	Fic Protein involved in cell division [Cell divisi	99.6
TIGR01550		121	DOC_P1 death-on-curing family protein. A similar r	99.08
COG3177		348	Fic family protein [Function unknown]	98.22
COG3654		132	Doc Prophage maintenance system killer protein [Ge	98.1
TIGR02613		186	mob_myst_B mobile mystery protein B. Members of th	98.0
PF13784		84	Fic_N: Fic/DOC family N-terminal; PDB: 3EQX_A.	97.98
PF13776		82	DUF4172: Domain of unknown function (DUF4172)	94.17
PF13784		84	Fic_N: Fic/DOC family N-terminal; PDB: 3EQX_A.	80.64

>KOG3824\|consensus	Back alignment and domain information

Probab=100.00  E-value=6.3e-59  Score=453.04  Aligned_cols=265  Identities=53%  Similarity=0.877  Sum_probs=250.3

Q ss_pred             CcchhhhhhhhhHhhhhCCCCcccccccccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhc
Q psy1740           6 HPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVG   85 (505)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~i~~~r~~l~~~p~~~~~l~~l~~e~~~~~i~~S~~   85 (505)
                      |-+.--|+.||.|||+++|+++.||+||.||.|+|+++|+.+|+.+|.+++.+..++.++.++++.++|.++.+||||.+
T Consensus       163 ~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~hiYHtva  242 (472)
T KOG3824|consen  163 HNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFLHIYHTVA  242 (472)
T ss_pred             hhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhheeee
Confidence            34455689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhcCCCCCCCCccccc
Q psy1740          86 IEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRT  165 (505)
Q Consensus        86 IEGn~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~i~~~l~~~~~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~  165 (505)
                      ||||++|+.||+.+++.+..++||+.++++||+++..|++||+-.+..+...+|.++|+++|+.+++.++|..+|+||+.
T Consensus       243 iegntlsl~~~R~ILEtrmavpGKSi~EhNEviGMdaAmkyiN~sLvski~~itI~DiLE~HRRVLG~vDPvEaGrfRtt  322 (472)
T KOG3824|consen  243 IEGNTLSLGQTRAILETRMAVPGKSIREHNEVIGMDAAMKYINCSLVSKIHDITIDDILEMHRRVLGNVDPVEAGRFRTT  322 (472)
T ss_pred             ecccccchHHHHHHHhhcccCCCcChHHhhhhhhHHHHHHHhhhHhhhhccceeHHHHHHHHHHHhcCCCcccccceeee
Confidence            99999999999999999999999999999999999999999999988877789999999999999999999999999999


Q ss_pred             cceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeecc
Q psy1740         166 QVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIP  245 (505)
Q Consensus       166 ~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~  245 (505)
                      ||++|+|+||.|.+|...|+++++|+|++.....||++.||++||.+++||||.||||||+|||||++|+++||||+.|.
T Consensus       323 QVyVG~hiPp~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraGyPPviip  402 (472)
T KOG3824|consen  323 QVYVGRHIPPSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAGYPPVIIP  402 (472)
T ss_pred             eEEecCCCCCChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcCCCCeeec
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCcccchhccHHHHHHH
Q psy1740         246 KHERHTIKSTPGTNIEALGTISAAIEM  272 (505)
Q Consensus       246 ~~~r~~Yy~aL~~~~e~~~~l~a~i~~  272 (505)
                      ++.|.+||-.|..+  +.|++..|+.+
T Consensus       403 keqRs~YYh~L~~A--NeGD~RPFvRf  427 (472)
T KOG3824|consen  403 KEQRSEYYHSLHVA--NEGDLRPFVRF  427 (472)
T ss_pred             HHHhhhHHHHHhhc--ccccchHHHHH
Confidence            99999999988753  34555555543

>KOG3824\|consensus	Back alignment and domain information

>TIGR02613 mob_myst_B mobile mystery protein B	Back alignment and domain information

>COG3177 Fic family protein [Function unknown]	Back alignment and domain information

>PF02661 Fic: Fic/DOC family; InterPro: IPR003812 This entry contains the Fic (filamentation induced by cAMP) protein and doc (death on curing) protein	Back alignment and domain information

>PRK10347 cell filamentation protein Fic; Provisional	Back alignment and domain information

>PRK14052 effector protein; Provisional	Back alignment and domain information

>COG2184 Fic Protein involved in cell division [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR01550 DOC_P1 death-on-curing family protein	Back alignment and domain information

>COG3177 Fic family protein [Function unknown]	Back alignment and domain information

>COG3654 Doc Prophage maintenance system killer protein [General function prediction only]	Back alignment and domain information

>TIGR02613 mob_myst_B mobile mystery protein B	Back alignment and domain information

>PF13784 Fic_N: Fic/DOC family N-terminal; PDB: 3EQX_A	Back alignment and domain information

>PF13776 DUF4172: Domain of unknown function (DUF4172)	Back alignment and domain information

>PF13784 Fic_N: Fic/DOC family N-terminal; PDB: 3EQX_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		505
3cuc_A		291	Crystal Structure Of A Fic Domain Containing Signal		8e-12
3n3u_A		299	Crystal Structure Of Ibpafic2 Length = 299		2e-06
4itr_A		316	Crystal Structure Of Ibpafic2-h3717a In Complex Wit		2e-05
3eqx_A		373	Crystal Structure Of A Fic Family Protein (So_4266)		2e-04

>pdb|3CUC|A Chain A, Crystal Structure Of A Fic Domain Containing Signaling Protein (Bt_2513) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.71 A Resolution Length = 291

Back alignment and structure

Iteration: 1

Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 24/191 (12%) Query: 81 YHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITV 140 Y++ +EGN+++ QT+ ++ G S+ ++ E ++ L+ I ++ +T Sbjct: 38 YNSNHLEGNTLTYGQTKLLLXFGETSGNASLKDYEEXKAHNVGLEXIKQEAQDKERPLTE 97 Query: 141 ADLLEIHKRVLGFADPLAS-----GMFRRTQVFVGGXXXXXXXXXXXLMDEF-------- 187 + + E+++ +L D + G R Q+ VG + F Sbjct: 98 SFIRELNRTIL-VQDYWKNAKTPDGQDIRXQIKVGEYKSRPNSVLTATGEVFSYASPEET 156 Query: 188 -------IAWLN--SDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAG 238 + W N +D + + PV AA+ HY+ + IHPF DGNGR +RLL+N +L + G Sbjct: 157 PAFXTSLVDWYNLEADKGI-LTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYG 215 Query: 239 FPPVIIPKHER 249 +P ++I ++ Sbjct: 216 YPXIVIHSEDK 226

PyMOL of 3cuc

>pdb|3N3U|A Chain A, Crystal Structure Of Ibpafic2 Length = 299

Back alignment and structure

>pdb|4ITR|A Chain A, Crystal Structure Of Ibpafic2-h3717a In Complex With Adenylylated Cdc42 Length = 316

Back alignment and structure

>pdb|3EQX|A Chain A, Crystal Structure Of A Fic Family Protein (So_4266) From Shewanella Oneidensis At 1.6 A Resolution Length = 373

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		505
3cuc_A		291	Protein of unknown function with A FIC domain; FIC	2e-63
3cuc_A		291	Protein of unknown function with A FIC domain; FIC	1e-15
3n3u_A		299	Ampylator IBPA, adenosine monophosphate-protein tr	1e-55
3n3u_A		299	Ampylator IBPA, adenosine monophosphate-protein tr	5e-10
3let_A		314	Adenosine monophosphate-protein transferase VOPS;	3e-25
3let_A		314	Adenosine monophosphate-protein transferase VOPS;	2e-04
2qc0_A		373	Uncharacterized protein; NP_719793.1, uncharacteri	9e-23
2f6s_A		201	Cell filamentation protein, putative; structural P	1e-22
3se5_A		164	Cell filamentation protein FIC-related protein; am	7e-17
2jk8_A		302	BEPA, putative cell filamentation protein (BEPA pr	8e-16
3shg_A		205	VBHT; ampylation, adenylylation, toxin-antitoxin c	2e-15
2g03_A		194	Hypothetical protein NMA0004; cell filamentation,	8e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	4e-05
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-06
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-05
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
3urz_A		208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3urz_A		208	Uncharacterized protein; tetratricopeptide repeats	6e-05
2e2e_A		177	Formate-dependent nitrite reductase complex NRFG;	7e-05
2gw1_A		514	Mitochondrial precursor proteins import receptor;	1e-04
3tax_A		723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
3tax_A		723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-04
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
3k9i_A		117	BH0479 protein; putative protein binding protein,	4e-04
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	5e-04
4g1t_A		472	Interferon-induced protein with tetratricopeptide	7e-04

>3cuc_A Protein of unknown function with A FIC domain; FIC protein family, structural genomics, joint center for ST genomics, JCSG; HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482} Length = 291	Back alignment and structure

 Score =  207 bits (528), Expect = 2e-63
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 21/224 (9%)

Query: 48  LRKIDEKRDQVSSIPESDP-ALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAI 106
           +  I +   +  S+    P  L +   +   +  Y++  +EGN+++  QT+ ++      
Sbjct: 4   ISNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETS 63

Query: 107 GGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFAD----------- 155
           G  S+ ++ E+   ++ L+ I     ++   +T + + E+++ +L               
Sbjct: 64  GNASLKDYEEMKAHNVGLEMIKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQD 123

Query: 156 ---PLASGMFRRTQVFVGG-----HIPPTPPHIIPLMDEFIAWLNSDVA-LRMHPVRFAA 206
               +  G ++     V           +P      M   + W N +     + PV  AA
Sbjct: 124 IRMQIKVGEYKSRPNSVLTATGEVFSYASPEETPAFMTSLVDWYNLEADKGILTPVELAA 183

Query: 207 IAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERH 250
           + HY+ + IHPF DGNGR +RLL+N +L + G+P ++I   ++ 
Sbjct: 184 LLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPMIVIHSEDKS 227

PyMOL of 3cuc

>3cuc_A Protein of unknown function with A FIC domain; FIC protein family, structural genomics, joint center for ST genomics, JCSG; HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482} Length = 291	Back alignment and structure

>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA; FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A* Length = 299	Back alignment and structure

>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA; FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A* Length = 299	Back alignment and structure

>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC domain, type III, effector, T3SS, nucleotidyltransferase, virulence; 1.80A {Vibrio parahaemolyticus} Length = 314	Back alignment and structure

>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC domain, type III, effector, T3SS, nucleotidyltransferase, virulence; 1.80A {Vibrio parahaemolyticus} Length = 314	Back alignment and structure

>2f6s_A Cell filamentation protein, putative; structural PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.50A {Helicobacter pylori} SCOP: a.265.1.1 Length = 201	Back alignment and structure

>3se5_A Cell filamentation protein FIC-related protein; ampylation, adenylylation, transferase; HET: ANP P6G; 1.70A {Neisseria meningitidis} Length = 164	Back alignment and structure

>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A* Length = 302	Back alignment and structure

>3shg_A VBHT; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1} Length = 205	Back alignment and structure

>2g03_A Hypothetical protein NMA0004; cell filamentation, cell division, chromosome partitioning, protein family, structural genomics, PSI; 2.20A {Neisseria meningitidis} SCOP: a.265.1.1 PDB: 3s6a_A* 3sn9_A* Length = 194	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252	Back alignment and structure

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208	Back alignment and structure

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208	Back alignment and structure

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514	Back alignment and structure

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723	Back alignment and structure

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597	Back alignment and structure

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330	Back alignment and structure

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		505
3cuc_A		291	Protein of unknown function with A FIC domain; FIC	100.0
2qc0_A		373	Uncharacterized protein; NP_719793.1, uncharacteri	100.0
3eqx_A		373	FIC domain containing transcriptional regulator; F	100.0
3n3u_A		299	Ampylator IBPA, adenosine monophosphate-protein tr	99.97
3shg_A		205	VBHT; ampylation, adenylylation, toxin-antitoxin c	99.92
2jk8_A		302	BEPA, putative cell filamentation protein (BEPA pr	99.91
2f6s_A		201	Cell filamentation protein, putative; structural P	99.91
2g03_A		194	Hypothetical protein NMA0004; cell filamentation,	99.91
3se5_A		164	Cell filamentation protein FIC-related protein; am	99.9
3let_A		314	Adenosine monophosphate-protein transferase VOPS;	99.76
3cuc_A		291	Protein of unknown function with A FIC domain; FIC	99.69
3dd7_A		135	DOC, death on curing protein; all alpha, ribosome	99.04
2qc0_A		373	Uncharacterized protein; NP_719793.1, uncharacteri	98.32
3n3u_A		299	Ampylator IBPA, adenosine monophosphate-protein tr	98.1
3eqx_A		373	FIC domain containing transcriptional regulator; F	97.56
3se5_A		164	Cell filamentation protein FIC-related protein; am	87.46
2jk8_A		302	BEPA, putative cell filamentation protein (BEPA pr	84.15

>3cuc_A Protein of unknown function with A FIC domain; FIC protein family, structural genomics, joint center for ST genomics, JCSG; HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

Probab=100.00  E-value=9.9e-41  Score=336.40  Aligned_cols=243  Identities=21%  Similarity=0.357  Sum_probs=200.9

Q ss_pred             HHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHH
Q psy1740          48 LRKIDEKRDQVSSI-PESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKY  126 (505)
Q Consensus        48 L~~i~~~r~~l~~~-p~~~~~l~~l~~e~~~~~i~~S~~IEGn~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~  126 (505)
                      +.+|+++++.+... |.++..++++.+...++++|+||+|||+++|..||+.+++.+..+++++.++..|+.|+..|+++
T Consensus         4 ~~~i~~~~~~~~~~~~l~~~~~~~l~~~~~i~~~~~S~~IEG~~~t~~e~~~ll~~~~~~~~~~~~d~~ev~~~~~a~~~   83 (291)
T 3cuc_A            4 ISNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETSGNASLKDYEEMKAHNVGLEM   83 (291)
T ss_dssp             -CHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhcCCcCCCCchhHHHHHHHHHHHHHH
Confidence            66799999998887 67888899999999999999999999999999999999987777777778899999999999999


Q ss_pred             HHHHhcccCCCCCHHHHHHHHHHHhcCCC--------------CCCCCccccccceec---c--ccCCCCCCcHHHHHHH
Q psy1740         127 INNTLVNRVGDITVADLLEIHKRVLGFAD--------------PLASGMFRRTQVFVG---G--HIPPTPPHIIPLMDEF  187 (505)
Q Consensus       127 i~~~l~~~~~~ls~~~i~~lH~~L~~~~~--------------~~~~G~~R~~~v~ig---~--~~pp~p~~v~~~m~~l  187 (505)
                      +.+.......++|.+.|+++|+.|+++..              ...+|.||+.+|+|+   |  +.||+|..|+..|++|
T Consensus        84 i~~~~~~~~~~ls~~~i~~lH~~L~~~~~~~~~~~~~G~~~~~~~~~G~~R~~~~~i~~~~g~~~~~~~p~~v~~~m~~l  163 (291)
T 3cuc_A           84 IKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQDIRMQIKVGEYKSRPNSVLTATGEVFSYASPEETPAFMTSL  163 (291)
T ss_dssp             HHHHHHSTTCCCCHHHHHHHHHHHSCSCCCC---------------CCSBCSSCCCEEC--CCEECCCCTTTHHHHHHHH
T ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHcCcccccccCCCCcccccccccceeeccCceEEecCCCeecCCCHHHHHHHHHHH
Confidence            98765444579999999999999997542              125899999999885   2  7788999999999999


Q ss_pred             HHHHhhcc-ccCCCHHHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeeccccccccccCCCCcccchhccH
Q psy1740         188 IAWLNSDV-ALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTI  266 (505)
Q Consensus       188 ~~~~~~~~-~~~~~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~~~e~~~~l  266 (505)
                      ++|++... ....+|+++||.+|++|++||||.||||||||++++++|.++|+++..+..++|.+||++|..+....|++
T Consensus       164 ~~~~~~~~~~~~~~~l~~aa~~h~~f~~IHPF~DGNGRt~Rll~~~~L~~~g~~~~~i~~~~r~~Y~~aL~~~~~~~~~~  243 (291)
T 3cuc_A          164 VDWYNLEADKGILTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPMIVIHSEDKSNYLNILHQCDVEAGLT  243 (291)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHHHHHCCBSSCHHHHHHHHHHHHHHHTTCCCCCCCGGGHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHhhhcccccCCHHHHHHHHHHHHhhcCCCcCCChHHHHHHHHHHHHHcCCCceeccHhhHHHHHHHHHHhhhhcccc
Confidence            99998753 23479999999999999999999999999999999999999999999888999999999998653221211


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q psy1740         267 SAAIEMKKMGKIDKALKLFEHAFA  290 (505)
Q Consensus       267 ~a~i~~~~~g~~~~~~~~f~~~~~  290 (505)
                      ..--.....+++..|+++|..++.
T Consensus       244 ~~~g~~~~~~d~~~~i~~~~~~i~  267 (291)
T 3cuc_A          244 PSDGANATLNDILPFVNYLSSCLI  267 (291)
T ss_dssp             HHHHHTCCTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccCHHHHHHHHHHHHH
Confidence            100001125778888888877764

PyMOL of 3cuc

>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}	Back alignment and structure

>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA; FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*	Back alignment and structure

>3shg_A VBHT; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}	Back alignment and structure

>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*	Back alignment and structure

>2f6s_A Cell filamentation protein, putative; structural PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.50A {Helicobacter pylori} SCOP: a.265.1.1	Back alignment and structure

>2g03_A Hypothetical protein NMA0004; cell filamentation, cell division, chromosome partitioning, protein family, structural genomics, PSI; 2.20A {Neisseria meningitidis} SCOP: a.265.1.1 PDB: 3s6a_A* 3sn9_A*	Back alignment and structure

>3se5_A Cell filamentation protein FIC-related protein; ampylation, adenylylation, transferase; HET: ANP P6G; 1.70A {Neisseria meningitidis}	Back alignment and structure

>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC domain, type III, effector, T3SS, nucleotidyltransferase, virulence; 1.80A {Vibrio parahaemolyticus}	Back alignment and structure

>3cuc_A Protein of unknown function with A FIC domain; FIC protein family, structural genomics, joint center for ST genomics, JCSG; HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>3dd7_A DOC, death on curing protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1} PDB: 3dd9_A 3k33_A 3kh2_A	Back alignment and structure

>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA; FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*	Back alignment and structure

>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}	Back alignment and structure

>3se5_A Cell filamentation protein FIC-related protein; ampylation, adenylylation, transferase; HET: ANP P6G; 1.70A {Neisseria meningitidis}	Back alignment and structure

>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		505
d2f6sa1		177	a.265.1.1 (A:1-177) Cell filamentation protein Fic	1e-29
d2g03a1		177	a.265.1.1 (A:11-187) Hypothetical protein NMA0004	3e-25
d1w3ba_		388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_		388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_		388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d2h6fa1		315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-04
d2c2la1		201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	9e-04
d1zbpa1		264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.001

>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic {Helicobacter pylori [TaxId: 210]} Length = 177	Back information, alignment and structure


class: All alpha proteins
fold: Fic-like
superfamily: Fic-like
family: Fic-like
domain: Cell filamentation protein Fic
species: Helicobacter pylori [TaxId: 210]

 Score =  112 bits (280), Expect = 1e-29
 Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 114 HNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHI 173
           H +   L+ A   I + L++ +   T+  L EIH+ +       A G  R   +  G   
Sbjct: 2   HLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFA-GKIRDKNIAKGNFR 60

Query: 174 PPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLI 233
                ++  ++    +          +        + ++   HPF++GNGR +R+ ++L+
Sbjct: 61  FANCLYLDLILPRIESMPQ-------NNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLL 113

Query: 234 LMQAGFPPVIIPKHERH 250
           L +     V+  + ++ 
Sbjct: 114 LKKELKKIVLWDRIDKA 130

PyMOL of d2f6sa1

>d2g03a1 a.265.1.1 (A:11-187) Hypothetical protein NMA0004 {Neisseria meningitidis [TaxId: 487]} Length = 177	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388	Back information, alignment and structure

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315	Back information, alignment and structure

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201	Back information, alignment and structure

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		505
d2f6sa1		177	Cell filamentation protein Fic {Helicobacter pylor	99.94
d2g03a1		177	Hypothetical protein NMA0004 {Neisseria meningitid	99.94
d2f6sa1		177	Cell filamentation protein Fic {Helicobacter pylor	87.5
d2g03a1		177	Hypothetical protein NMA0004 {Neisseria meningitid	84.57

>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

class: All alpha proteins
fold: Fic-like
superfamily: Fic-like
family: Fic-like
domain: Cell filamentation protein Fic
species: Helicobacter pylori [TaxId: 210]

Probab=99.94  E-value=5.1e-28  Score=224.10  Aligned_cols=136  Identities=18%  Similarity=0.226  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhcc
Q psy1740         116 EILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDV  195 (505)
Q Consensus       116 ei~n~~~A~~~i~~~l~~~~~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~  195 (505)
                      +..++.+|.+++...+.+...++|.+.|++||+.|++++.+| +|+||+.++.+|++.||+|..|+..|+.+..+     
T Consensus         4 d~~~~~~a~~l~e~~~~~~~e~~t~~~l~~iH~~lf~dv~~~-AG~~R~~~i~~g~~~~~~~~~i~~~~~~~~~~-----   77 (177)
T d2f6sa1           4 DRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEF-AGKIRDKNIAKGNFRFANCLYLDLILPRIESM-----   77 (177)
T ss_dssp             HHHHHHHHHHHHHTSGGGGSCSSSHHHHHHHHHHHHTTTBTT-TTCCCSSCCEETTEECSCTTTHHHHHHHHHTS-----
T ss_pred             hHHHHHHHHHHHHcccccccCCcCHHHHHHHHHHHHcCchhh-cCceeEEEEEECCeeCCCHHHHHHHHHHhhhc-----
Confidence            445566666666544444556789999999999999999877 89999999999999999999999888776543     


Q ss_pred             ccCCCHHHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeeccccccccccCCCCcc
Q psy1740         196 ALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTN  259 (505)
Q Consensus       196 ~~~~~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~~  259 (505)
                        ..+++++||.+|++|++||||.||||||+|++++++|.++|++|+.+...+|.+|++||..+
T Consensus        78 --~~~~~~~aa~~h~~~~~IHPF~DGNGRt~Rl~~~~~l~~~G~~~~~~~~~~r~~Y~~Al~~s  139 (177)
T d2f6sa1          78 --PQNNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERS  139 (177)
T ss_dssp             --CCSSHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHHHSCEECGGGSCHHHHHHHHHHT
T ss_pred             --cccHHHHHHHHHHHHccccCccCCcHHHHHHHHHHHHHHcCCCCceeeccCHHHHHHHHHHH
Confidence              23788999999999999999999999999999999999999999999999999999988654

PyMOL of d2f6sa1

>d2g03a1 a.265.1.1 (A:11-187) Hypothetical protein NMA0004 {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d2g03a1 a.265.1.1 (A:11-187) Hypothetical protein NMA0004 {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure