Psyllid ID: psy17412
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | 2.2.26 [Sep-21-2011] | |||||||
| Q95LY5 | 577 | Tetratricopeptide repeat | N/A | N/A | 0.508 | 0.211 | 0.377 | 9e-18 | |
| Q9H892 | 705 | Tetratricopeptide repeat | yes | N/A | 0.508 | 0.173 | 0.368 | 2e-17 | |
| Q8BW49 | 704 | Tetratricopeptide repeat | yes | N/A | 0.508 | 0.173 | 0.385 | 9e-17 | |
| Q54DA8 | 564 | Protein STIP1 homolog OS= | yes | N/A | 0.204 | 0.086 | 0.361 | 3e-10 | |
| Q80ZX8 | 901 | Sperm-associated antigen | no | N/A | 0.437 | 0.116 | 0.339 | 4e-09 | |
| O13754 | 358 | Hsp70/Hsp90 co-chaperone | yes | N/A | 0.533 | 0.357 | 0.321 | 1e-08 | |
| Q5ZHY5 | 314 | STIP1 homology and U box- | yes | N/A | 0.366 | 0.280 | 0.363 | 5e-08 | |
| Q5U2X2 | 893 | Sperm-associated antigen | no | N/A | 0.416 | 0.111 | 0.336 | 6e-08 | |
| Q9SIN1 | 691 | Inactive TPR repeat-conta | yes | N/A | 0.362 | 0.125 | 0.352 | 1e-07 | |
| Q54VG4 | 334 | Small glutamine-rich tetr | no | N/A | 0.475 | 0.341 | 0.310 | 2e-07 |
| >sp|Q95LY5|TTC12_MACFA Tetratricopeptide repeat protein 12 (Fragment) OS=Macaca fascicularis GN=TTC12 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 73/122 (59%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
F+ SVE DA R + R+ + +AD K GN+AF G YE A++ Y + +E+++D VLY
Sbjct: 84 FLASVEKDAKERAKRRRENKVLADALKDKGNEAFAEGNYETAILHYSEGLEKLKDVKVLY 143
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
TNRA + L+ Y+ L DC+ AL+ DE KA+ + RA +L ++E ++++E
Sbjct: 144 TNRAQAYMKLKNYEKALVDCEWALKCDEKCTKAYFHMGRANLALKNYSVSRECYKKILEI 203
Query: 144 YP 145
P
Sbjct: 204 NP 205
|
Macaca fascicularis (taxid: 9541) |
| >sp|Q9H892|TTC12_HUMAN Tetratricopeptide repeat protein 12 OS=Homo sapiens GN=TTC12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 74/122 (60%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
F+ SVE DA R + R+ + +AD K GN+AF G YE A+++Y + +E+++D VLY
Sbjct: 84 FLASVEKDAKERAKRRRENKVLADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLY 143
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
TNRA + L+ Y+ L DC+ AL+ DE KA+ + +A +L ++E ++++E
Sbjct: 144 TNRAQAYMKLEDYEKALVDCEWALKCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEI 203
Query: 144 YP 145
P
Sbjct: 204 NP 205
|
Homo sapiens (taxid: 9606) |
| >sp|Q8BW49|TTC12_MOUSE Tetratricopeptide repeat protein 12 OS=Mus musculus GN=Ttc12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
F+ SVE DA R + R+ + +AD K GN+AF G YE A+ Y + + +++D VLY
Sbjct: 83 FLASVEKDAKERAKRRRENRVLADALKEKGNEAFVRGDYETAIFFYSEGLGKLKDMKVLY 142
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
TNRA + L Y L DCD AL+ DE+ KA+ + +A +L +AKE +++ E
Sbjct: 143 TNRAQAFIKLGDYQKALVDCDWALKCDENCTKAYFHMGKAHVALKNYSKAKECYQKIEEI 202
Query: 144 YP 145
P
Sbjct: 203 NP 204
|
Mus musculus (taxid: 10090) |
| >sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 60/105 (57%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A FK GN AF S Y +A+ +D+AIE + +LY+NR+ +LL L + L D K
Sbjct: 8 ATEFKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKK 67
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150
A+ L D K +L + A++ LG+ EEA++ ++ PT ++L
Sbjct: 68 AIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQQL 112
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q80ZX8|SPAG1_MOUSE Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
K + +A+ K GN+AF SG YE A++ Y +++ + + + Y NRA + LQ +
Sbjct: 207 KEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSAL-PTAIAYNNRAQAEIKLQRWSSA 265
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
L DC+KAL LD N+KA L +A + +EA + +R++++ P
Sbjct: 266 LEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEP 311
|
Plays a role in fertilization. Binds GTP and has GTPase activity. Mus musculus (taxid: 10090) |
| >sp|O13754|CNS1_SCHPO Hsp70/Hsp90 co-chaperone cns1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cns1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 10 LNLLPTFFLFLMNDFM----RSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAA 65
LN +P FF+ + D +V++DA++ ++A +F+ +GN+ F S +Y+ A
Sbjct: 25 LNKVP-FFMQSLEDVGDESENNVQLDALKALAYEGEPHEVAQNFREHGNECFASKRYKDA 83
Query: 66 LVQYDKAIEQ-VRDSPV---LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121
Y KA+ Q D + Y+NRA L + Y VL DC + L+ D + KA+ A
Sbjct: 84 EEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLNDCAQVLQRDSTHAKAYYRSA 143
Query: 122 RAMHSLGQREEAKEYVR 138
+A+ +L + +EAKE +R
Sbjct: 144 KALVALKRYDEAKECIR 160
|
Co-chaperone that binds to the molecular chaperones Hsp90 and Hsp70. Stimulates Hsp70 ATPase activity, but not Hsp90 ATPase activity. Involved in only a subset of Hsp90 functions. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q5ZHY5|CHIP_CHICK STIP1 homology and U box-containing protein 1 OS=Gallus gallus GN=STUB1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN+ F +Y A Y +AI + V YTNRAL L +Q +D L DC +
Sbjct: 36 AQEHKEQGNRLFGGRKYPEAAAAYGRAINRNPLVAVYYTNRALCYLKMQQHDKALADCKR 95
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEA 133
AL LD ++KAH + + + +EA
Sbjct: 96 ALELDGQSVKAHFFLGQCQMEMENYDEA 123
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E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Mediates polyubiquitination of DNA polymerase beta (POLB), thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome. Mediates polyubiquitination of CYP3A4. May ubiquitinate EPHA2 and regulate the receptor stability and activity through proteasomal degradation. Gallus gallus (taxid: 9031) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5U2X2|SPAG1_RAT Sperm-associated antigen 1 OS=Rattus norvegicus GN=Spag1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 104
+A+ K GN+AF SG YE A++ Y +++ + + Y NRA + LQ + L DC+
Sbjct: 212 LANREKGKGNEAFYSGDYEEAVMYYTRSLSAL-PTATAYNNRAQAEIKLQRWSSALEDCE 270
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
KAL L+ N+KA L +A + EA + +R++++ P
Sbjct: 271 KALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEP 311
|
Binds GTP and has GTPase activity (By similarity). Plays a role in fertilization. Rattus norvegicus (taxid: 10116) |
| >sp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 109
+ GN+ F SG++ A V Y ++Q + VLY NRA L L++ + DC+ AL+
Sbjct: 462 RTRGNELFSSGRFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLWEKSVEDCNHALKS 521
Query: 110 DEDNMKAHLYKARAMHSLGQREEA-KEY 136
+KA L +A + LG+ E+A K+Y
Sbjct: 522 QPSYIKALLRRAASYGKLGRWEDAVKDY 549
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Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptator protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 34 RRFEERKARQ--DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLL 91
++F E KA + IA+ K GN G+++ AL Y+KAI + + + NRA T
Sbjct: 131 QKFMESKAGEVKAIAEKLKNEGNAKLNEGKHQEALSCYNKAILYDNTNAIYFANRAATYS 190
Query: 92 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147
LQ ++ + DC +A++ + + KA+ A SLG+ EA E + +E P
Sbjct: 191 ALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAYNKAIELEPNN 246
|
May act as a co-chaperone and regulate the ATPase activity of heat shock proteins. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | ||||||
| 332031373 | 266 | Tetratricopeptide repeat protein 12 [Acr | 0.591 | 0.533 | 0.433 | 1e-23 | |
| 242023704 | 272 | heat shock protein 70 HSP70 interacting | 0.541 | 0.477 | 0.429 | 2e-21 | |
| 383854814 | 253 | PREDICTED: tetratricopeptide repeat prot | 0.508 | 0.482 | 0.450 | 2e-21 | |
| 380021817 | 262 | PREDICTED: tetratricopeptide repeat prot | 0.508 | 0.465 | 0.442 | 5e-21 | |
| 156547021 | 267 | PREDICTED: tetratricopeptide repeat prot | 0.508 | 0.456 | 0.442 | 6e-21 | |
| 307187791 | 140 | Tetratricopeptide repeat protein 12 [Cam | 0.508 | 0.871 | 0.418 | 8e-21 | |
| 328786092 | 263 | PREDICTED: tetratricopeptide repeat prot | 0.508 | 0.463 | 0.434 | 2e-20 | |
| 350427887 | 261 | PREDICTED: LOW QUALITY PROTEIN: tetratri | 0.508 | 0.467 | 0.434 | 1e-19 | |
| 340728445 | 261 | PREDICTED: LOW QUALITY PROTEIN: tetratri | 0.508 | 0.467 | 0.434 | 1e-19 | |
| 270008563 | 258 | hypothetical protein TcasGA2_TC015092 [T | 0.416 | 0.387 | 0.5 | 2e-19 |
| >gi|332031373|gb|EGI70886.1| Tetratricopeptide repeat protein 12 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FM+SVE DA +R EERK R + A+ K N AF+ G YE A+ Y KA+EQ +DS VL+
Sbjct: 116 FMKSVEKDAKKRAEERKIRNERAETLKRIANGAFKEGDYEKAVTYYSKALEQRKDSSVLW 175
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
NRAL+ ++L+L++ L DC+ L+L + N+KA LY A+ L RE++KEY+R EK
Sbjct: 176 NNRALSYMNLELFEKALHDCEWTLKLSDSNLKALLYSAKCYMHLRNREKSKEYIRMAKEK 235
Query: 144 YPTRRKLAIEQVRDSPVLYTNRA 166
P K I++ +++ L N++
Sbjct: 236 NPHFNKF-IDEFQENIELQFNKS 257
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242023704|ref|XP_002432271.1| heat shock protein 70 HSP70 interacting protein, putative [Pediculus humanus corporis] gi|212517680|gb|EEB19533.1| heat shock protein 70 HSP70 interacting protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 88/135 (65%), Gaps = 5/135 (3%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FMR+VE DA +R ++RK R+ +D KA KAF S YE AL Y+KAI+ +DS +LY
Sbjct: 132 FMRTVEEDAKKRAQDRKERKKESDVIKAQACKAFSSKDYEKALDLYNKAIDVRKDSYILY 191
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDED-NMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
NRALTLL+L L L DC+ +L L+ D N KA L+K +A +G+ E+ K ++ Q+V+
Sbjct: 192 NNRALTLLNLGLNSRALKDCETSLMLNNDNNFKASLFKGKAYFKMGEYEKVKSWMEQVVK 251
Query: 143 KYPTRRKLAIEQVRD 157
+P + +++++D
Sbjct: 252 MFPNK----VQEIKD 262
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383854814|ref|XP_003702915.1| PREDICTED: tetratricopeptide repeat protein 12-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 78/122 (63%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FM+SVE DA +R E RK R + A+ K GN AF+ G YE A+ Y KA+EQ +DS VL+
Sbjct: 111 FMKSVEKDAKKRAESRKIRNERAETLKRIGNGAFKEGNYEKAVTYYSKALEQRKDSSVLW 170
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
NRAL+ + L L++ L DC+ AL++++ N+KA L A+ LG + KEY+R E+
Sbjct: 171 NNRALSYIRLGLFEKALADCEWALKVNDANLKALLNSAKCYKKLGNNIKYKEYIRLARER 230
Query: 144 YP 145
P
Sbjct: 231 NP 232
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380021817|ref|XP_003694753.1| PREDICTED: tetratricopeptide repeat protein 12-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FM+SVE DA R E RK R + A+ K GN AF+ G YE A+ Y KA+EQ +DS VL+
Sbjct: 113 FMKSVEKDAKERAENRKIRNERAETLKTIGNGAFKEGNYEKAVTYYTKALEQRKDSTVLW 172
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
NRAL+ + L L++ L DC+ AL+++ N+KA L A+ LG + KEY+ E+
Sbjct: 173 NNRALSYIQLGLFEKALSDCEWALKVNNTNLKALLNSAKCYKQLGDETKYKEYILLAKER 232
Query: 144 YP 145
P
Sbjct: 233 NP 234
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156547021|ref|XP_001600918.1| PREDICTED: tetratricopeptide repeat protein 12-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 79/122 (64%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
F RSVE DA R E+RKAR + A+ +K GN AF+ YE A+ + KA+EQ RDS VL+
Sbjct: 115 FKRSVERDAAARAEDRKARNERAETYKRIGNGAFKESDYEKAVTYFSKALEQRRDSAVLW 174
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
NRAL+ + L L++ L DC+ AL+++E N+KA L A+ SLG E+ + +++ E+
Sbjct: 175 NNRALSYMRLGLFEKALLDCNWALKVNEANIKALLNSAKCHKSLGNEEQCRNFIQLARER 234
Query: 144 YP 145
P
Sbjct: 235 NP 236
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307187791|gb|EFN72757.1| Tetratricopeptide repeat protein 12 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 81/122 (66%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
F++S+E DA +R E+RK R + A+ K N AF+ G YE A+ + KA+EQ +DS VL+
Sbjct: 6 FIKSIEDDAKKRTEDRKIRNERAETLKRIANGAFKEGDYEKAVTYFSKALEQRKDSSVLW 65
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
NRAL+ + L L++ L DC+ AL+++ N+KA L A+ +LG +E++KEY++ E+
Sbjct: 66 NNRALSYIRLGLFEKALHDCEWALKVNNSNLKALLNSAKCYINLGNKEKSKEYIQIAKER 125
Query: 144 YP 145
P
Sbjct: 126 NP 127
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328786092|ref|XP_001122862.2| PREDICTED: tetratricopeptide repeat protein 12-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FM+SVE DA R E RK R + A+ K GN AF+ G YE A+ Y KA+EQ +DS +L+
Sbjct: 114 FMKSVEKDAKERAENRKIRNERAETLKTIGNGAFKEGNYEKAVTYYTKALEQRKDSTLLW 173
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
NRAL+ + L L++ L DC+ AL+++ N+KA L A+ LG + KEY+ E+
Sbjct: 174 NNRALSYIQLGLFEKALNDCEWALKVNNTNLKALLNSAKCYKQLGDETKYKEYILLAKER 233
Query: 144 YP 145
P
Sbjct: 234 NP 235
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350427887|ref|XP_003494915.1| PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 12-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FM+SVE DA R E RK R + A+ K GN AF+ YE A+ Y KA+EQ +DS VL+
Sbjct: 113 FMKSVEKDAKERAENRKIRNERAETLKTIGNGAFKEKNYEKAVTYYSKALEQRKDSTVLW 172
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
NRAL+ + L L++ L DC+ AL+++ N+KA L A+ LG + KEY++ E+
Sbjct: 173 NNRALSYIQLGLFERALADCEWALKVNNTNLKALLNSAKCYKQLGDEIKYKEYIQLAKER 232
Query: 144 YP 145
P
Sbjct: 233 NP 234
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340728445|ref|XP_003402535.1| PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 12-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FM+SVE DA R E RK R + A+ K GN AF+ YE A+ Y KA+EQ +DS VL+
Sbjct: 113 FMKSVEKDAKERAENRKIRNERAETLKTIGNGAFKEKNYEKAVTYYSKALEQRKDSTVLW 172
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
NRAL+ + L L++ L DC+ AL+++ N+KA L A+ LG + KEY++ E+
Sbjct: 173 NNRALSYIQLGLFERALADCEWALKVNNTNLKALLNSAKCYKQLGDEIKYKEYIQLAKER 232
Query: 144 YP 145
P
Sbjct: 233 NP 234
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270008563|gb|EFA05011.1| hypothetical protein TcasGA2_TC015092 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 70/100 (70%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FM V DA RR++++ R++ + FK AF+ G+Y AL Y KAIEQ+RDS VLY
Sbjct: 88 FMDEVSKDADRRYKQKLIRREKMETFKKQATLAFRRGEYAKALSLYTKAIEQIRDSCVLY 147
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123
TNRALT ++L+ YD + DC+ ALRL+E+++KAHL A+A
Sbjct: 148 TNRALTYINLKHYDKAIGDCETALRLNENSLKAHLLMAKA 187
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | ||||||
| ZFIN|ZDB-GENE-061013-512 | 591 | spag1b "sperm associated antig | 0.475 | 0.192 | 0.336 | 8.3e-19 | |
| FB|FBgn0039228 | 250 | CG6980 [Drosophila melanogaste | 0.508 | 0.488 | 0.422 | 3.6e-18 | |
| MGI|MGI:1349387 | 901 | Spag1 "sperm associated antige | 0.487 | 0.129 | 0.330 | 1.3e-17 | |
| MGI|MGI:2444588 | 704 | Ttc12 "tetratricopeptide repea | 0.508 | 0.173 | 0.385 | 1.9e-16 | |
| FB|FBgn0024352 | 490 | Hop "Hsp70/Hsp90 organizing pr | 0.691 | 0.338 | 0.292 | 1.4e-14 | |
| FB|FBgn0051294 | 225 | CG31294 [Drosophila melanogast | 0.454 | 0.484 | 0.381 | 1.4e-14 | |
| RGD|1310702 | 893 | Spag1 "sperm associated antige | 0.437 | 0.117 | 0.330 | 2.7e-14 | |
| UNIPROTKB|Q07617 | 926 | SPAG1 "Sperm-associated antige | 0.487 | 0.126 | 0.322 | 4.4e-14 | |
| UNIPROTKB|G4MXP4 | 284 | MGG_08035 "E3 ubiquitin-protei | 0.433 | 0.366 | 0.403 | 5.6e-14 | |
| FB|FBgn0085303 | 250 | CG34274 [Drosophila melanogast | 0.466 | 0.448 | 0.359 | 7.9e-14 |
| ZFIN|ZDB-GENE-061013-512 spag1b "sperm associated antigen 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 8.3e-19, Sum P(3) = 8.3e-19
Identities = 39/116 (33%), Positives = 67/116 (57%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+Q A K GN+A++S YE AL Y +++ + S ++ NRA TL+ LQ + L
Sbjct: 190 KQTAALREKDKGNEAYRSRDYEEALDYYCRSLS-LASSAAVFNNRAQTLIRLQQWPAALS 248
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRD 157
DCD L+L+ N+KA L +A LG ++E+ + +R +++ P + K A++ + D
Sbjct: 249 DCDAVLQLEPHNIKALLRRATVHKHLGHQQESHDDLRAVLQIQP-QNKTALKLLAD 303
|
|
| FB|FBgn0039228 CG6980 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 52/123 (42%), Positives = 73/123 (59%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FM VE DA R E R + A+ ++ GN+AF+S +YE A++ YDKAI +V+DS + Y
Sbjct: 106 FMEQVEKDANDRAEARAKAEYEAELQRSQGNEAFRSQKYEKAILHYDKAIIKVKDSAITY 165
Query: 84 TNRALTLLHLQLYDPVLPDCDKAL-RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
NRAL + LQ Y L DC L +L E N++A LY+A A L Q ++ +E V + E
Sbjct: 166 CNRALCYIKLQNYKRALKDCQYVLEKLQESNLRAWLYQAHAYKGLKQDDKFEESVVKARE 225
Query: 143 KYP 145
P
Sbjct: 226 HNP 228
|
|
| MGI|MGI:1349387 Spag1 "sperm associated antigen 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 40/121 (33%), Positives = 66/121 (54%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
K + +A+ K GN+AF SG YE A++ Y +++ + + + Y NRA + LQ +
Sbjct: 207 KEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSAL-PTAIAYNNRAQAEIKLQRWSSA 265
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR---RKLAIEQVR 156
L DC+KAL LD N+KA L +A + +EA + +R++++ P +K E R
Sbjct: 266 LEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Query: 157 D 157
D
Sbjct: 326 D 326
|
|
| MGI|MGI:2444588 Ttc12 "tetratricopeptide repeat domain 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 47/122 (38%), Positives = 70/122 (57%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
F+ SVE DA R + R+ + +AD K GN+AF G YE A+ Y + + +++D VLY
Sbjct: 83 FLASVEKDAKERAKRRRENRVLADALKEKGNEAFVRGDYETAIFFYSEGLGKLKDMKVLY 142
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
TNRA + L Y L DCD AL+ DE+ KA+ + +A +L +AKE +++ E
Sbjct: 143 TNRAQAFIKLGDYQKALVDCDWALKCDENCTKAYFHMGKAHVALKNYSKAKECYQKIEEI 202
Query: 144 YP 145
P
Sbjct: 203 NP 204
|
|
| FB|FBgn0024352 Hop "Hsp70/Hsp90 organizing protein homolog" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 50/171 (29%), Positives = 87/171 (50%)
Query: 29 EIDAMRRFEERKA--RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR 86
E++A + EER A + A+ K GN F+ G Y A+ Y +AI++ D P LY+NR
Sbjct: 291 EVEAKIKEEERMAYINPEKAEEEKEQGNLFFKKGDYSTAVKHYTEAIKRNPDDPKLYSNR 350
Query: 87 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
A L +D L DCD ++LDE +K ++ K + + + Q+ +A+ ++ +E P
Sbjct: 351 AACYTKLAAFDLGLKDCDTCIKLDEKFIKGYIRKGKILQGMQQQSKAQAAYQKALELDPN 410
Query: 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC--DKALRLDEDNMKA 195
+ AIE R + + +L + DP + D A+R+ + M++
Sbjct: 411 NAE-AIEGYRQCSMNFQRNPQEVLKNAMSDPEIQQILKDPAMRMILEQMQS 460
|
|
| FB|FBgn0051294 CG31294 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 42/110 (38%), Positives = 63/110 (57%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FMR +++ R E R+ R+ +AD F+ GN+ ++ YE A+ Y KAI+ V DSPVLY
Sbjct: 84 FMRQIDVSPKDRAEARRDREIVADSFRRLGNEEYRRTNYEKAVYFYSKAIQYVADSPVLY 143
Query: 84 TNRALTLLHLQLYDPVLPDCDKAL-RLDEDNMKAHLYKARAMHSLGQREE 132
NRAL + + + L D D + LD +++A LY+A A+ L E
Sbjct: 144 CNRALAKIKKRDFKLALFDLDYVIFNLDPIHLRAWLYRAGALARLNNESE 193
|
|
| RGD|1310702 Spag1 "sperm associated antigen 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 35/106 (33%), Positives = 59/106 (55%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
K + +A+ K GN+AF SG YE A++ Y +++ + + Y NRA + LQ +
Sbjct: 207 KEKNFLANREKGKGNEAFYSGDYEEAVMYYTRSLSAL-PTATAYNNRAQAEIKLQRWSSA 265
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
L DC+KAL L+ N+KA L +A + EA + +R++++ P
Sbjct: 266 LEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEP 311
|
|
| UNIPROTKB|Q07617 SPAG1 "Sperm-associated antigen 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 39/121 (32%), Positives = 62/121 (51%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
K + +A K GN+AF SG YE A++ Y ++I + + V Y NRA + LQ ++
Sbjct: 203 KEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISAL-PTVVAYNNRAQAEIKLQNWNSA 261
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR---RKLAIEQVR 156
DC+K L L+ N+KA L +A + EA E + ++++ P +K E R
Sbjct: 262 FQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVER 321
Query: 157 D 157
D
Sbjct: 322 D 322
|
|
| UNIPROTKB|G4MXP4 MGG_08035 "E3 ubiquitin-protein ligase CHIP" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 42/104 (40%), Positives = 56/104 (53%)
Query: 33 MRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH 92
M + ++ +A A K GN+ FQ+G Y A Y KAI SP LYTNRA+ L
Sbjct: 1 MAQNKQDRAMNPTALLLKEEGNRRFQAGDYLGAEASYSKAIIADSLSPTLYTNRAMARLK 60
Query: 93 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136
L +D V+ DC + L+L NMKAH Y A LG +EA ++
Sbjct: 61 LSQWDSVISDCLECLKLAPKNMKAHYYCGMAQLELGNLDEAHDH 104
|
|
| FB|FBgn0085303 CG34274 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 41/114 (35%), Positives = 64/114 (56%)
Query: 24 FMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
FMR ++ + R R+ R+D+A+ F+ GN ++ + A Y K I+ ++DSPVLY
Sbjct: 111 FMRQIDSEPDDRVLAREQREDVAETFRRMGNYEYRKLNFSLAKDYYSKGIQYIKDSPVLY 170
Query: 84 TNRALTLLHLQLYDPVLPDCDKAL-RLDEDNMKAHLYKARAMHSLGQREEAKEY 136
NRAL + L+ + + DCD L ++DE ++A LY+A A L E EY
Sbjct: 171 VNRALCFIKLREFKLGIIDCDYVLAKIDEHYLRAWLYRAAAYKRLND-EPNFEY 223
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 240 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-10 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-08 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-06 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-04 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 2e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-12
Identities = 36/94 (38%), Positives = 49/94 (52%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ AL Y+KA+E D+ Y N A L Y+ L D +KAL LD D
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
N KA+ A + LG+ EEA E + +E P
Sbjct: 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-10
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-QLYDPVLPD 102
D A+ K GN F+ G Y+ A+ Y+KA+E D+ Y N AL L L + Y+ L D
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 103 CDKALRLDE 111
+KAL LD
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-08
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL 174
+A L + LG +EA EY + +E P D+ Y N A L
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDP-----------DNADAYYNLAAAYYKLGK 49
Query: 175 YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
Y+ L D +KAL LD DN KA+ A + LG+ EEA E + +E P
Sbjct: 50 YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
EERK A K GNKA+++ + A+ Y KAIE + PV Y+NRA L +
Sbjct: 121 EERKK---YAAKLKEKGNKAYRNKDFNKAIKLYSKAIE-CKPDPVYYSNRAACHNALGDW 176
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133
+ V+ D AL LD D KA +A A LG+ +A
Sbjct: 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADA 213
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV 141
N L YD L +KAL LD DN A+ A A + LG+ EEA E + +
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 142 EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191
E P D+ Y N L L Y+ L +KAL LD +
Sbjct: 62 ELDP-----------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
L D K++ LD ++++ +A LG ++A+E + A++ + P
Sbjct: 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK-----------ALKLNSEDP 399
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
+Y +RA + D K++ LD D + +H+ + G + R
Sbjct: 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459
Query: 220 VEKYP 224
+ +P
Sbjct: 460 KKNFP 464
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+AF + A+ Y +AI+ ++ LY +RA + L + + D +KA+ LD
Sbjct: 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS 68
Query: 113 NMKAHLYKARAMHSLGQREEAK 134
KA+L K A L + + AK
Sbjct: 69 LAKAYLRKGTACMKLEEYQTAK 90
|
Length = 356 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 4e-04
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR-EEAKEY 215
D+ N L L YD + +KAL LD DN +A+ A A LG+ EEA E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 216 IRELVEKYP 224
+ + +E P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 11/172 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G GQ E A Y++A+ S A L +D D+ L D
Sbjct: 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG 191
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N+ A L K + SLG E A R+ AI ++ + A L+
Sbjct: 192 NVDALLLKGDLLLSLGNIELALAAYRK-----------AIALRPNNIAVLLALATILIEA 240
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
++ D L+ ++ AH KA E+A+E +++ ++ P
Sbjct: 241 GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 48/217 (22%), Positives = 72/217 (33%), Gaps = 33/217 (15%)
Query: 32 AMRRFEERKARQDI-------ADHFKA---NGNKAFQSGQYEAALVQYDKAIEQVRDSPV 81
A+ +AR I + A G+ G E AL Y KAI ++
Sbjct: 169 ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIA 228
Query: 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV 141
+ A L+ ++ D L+ ++ AH KA E+A+E ++ +
Sbjct: 229 VLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288
Query: 142 EK---YPTRRKLA---------IEQVR-----------DSPVLYTNRALTLLHLQLYDPV 178
+ Y LA +EQ +S A L L D
Sbjct: 289 KSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEA 348
Query: 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+ AL LD D+ A A LG E+A EY
Sbjct: 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEY 385
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 6e-04
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR-EEAKEY 136
D+ N L L YD + +KAL LD DN +A+ A A LG+ EEA E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 137 VRQLVEKYP 145
+ + +E P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.002
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
DN +A A+ LG +EA E + A+E D+ Y N AL L
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEK-----------ALELDPDNAEAYYNLALAYLK 49
Query: 172 L-QLYDPVLPDCDKALRLDE 190
L + Y+ L D +KAL LD
Sbjct: 50 LGKDYEEALEDLEKALELDP 69
|
Length = 69 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| KOG4626|consensus | 966 | 99.96 | ||
| KOG4626|consensus | 966 | 99.96 | ||
| KOG1126|consensus | 638 | 99.94 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.92 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.92 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG1155|consensus | 559 | 99.9 | ||
| KOG1126|consensus | 638 | 99.9 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.89 | |
| KOG1155|consensus | 559 | 99.88 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.88 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.88 | |
| KOG0547|consensus | 606 | 99.88 | ||
| KOG1125|consensus | 579 | 99.88 | ||
| KOG0547|consensus | 606 | 99.88 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.88 | |
| KOG1173|consensus | 611 | 99.88 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| KOG1125|consensus | 579 | 99.87 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| KOG0548|consensus | 539 | 99.86 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.86 | |
| KOG0624|consensus | 504 | 99.85 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.84 | |
| KOG1129|consensus | 478 | 99.84 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.83 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.83 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.83 | |
| KOG2002|consensus | 1018 | 99.83 | ||
| KOG2076|consensus | 895 | 99.82 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.82 | |
| KOG1129|consensus | 478 | 99.8 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG0553|consensus | 304 | 99.78 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.78 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.78 | |
| KOG2003|consensus | 840 | 99.77 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.77 | |
| KOG2002|consensus | 1018 | 99.77 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.76 | |
| KOG0624|consensus | 504 | 99.76 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.75 | |
| KOG0550|consensus | 486 | 99.75 | ||
| KOG3060|consensus | 289 | 99.75 | ||
| KOG2003|consensus | 840 | 99.75 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| KOG1173|consensus | 611 | 99.74 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.73 | |
| KOG0553|consensus | 304 | 99.73 | ||
| KOG0495|consensus | 913 | 99.73 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.72 | |
| KOG1174|consensus | 564 | 99.72 | ||
| KOG1840|consensus | 508 | 99.72 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.71 | |
| KOG2076|consensus | 895 | 99.71 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.69 | |
| KOG1840|consensus | 508 | 99.68 | ||
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.67 | |
| KOG4162|consensus | 799 | 99.67 | ||
| KOG0495|consensus | 913 | 99.67 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.66 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.66 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.66 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.65 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.65 | |
| KOG0548|consensus | 539 | 99.64 | ||
| KOG3060|consensus | 289 | 99.64 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.64 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.63 | |
| KOG0550|consensus | 486 | 99.63 | ||
| KOG4162|consensus | 799 | 99.63 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.62 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.61 | |
| KOG1156|consensus | 700 | 99.6 | ||
| KOG1127|consensus | 1238 | 99.59 | ||
| KOG1174|consensus | 564 | 99.58 | ||
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.57 | |
| KOG1156|consensus | 700 | 99.56 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.56 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.54 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.53 | |
| KOG1128|consensus | 777 | 99.53 | ||
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.53 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.53 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.52 | |
| KOG0543|consensus | 397 | 99.49 | ||
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.49 | |
| KOG2376|consensus | 652 | 99.48 | ||
| KOG1128|consensus | 777 | 99.48 | ||
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.47 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.47 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.47 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.47 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.46 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.46 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.46 | |
| KOG1127|consensus | 1238 | 99.45 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.45 | |
| KOG3785|consensus | 557 | 99.45 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.44 | |
| KOG0543|consensus | 397 | 99.44 | ||
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.43 | |
| KOG4648|consensus | 536 | 99.43 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 99.42 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.41 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.41 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.4 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.39 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.39 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.37 | |
| KOG4234|consensus | 271 | 99.37 | ||
| KOG4340|consensus | 459 | 99.36 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.33 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.33 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 99.32 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.3 | |
| KOG2376|consensus | 652 | 99.3 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.29 | |
| KOG4234|consensus | 271 | 99.29 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.28 | |
| KOG1130|consensus | 639 | 99.26 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 99.26 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.26 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 99.25 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 99.24 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.24 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 99.23 | |
| KOG1070|consensus | 1710 | 99.22 | ||
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 99.22 | |
| KOG4648|consensus | 536 | 99.22 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.21 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 99.21 | |
| KOG1915|consensus | 677 | 99.21 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 99.18 | |
| KOG1130|consensus | 639 | 99.18 | ||
| KOG3785|consensus | 557 | 99.18 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 99.17 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 99.16 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.15 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 99.15 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.14 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.14 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 99.11 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.11 | |
| KOG4555|consensus | 175 | 99.1 | ||
| KOG4642|consensus | 284 | 99.09 | ||
| KOG4340|consensus | 459 | 99.08 | ||
| KOG3081|consensus | 299 | 99.05 | ||
| KOG3081|consensus | 299 | 99.04 | ||
| KOG1915|consensus | 677 | 99.01 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.98 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.96 | |
| KOG2796|consensus | 366 | 98.94 | ||
| KOG0545|consensus | 329 | 98.93 | ||
| KOG1070|consensus | 1710 | 98.91 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.9 | |
| KOG1941|consensus | 518 | 98.9 | ||
| KOG2796|consensus | 366 | 98.88 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| KOG0376|consensus | 476 | 98.83 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.82 | |
| KOG1586|consensus | 288 | 98.81 | ||
| KOG4642|consensus | 284 | 98.8 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.8 | |
| KOG4555|consensus | 175 | 98.79 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.75 | |
| KOG0545|consensus | 329 | 98.74 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.73 | |
| KOG0376|consensus | 476 | 98.72 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.72 | |
| KOG1585|consensus | 308 | 98.69 | ||
| KOG0551|consensus | 390 | 98.69 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.67 | |
| KOG1941|consensus | 518 | 98.67 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.65 | |
| KOG2047|consensus | 835 | 98.62 | ||
| KOG0551|consensus | 390 | 98.59 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.58 | |
| KOG2053|consensus | 932 | 98.58 | ||
| KOG2053|consensus | 932 | 98.58 | ||
| KOG2610|consensus | 491 | 98.57 | ||
| KOG2047|consensus | 835 | 98.55 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.54 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.5 | |
| KOG1308|consensus | 377 | 98.49 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.48 | |
| KOG1586|consensus | 288 | 98.46 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.46 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.46 | |
| KOG2610|consensus | 491 | 98.45 | ||
| KOG4507|consensus | 886 | 98.4 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.4 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.39 | |
| KOG2471|consensus | 696 | 98.39 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.36 | |
| KOG2471|consensus | 696 | 98.35 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 98.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 98.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 98.21 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.21 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.21 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.08 | |
| KOG1308|consensus | 377 | 98.07 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 98.04 | |
| KOG3617|consensus | 1416 | 97.97 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.92 | |
| KOG1585|consensus | 308 | 97.89 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.87 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.87 | |
| KOG0530|consensus | 318 | 97.84 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.84 | |
| KOG1258|consensus | 577 | 97.83 | ||
| KOG3617|consensus | 1416 | 97.8 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.79 | |
| KOG2300|consensus | 629 | 97.76 | ||
| KOG2396|consensus | 568 | 97.76 | ||
| KOG2300|consensus | 629 | 97.76 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.75 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.74 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.73 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.72 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 97.7 | |
| KOG1550|consensus | 552 | 97.67 | ||
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.66 | |
| KOG1914|consensus | 656 | 97.65 | ||
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.63 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.62 | |
| KOG0530|consensus | 318 | 97.62 | ||
| KOG1550|consensus | 552 | 97.62 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.59 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.57 | |
| KOG1310|consensus | 758 | 97.57 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 97.56 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.51 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.5 | |
| KOG0985|consensus | 1666 | 97.46 | ||
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.43 | |
| KOG1914|consensus | 656 | 97.43 | ||
| KOG2396|consensus | 568 | 97.41 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.4 | |
| KOG1839|consensus | 1236 | 97.4 | ||
| KOG3824|consensus | 472 | 97.36 | ||
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.34 | |
| KOG4507|consensus | 886 | 97.31 | ||
| KOG3824|consensus | 472 | 97.28 | ||
| KOG4814|consensus | 872 | 97.28 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.25 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 97.24 | |
| KOG1310|consensus | 758 | 97.23 | ||
| KOG3783|consensus | 546 | 97.23 | ||
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.22 | |
| KOG4814|consensus | 872 | 97.22 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 97.22 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.19 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.18 | |
| KOG2041|consensus | 1189 | 97.16 | ||
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.16 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.1 | |
| KOG3364|consensus | 149 | 97.1 | ||
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.04 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 97.04 | |
| KOG3364|consensus | 149 | 97.01 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.98 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.97 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.95 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.95 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.89 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.85 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.79 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.64 | |
| KOG1258|consensus | 577 | 96.62 | ||
| KOG0985|consensus | 1666 | 96.61 | ||
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.59 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.56 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.53 | |
| KOG2581|consensus | 493 | 96.48 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.41 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.36 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.36 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 96.3 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 96.29 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 96.24 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.19 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 96.18 | |
| KOG0890|consensus | 2382 | 96.16 | ||
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| KOG3616|consensus | 1636 | 96.01 | ||
| KOG0529|consensus | 421 | 95.97 | ||
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.95 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.88 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 95.87 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.79 | |
| KOG2422|consensus | 665 | 95.73 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.71 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 95.68 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 95.68 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.63 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 95.57 | |
| KOG3616|consensus | 1636 | 95.56 | ||
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.52 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 95.5 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 95.45 | |
| KOG1839|consensus | 1236 | 95.44 | ||
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.4 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 95.35 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.3 | |
| KOG1464|consensus | 440 | 95.27 | ||
| KOG0546|consensus | 372 | 95.21 | ||
| KOG0546|consensus | 372 | 95.17 | ||
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 95.07 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 95.05 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 95.03 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 94.94 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 94.92 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 94.83 | |
| KOG0890|consensus | 2382 | 94.52 | ||
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.49 | |
| KOG0529|consensus | 421 | 94.49 | ||
| KOG3807|consensus | 556 | 94.37 | ||
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.35 | |
| KOG2422|consensus | 665 | 94.22 | ||
| KOG2041|consensus | 1189 | 94.1 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.02 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 93.84 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 93.84 | |
| KOG3807|consensus | 556 | 93.71 | ||
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 93.69 | |
| KOG1463|consensus | 411 | 93.63 | ||
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 93.51 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 93.16 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 93.15 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 92.87 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.78 | |
| KOG0276|consensus | 794 | 92.44 | ||
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 92.29 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 92.26 | |
| KOG2114|consensus | 933 | 92.03 | ||
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 91.89 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.88 | |
| KOG1538|consensus | 1081 | 91.82 | ||
| KOG0686|consensus | 466 | 91.79 | ||
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.66 | |
| KOG0686|consensus | 466 | 91.52 | ||
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 91.42 | |
| KOG1538|consensus | 1081 | 91.33 | ||
| PF12854 | 34 | PPR_1: PPR repeat | 91.3 | |
| PF12854 | 34 | PPR_1: PPR repeat | 90.47 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 90.38 | |
| KOG4151|consensus | 748 | 90.32 | ||
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 90.12 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 90.11 | |
| KOG4151|consensus | 748 | 90.1 | ||
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 89.82 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 89.49 | |
| KOG2561|consensus | 568 | 89.4 | ||
| PF09797 | 365 | NatB_MDM20: N-acetyltransferase B complex (NatB) n | 89.0 | |
| COG5536 | 328 | BET4 Protein prenyltransferase, alpha subunit [Pos | 88.77 | |
| KOG3783|consensus | 546 | 88.61 | ||
| PF13041 | 50 | PPR_2: PPR repeat family | 88.44 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 88.41 | |
| PF04212 | 69 | MIT: MIT (microtubule interacting and transport) d | 88.26 | |
| PF09797 | 365 | NatB_MDM20: N-acetyltransferase B complex (NatB) n | 88.02 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 87.61 | |
| KOG2561|consensus | 568 | 87.32 | ||
| PF13041 | 50 | PPR_2: PPR repeat family | 87.13 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 87.11 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 87.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 86.9 | |
| KOG4279|consensus | 1226 | 86.81 | ||
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 86.2 | |
| cd02681 | 76 | MIT_calpain7_1 MIT: domain contained within Microt | 85.64 | |
| KOG0687|consensus | 393 | 85.5 | ||
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.64 | |
| KOG0276|consensus | 794 | 84.16 | ||
| PF02064 | 121 | MAS20: MAS20 protein import receptor; InterPro: IP | 83.86 | |
| cd02683 | 77 | MIT_1 MIT: domain contained within Microtubule Int | 83.45 | |
| KOG1464|consensus | 440 | 83.22 | ||
| KOG2114|consensus | 933 | 83.08 | ||
| KOG1920|consensus | 1265 | 82.1 | ||
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 81.9 | |
| cd02680 | 75 | MIT_calpain7_2 MIT: domain contained within Microt | 81.73 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 81.62 | |
| KOG0128|consensus | 881 | 81.43 | ||
| PHA02537 | 230 | M terminase endonuclease subunit; Provisional | 80.95 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 80.53 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 80.52 | |
| KOG2581|consensus | 493 | 80.5 | ||
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 80.08 |
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=185.23 Aligned_cols=200 Identities=19% Similarity=0.150 Sum_probs=115.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+....|..+.++-++|.+|+.+|..+-||..|+++++..|..+.++.++|.++-..|+..+|..+|.+++.+.|+++++.
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
.++|.++..+|++++|...|+++++..|+.... ++...|..++.+.++|.+|...|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 555555555555555555555555555554333 122223333446666666666666
Q ss_pred cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 175 YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+.|+++|.+++..+|...+++.++|.+|...|+..+|+..|+.++++.|+.+++..++..++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666655544
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=181.86 Aligned_cols=174 Identities=18% Similarity=0.122 Sum_probs=129.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
...-.+..++++.++|+++..+|.+++|..+|.++++.+|+.+.++.++|.+|.+.|++++|+.+|+.++++.|..++++
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
.++|.+|-.+|+.+.|+.+|.+++.++|...+. +.++|.+|...|+..+|+..|+.++++.|+.++++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA-----------hsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA-----------HSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH-----------HhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 666666666666666666666666666666555 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+++.++.-..++.+--+-+.+..++
T Consensus 495 Nllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 495 NLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999987766666555555555543
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=178.07 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=181.8
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..++..++.|..+|+++--+++++.|++.|++|++++|....+|..+|.=+.....++.|..+|++++..+|.+..+|+.
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
+|.+|.++++++.|.-+|++|++++|.+... ...+|.++.+.|+.++|+..+++|+.++|.++-..+..
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi-----------~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVI-----------LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhH-----------HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 9999999999999999999999999999888 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|.++..++++++|+..++++.+..|++..++..+++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK 602 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=178.65 Aligned_cols=176 Identities=17% Similarity=0.103 Sum_probs=169.4
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+..+..+..+|.++...|++++|+..|++++..+|+....+..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++...|++++|+..|+++++++|++... +..+|.++...|++++|+..++++++..|+++.++..+|.
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~-----------~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFS-----------HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999998877 9999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
++..+|++++|+..|++++.+.|.+..
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 999999999999999999999987543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=171.41 Aligned_cols=189 Identities=17% Similarity=0.220 Sum_probs=158.7
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|.....++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..++.
T Consensus 358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 44578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH---
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA--- 195 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--- 195 (240)
.+|.++..+|++++|+..++++++..|+++.. +..+|.++...|++++|+..|++++.+.|.....
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~-----------~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDV-----------YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 99999999999999999999999999998777 7788888888888888888888888877753221
Q ss_pred ---HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 196 ---HLYKARAM-HNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 196 ---~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+...+.++ ...|++++|+..+++++.++|++..++..+++++.
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL 553 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 22223333 33577888888888888877777777777776654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=141.60 Aligned_cols=176 Identities=21% Similarity=0.151 Sum_probs=162.4
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+.+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 203 (240)
++.+|++++|...|++++.. |..+. .+..+.|+|.|..+.|+++.|..+|+++++.+|+++.....++..+
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~Y~~--------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PAYGE--------PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CCCCC--------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 99999999999999999873 43322 2555999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 204 HNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
+..|++..|..+++......+...+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHH
Confidence 9999999999999998877665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=147.24 Aligned_cols=187 Identities=20% Similarity=0.154 Sum_probs=169.3
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
....+..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++...|++++|+..+++++...+. +.....+..+|.++...|++++|...+.++++.+|++...+..+|.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLY---------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhcccc---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 9999999999999999999985321 1123348899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
++...|++++|..++++++...|.++..+...+.+.
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999888877766665554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=151.20 Aligned_cols=190 Identities=16% Similarity=0.106 Sum_probs=156.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+..+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++.++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHH---------------HHhc-----cCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLA---------------IEQV-----RDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------------~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
++...|++++|+..++++++.+|+++... +... ..++..+ ..+.+....|+...+ ..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQW-GWNIVEFYLGKISEE-TLM 218 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcccc-HHHHHHHHccCCCHH-HHH
Confidence 99999999999999999999999986320 0000 0112222 245666667777554 233
Q ss_pred HHHh-------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Q psy17412 183 DKAL-------RLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP-TRRKLVENYT 234 (240)
Q Consensus 183 ~~~l-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~ 234 (240)
..+. +..|....+|+++|.++..+|++++|+.+|++++..+| +..+.+..+.
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALL 278 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3333 44566778999999999999999999999999999997 5555555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=165.08 Aligned_cols=200 Identities=18% Similarity=0.157 Sum_probs=143.0
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|..++.++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++.
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~ 148 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA 148 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 34456666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH------------------------------------------------
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL------------------------------------------------ 150 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------------------------------------ 150 (240)
.+|.++...|++++|+..+++++...|+++..
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 66666666666666666666555555443322
Q ss_pred ---------HHHhccCchHHHHHHHHHHHHhcccCc----hhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 151 ---------AIEQVRDSPVLYTNRALTLLHLQLYDP----VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 151 ---------~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
++...|.++..+..+|.++...|++++ |+..++++++.+|+++.++..+|.++...|++++|+..++
T Consensus 229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 229 QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223345566778888888888888885 7888888888888888888888888888888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHhhh
Q psy17412 218 ELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 218 ~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+++..+|+++.++..++.++.
T Consensus 309 ~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 309 QSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888877664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=162.38 Aligned_cols=188 Identities=15% Similarity=0.004 Sum_probs=165.3
Q ss_pred HHHhchhHHHHHHHhHhHHHHh---------CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh
Q psy17412 38 ERKARQDIADHFKANGNKAFQS---------GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
....+|+.+.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus 287 Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 287 CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566788888998888877643 3489999999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
++|+++.+++.+|.++...|++++|+..++++++++|.++.. +..++.+++..|++++|+..++++++.
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~-----------~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA-----------GITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh-----------HHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997665 666676777889999999999999877
Q ss_pred C-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 189 D-EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 189 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
. |+++..+..+|.++..+|++++|...+.++....|.+...+..++..
T Consensus 436 ~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 5 77888899999999999999999999999888888877766666544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=168.54 Aligned_cols=185 Identities=13% Similarity=0.034 Sum_probs=166.2
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+.....++..|..+...|++++|+.+|+++++..|+....+..++......|++++|+..++++++.+|+ +.++..+|
T Consensus 538 ~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA 616 (987)
T PRK09782 538 HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARA 616 (987)
T ss_pred cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 33334557788889999999999999999999999888777777777777789999999999999999996 88999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++.++|++++|+..+++++.++|+++.. +.++|.++...|++++|+..++++++.+|+++.++.++|.
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a-----------~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNY-----------QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999998887 9999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++..+|++++|+.+|++++.++|++..+....+.+.+
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 9999999999999999999999999888777776554
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=150.02 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=161.2
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
+.-.++...-+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+.++|+.+|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 34455666667888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
+.|.-++...=|+-+|+++.+.-|+++.. |..+|.||.++++.++|+++|++++.....+..++..+|.
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRl-----------w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRL-----------WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHH-----------HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999888 9999999999999999999999999999989999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q psy17412 202 AMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+|.++++..+|..+|++.++.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999983
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=155.17 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=176.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+...+|..+-++..+|.-+....+++.|..+|+.|+..+|.+-.+|+.+|.+|.+.++++.|.-.|++|++++|.+....
T Consensus 447 AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 447 AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred hhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
..+|.++.++|+.++|+..+++|+.++|.++-. .+..|.+++..+++++|+..+++.-++-|++..+++
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~-----------~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC-----------KYHRASILFSLGRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh-----------HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence 999999999999999999999999999999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
.+|.+|..+|+.+.|+..|.-+..++|.-.++...
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~~k 630 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQIK 630 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCCCccchhhHH
Confidence 99999999999999999999999999987664433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=155.65 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=151.3
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.....|.++.++..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+++.++
T Consensus 102 ~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 102 LLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 34556777778888888888888888888888888888888777777777777777777777777776666555444332
Q ss_pred H----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-------------
Q psy17412 118 L----------------------------------YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL------------- 150 (240)
Q Consensus 118 ~----------------------------------~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------- 150 (240)
. .++.++...|++++|+..+++++...|+++..
T Consensus 182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 2 22445555666666666666666666654432
Q ss_pred --------------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 151 --------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 151 --------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
++...|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|
T Consensus 262 ~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 233345666779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHhh
Q psy17412 217 RELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 217 ~~~~~~~p~~~~~~~~l~~~~ 237 (240)
++++..+|++......++.++
T Consensus 342 ~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 342 VQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHHhCccchHHHHHHHHHH
Confidence 999999998876665555544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=166.98 Aligned_cols=200 Identities=18% Similarity=0.146 Sum_probs=173.3
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH--------------HHHHHHHHHHHccCcCchHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV--------------LYTNRALTLLHLQLYDPVLPDC 103 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~ 103 (240)
.....|.++.++..+|.++...|++++|+..|+++++.+|++.. .....|.++...|++++|+..|
T Consensus 295 aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45567889999999999999999999999999999999987642 1235588899999999999999
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh------------------cc---------
Q psy17412 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ------------------VR--------- 156 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~------------------~~--------- 156 (240)
++++..+|+++.++..+|.++...|++++|+..|+++++++|++....... .+
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987651100 00
Q ss_pred ----CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 157 ----DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 157 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+++..+..
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a 534 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYA 534 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 0123355678888899999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHhh
Q psy17412 233 YTQAF 237 (240)
Q Consensus 233 l~~~~ 237 (240)
++..+
T Consensus 535 ~al~l 539 (1157)
T PRK11447 535 YGLYL 539 (1157)
T ss_pred HHHHH
Confidence 66544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=165.50 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=176.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHH-----------------------------
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRAL----------------------------- 88 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~----------------------------- 88 (240)
.....|..+.++..+|.++...|++++|++.|+++++.+|++..++..++.
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445678888999999999999999999999999999999998766655444
Q ss_pred -------------HHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH----
Q psy17412 89 -------------TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA---- 151 (240)
Q Consensus 89 -------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---- 151 (240)
++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|+++...
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445679999999999999999999999999999999999999999999999999999876530
Q ss_pred -----------------------------------------------------------HHhccCchHHHHHHHHHHHHh
Q psy17412 152 -----------------------------------------------------------IEQVRDSPVLYTNRALTLLHL 172 (240)
Q Consensus 152 -----------------------------------------------------------~~~~~~~~~~~~~la~~~~~~ 172 (240)
+...|.++..+..+|.++...
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 112345566788899999999
Q ss_pred cccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 173 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++++...|+++..+..++.++.
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888887777654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=156.44 Aligned_cols=180 Identities=14% Similarity=0.047 Sum_probs=160.4
Q ss_pred HHHHhHhHHHHh---CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc---------CcCchHHHHHHHHhcCcccHH
Q psy17412 48 HFKANGNKAFQS---GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ---------LYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 48 ~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~ 115 (240)
.++..|...+.. +++++|+..|+++++.+|+++.++..+|.+|...+ ++++|...++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 345566655433 46789999999999999999999999999887554 378999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
++..+|.++...|++++|+..++++++++|+++.. ++.+|.++...|++++|+..++++++++|.++..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-----------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI-----------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 99999999999999999999999999999999888 9999999999999999999999999999998887
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHhhh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKY-PTRRKLVENYTQAFE 238 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 238 (240)
...++.++...|++++|+..+++++... |+++..+..++.++.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~ 452 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS 452 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 7777778888999999999999999875 778888888887763
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=140.51 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=173.6
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+...+|....+|..+|.-|...++...|++.|++|++++|.+-.+|+.+|..|.-++...=|+-+|+++....|+++..|
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw 435 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLW 435 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhh-------cCh
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR-------LDE 190 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-------~~~ 190 (240)
..+|.||.++++.++|+++|++++.....+... +..+|.+|.++++.++|..+|++.++ ..|
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~-----------l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSA-----------LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccccchHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 999999999999999999999999998887777 99999999999999999999999988 456
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+...+...++..+.+.+++++|..+...++.-++.-.++...+..+
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei 550 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 6778888899999999999999999999998877666665554443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=160.18 Aligned_cols=184 Identities=18% Similarity=0.157 Sum_probs=163.4
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+.....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|...+++++...|++..++..+|
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 777 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45566777788888888888888888888888888876 56677888888888888888888888888888888888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++..+|++++|+..|+++++..|+++.. +..+|.++...|+ .+|+..++++++..|+++..+..+|.
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVV-----------LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 88888899999999999998888887776 9999999999999 88999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++...|++++|+.+++++++.+|.++.++..++.++.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999888765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=134.29 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=161.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--cccHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--EDNMKA 116 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 116 (240)
....|.....+..+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+..+++++... +.....
T Consensus 58 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 137 (234)
T TIGR02521 58 LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS 137 (234)
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHH
Confidence 455678889999999999999999999999999999999999999999999999999999999999999754 456678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+..+|.++...|++++|...+++++...|++... +..+|.++...|++++|...++++++..|.++..+
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRPES-----------LLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999988777 99999999999999999999999999988888899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..++.++...|+.++|..+.+.+....|
T Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 207 WLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=146.84 Aligned_cols=186 Identities=22% Similarity=0.256 Sum_probs=149.1
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...+.....++.+|..|....+-++....|.++..++|.++.+|+.+|.+++-++++++|+..|+++++++|++.-++..
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 34455555588888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh------hH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------NM 193 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~ 193 (240)
++.+.++++++++++..|+.+.+..|+.++. +...|.++..++++++|++.|++++++.|. ++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev-----------y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEV-----------YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchH-----------HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 8888888888888888888888888887777 888888888888888888888888888887 55
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 194 KAHLYKARAMH-NLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 194 ~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..+...|.+.. -.+++..|+..++++++++|....++..++.+
T Consensus 503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQF 546 (606)
T ss_pred hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 55555555433 24778888888888888888887777777765
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=147.76 Aligned_cols=189 Identities=14% Similarity=0.121 Sum_probs=170.8
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-------
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------- 110 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------- 110 (240)
+..++|.++++|..+|.+....++-..|+..++++++++|++..++..||.+|...|.-.+|+.++.+-+...
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 5678999999999999999999999999999999999999999999999999999998888888888775432
Q ss_pred ----------------------------------c--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 111 ----------------------------------E--DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 111 ----------------------------------~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
| .+++++..||.+|.-.|+|++|+++|+.|+...|++...
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---- 466 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---- 466 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH----
Confidence 2 345678899999999999999999999999999999888
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR-------- 226 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------- 226 (240)
|..+|..+....+.++|+..|.+|+++.|..+++++++|..++.+|.|++|.++|-.++.+.+.+
T Consensus 467 -------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~ 539 (579)
T KOG1125|consen 467 -------WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPM 539 (579)
T ss_pred -------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999876541
Q ss_pred --HHHHHHHHHhh
Q psy17412 227 --RKLVENYTQAF 237 (240)
Q Consensus 227 --~~~~~~l~~~~ 237 (240)
..+|..|..++
T Consensus 540 ~se~iw~tLR~al 552 (579)
T KOG1125|consen 540 ASENIWQTLRLAL 552 (579)
T ss_pred chHHHHHHHHHHH
Confidence 24676666443
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=144.49 Aligned_cols=170 Identities=19% Similarity=0.162 Sum_probs=165.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
-+.++...|..++-.|++..|.+.|+.+|.++|.....|..+|.+|...++.++....|.++..++|.++++|+.+|++.
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
+-++++++|+..|++++.++|++... +..++...++++++++++..|+.+.+..|+.++++...|.++.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~-----------~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYA-----------YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 99999999999999999999999888 9999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q psy17412 205 NLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~p~ 225 (240)
.++++++|.+.|..++.+.|.
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999998
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=157.96 Aligned_cols=198 Identities=21% Similarity=0.170 Sum_probs=168.2
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..|..+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|...+++++...|.+..++..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45667788888999999999999999999999999999888888999999999999999999999998888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcccCc
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQLYDP 177 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (240)
+.++...|++++|+..++++++.+|.+... .....|.++..+..+|.++...|++++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 998888999999999999888888876543 223345667778888999988899999
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 178 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|+..++++++..|.++..+..+|.++...|++++|...|++++..+|++...+..++.++.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999988888888888889999989999999999999998888888888777776653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-21 Score=146.26 Aligned_cols=199 Identities=18% Similarity=0.119 Sum_probs=178.0
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...|..+..|+..|..|+..|++.+|.++|.++..++|..+.+|...|..+...|..++|+..|.+|-++.|..-.....
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999888778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HH---Hhc-c---CchHHHHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AI---EQV-R---DSPVLYTNRALTL 169 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~---~~~-~---~~~~~~~~la~~~ 169 (240)
+|.-|..++++.-|.+.|.+++.+.|.++-. ++ ... + .-...+.++|.++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 9999999999999999999999999988765 01 000 0 0123589999999
Q ss_pred HHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+++++++|+.++++++.+.|.++.++..+|.+|..+|+.+.|+++|.+++.+.|++..+...|+.+++
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888888887765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-20 Score=144.06 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=107.7
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
...|.++..+..+|..+...|++++|+..+++++...+.. ..++..+|.+|...|++++|...|+++++..|.+..
T Consensus 63 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 142 (389)
T PRK11788 63 KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEG 142 (389)
T ss_pred hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHH
Confidence 3455666667777777777777777777777666542221 235566677777777777777777777766666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----------------------------HHHhccCchHHHHHHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------------------AIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~~~~la~ 167 (240)
++..++.++...|++++|+..++++++..|.+... .+...|.....+..+|.
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 66667777777777777777777766665543211 01111122223555555
Q ss_pred HHHHhcccCchhhHHHHHhhcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
++...|++++|++.++++++.+|.+ ..++..++.++...|++++|+..++++++..|+.
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 5555555555555555555554443 2334455555555555555555555555555544
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=146.59 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=174.1
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
-+..|..+++.|+..+|.-.|+.++..+|++.++|..||.++...++-..|+..++++++++|++..++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHH------------------------------HHHhcc--CchHHHHHHHHHHHHhcccC
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKL------------------------------AIEQVR--DSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~------------------------------~~~~~~--~~~~~~~~la~~~~~~~~~~ 176 (240)
.-.+|..++.+.+...|..... +....+ .++++...||.+|.-.|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999998877543221 233334 68999999999999999999
Q ss_pred chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 177 PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 177 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+|+.+|+.+|...|++...|..+|-.+..-.+..+|+..|.+++++.|....++.+++.+.
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999998888654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=137.01 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=158.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH--
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK-- 115 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 115 (240)
..+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4566788999999999999999999999999999999875 57899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCchHHH--H----HhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 116 -AHLYKARAMHSL--------GQREEAKEYVRQLVEKYPTRRKLA--I----EQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 116 -~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+++.+|.++... |++++|+..++++++.+|++.... . ............+|.++...|++.+|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 789999999886 889999999999999999986541 0 0001111223578899999999999999
Q ss_pred HHHHHhhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 181 DCDKALRLDED---NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 181 ~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
.+.++++..|+ .+.+++.+|.++..+|++++|..+++.+....|+
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999775 4689999999999999999999999888777663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=142.29 Aligned_cols=184 Identities=16% Similarity=0.053 Sum_probs=150.8
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-----VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
.+.....+..++.++...|++++|++.++++++..|.+. ..+..+|.++...|++++|+..++++++..|+...+
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 555667777888888888888888888888887766542 245677888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+..+|.++...|++++|+..++++++..|.+. ...+..++.++...|++++|+..++++++..|+... .
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~ 285 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYL----------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-L 285 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-H
Confidence 88888888888888888888888888777642 223788999999999999999999999999998654 4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..++.++...|++++|+..++++++.+|++......+...
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 8899999999999999999999999999988766555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-20 Score=153.84 Aligned_cols=186 Identities=16% Similarity=0.101 Sum_probs=161.9
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...|+.. ....+|..+...|++++|+..|++++...|.. ..+..+|.++...|++++|..+++++++..|........
T Consensus 504 ~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~ 581 (987)
T PRK09782 504 QRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW 581 (987)
T ss_pred HhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH
Confidence 3344433 35566777788999999999999987765554 456788899999999999999999999998888877777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
++.....+|++++|+..++++++++|+ ... +.++|.++.+.|++++|+..+.+++..+|+++.++.++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a-----------~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL 649 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-ANA-----------YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL 649 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 777777789999999999999999996 666 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|.++...|++++|+..|+++++.+|+++.++..++.++..
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987753
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=141.67 Aligned_cols=191 Identities=33% Similarity=0.467 Sum_probs=177.7
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
....|+..++.|+|+.|+.+|..++.++|.+...+.++..+|..+|+|++|++.-.+.++++|+.+..|..+|..+..+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHH----------------------------------------------------------
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKL---------------------------------------------------------- 150 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~---------------------------------------------------------- 150 (240)
+|++|+..|.+.++.+|++...
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999999999987654
Q ss_pred --------------------------------------------------------------------------------
Q psy17412 151 -------------------------------------------------------------------------------- 150 (240)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (240)
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17412 151 -------------------------------------------------------------------------------- 150 (240)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (240)
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------------HHHhccCchHHHHHHHHHHHH
Q psy17412 151 -----------------------------------------------------------AIEQVRDSPVLYTNRALTLLH 171 (240)
Q Consensus 151 -----------------------------------------------------------~~~~~~~~~~~~~~la~~~~~ 171 (240)
++...|+++..|.++|.||.+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 566678899999999999999
Q ss_pred hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 172 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+|.+..|+...+.+++++|++..+|+..|.++..+.+|++|.+.|.++++.+|++.++...+.+|+++
T Consensus 405 L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888763
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-19 Score=121.33 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=170.7
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMK 115 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 115 (240)
....+|....+|..+|.+|...|+.+.|.+.|+++++++|++.+++.+.|..++..|++++|...|++++.. .+..+.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~ 140 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSD 140 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcch
Confidence 567899999999999999999999999999999999999999999999999999999999999999999974 255678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
.+-++|.|..++|+++.|..+|+++++.+|+.+.. ...++...++.|+|..|..++++.....+-....
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~-----------~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~s 209 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA-----------LLELARLHYKAGDYAPARLYLERYQQRGGAQAES 209 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH-----------HHHHHHHHHhcccchHHHHHHHHHHhcccccHHH
Confidence 99999999999999999999999999999999888 9999999999999999999999998887777888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
+....++....|+-+.+-.+=.+..+.+|.+++....
T Consensus 210 L~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 210 LLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 8888889999999999999999999999998876543
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=125.62 Aligned_cols=192 Identities=21% Similarity=0.243 Sum_probs=173.2
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.++..++..+.+|..++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+..-|+..+.+++++.|+..-+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45668888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH--------------------------------------HHHhccCchHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL--------------------------------------AIEQVRDSPVLY 162 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------------------~~~~~~~~~~~~ 162 (240)
|.+++++|.+++|...|+.++..+|++... .+...|.++.++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 999999999999999999999999965433 233346677888
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
...+.||...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 8899999999999999999999999888899999999999999999999999999999999988654433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-19 Score=131.44 Aligned_cols=191 Identities=16% Similarity=0.102 Sum_probs=172.7
Q ss_pred HHHhchhHHHHHHHhHhHHHHhC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCc--CchHHHHHHHHhcCcccH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSG-QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY--DPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~ 114 (240)
....+|.+..+|..+|.++...| ++++++..+++++..+|++..+|..++.+....|+. ++++.+++++++.+|.+.
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy 142 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY 142 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH
Confidence 45678999999999999999998 689999999999999999999999999999999874 678999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh---ccc----CchhhHHHHHhh
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL---QLY----DPVLPDCDKALR 187 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~----~~A~~~~~~~l~ 187 (240)
.+|..++.++...|++++++..+.++++.+|.+..+ |..++.+..+. |.+ ++++.+..+++.
T Consensus 143 ~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA-----------W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~ 211 (320)
T PLN02789 143 HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA-----------WNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL 211 (320)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH-----------HHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888 99999888776 333 368888899999
Q ss_pred cChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 188 LDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 188 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
.+|++..+|..++.++.. +++..+|...+.+++...|.++.+...++.++..
T Consensus 212 ~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 212 ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 999999999999999988 5667889999999999999999888888887753
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=133.78 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=160.9
Q ss_pred HhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-CcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH-
Q psy17412 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR- 130 (240)
Q Consensus 53 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~- 130 (240)
-.++...+.+++|+..+.+++..+|++..+|..++.++..+| ++++++..+.++++.+|++..+|..++.+...+|+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 344567789999999999999999999999999999999998 689999999999999999999999999999999874
Q ss_pred -HHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHc---
Q psy17412 131 -EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL--- 206 (240)
Q Consensus 131 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--- 206 (240)
++++..++++++.+|++..+ |..++.++...|+++++++++.++++.+|.+..+|..++.+...+
T Consensus 124 ~~~el~~~~kal~~dpkNy~A-----------W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHA-----------WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHH-----------HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 78899999999999999888 999999999999999999999999999999999999999998776
Q ss_pred CCH----HHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 207 GQR----EEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 207 g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|.+ ++++.+..+++..+|++..+|..++.++..
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 333 578899999999999999999998887753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=119.81 Aligned_cols=123 Identities=17% Similarity=0.085 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchh
Q psy17412 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179 (240)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (240)
...++++++++|++ ++.+|.++...|++++|+..|++++..+|.+... +..+|.++...|++++|+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a-----------~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA-----------HIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH-----------HHHHHHHHHHHhhHHHHH
Confidence 34566666666654 4455666666666666666666666666666555 666666666666666666
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..|.+++..+|+++.+++++|.++..+|++++|+..|++++...|+++..+...+.+
T Consensus 79 ~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 79 NFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666555443
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=132.04 Aligned_cols=191 Identities=17% Similarity=0.116 Sum_probs=121.0
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
++........++.+..++.+|.+..+...|+..|.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+.+
T Consensus 246 lqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 246 LQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 33333344444555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh---hh
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE---DN 192 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~ 192 (240)
+...+|..|+.-++.+-|+.+|++++.+.-.++ .++.++|.|++..++++-++..|++++.... .-
T Consensus 326 aiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp-----------eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 326 AIACIAVGYFYDNNPEMALRYYRRILQMGAQSP-----------ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred eeeeeeeccccCCChHHHHHHHHHHHHhcCCCh-----------HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 444445555555555555555555555544444 4488888888888888888888888876533 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.++|+++|.+....|++.-|..+|+-++..++++.++..+++.+-
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA 439 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence 678888888888888888888888888888888888888887653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=137.96 Aligned_cols=183 Identities=23% Similarity=0.227 Sum_probs=94.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--cccHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--EDNMKAHLYKA 121 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 121 (240)
..+..+..++.. ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 344555555555 577777777777777766553 34555566666777777777777777765444 45666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++.+.|++++|+..++++++.+|+++.. ...++.++...|+++++...+....+..|+++..+..+|.
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~-----------~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDA-----------RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHH-----------HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 77777777777777777777777777666 7777777777777777777776666666666677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 202 AMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
++..+|++++|+.+|++++..+|+++.+...++.++.+
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred Hhcccccccccccccccccccccccccccccccccccc
Confidence 77777777777777777777777777777777766643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=121.57 Aligned_cols=125 Identities=8% Similarity=-0.025 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 67 VQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
..++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566666666653 4456677777777777777777777777777777777777777777777777777777777776
Q ss_pred chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
++.. ++++|.++...|++++|+..|.++++..|+++..+..++.+...
T Consensus 91 ~~~a-----------~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEP-----------VYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 6666 77777777777777777777777777777777666666665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-20 Score=136.81 Aligned_cols=170 Identities=26% Similarity=0.296 Sum_probs=122.8
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV--RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
....+..+.....++...++++++...++++.... +.++.+|..+|.++.+.|+.++|+..++++++.+|+++.+...
T Consensus 106 ~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 106 RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp ------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44566777778888999999999999999977654 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
++.++...|+++++...++...+..|.++.. +..+|.++..+|++++|+.+++++++.+|+++.++..+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDL-----------WDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH-----------CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCcCHHHH-----------HHHHHHHhcccccccccccccccccccccccccccccc
Confidence 9999999999999999998888887777766 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|.++...|+.++|..++++++..
T Consensus 255 a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 255 ADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHT------------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999988753
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=140.82 Aligned_cols=201 Identities=13% Similarity=0.141 Sum_probs=178.4
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
-....|+++..++..|.+.+..|+|..|+.+|++++..+|.. +.....+|.|+.++|+.+.|+..|.++++++|.++.+
T Consensus 156 Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 156 VLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred HHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 456789999999999999999999999999999999999976 5677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCchHH-----------------------HHHhc---cCchHHHHHHHH
Q psy17412 117 HLYKARAMHSLG---QREEAKEYVRQLVEKYPTRRKL-----------------------AIEQV---RDSPVLYTNRAL 167 (240)
Q Consensus 117 ~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~---~~~~~~~~~la~ 167 (240)
+..||.+-.... .+..++..+.++...++.+|.+ ++... +..+..++.+|.
T Consensus 236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999998776554 5678999999999999999887 11111 123466899999
Q ss_pred HHHHhcccCchhhHHHHHhhcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+|..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+.+.|+.+|++++...|++.+....++.++.
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 9999999999999999999999988 7789999999999999999999999999999999999988888765
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=134.31 Aligned_cols=203 Identities=19% Similarity=0.117 Sum_probs=178.4
Q ss_pred HHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH
Q psy17412 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
+-...+|..+.+|+.+|.+|..+|+.+++....-.|-.++|++...|..++....++|++++|.-+|.++++.+|.+.+.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~ 243 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL 243 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----------------------------------------------
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------------------------- 150 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------------------------- 150 (240)
.+..+.++.++|+...|...+.+++...|.....
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~a 323 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILA 323 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 9999999999999999999999999998822110
Q ss_pred --------------------------------------------------------------------------------
Q psy17412 151 -------------------------------------------------------------------------------- 150 (240)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (240)
T Consensus 324 el~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l 403 (895)
T KOG2076|consen 324 ELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL 403 (895)
T ss_pred HHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH
Confidence
Q ss_pred HHHh--ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 151 AIEQ--VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 151 ~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
.... ..+.++.+..++..+...|+|.+|+.++..+....+. +..+|+.+|.||..+|.+++|+.+|++++...|++.
T Consensus 404 ~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 404 VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch
Confidence 0000 1235688999999999999999999999999887664 467899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q psy17412 228 KLVENYTQAFEQ 239 (240)
Q Consensus 228 ~~~~~l~~~~~~ 239 (240)
+++..++.++.+
T Consensus 484 D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 484 DARITLASLYQQ 495 (895)
T ss_pred hhhhhHHHHHHh
Confidence 999999888764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=120.54 Aligned_cols=127 Identities=17% Similarity=0.112 Sum_probs=102.4
Q ss_pred ccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH-HH
Q psy17412 93 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL-LH 171 (240)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~ 171 (240)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++++.|+++.. +..+|.++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~-----------~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL-----------YAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHh
Confidence 5566777888888888888888888888888888888888888888888888887777 88888864 56
Q ss_pred hcc--cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 172 LQL--YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 172 ~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
.|+ +++|...++++++.+|+++.++..+|..+...|++++|+.+|+++++..|.+.+-.
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 666 47888888888888888888888888888888888888888888888877665433
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-19 Score=127.26 Aligned_cols=189 Identities=10% Similarity=-0.033 Sum_probs=176.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
-....|.+.-.+..++.++...+++++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.++..-.+++.+
T Consensus 282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 34567888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
.++|.|++..++++-++..|++++....+.... +++|+++|.+....|++.-|..+|.-++..++++..++.
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a--------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn 433 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA--------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN 433 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchh--------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH
Confidence 999999999999999999999999987765544 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
++|.+-.+.|+.++|..++..+....|+-.+...+++
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999998777666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-18 Score=126.44 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=133.9
Q ss_pred HhCCHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Q psy17412 58 QSGQYEAALVQYDKAIEQVR----DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 133 (240)
..+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567889999999997544 23678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHH
Q psy17412 134 KEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAK 213 (240)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 213 (240)
+..|+++++++|++... +.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+
T Consensus 118 ~~~~~~Al~l~P~~~~a-----------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~ 185 (296)
T PRK11189 118 YEAFDSVLELDPTYNYA-----------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAK 185 (296)
T ss_pred HHHHHHHHHhCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHH
Confidence 99999999999999888 9999999999999999999999999999998742222 22345678899999
Q ss_pred HHHHHHHHhC
Q psy17412 214 EYIRELVEKY 223 (240)
Q Consensus 214 ~~~~~~~~~~ 223 (240)
..+.+.....
T Consensus 186 ~~l~~~~~~~ 195 (296)
T PRK11189 186 ENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhhC
Confidence 9997766543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-17 Score=137.17 Aligned_cols=170 Identities=13% Similarity=0.066 Sum_probs=154.7
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc--------------
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-------------- 112 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 112 (240)
.+|..+...|++++|+..|+++++..|.+ ......++.++...|++++|+..++++....|.
T Consensus 277 ~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 277 WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 35889999999999999999999888765 345677888889999999999999999988762
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 113 -NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 113 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
...++..+|.++...|++++|+..+++++...|.+... +..+|.++...|++++|++.+++++..+|+
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l-----------~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL-----------RIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 24577889999999999999999999999999999887 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
+..+++.+|.++...|++++|...++++++..|+++.+..
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999999987643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-17 Score=136.57 Aligned_cols=186 Identities=12% Similarity=0.010 Sum_probs=162.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..|..+...+..+...++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 35567889999999999999999999999999999999964444888899999999999999999995445555566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
|.++..+|++++|+..|+++++.+|+++.. +..++.++...++.++|++.++++...+|+.... ..++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~-----------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~la 176 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL-----------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLS 176 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHH
Confidence 889999999999999999999999999887 8888999999999999999999999999985554 5666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 201 RAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.++...++..+|+..+++++..+|+++++...+..++.
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ 214 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 66666888878999999999999999999888877654
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-18 Score=120.75 Aligned_cols=124 Identities=29% Similarity=0.385 Sum_probs=116.4
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
....++.+-..|+-+++.++|.+|+..|.+||+++|.++..|.+++.+|.++|.++.|++.++.++.++|.+.++|..+|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
.+|..+|++.+|+..|+++++++|++... +.+|..+-.+.++..
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~-----------K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESY-----------KSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHH-----------HHHHHHHHHHhcCCC
Confidence 99999999999999999999999999877 888887777776665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=115.24 Aligned_cols=195 Identities=16% Similarity=0.122 Sum_probs=163.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 112 (240)
-...++...+..+.+|+.+.+.|..+.||.+-+..+. .|+. ..+...+|.-|+..|-++.|...|........-
T Consensus 61 ~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef 139 (389)
T COG2956 61 MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF 139 (389)
T ss_pred HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh
Confidence 4556788899999999999999999999988766554 3443 457888999999999999999999988876555
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
-..+...+..+|....+|++|++.-++..++.++.... ..+..+..++..+....+.+.|+..+.++++.+|++
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c 213 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV------EIAQFYCELAQQALASSDVDRARELLKKALQADKKC 213 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc
Confidence 56788889999999999999999999999998876554 335568888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHhhhc
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR-RKLVENYTQAFEQ 239 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~ 239 (240)
+.+-..+|.+....|++..|++.++.+++.+|+. +++...+..++.+
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 5566666666543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-17 Score=131.66 Aligned_cols=164 Identities=8% Similarity=-0.020 Sum_probs=145.7
Q ss_pred HHHHhCCHHHHHHHHHHH---HHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q psy17412 55 KAFQSGQYEAALVQYDKA---IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQRE 131 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 131 (240)
+....+....+.+.+-++ ...+|+++.++.++|.+....|.+++|...++.++++.|++..++..++.++.++++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~e 137 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIE 137 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHH
Confidence 334444444444333333 44578889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHH
Q psy17412 132 EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREE 211 (240)
Q Consensus 132 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 211 (240)
+|+..+++++...|++... ++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++
T Consensus 138 eA~~~~~~~l~~~p~~~~~-----------~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 138 AGRAEIELYFSGGSSSARE-----------ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHHHHHhhcCCCCHHH-----------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHH
Q psy17412 212 AKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 212 A~~~~~~~~~~~p~~~~~ 229 (240)
|...|++++....+....
T Consensus 207 A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 207 ARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHhhCcchHH
Confidence 999999999887665443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=120.25 Aligned_cols=199 Identities=17% Similarity=0.134 Sum_probs=175.5
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+...+.-++.++.+.|++.+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+.+|-+...+--++.+++
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455667888999999999999999999999999999888889999999999999999999999999887777889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
+.++.+|..+.+..+|++++-++..+-|+++.. ....+|.+....-.+|..|....-
T Consensus 562 ~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999998876 122234556777888999999999
Q ss_pred cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 175 YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+++|+.+|+++--+.|+.......++.|+.+.|+|.+|...|+...+..|.+.+....+.++
T Consensus 642 ~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999999999998887777665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=109.15 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=103.1
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+.+++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.. +..+|.++...|++++|..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~la~~~~~~~~~~~A~~ 72 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY-----------WLGLAACCQMLKEYEEAID 72 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888887777 8888888888888888888
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
.++++++.+|+++..++.+|.++...|++++|+..++++++.+|++.....
T Consensus 73 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 73 AYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 888888888888888888888888889999999999888888888876443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=129.07 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=173.1
Q ss_pred HHHHhchhHHHHHHHhHhHHHHhC---CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC---
Q psy17412 37 EERKARQDIADHFKANGNKAFQSG---QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--- 110 (240)
Q Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 110 (240)
.....+|..+.++..+|.+..... .+..+...+.++...++.+|.+...++..++..|+|..+......++...
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 345667888899999888877655 47789999999999999999999999999999999999999999988765
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
+--++.++.+|.++..+|+|++|..+|.++++.+|++... .++.+|++++..|+++.|..+|+++++..|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l----------~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL----------PLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc----------cccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 3335679999999999999999999999999999997222 289999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhcC
Q psy17412 191 DNMKAHLYKARAMHNLG----QREEAKEYIRELVEKYPTRRKLVENYTQAFEQE 240 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 240 (240)
++......+|.+|...+ ..+.|..+..++++..|.+.++|..+++++++.
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 99999999999999886 678999999999999999999999999998863
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-17 Score=115.37 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=117.6
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH-HHcCC--HHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM-HSLGQ--REEAKE 135 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~--~~~A~~ 135 (240)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHH
Q psy17412 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 194 (240)
.++++++.+|++... ++.+|..++..|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~a-----------l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTA-----------LMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999888 999999999999999999999999999886543
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=115.40 Aligned_cols=190 Identities=15% Similarity=0.161 Sum_probs=166.9
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
..+......++..|++..|+++....++..|-++..+..++.||...|+...|+..++.+-++..++.+.++.++.+++.
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 34445566677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHH-----------------------------------HHHhccCch----HHHHHHHH
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKL-----------------------------------AIEQVRDSP----VLYTNRAL 167 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~-----------------------------------~~~~~~~~~----~~~~~la~ 167 (240)
.|+.+.++...+.+++++|++... .+...|..+ .....+..
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 999999999999999999987544 122223322 33445677
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
|+...+++.+|+..+.+++..+|+++.++...+.+|+....|+.|+..|+++.+.++++..+...+.++
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999999999999888776553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-17 Score=117.23 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=135.3
Q ss_pred cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHH
Q psy17412 76 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM---KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAI 152 (240)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 152 (240)
++..+..++.+|..++..|++++|+..+++++...|+++ .+++.+|.++...|++++|+..++++++..|+++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-- 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-- 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch--
Confidence 345678999999999999999999999999999999875 588999999999999999999999999999987764
Q ss_pred HhccCchHHHHHHHHHHHHh--------cccCchhhHHHHHhhcChhhHHHH-----------------HHHHHHHHHcC
Q psy17412 153 EQVRDSPVLYTNRALTLLHL--------QLYDPVLPDCDKALRLDEDNMKAH-----------------LYKARAMHNLG 207 (240)
Q Consensus 153 ~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~-----------------~~la~~~~~~g 207 (240)
...++.+|.++... |++++|++.++++++.+|++...+ ..+|.++...|
T Consensus 107 ------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 107 ------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred ------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34588999999876 889999999999999999875432 36788899999
Q ss_pred CHHHHHHHHHHHHHhCCCc---HHHHHHHHHhhh
Q psy17412 208 QREEAKEYIRELVEKYPTR---RKLVENYTQAFE 238 (240)
Q Consensus 208 ~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 238 (240)
++.+|+..+++++...|++ ++++..++.++.
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYL 214 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 9999999999999998765 478888887765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=110.53 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=159.2
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
......+|.+... ...+..+...|+-+.+..+..++...+|.+..+....|...+..|++..|+..++++..+.|++++
T Consensus 57 ~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~ 135 (257)
T COG5010 57 GAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE 135 (257)
T ss_pred HHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence 3455667777888 889999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+|..+|.+|.+.|++++|...|.+++++.|+++.. ..|+|..+.-.|+++.|..++..+....+.+..+
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~-----------~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v 204 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI-----------ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV 204 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh-----------hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH
Confidence 99999999999999999999999999999999888 9999999999999999999999999988889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
..+++.+....|++++|.....+
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999887654
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=121.18 Aligned_cols=181 Identities=22% Similarity=0.239 Sum_probs=162.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH----------
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---------- 115 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------- 115 (240)
...-...+.++...|++++|...--..+++++.+..+++..|.|++..++.+.|+..|++++.++|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 3455667888999999999999999999999999999999999999999999999999999999987643
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 116 --AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 116 --~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
.+...|.-.++.|++.+|.+.|..++.++|++... .+.+|.++|.+..++|+..+|+..++.+++++|...
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-------naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-------NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-------hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 56778899999999999999999999999997654 456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
.++...|.++..++++++|++.|+++++...+ .+.+..+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 99999999999999999999999999998766 44444333
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=106.98 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=165.5
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..++....+.....+....|+.+-|..++++.....|.+..+-...|..+...|++++|+++|+..++-+|.+...+...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34556667777788888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
-.+...+|+..+|++.+...++..+.|.++ |..++.+|...|+|++|.-+++.++-..|.++..+..+|
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EA-----------W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEA-----------WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHH-----------HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 889999999999999999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 201 RAMHNLG---QREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 201 ~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
.+++-+| +..-|.++|.+++++.|.+...+..+-
T Consensus 196 e~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 196 EVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 9988877 556799999999999997766655543
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=122.47 Aligned_cols=191 Identities=15% Similarity=0.062 Sum_probs=133.7
Q ss_pred HHHHHhHhHHHHh--CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQS--GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 47 ~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
.+-.++...++-+ .++..|..+-+.++..+.-++.+..+.|.+-+..|++++|.+.|+.++..+....++++++|..+
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA 534 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH
Confidence 3344444454543 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
..+|+.++|+.+|-+.-.+--++... +....|.+|.++..+|.+|-+.|+-.+|.++
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 99999999999998877665555554 1222344455555555555555555555555
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 182 CDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 182 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+-......|.+.+..-++|..|+...-.++|+.+|+++--+.|+...+...++.|+
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 54445555555555555555555555555555566555555555555444444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-15 Score=116.04 Aligned_cols=192 Identities=14% Similarity=0.082 Sum_probs=148.9
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
-.+...+......|+++.|..++.++.+..|+... .....+.++...|++++|...+++..+..|+++.++..++.++.
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33444466669999999999999999999998753 33445899999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHH---------------------------H----HHhccCchHHHHHHHHHHHHhcc
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKL---------------------------A----IEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------~----~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
..|++++|+..+.+..+..+.++.. . ....++++.+...++..+...|+
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 9999999998888888765543221 0 01233466667777777777777
Q ss_pred cCchhhHHHHHhh-------------------------------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 175 YDPVLPDCDKALR-------------------------------LDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 175 ~~~A~~~~~~~l~-------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.++|...++++++ .+|+++..+..+|.++...|++++|.++|+++++..
T Consensus 279 ~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 279 HDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666666666555 346667778888999999999999999999999998
Q ss_pred CCcHHHHHHHHHhhhc
Q psy17412 224 PTRRKLVENYTQAFEQ 239 (240)
Q Consensus 224 p~~~~~~~~l~~~~~~ 239 (240)
|++.. +..+++++++
T Consensus 359 P~~~~-~~~La~~~~~ 373 (398)
T PRK10747 359 PDAYD-YAWLADALDR 373 (398)
T ss_pred CCHHH-HHHHHHHHHH
Confidence 88755 3456666553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-16 Score=129.74 Aligned_cols=184 Identities=9% Similarity=-0.048 Sum_probs=153.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----HHHHHHHHHHHHHcCC
Q psy17412 55 KAFQSGQYEAALVQYDKAIEQVRDSP-VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYKARAMHSLGQ 129 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~ 129 (240)
.++..|++++|+..|+++++..|..+ .+...+|.+|...|++++|+..|++++...|.+ ......++.++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 45688999999999999998864322 234446999999999999999999999888765 3567778888999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHH--HHhccCc--hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLA--IEQVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
+++|+..++++....|...... ....|++ ..++..+|.++...|++++|+..+++++...|++..++..+|.++..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999999988643220 1112221 24578899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 206 LGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.|++++|+..+++++..+|++..++...+.+..
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 999999999999999999999888887776543
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=121.54 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=165.8
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc----------------------------------CCChHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV----------------------------------RDSPVLYTNRA 87 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~la 87 (240)
...+.+.+...+..++..++|.+..+..+..++.+ |+.+..|+..|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34455666666666666777777666666666654 55567899999
Q ss_pred HHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------
Q psy17412 88 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------- 150 (240)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------- 150 (240)
..|...|++.+|..+|.|+..++|....+|...|..+...|..++|+.+|..|-++.|.....
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999999999999999999999999999998875432
Q ss_pred ------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh-------hhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 151 ------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-------DNMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 151 ------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
+....|.+|.++..+|.+.+..+.|.+|..+|+.++..-+ .....+.++|.++.+++.+++|+.+++
T Consensus 400 e~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 5666789999999999999999999999999999984322 245678999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHhh
Q psy17412 218 ELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 218 ~~~~~~p~~~~~~~~l~~~~ 237 (240)
+++.+.|.++.++..++-++
T Consensus 480 ~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIY 499 (611)
T ss_pred HHHHcCCCchhHHHHHHHHH
Confidence 99999999999998888765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-17 Score=107.14 Aligned_cols=117 Identities=20% Similarity=0.106 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 67 VQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
+.|++++..+|++......+|.++...|++++|...+++++..+|.++.++..+|.++..+|++++|...++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35666677777776667777777777777777777777777777777777777777777777777777777777777776
Q ss_pred chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHH
Q psy17412 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 194 (240)
++.. ++.+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRP-----------YFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 6665 777777777777777777777777777766544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=114.40 Aligned_cols=111 Identities=26% Similarity=0.285 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHH
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 194 (240)
+-+..-|.-+...++|.+|+..|.+||+++|+++.. |.+.+.+|.++|.++.|++.++.++.++|....
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy-----------ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY-----------YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH-----------HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence 456667888899999999999999999999998887 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+|..+|.+|..+|++.+|++.|++++.++|+++.++..|..+
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999888877654
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=118.66 Aligned_cols=200 Identities=15% Similarity=0.125 Sum_probs=166.4
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
+..........+.|..-+.....+++.++|+++++++++.+|+....|..+|.++.++++.+.|.+.|...++..|..+.
T Consensus 641 lakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 641 LAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 33444456677788888888888888899999999999999988888888999988888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------------------------
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL--------------------------------------------- 150 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------------------------- 150 (240)
.|..++.+-...|+...|...++++.-.+|.+...
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 88888888888888888888888888888877655
Q ss_pred --------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 151 --------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 151 --------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
++.....++.++..+|..+....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.++...
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344445678888889999999999999999999999999999999988888999999888888999999999
Q ss_pred CCCcHHHHHHHHH
Q psy17412 223 YPTRRKLVENYTQ 235 (240)
Q Consensus 223 ~p~~~~~~~~l~~ 235 (240)
.|.+...|....+
T Consensus 881 EP~hG~~W~avSK 893 (913)
T KOG0495|consen 881 EPTHGELWQAVSK 893 (913)
T ss_pred CCCCCcHHHHHhh
Confidence 9988887776554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-15 Score=115.78 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=152.0
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..+.....+...|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++...+..|+++.++..
T Consensus 113 ~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~l 192 (409)
T TIGR00540 113 HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKL 192 (409)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455566677889999999999999999999999988875 466667999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------HHHhcc----CchHHHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------AIEQVR----DSPVLYTNRALT 168 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------~~~~~~----~~~~~~~~la~~ 168 (240)
++.++...|++++|...+.+..+....++.. .....| +++.++..++..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 9999999999999999999998764332221 112223 467888888888
Q ss_pred HHHhcccCchhhHHHHHhhcChh------------------------------------hH--HHHHHHHHHHHHcCCHH
Q psy17412 169 LLHLQLYDPVLPDCDKALRLDED------------------------------------NM--KAHLYKARAMHNLGQRE 210 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~~~~~------------------------------------~~--~~~~~la~~~~~~g~~~ 210 (240)
+...|++++|.+.++++++..|+ ++ .....+|.++...|+++
T Consensus 273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 88888888888888887776544 34 44556677777777777
Q ss_pred HHHHHHH--HHHHhCCCcHHHHHHHHHhhh
Q psy17412 211 EAKEYIR--ELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 211 ~A~~~~~--~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+|.++|+ .+++..|++.. ...++.++.
T Consensus 353 ~A~~~le~a~a~~~~p~~~~-~~~La~ll~ 381 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDAND-LAMAADAFD 381 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence 7777777 46666666554 336666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=105.85 Aligned_cols=165 Identities=15% Similarity=0.073 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 61 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++..|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344777777788889999999 999999999999999999999999989999888888999999999999999999999
Q ss_pred HHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 141 VEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
..+.|++... |..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+.
T Consensus 127 ~~l~p~d~~~-----------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 127 ARLAPTDWEA-----------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hccCCCChhh-----------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHhh
Q psy17412 221 EKYPTRRKLVENYTQAF 237 (240)
Q Consensus 221 ~~~p~~~~~~~~l~~~~ 237 (240)
...+.+..+..+++.+.
T Consensus 196 l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 196 LSPAADSRVRQNLALVV 212 (257)
T ss_pred hCCCCchHHHHHHHHHH
Confidence 88888999999888765
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=112.46 Aligned_cols=192 Identities=12% Similarity=0.061 Sum_probs=162.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+.-|+--|...+..+++..|+.+-+++|+.+|.+..++...|......|+.++|+-.|+.+..+.|...++|..+..+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45666777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHH-------------------------HHHhccCchHHHHHHHHHHHHhcccCch
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKL-------------------------AIEQVRDSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A 178 (240)
|...|++.+|...-+.+++..|.+... .+...|....+-..++..+...|.++.+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 888888888888887777777666544 2333444556688899999999999999
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+..+++.+...|+ ...+..+|.++...+.+.+|..+|..+++++|.+......+.++
T Consensus 458 i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 458 IKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 9999999998887 56789999999999999999999999999999999888887665
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-16 Score=122.51 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=151.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc---
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--- 109 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 109 (240)
..|....+...+|..|..+|+|++|+..++.++.. .|.-......+|.+|..++++++|+..|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46777888888999999999999999999999998 4444556667999999999999999999999965
Q ss_pred -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 110 -----DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 110 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
+|....++.+||.+|...|++++|..++++++++..... ....+.-+..+.+++.++...+++++|..++.+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~---~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL---GASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh---ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 355667899999999999999999999999998754410 111122256689999999999999999999999
Q ss_pred HhhcC--------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 185 ALRLD--------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 185 ~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
++++. +.-+..+.++|.+|..+|++++|.+.+++++.+.
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 98763 2346788999999999999999999999999765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-14 Score=104.44 Aligned_cols=197 Identities=11% Similarity=0.085 Sum_probs=162.6
Q ss_pred hhhHHHHHHHHHHHhhHHH-HHHhch-----hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy17412 19 FLMNDFMRSVEIDAMRRFE-ERKARQ-----DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH 92 (240)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 92 (240)
.+...|.+..+.+..-+.. .....| ....+++.+|.-|+..|-++.|...|...++...-...+...+..+|..
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 3344555555555443333 222333 4567889999999999999999999999888766667888899999999
Q ss_pred ccCcCchHHHHHHHHhcCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHH
Q psy17412 93 LQLYDPVLPDCDKALRLDEDN-----MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 167 (240)
..+|++|++..++..++.+.. +..+..++..+....+.+.|+..+.++++.+|++..+ -..+|.
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-----------si~lG~ 222 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA-----------SIILGR 222 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-----------hhhhhH
Confidence 999999999999998887654 4577888888888999999999999999999998887 889999
Q ss_pred HHHHhcccCchhhHHHHHhhcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+....|+|++|++.++.+++.+|+. +.+.-.+..+|..+|+.++...++.++.+..+..
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 9999999999999999999999986 5677888899999999999999999999887654
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=119.64 Aligned_cols=169 Identities=16% Similarity=0.105 Sum_probs=156.2
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+.....++..|+..+..|++++|.+++.+++..+|.++.+|+.+|.+|.++|+.+++....-.|-.++|.+.+.|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-----hHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-----NMKAHL 197 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~ 197 (240)
...++|++.+|.-+|.++++.+|.+... .+..+.+|.+.|+...|+..+.+++...|. ......
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~-----------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWEL-----------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHH-----------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 9999999999999999999999999888 999999999999999999999999999992 123345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
..+..+...++.+.|++.++.++..
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 5678888899999999999999883
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-15 Score=114.99 Aligned_cols=171 Identities=13% Similarity=0.042 Sum_probs=145.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHH----hcCcccHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL----RLDEDNMKAH 117 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~ 117 (240)
+.+..+.....|..+...|++++|...++++++.+|++..++.. +..+...|++..+.....+++ ...|....+.
T Consensus 39 ~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (355)
T cd05804 39 RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLL 117 (355)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHH
Confidence 34556677788999999999999999999999999999877765 666666666555555555544 4567777788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh----H
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----M 193 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~ 193 (240)
..+|.++..+|++++|...+++++++.|++... +..+|.++...|++++|+.++.+++...|.. .
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~-----------~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWA-----------VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH-----------HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence 889999999999999999999999999998777 9999999999999999999999999987643 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..+..+|.++...|++++|+..+++++...|
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3567899999999999999999999986666
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-14 Score=112.83 Aligned_cols=172 Identities=15% Similarity=0.158 Sum_probs=149.3
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--------------------
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL-------------------- 109 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------------- 109 (240)
...+..+...|++++|+..+++..+.+|+++.++..++.+|...|++++|++.+.+..+.
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999999666555422
Q ss_pred ----------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------
Q psy17412 110 ----------------------DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------- 150 (240)
Q Consensus 110 ----------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------- 150 (240)
.|+++.+...++..+...|+.++|...++++++..|+ +..
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhhccCCChHHHHH
Confidence 1335567777899999999999999999999996554 332
Q ss_pred ----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 151 ----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 151 ----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.....|+++..+..+|.++...+++++|.++|+++++..|++.. +..++.++..+|+.++|..+|++++.+.
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56667899999999999999999999999999999999998654 6789999999999999999999998754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=123.56 Aligned_cols=145 Identities=12% Similarity=0.047 Sum_probs=136.6
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...+..+++++.+|.+..+.|.+++|...++.+++..|++..++..++.+..+.+++++|+..+++++..+|+++.+++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+|.++..+|++++|+..|++++..+|+++.. +..+|.++...|+.++|...|.++++...+-...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~-----------~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENG-----------YVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999999999999999988888777 9999999999999999999999999886554443
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-14 Score=111.06 Aligned_cols=194 Identities=18% Similarity=0.165 Sum_probs=154.2
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC---
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--- 110 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 110 (240)
.+.-......+|..|...+++.+|+.+|++++.+ +|..+.++.++|..|...|++++|..++++++++.
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 3444555556999999999999999999999987 34446789999999999999999999999998764
Q ss_pred -----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 111 -----EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 111 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
|.-...+..++.++..++++++|..++++++++.-+-+.. ..+..+.++.++|.+|...|+|++|.+.++++
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~---~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE---DNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3345578889999999999999999999999864321110 11123677999999999999999999999999
Q ss_pred hhcC--------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCc---HHHHHHHHHhhh
Q psy17412 186 LRLD--------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEK----YPTR---RKLVENYTQAFE 238 (240)
Q Consensus 186 l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~ 238 (240)
+.+. +.....+..+|..+.+++++.+|...|.++..+ .|++ ...+.+|+.+|.
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 9764 234567889999999999999999999888754 3444 445666666554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=99.91 Aligned_cols=105 Identities=8% Similarity=-0.046 Sum_probs=101.0
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
++..+.++..|..++..|++++|...|+-+...+|.+...|+++|.|+..+|++.+|+..|.+++.++|+++..+++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 66888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
|++..|+.+.|.+.|+.++......
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999987443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=97.87 Aligned_cols=106 Identities=10% Similarity=-0.004 Sum_probs=76.0
Q ss_pred HhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 107 LRLD-EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 107 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
..+. ++..+..+.+|..++..|++++|...|+-+..++|.+... |+++|.++..+|+|.+|+..|.++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y-----------~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY-----------WFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-----------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444 5566667777777777777777777777777777776666 777777777777777777777777
Q ss_pred hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 186 LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 186 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+.++|+++.++++.|.+++..|+.+.|.+.|+.++...
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777654
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-14 Score=111.13 Aligned_cols=136 Identities=23% Similarity=0.134 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
.|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|...|..++.++|+++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s----------- 720 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS----------- 720 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH-----------
Confidence 344566677777777777777778877788888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHhcccCchhh--HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 162 YTNRALTLLHLQLYDPVLP--DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~--~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
...+|.++.+.|+-.-|.. .+..+++++|.++++|+.+|.++..+|+.++|.++|..++++.+.+|-
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8888888888888777777 888888888888888888888888888888888888888888877763
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=112.04 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=117.4
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|.....|...+..+...|+...|..++.++++.+|++..+|.....+.....+++.|...|.++....| ...+|+
T Consensus 577 v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~m 655 (913)
T KOG0495|consen 577 VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWM 655 (913)
T ss_pred HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhH
Confidence 3445666666777777778888888888888888888888777776666666666666666666666655443 235556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 198 (240)
.-+.+...+++.++|+..++++++..|..... |..+|+++.+.++.+.|...|...++..|+.+..|..
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~fp~f~Kl-----------~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKSFPDFHKL-----------WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH-----------HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 56666666666666666666666666665555 6666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
++.+-.+.|+.-.|...+.++.-.+|.+...|...
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 66666555566666666666655566555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.7e-14 Score=109.05 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=145.1
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc-----------------
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL----------------- 109 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------- 109 (240)
......+..+...|++++|...++...+..|+++.++..++.++...|++++|.+.+.+..+.
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEI 233 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344556888888888888888888888888888888888888888888888777766655532
Q ss_pred ---------------------Cc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH----H----------
Q psy17412 110 ---------------------DE----DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK----L---------- 150 (240)
Q Consensus 110 ---------------------~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~---------- 150 (240)
.| +++..+..+|..+...|++++|...++++++..|++.. .
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 23 35567778888999999999999999999999998873 2
Q ss_pred -----------HHHhccCch--HHHHHHHHHHHHhcccCchhhHHH--HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 151 -----------AIEQVRDSP--VLYTNRALTLLHLQLYDPVLPDCD--KALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215 (240)
Q Consensus 151 -----------~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~--~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 215 (240)
+....|+++ .+...+|.++++.|++++|.++|+ .+++..|+... +..+|.++..+|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 456678888 889999999999999999999999 68888898766 55999999999999999999
Q ss_pred HHHHHHh
Q psy17412 216 IRELVEK 222 (240)
Q Consensus 216 ~~~~~~~ 222 (240)
|++++..
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=120.46 Aligned_cols=184 Identities=11% Similarity=0.008 Sum_probs=154.3
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-------
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------- 113 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 113 (240)
-.|....++..+...+...+++++|+...+.+++.+|+...+++.+|.++.+.+++.++.-. .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 46788999999999999999999999999999999999999999999999999888776655 555444443
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 114 ------------MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 114 ------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
..+++.+|.||-++|+.++|...|+++++.+|+++.+ ..++|..|... +.++|+++
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~a-----------LNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEI-----------VKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHH-----------HHHHHHHHHHh-hHHHHHHH
Confidence 3799999999999999999999999999999999888 88888888777 78888887
Q ss_pred HHHHhhc--------------------ChhhHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 182 CDKALRL--------------------DEDNMKA--------------------HLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 182 ~~~~l~~--------------------~~~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
+.+++.. +|.+.+. +.-+-..|...+++++++.+++.+++
T Consensus 172 ~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 172 LKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 7777654 2333222 22233677888999999999999999
Q ss_pred hCCCcHHHHHHHHHhhh
Q psy17412 222 KYPTRRKLVENYTQAFE 238 (240)
Q Consensus 222 ~~p~~~~~~~~l~~~~~ 238 (240)
.+|.+..++..++.++.
T Consensus 252 ~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 252 HDNKNNKAREELIRFYK 268 (906)
T ss_pred cCCcchhhHHHHHHHHH
Confidence 99999999999998875
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-14 Score=102.54 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=146.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHH---HHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVL---YTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAH 117 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~ 117 (240)
..+..++..|...+..|+|++|++.|++++...|..+.+ .+.+|.+|++.+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467778999999999999999999999999999988654 4899999999999999999999999999876 4578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHcCCCchHHH-----HHh-ccCchHHHHHHHHHHHHhc
Q psy17412 118 LYKARAMHSLG---------------Q---REEAKEYVRQLVEKYPTRRKLA-----IEQ-VRDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 118 ~~la~~~~~~~---------------~---~~~A~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~~~~la~~~~~~~ 173 (240)
+.+|.++...+ + ..+|+..+++.++..|++.... +.. ....+.--+.+|..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998865543 1 2468899999999999876541 111 1122344567888999999
Q ss_pred ccCchhhHHHHHhhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 174 LYDPVLPDCDKALRLDEDN---MKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 174 ~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
.|..|+.-++.+++..|+. .+++..++..|..+|..++|..+....
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999998864 778999999999999999998876643
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=101.83 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=133.6
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAH 117 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~ 117 (240)
..+..++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+++..|+++.|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 357789999999999999999999999999998876 5688999999999999999999999999999876 4588
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCchHHH-----H-HhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 118 LYKARAMHSLG-----------QREEAKEYVRQLVEKYPTRRKLA-----I-EQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 118 ~~la~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+.+|.+++.+. ...+|+..|+..++..|++.... + ........--+.+|..|.+.|.|..|+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99999876653 34589999999999999986551 1 1111233446678889999999999999
Q ss_pred HHHHHhhcChhh---HHHHHHHHHHHHHcCCHHHHH
Q psy17412 181 DCDKALRLDEDN---MKAHLYKARAMHNLGQREEAK 213 (240)
Q Consensus 181 ~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~ 213 (240)
.++.+++..|+. ..++..++..+..+|..+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999998875 567889999999999988554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-13 Score=103.31 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=130.1
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+.....++..+..++..|++++|...++..+...|+++..+...+.+++..++.++|.+.+++++.++|+.+..++++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56778888888899999999999999999999999999888889999999999999999999999999988888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
++.+.|++.+|+..++..+..+|+++.. |..+|..|..+|+..++ ....+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~-----------w~~LAqay~~~g~~~~a-----------------~~A~AE~ 434 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNG-----------WDLLAQAYAELGNRAEA-----------------LLARAEG 434 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchH-----------HHHHHHHHHHhCchHHH-----------------HHHHHHH
Confidence 9999999999999999998888888877 88899888888876443 4455666
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q psy17412 203 MHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+...|++++|+..+..+.+..
T Consensus 435 ~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 435 YALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHhCCCHHHHHHHHHHHHHhc
Confidence 777788888888888777665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-15 Score=112.74 Aligned_cols=113 Identities=22% Similarity=0.273 Sum_probs=106.6
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
+...|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 172 (240)
++++|+..|+++++++|++... ...++.|..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~-----------~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRF-----------TKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHH
Confidence 9999999999999999999887 77777775555
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=110.16 Aligned_cols=142 Identities=25% Similarity=0.346 Sum_probs=124.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
....+|..+......|+.+++.|+|..|+..|.+++..+|+++..|.++|.||.++|.+..|+...+++++++|+....|
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 44456777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
...|.++..+.+|++|+..|+++++.+|++... ...+..|...........+..++++ .+|+
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~-----------~~~~~rc~~a~~~~~~~ee~~~r~~-~dpe 491 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEA-----------IDGYRRCVEAQRGDETPEETKRRAM-ADPE 491 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH-----------HHHHHHHHHHhhcCCCHHHHHHhhc-cCHH
Confidence 999999999999999999999999999998877 7777777776544455555555533 3554
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-14 Score=99.30 Aligned_cols=153 Identities=16% Similarity=0.075 Sum_probs=138.1
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.-|...+.....|..+-..|++++|+++|+..++.+|.+..++-....+...+|+..+|++.+...++..+.+.++|..+
T Consensus 81 ~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL 160 (289)
T KOG3060|consen 81 RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL 160 (289)
T ss_pred hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34777888888999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc---ccCchhhHHHHHhhcChhhHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
+.+|...|+|++|..++++.+-+.|.++.. +..+|.+++-.| ++.-|.++|.++++++|.+...++
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~~P~n~l~-----------f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLIQPFNPLY-----------FQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHcCCCcHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 999999999999999999999999999887 788888777665 567799999999999998888887
Q ss_pred HHHHHHH
Q psy17412 198 YKARAMH 204 (240)
Q Consensus 198 ~la~~~~ 204 (240)
.+..+..
T Consensus 230 GI~lc~~ 236 (289)
T KOG3060|consen 230 GIYLCGS 236 (289)
T ss_pred HHHHHHH
Confidence 7665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-14 Score=110.43 Aligned_cols=177 Identities=17% Similarity=0.102 Sum_probs=146.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
+|+.+..+..+|..+...|+.+.+...+.++....|.+ .......+.++...|++++|...+++++...|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56778899999999999999999999999988887754 456777899999999999999999999999999987776
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEK-YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
. +..+...|++..+.....+++.. .|.+ +........+|.++...|++++|...++++++..|+++.++.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~ 152 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPEN--------PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH 152 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHH
Confidence 5 66666666555555555555432 1221 222344788899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
.+|.++...|++++|+.++++++...|.++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 999999999999999999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=109.89 Aligned_cols=189 Identities=22% Similarity=0.162 Sum_probs=138.4
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
.+.+.....++...|++++|++++........+...+.-.+|.++.++|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 44555666677777777777777777766666767777777777777777777777777777777777777766666653
Q ss_pred HcC-----CHHHHHHHHHHHHHcCCCchHH--------------------------------------------------
Q psy17412 126 SLG-----QREEAKEYVRQLVEKYPTRRKL-------------------------------------------------- 150 (240)
Q Consensus 126 ~~~-----~~~~A~~~~~~a~~~~~~~~~~-------------------------------------------------- 150 (240)
... +.+.-...|++.....|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 222 3455556666665555543221
Q ss_pred -----HHH---------------hccCc--hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCC
Q psy17412 151 -----AIE---------------QVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 151 -----~~~---------------~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 208 (240)
... ..+.. ..+++.+|..|-..|++++|+++++++++..|+.++.+...|+++-..|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 000 00111 24668889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 209 REEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 209 ~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.+|..+++.+..+++.+.-+-...+
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 99999999999999998765544433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-15 Score=109.53 Aligned_cols=194 Identities=21% Similarity=0.228 Sum_probs=148.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH---------
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM--------- 114 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--------- 114 (240)
..++.....|..+++..+|..|+..|..|++..|+++..|.+.+.+++..+++++|....++.+++.|..+
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 35566777888888888888888888888888888888888888888888888877777766665544332
Q ss_pred -----------------------------------------------------------------------------HHH
Q psy17412 115 -----------------------------------------------------------------------------KAH 117 (240)
Q Consensus 115 -----------------------------------------------------------------------------~~~ 117 (240)
.+.
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH-HHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh----
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA-IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---- 192 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---- 192 (240)
+..|.+++..++.+.|+.+|+++++++|++.... ....+..-..+-..|.-.++.|+|..|.+.|..++.++|++
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 4445555556666666677777777777655441 11122334567788999999999999999999999999975
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+..|.+++.+...+|+..+|+..++.++.++|....++..-++|.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 667899999999999999999999999999998877776666653
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.7e-14 Score=110.85 Aligned_cols=201 Identities=18% Similarity=0.067 Sum_probs=162.1
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
...++.++.+.+.++..|..+++.+.|.++.+++++.+ .+++.+|..++.+....+++.+|+...+.++.-.|+|-...
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 44578888999999999999999999999999999994 45688999999999999999999999999998888765544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------------------------------
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------------------------------------- 150 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------------------------------- 150 (240)
.....+-...++.++|+......+.+....+.+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 444444445555555555544444332210000
Q ss_pred ---------------------------------------------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 151 ---------------------------------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 151 ---------------------------------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+....+..+..|+..|.++...|+.++|.+.|..+
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 11222345566899999999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 186 LRLDEDNMKAHLYKARAMHNLGQREEAKE--YIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 186 l~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+.++|+++.....+|.++...|+..-|.. .+..+++.+|.++++|+.++.++.+
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988888 9999999999999999999998865
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=110.87 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=86.0
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
+...|...+..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..+++++.++|.+... +
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a-----------~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA-----------Y 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH-----------H
Confidence 34567777777778888888888887777777777778888877888888888888887777777666 7
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHc
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL 206 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 206 (240)
+.+|.++..+|++++|+..|+++++++|++..+...++.+...+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777778888888888888777777777777776665444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-13 Score=103.48 Aligned_cols=149 Identities=19% Similarity=0.078 Sum_probs=139.7
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
|....+++..+..++..|++++|+..++..+...|+++..+-..+.++...++..+|.+.+++++.+.|..+..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l------ 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL------ 376 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH------
Confidence 67788999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..++|.++++.|++.+|+..++..+..+|+++..|..++..|..+|+..+|...+.+.......-.++...+.+.
T Consensus 377 -----~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 377 -----QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred -----HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887766666655544
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-13 Score=105.78 Aligned_cols=188 Identities=20% Similarity=0.179 Sum_probs=161.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|.+++.+-..|..+...|+-++|..+...++..++.+..+|..+|.++....+|++|+.+|+.|+.+.|+|...+.
T Consensus 34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC---hh----
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD---ED---- 191 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~---- 191 (240)
.++.+..++++++-....-.+.++..|..... |...+..+.-.|++..|...++...+.. |.
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~-----------w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS-----------WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 99999999999999999999999999988777 7777777777777777776665544322 11
Q ss_pred -----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 192 -----------------------------------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 192 -----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
........+.+++++|+.++|...|...+..+|++-..+..+-.+
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHH
Confidence 122334678889999999999999999999999998888777666
Q ss_pred h
Q psy17412 237 F 237 (240)
Q Consensus 237 ~ 237 (240)
+
T Consensus 263 l 263 (700)
T KOG1156|consen 263 L 263 (700)
T ss_pred H
Confidence 5
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=112.80 Aligned_cols=189 Identities=14% Similarity=0.066 Sum_probs=148.6
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc--
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-- 113 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 113 (240)
.+....++.-+.++..+|..|....+...|..+|++|.++++.+..++-..+..|....+++.|....-.+-+..|..
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 345556667777777777777777777777777777777777777777777777777777777777755555555432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
...|..+|..+...+++..|+..++.+++.+|.+... |..+|.+|...|+|..|++.|.++..++|.+.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~-----------W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNL-----------WLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHH-----------HHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 2345668888888888888888888888888888777 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
...+..+.+...+|+|.+|+..+...+............++.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999888776555444444443
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-13 Score=99.28 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=135.8
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHH--------------------------------
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTN-------------------------------- 85 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------------------------------- 85 (240)
....-+.+...+..+|.+++..|++++|+..|+++...+|......-.
T Consensus 224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 344567788899999999999999999999999999998875443333
Q ss_pred --HHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHH
Q psy17412 86 --RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163 (240)
Q Consensus 86 --la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (240)
-+...+..+++..|+.+-.++|+.+|.+..++...|.++..+|+.++|+-.|+.+..+.|-.-+. |.
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~-----------Y~ 372 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI-----------YR 372 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH-----------HH
Confidence 33344445566677777777777777777777777777777777777777777777777766555 77
Q ss_pred HHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA-RAMH-NLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 164 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+..+|...|++.+|......+++.-|.+...+..+| .++. .----++|.+++++++++.|....+...++.+..
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 7777777777777777777777777777777776665 3333 2333466777777777777777776666666543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=89.67 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh-
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN- 192 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~- 192 (240)
++.++.+|..+...|++++|+..+++++..+|+++.. +..++.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA--------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc--------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 3567888888888888888888888888888765322 3347888888888888888888888888887764
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 193 --MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 193 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.++..+|.++..+|++++|..++++++...|+++.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 567888888888888999999999888888888876655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-13 Score=104.64 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=158.9
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
.-..++..+.-.+..++|.+.++..+..++..|++++.....|.....+|+-++|......++..++.+.-+|.-+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34567778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
...++|++|+++|+.|+.+.|++... +..++....++++++-....-.+.++..|..-..|...+..+.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-----------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-----------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQH 154 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999888 9999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q psy17412 205 NLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~ 223 (240)
..|++..|....+...+..
T Consensus 155 L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999988877654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-12 Score=107.14 Aligned_cols=176 Identities=11% Similarity=0.016 Sum_probs=156.4
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-------
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVR------DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------- 111 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------- 111 (240)
-.-+....|..|+..++.++|+.+|++++...| .+......+...|...+++++|..++++.....|
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 445667789999999999999999999988653 2233346788899999999999999999987433
Q ss_pred --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 112 --------DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 112 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
+..++...++.++...|++.+|...+++.+...|.+... +..+|.++...|.+.+|...++
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l-----------~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNL-----------RIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHH
Confidence 445678889999999999999999999999999999888 9999999999999999999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
.+..++|++..+...+|.++..+|++.+|......++...|+++....
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 999999999999999999999999999999999999999999986543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-13 Score=93.37 Aligned_cols=149 Identities=18% Similarity=0.195 Sum_probs=120.2
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 155 (240)
++..++..|...+..|++.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-----
Confidence 46788899999999999999999999999988764 6789999999999999999999999999999998876
Q ss_pred cCchHHHHHHHHHHHHhc-----------ccCchhhHHHHHhhcChhhHH-----------------HHHHHHHHHHHcC
Q psy17412 156 RDSPVLYTNRALTLLHLQ-----------LYDPVLPDCDKALRLDEDNMK-----------------AHLYKARAMHNLG 207 (240)
Q Consensus 156 ~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~l~~~~~~~~-----------------~~~~la~~~~~~g 207 (240)
+.+++.+|.+++... ...+|+..|+..++..|++.. --+.+|..|.+.|
T Consensus 79 ---~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 79 ---DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ---hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 677888888876653 345789999999999997521 2256889999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 208 QREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.+..|+..++.+++..|+.+..-..+..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 9999999999999999998765544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=87.49 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=96.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLY 119 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 119 (240)
++.++..|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..+++++...|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999876 5688999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+|.++..+|++++|...++++++..|++...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.9e-14 Score=110.00 Aligned_cols=120 Identities=12% Similarity=0.125 Sum_probs=73.8
Q ss_pred HccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH
Q psy17412 92 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 171 (240)
..++|.++..+++..++++|-....|+.+|.+..+.++++.|..+|..++.+.|++... |.+++..|.+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea-----------WnNls~ayi~ 565 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA-----------WNNLSTAYIR 565 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh-----------hhhhhHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666555 6666666666
Q ss_pred hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 172 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.++-.+|...++++++.+-.+..+|-+...+..+.|.+++|++.|.+.+.+
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 666666666666666666555566666666666666666666666655543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=90.30 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=95.4
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
..+..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 455678899999999999999999999999999887664 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCc
Q psy17412 118 LYKARAMHSLGQ--------------REEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 118 ~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~ 147 (240)
..+|.++...|+ +.+|+..+++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999887 567777777777777775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=100.84 Aligned_cols=171 Identities=22% Similarity=0.244 Sum_probs=141.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
+.-.....|.++...|++++|++.+.+. ++.++......+++..++++.|.+.++.+.+.+.+..-.....+++.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3445566778888899999999998764 56778888899999999999999999999998888777777777777
Q ss_pred HHcC--CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 125 HSLG--QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 125 ~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
+..| ++.+|...|++.....+.++.. +..++.+++.+|+|++|.+.+.++++.+|++++++.+++.+
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~-----------lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKL-----------LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHH-----------HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 7766 5999999999988877776666 99999999999999999999999999999999999999999
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCcHHHHH
Q psy17412 203 MHNLGQR-EEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 203 ~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
...+|+. +.+.+++.+....+|+++-+..
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 9999999 6677788888889999876543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-13 Score=95.24 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=109.7
Q ss_pred hHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc---cc
Q psy17412 99 VLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ---LY 175 (240)
Q Consensus 99 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~ 175 (240)
-+.-++.-+..+|++++-|..||.+|+.+|++..|...|.+++++.|++++. +..+|.+++... ..
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~-----------~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI-----------LLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHhcCCccc
Confidence 3445666678899999999999999999999999999999999999999888 999999887653 34
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
.++...+++++..+|+++.+.+.+|..++..|++.+|...++..+...|.+..-...+.
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 57889999999999999999999999999999999999999999999887755444333
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=98.00 Aligned_cols=136 Identities=21% Similarity=0.323 Sum_probs=116.3
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHHccCcCchHHHHHHHHh
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---------------PVLYTNRALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
..+......|+.+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|..|+..+.+++.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 355667778999999999999999999998864321 34889999999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCch-hhHHHHHhh
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV-LPDCDKALR 187 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~l~ 187 (240)
.+|+|+.+++..|.++..+|+++.|+..|++++++.|++..+ ...+..+..+..++.+. .+.|.+++.
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~-----------~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA-----------RAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999877 77777777766655444 667777765
Q ss_pred cCh
Q psy17412 188 LDE 190 (240)
Q Consensus 188 ~~~ 190 (240)
.-+
T Consensus 355 k~~ 357 (397)
T KOG0543|consen 355 KLA 357 (397)
T ss_pred ccc
Confidence 543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-12 Score=91.47 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=123.7
Q ss_pred CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
.++..++..|...+..|++++|++.|++++...|..+. +.+.+|.++++.+++++|+..+++.++.+|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 35677888999999999999999999999999998765 45899999999999999999999999999999877
Q ss_pred ccCchHHHHHHHHHHHHhc------------------ccCchhhHHHHHhhcChhhHH-----------------HHHHH
Q psy17412 155 VRDSPVLYTNRALTLLHLQ------------------LYDPVLPDCDKALRLDEDNMK-----------------AHLYK 199 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~------------------~~~~A~~~~~~~l~~~~~~~~-----------------~~~~l 199 (240)
+.+++.+|.++...+ ...+|+..|++.++..|+... --+..
T Consensus 106 ----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 106 ----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred ----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899998865443 124688999999999997521 12567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
|..|.+.|.+..|+.-++.+++..|+.+..-..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ea 214 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDA 214 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHH
Confidence 888999999999999999999999987554433
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-11 Score=94.16 Aligned_cols=186 Identities=20% Similarity=0.202 Sum_probs=146.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|+...++...-.+....+.|++|+...+.-...... ....+..+.|+++++..++|+..++ ..++.+.....
T Consensus 39 l~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~ 114 (652)
T KOG2376|consen 39 LSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE 114 (652)
T ss_pred HhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence 3456888899999999999999999999555443322211 2233789999999999999999998 44566667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----------------HHHhcc----CchHHHHHHHHHHHHhcccCch
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------AIEQVR----DSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------~~~~~~----~~~~~~~~la~~~~~~~~~~~A 178 (240)
..|++++++|+|++|...|+..++-+.++.+. .....| ++.+.++|.+.++...|+|.+|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 89999999999999999999998877665443 112222 2567899999999999999999
Q ss_pred hhHHHHHhhcCh--------h-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 179 LPDCDKALRLDE--------D-------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 179 ~~~~~~~l~~~~--------~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
++.++++++... + -..+...++.++..+|+..+|...|...++.+|.+..
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 999999954321 1 1346788999999999999999999999999987754
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-13 Score=105.25 Aligned_cols=175 Identities=17% Similarity=0.110 Sum_probs=151.2
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
....|-....+|...|+-.+|..+..+-++ .|.++..|..+|++....--|++|.+..+. .+..+...+|...
T Consensus 423 rlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~------~sarA~r~~~~~~ 495 (777)
T KOG1128|consen 423 RLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------ISARAQRSLALLI 495 (777)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhh------hhHHHHHhhcccc
Confidence 567788888999999999999999999988 666777887777776665555555555443 3455778888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
...++|+++..+++..++++|-.... |+.+|.+..+.+++..|.+.|.+++.++|++...|.+++..|+
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~-----------wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGT-----------WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhH-----------HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 88999999999999999999998888 9999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 205 NLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+|+..+|...++++++-+-+++.+|.++..+.
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs 597 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS 597 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh
Confidence 999999999999999999988888888876543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=81.50 Aligned_cols=99 Identities=36% Similarity=0.436 Sum_probs=94.1
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 127 (240)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q psy17412 128 GQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~ 146 (240)
|++++|...+.++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=79.41 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG-QREEAKEYIRELVEKYP 224 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p 224 (240)
++..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35669999999999999999999999999999999999999999999999 79999999999999988
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-12 Score=87.24 Aligned_cols=105 Identities=17% Similarity=0.037 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
..+++.+|.++..+|++++|+..+++++.+.|+.... +.++.++|.++...|++++|+..+++++..+|...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~--------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR--------SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 3445556666666666666666666666555442211 22356666666666666666666666666666555
Q ss_pred HHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCc
Q psy17412 194 KAHLYKARAMH-------NLGQRE-------EAKEYIRELVEKYPTR 226 (240)
Q Consensus 194 ~~~~~la~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~ 226 (240)
..+..+|.++. .+|+++ +|+.++++++..+|.+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 55555555555 555554 6666777777788754
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=85.22 Aligned_cols=182 Identities=17% Similarity=0.135 Sum_probs=141.5
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.+...+..++..|..|-+.|-+.-|..-|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++++|.+.-+..+.
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc----cCch-HHHHHHHH--------------HHHHhcccCchhhH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV----RDSP-VLYTNRAL--------------TLLHLQLYDPVLPD 181 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~----~~~~-~~~~~la~--------------~~~~~~~~~~A~~~ 181 (240)
|..++.-|++.-|.+.+.+-...+|++|--.+..+ .-+| .+..++.. +-+-+|+..+ ...
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l 218 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETL 218 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHH
Confidence 99999999999999999999999999886521111 0011 11111111 1122233211 122
Q ss_pred HHHHhhcChh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 182 CDKALRLDED-------NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 182 ~~~~l~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
++++.....+ -.++++.+|..+...|+.++|...|+-++..+
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3333322222 25678999999999999999999999888654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-12 Score=105.66 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=141.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-------------------HHHHHHHHHHHHccCcCc
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-------------------VLYTNRALTLLHLQLYDP 98 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~~~~~la~~~~~~~~~~~ 98 (240)
.....|.....++.+|..+++.++++++... .++...+.+. .+++.+|.||-++|++++
T Consensus 57 ~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 57 HLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 5567899999999999999999888777666 6666555544 899999999999999999
Q ss_pred hHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH------H---HHhc--------------
Q psy17412 99 VLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL------A---IEQV-------------- 155 (240)
Q Consensus 99 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------~---~~~~-------------- 155 (240)
|...++++++.+|+++.+..++|..+... +.++|+.++.+++...-+.... + +...
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki 213 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999998753221111 0 1111
Q ss_pred ------cCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 156 ------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 156 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
......+.-+-.+|...++|++++.+++.+++.+|++..+...++.+|. +.|.. ...++..+++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 1223445555578888999999999999999999999999999999987 44433 4445544443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-13 Score=78.87 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG-QREEAKEYVRQLVEKYP 145 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~ 145 (240)
+..|..+|.+++..|++++|+..|.++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445555555555555555555555555555555555555555555555 45555555555555544
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=80.75 Aligned_cols=98 Identities=36% Similarity=0.396 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+++.+|.++...|++++|+..++++++..|.+... +..+|.++...+++++|+..+++++...|.+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA-----------YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 35667777777777777777777777777766555 7777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
+..+|.++...|++++|..++.+++...|
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 77777777777777777777777776655
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=82.08 Aligned_cols=81 Identities=28% Similarity=0.384 Sum_probs=73.0
Q ss_pred hCCHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRD--SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 136 (240)
+|+|+.|+.+++++++..|. +...++.+|.|+++.|++++|+..+++ ...+|.++...+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q psy17412 137 VRQL 140 (240)
Q Consensus 137 ~~~a 140 (240)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-12 Score=87.00 Aligned_cols=105 Identities=24% Similarity=0.185 Sum_probs=90.0
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...+..++.+|..+...|++++|+..|++++...|+. +.++.++|.++...|++++|+..+++++.+.|.....+..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3468889999999999999999999999999987663 4589999999999999999999999999999999998888
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHHcCCCc
Q psy17412 120 KARAMH-------SLGQRE-------EAKEYVRQLVEKYPTR 147 (240)
Q Consensus 120 la~~~~-------~~~~~~-------~A~~~~~~a~~~~~~~ 147 (240)
+|.++. .+|+++ +|+..+++++...|.+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 888888 777877 5555555666667654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-12 Score=88.21 Aligned_cols=119 Identities=21% Similarity=0.226 Sum_probs=83.9
Q ss_pred CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---- 108 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA---- 108 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH----
Confidence 345567777777777777777777777777665542 4567777777777777777777777777777776665
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+..+|.++...|+...+...+..++. .+++|..++++++..+|++.
T Consensus 109 -------~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 109 -------LNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred -------HHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 77777777777776555544444332 26778888888888888763
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=104.78 Aligned_cols=167 Identities=16% Similarity=0.044 Sum_probs=148.8
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVR 138 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 138 (240)
.++...|...|-+++.+++..+.+|..+|.+|+...+...|..+|+++.++++.+..+.-..+..+....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
.+-+..|..... ..|..+|..|.+.++...|+..|+.+++.+|.+...|..+|.+|...|++.-|++.|.+
T Consensus 551 ~~~qka~a~~~k---------~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 551 RAAQKAPAFACK---------ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHhhhchHHHHH---------hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 555555542221 22666899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHH
Q psy17412 219 LVEKYPTRRKLVENYT 234 (240)
Q Consensus 219 ~~~~~p~~~~~~~~l~ 234 (240)
+..++|.+.-..+..+
T Consensus 622 As~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 622 ASLLRPLSKYGRFKEA 637 (1238)
T ss_pred hHhcCcHhHHHHHHHH
Confidence 9999999876655544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-10 Score=86.06 Aligned_cols=184 Identities=17% Similarity=0.107 Sum_probs=100.5
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.+...-.+..-+...-..|+++.+-.++.++-+..+++ ..+...++.+....|++..|.....++++..|.++.+....
T Consensus 114 ~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 114 GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 33344444555555556666666666666666553322 34455566666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------HHHh----ccCchHHHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------AIEQ----VRDSPVLYTNRALTL 169 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------~~~~----~~~~~~~~~~la~~~ 169 (240)
..+|...|+|.+....+.+.-+..--+... ..+. ...++.+...++.-+
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 666666666666665555444322111100 0111 112344455555555
Q ss_pred HHhcccCchhhHHHHHhhc-------------------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 170 LHLQLYDPVLPDCDKALRL-------------------------------DEDNMKAHLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~-------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
..+|+.++|.+..+.+++. .|+++..+..+|..+.+.+.+.+|..+|+.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555555544432 255566666666666666666666666666
Q ss_pred HHHhCCC
Q psy17412 219 LVEKYPT 225 (240)
Q Consensus 219 ~~~~~p~ 225 (240)
++...|+
T Consensus 354 Al~~~~s 360 (400)
T COG3071 354 ALKLRPS 360 (400)
T ss_pred HHhcCCC
Confidence 6655554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.5e-12 Score=99.78 Aligned_cols=137 Identities=12% Similarity=0.001 Sum_probs=85.4
Q ss_pred HHHHHHHhHhHHHHhCC---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcC--------chHHHHHHHHhc--Cc
Q psy17412 45 IADHFKANGNKAFQSGQ---YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYD--------PVLPDCDKALRL--DE 111 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~~~~~--~~ 111 (240)
.+-.++..|..++..++ ...|+.+|+++++.+|+++.++..++.+|.....+. .+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45555677777776554 778999999999999999888888888776543332 222333333332 44
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 112 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
..+.++..+|......|++++|...+++++.++|+ ... |..+|.++...|++++|+..+++++.++|.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a-----------~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLN-----------YVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44555555565555566666666666666666653 333 566666666666666666666666666665
Q ss_pred hH
Q psy17412 192 NM 193 (240)
Q Consensus 192 ~~ 193 (240)
++
T Consensus 486 ~p 487 (517)
T PRK10153 486 EN 487 (517)
T ss_pred Cc
Confidence 44
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.7e-12 Score=83.60 Aligned_cols=89 Identities=22% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKAR 122 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~ 122 (240)
.+.........++...+...++..+..+|++ ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+|.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333333344555555555555555555544 2334444444444455555555554444433222 223444444
Q ss_pred HHHHcCCHHHHHHHH
Q psy17412 123 AMHSLGQREEAKEYV 137 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~ 137 (240)
++...|++++|+..+
T Consensus 94 ~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 94 ILLQQGQYDEALATL 108 (145)
T ss_pred HHHHcCCHHHHHHHH
Confidence 444444444444444
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.7e-12 Score=91.86 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=104.2
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 129 (240)
..+|.+++..|+|++|...|+-+.+.+.-+...+.++|-|++.+|.|.+|.....++ |+++-....+-.+..+.++
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence 334555555555555555555555544444455555555555555555554444333 2333222222222233333
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
-++- -.|...+ .+..+-...+|.+.+..-.|.+|+..|++++.-+|+....-..++.||.++.-+
T Consensus 137 Ek~~-~~fh~~L--------------qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 137 EKRI-LTFHSSL--------------QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHH-HHHHHHH--------------hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence 2221 1122211 122233677888888888999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 210 EEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 210 ~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
+-+.+.+.-.++..|+++-+....
T Consensus 202 dvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 202 DVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred hhHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999999999999987765443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=94.48 Aligned_cols=162 Identities=17% Similarity=0.044 Sum_probs=137.3
Q ss_pred HHHHhHhHHHHhCC---HHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHc---c------CcCchHHHHHHHHhcCcc
Q psy17412 48 HFKANGNKAFQSGQ---YEAALVQYDKAI---EQVRDSPVLYTNRALTLLHL---Q------LYDPVLPDCDKALRLDED 112 (240)
Q Consensus 48 ~~~~~a~~~~~~~~---~~~A~~~~~~a~---~~~~~~~~~~~~la~~~~~~---~------~~~~A~~~~~~~~~~~~~ 112 (240)
.++..|...+..+. ...|+.+|.+++ ..+|+.+.++..++.|++.. | +..+|.+..+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44677777766654 568999999999 89999999999999999875 1 234678889999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
++.++..+|.+....++++.|...|++++.++|+.... ++..|.+..-.|+.++|++.++++++++|..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-----------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-----------YYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 99999999999999999999999999999999999888 9999999999999999999999999999987
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q psy17412 193 MKAHLYKARA-MHNLGQREEAKEYIRELV 220 (240)
Q Consensus 193 ~~~~~~la~~-~~~~g~~~~A~~~~~~~~ 220 (240)
..+-...-.+ .+.....++|+..|-+-.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 6554444344 445667788888776543
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=95.84 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
.....|..+++.|+|..|...|++++..-+..... .-........++.|++.|+.++++|.+|+..++++|..+|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 45667899999999999999999998764422111 01111112356999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|+.+++..|.++..+|+++.|+..|++++++.|+|..+...+..|-++
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888877553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=83.00 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=78.0
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
-...+.+.+|..++..|++++|+..|+.++...|+. ..+...+|.++...|++++|+..++.. .-.+-.+.++..+
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHH
Confidence 346778888899999999999999999998887655 457778899999999999999888663 3334456678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~ 141 (240)
|.++...|++++|+..|++++
T Consensus 125 Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999888764
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-13 Score=98.78 Aligned_cols=102 Identities=33% Similarity=0.471 Sum_probs=97.9
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
+-..|+.|+++|.|++|+.+|.+++..+|.++..+.+++.+|++...+..|...+..++.++..+..+|...|..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHH
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+..+|.+.++.++++.|++...
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH
Confidence 9999999999999999987655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-12 Score=83.16 Aligned_cols=97 Identities=8% Similarity=-0.177 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
-...+..|.-++..|++++|...|+-+...+|.+++.+..+|.++..+++|++|+..|..+..+.++++..
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--------- 107 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--------- 107 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc---------
Confidence 44455555555566666666666665555555555556666666666666666666666665555555554
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhh
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALR 187 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~ 187 (240)
.+..|.|++.+|+.+.|+..|..+++
T Consensus 108 --~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 --VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 55566666666666666666655555
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=90.69 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=99.9
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-
Q psy17412 114 MKAHLYKARAM-HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED- 191 (240)
Q Consensus 114 ~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~- 191 (240)
...++..|..+ ...|+|++|+..|+..++.+|++... +.+++.+|.+|+..|++++|+..|.++++.+|+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a--------~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ--------PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 46778888766 66799999999999999999998543 455999999999999999999999999988877
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 192 --NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 192 --~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
.+++++.+|.++..+|++++|...|+++++.+|++..+.....++
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 588899999999999999999999999999999987765554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-11 Score=83.48 Aligned_cols=185 Identities=21% Similarity=0.183 Sum_probs=148.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH---H
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---A 116 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 116 (240)
...+..|+..|...+..|+|++|++.|+......|.+ ..+...++.++++.+++++|+..+++-+.+.|.++. +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3467889999999999999999999999999988876 568889999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCchHH-----HHHh-ccCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 117 HLYKARAMHSL--------GQREEAKEYVRQLVEKYPTRRKL-----AIEQ-VRDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 117 ~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
++..|.+++.. .--.+|...++..+...|++.-. .+.. ....+..-..+|..|.+.|.+..|+.-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 77888876543 22356888899999999987544 0111 1122344677889999999999999999
Q ss_pred HHHhhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 183 DKALRLDEDN---MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 183 ~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9999987764 56788899999999999999876654444455554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=75.07 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999986
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-11 Score=89.91 Aligned_cols=121 Identities=18% Similarity=0.133 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG---QREEAKEYVR 138 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~ 138 (240)
.+.-+.-++..+..+|+++.-|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++.+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4566777788888899999999999999999999999999999999999999999999998877664 4567889999
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
++++.+|.+... .+.+|..++..|+|.+|...++..++..|.+.
T Consensus 218 ~al~~D~~~ira-----------l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRA-----------LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHH-----------HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999888 99999999999999999999999999887653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=79.46 Aligned_cols=84 Identities=29% Similarity=0.372 Sum_probs=72.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
.+|++++|+..++++++..|.++. ...++.+|.++++.|+|++|+..+++ .+.+|.+....+.+|.++..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~---------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPN---------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHH---------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChh---------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999996321 22378899999999999999999999 88888888999999999999
Q ss_pred cCCHHHHHHHHHHH
Q psy17412 206 LGQREEAKEYIREL 219 (240)
Q Consensus 206 ~g~~~~A~~~~~~~ 219 (240)
+|++++|+..++++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=98.51 Aligned_cols=141 Identities=15% Similarity=0.052 Sum_probs=112.0
Q ss_pred CCChHH--HHHHHHHHHHccC---cCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHc
Q psy17412 77 RDSPVL--YTNRALTLLHLQL---YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG--------QREEAKEYVRQLVEK 143 (240)
Q Consensus 77 ~~~~~~--~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~ 143 (240)
|.+..+ ++..|..+...++ ...|+.+|+++++++|+++.++..++.++.... +...+....++++.+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 444443 3456666655443 779999999999999999999999888776543 234455555555553
Q ss_pred --CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 144 --YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
.|.++.. +..+|......|++++|...+++++.++|+ ..++..+|.++...|++++|++.|++++.
T Consensus 414 ~~~~~~~~~-----------~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 414 PELNVLPRI-----------YEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ccCcCChHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444 888999999999999999999999999995 78999999999999999999999999999
Q ss_pred hCCCcHHH
Q psy17412 222 KYPTRRKL 229 (240)
Q Consensus 222 ~~p~~~~~ 229 (240)
++|.++..
T Consensus 482 L~P~~pt~ 489 (517)
T PRK10153 482 LRPGENTL 489 (517)
T ss_pred cCCCCchH
Confidence 99998753
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=81.82 Aligned_cols=109 Identities=11% Similarity=0.091 Sum_probs=101.3
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...++..+..+..|..++..|++++|...|+-....+|.++..|..+|.|+..+++|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
.|.|++.+|+.+.|..+|+.++. .|.+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 99999999999999999999998 455433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=92.80 Aligned_cols=176 Identities=16% Similarity=0.145 Sum_probs=134.7
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc------c
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------D 112 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~ 112 (240)
-++.+...|..|...|+|++|.+.|.++...... ....+...+.++.+. ++++|+.++++++.+.- .
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4667778899999999999999999999876432 145677777777666 99999999999997642 2
Q ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 113 NMKAHLYKARAMHSL-GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 113 ~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
-..++..+|.++... |++++|+.+|++++++....... ......+..+|.++.+.|+|++|++.|+++....-+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-----~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-----HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-----hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 256889999999999 99999999999999875432211 112456889999999999999999999998764321
Q ss_pred ------h-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 192 ------N-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 192 ------~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
. ...++..+.+++..|+...|...+++....+|..
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 1 2345677889999999999999999999998854
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=90.28 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=96.7
Q ss_pred HHHHHHHHHH-HHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 81 VLYTNRALTL-LHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 81 ~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
...+..|..+ +..|+|++|+..|++.+...|++ +.+++.+|.+++..|++++|+..|+++++.+|+++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~------ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA------ 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------
Confidence 5677777766 56799999999999999999987 5799999999999999999999999999999987766
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+++++.+|.++...|++++|...|+++++..|+...+.
T Consensus 217 --~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 217 --ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 77799999999999999999999999999999876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-10 Score=90.38 Aligned_cols=174 Identities=21% Similarity=0.179 Sum_probs=140.3
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC-----cCchHHHHHHHHhcC---
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL-----YDPVLPDCDKALRLD--- 110 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~--- 110 (240)
...-.+....+...|.++...|++++|...|...++.+|++...+..+..+...... .+.-...|+......
T Consensus 31 ~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s 110 (517)
T PF12569_consen 31 EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS 110 (517)
T ss_pred hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc
Confidence 445667788889999999999999999999999999999998877777776622211 111122222211100
Q ss_pred ------------------------------------------------------------------------------cc
Q psy17412 111 ------------------------------------------------------------------------------ED 112 (240)
Q Consensus 111 ------------------------------------------------------------------------------~~ 112 (240)
|.
T Consensus 111 ~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p 190 (517)
T PF12569_consen 111 DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP 190 (517)
T ss_pred cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence 01
Q ss_pred c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 113 N--MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 113 ~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
. ..+++.+|+.|...|++++|+.+++++++..|..++. +...|.++.+.|++.+|...++.+-++++
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el-----------y~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL-----------YMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 1 1356888999999999999999999999999998888 99999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.+-.+....+..+.+.|+.++|.+.+....+.+
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 998888999999999999999999988776554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=73.49 Aligned_cols=64 Identities=27% Similarity=0.340 Sum_probs=44.3
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566777777777777777777777777777777777777777777777777777777777653
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=83.91 Aligned_cols=115 Identities=27% Similarity=0.428 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
.+..-|.-++..|+|++|..-|..++.+.|..+.- ..+.+|.+.|.++++++.++.|+..+.++++++|++..+
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE------ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 34556788899999999999999999999986543 335569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+...|.+|.++..+++|+..|+++++.+|...+++...+++
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999999999999998888877765
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=87.94 Aligned_cols=166 Identities=16% Similarity=0.123 Sum_probs=128.2
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 136 (240)
.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+.-+..+++.+.+.+|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56667778888887777777777777777888888888888888888888777787777777777777777777777766
Q ss_pred HHHHHHc----------------CCCc---hHHHHHhcc--CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 137 VRQLVEK----------------YPTR---RKLAIEQVR--DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 137 ~~~a~~~----------------~~~~---~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
....... ..++ ....++..| ..++...+.|.+.++.|+++.|++-|+.+++...-++..
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 5443221 1111 011233444 456779999999999999999999999999998888889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
-++++.+++..|+++.|+++..++++.
T Consensus 181 AYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999998887754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=90.78 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
+.+....|.++...|++++|++.+.+. .+.++......++..+++++.|.+.++..-+.+++..-.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--------- 167 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--------- 167 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH---------
Confidence 445566777888889999998888765 456777888899999999999999999988887765443
Q ss_pred HHHHHHHHHHHHhc--ccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 160 VLYTNRALTLLHLQ--LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 160 ~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
....+++....| .+.+|...|+...+..+.++..+..++.+++.+|++++|...+.+++..+|.++++..++.-+
T Consensus 168 --qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 168 --QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp --HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 444455555555 699999999999888888899999999999999999999999999999999999988887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-09 Score=92.59 Aligned_cols=161 Identities=15% Similarity=0.062 Sum_probs=80.9
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHHHHHHHHHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKAHLYKARAMH 125 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~ 125 (240)
+..+...+.+.|++++|.++|+...+.+ +.+...|..+...|.+.|++++|...|++..+. .|+ ...+..+...+.
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence 3333334444444444444444443332 122333444444444444444444444444332 121 223334444444
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc--ChhhHHHHHHHHHHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKAHLYKARAM 203 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~ 203 (240)
+.|++++|...++...+... ..+...+..+...|.+.|++++|.+.|++..+. .|+ ...|..+...|
T Consensus 661 k~G~~eeA~~l~~eM~k~G~----------~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy 729 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGI----------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITAL 729 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Confidence 44444444444444443221 123345677777777777777777777766542 343 45577777777
Q ss_pred HHcCCHHHHHHHHHHHHH
Q psy17412 204 HNLGQREEAKEYIRELVE 221 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~ 221 (240)
.+.|+.++|.+.|++...
T Consensus 730 ~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777776554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-11 Score=83.89 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh---H
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---M 193 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~ 193 (240)
.|..|.-++..|+|..|...|..-++..|++... +..+++||.+++.+|+|+.|...|..+.+-.|++ +
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~--------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT--------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc--------chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence 7899999999999999999999999999998766 7889999999999999999999999999988764 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
++++.+|.+...+|+.++|...|+++++.+|..+.+...-..
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 899999999999999999999999999999998877655443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=89.18 Aligned_cols=134 Identities=16% Similarity=0.003 Sum_probs=118.6
Q ss_pred HHHHHHHHHcc---CcCchHHHHHHHH---hcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCch
Q psy17412 84 TNRALTLLHLQ---LYDPVLPDCDKAL---RLDEDNMKAHLYKARAMHSL---------GQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 84 ~~la~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~ 148 (240)
+.+|...+..+ ..+.|+..|.+++ .++|+...++..++.|++.. ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 55666665544 3567889999999 99999999999999998765 234678899999999999998
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 149 KLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 149 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
.. +..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|....
T Consensus 339 ~a-----------~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 339 KI-----------LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HH-----------HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 88 9999999999999999999999999999999999999999999999999999999999999997643
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=89.59 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=130.6
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
..++.--+.+...|+|++|.....+.+...|++..++.....+..+.++|++|+...++-......+. ..+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence 44555556778899999999999999999999999999999999999999999966655443222222 23789999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh---------------
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--------------- 191 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--------------- 191 (240)
+++.++|+..++ ..++.+... ....|.+++++|+|++|+..|+..++.+.+
T Consensus 92 lnk~Dealk~~~---~~~~~~~~l-----------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKL-----------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA 157 (652)
T ss_pred cccHHHHHHHHh---cccccchHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 999999999998 445554445 888899999999999999999998665421
Q ss_pred ----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 192 ----------------NMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 192 ----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
..+..++.|.++...|+|.+|++.++++++
T Consensus 158 ~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 158 ALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 245678999999999999999999999943
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-08 Score=76.23 Aligned_cols=186 Identities=18% Similarity=0.173 Sum_probs=149.8
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-ccHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-DNMKAHLYKA 121 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 121 (240)
...+......|..-+..|+|.+|.+...+.-+..+.....+..-+.+--++|+++.+-.++.++-+..+ +...+...++
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 345667777888888999999999999999888888888888888999999999999999999999844 3456788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC------------
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------------ 189 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------ 189 (240)
.+....|+++.|.....++++..|.++.. ......+|.+.|++.+...++.+.-+..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~v-----------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEV-----------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHH-----------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 99999999999999999999999999888 7777788888888887777666544321
Q ss_pred --------------------------h----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Q psy17412 190 --------------------------E----DNMKAHLYKARAMHNLGQREEAKEYIRELVE------------------ 221 (240)
Q Consensus 190 --------------------------~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------ 221 (240)
| +++.+...++.-+...|++++|.+..+.+++
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d 309 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGD 309 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCC
Confidence 1 2355667777788888988888877776653
Q ss_pred -------------hCCCcHHHHHHHHHhhhc
Q psy17412 222 -------------KYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 222 -------------~~p~~~~~~~~l~~~~~~ 239 (240)
..|++|.++..+++++-+
T Consensus 310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred chHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 456777777777776543
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=78.56 Aligned_cols=108 Identities=34% Similarity=0.586 Sum_probs=99.2
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
...+..+-.-|+-++..|+|.+|..-|..|+...|.. ..+|.+.|.+.++++.++.|+..+.++++++|.+..++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 3456677888999999999999999999999998875 45788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
...|.+|.++..|++|+..|+++++.+|....+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 999999999999999999999999999986554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=89.05 Aligned_cols=121 Identities=21% Similarity=0.189 Sum_probs=108.7
Q ss_pred HHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHH
Q psy17412 86 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165 (240)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 165 (240)
+-.+....++++.|+..+++..+.+|+ +...++.++...++..+|+..++++++..|.+... +...
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L-----------L~~Q 240 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSEL-----------LNLQ 240 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH-----------HHHH
Confidence 444555678899999999999988875 56678999999999999999999999999988777 9999
Q ss_pred HHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
+..+...++++.|+...+++++..|.+...|..++.+|..+|++++|+..++.+-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999998877554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=91.22 Aligned_cols=180 Identities=17% Similarity=0.119 Sum_probs=137.9
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCC--------------------HHHHHHHHHHHHHhcCC------ChHHHHHHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQ--------------------YEAALVQYDKAIEQVRD------SPVLYTNRALTLL 91 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~ 91 (240)
+........++++++|.+|...|+ ++.|.++|..-+++... ...++-++|..|+
T Consensus 127 eLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 127 ELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY 206 (639)
T ss_pred HHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee
Confidence 344455678899999999987764 34566666665555332 2457888999999
Q ss_pred HccCcCchHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHH
Q psy17412 92 HLQLYDPVLPDCDKALRLDED------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 165 (240)
-+|+|+.|+..-+.-+.+... .-.++.++|.++.-+|+++.|+++|+..+.+.-+ +..-...+...+.+
T Consensus 207 lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie-----lg~r~vEAQscYSL 281 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE-----LGNRTVEAQSCYSL 281 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH-----hcchhHHHHHHHHh
Confidence 999999999988777665432 2358899999999999999999999998765432 11111224457889
Q ss_pred HHHHHHhcccCchhhHHHHHhhcCh------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|..|.-..++++|+.++.+-+.+.. ....+++.+|..+-.+|..++|+.+.+..++.
T Consensus 282 gNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 282 GNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999998776643 24678899999999999999999998887765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=83.57 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=100.0
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
.++.|.-++..|+|..|...|..-++..|++ +.++++||.+++.+|++++|...|..+.+-.|+++.. |
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA--------p 215 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA--------P 215 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC--------h
Confidence 6889999999999999999999999999876 5799999999999999999999999999999998776 8
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
+.++.+|.+...+|+.++|...|.++++..|+...+....
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 8899999999999999999999999999999877665443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-09 Score=89.31 Aligned_cols=176 Identities=10% Similarity=0.055 Sum_probs=84.8
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-cccHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD-SPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKARA 123 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 123 (240)
...+..+...+.+.|++++|.+.|++..+.... +...|..+...|.+.|++++|.+.|....... ..+...|..+...
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344445555555555566665555555544321 34455555555555666666655555554322 1123445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCCchHH---------------H--------HHhccCchHHHHHHHHHHHHhcccC
Q psy17412 124 MHSLGQREEAKEYVRQLVEK----YPTRRKL---------------A--------IEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~----~~~~~~~---------------~--------~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
+.+.|++++|...+++.... .|+.... + -...+.+...|..+...|.+.|+++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence 55555555555555555431 2321100 0 0000112233555555555555555
Q ss_pred chhhHHHHHhhc--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 177 PVLPDCDKALRL--DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 177 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+|+..|.+..+. .|+ ...+..+...+.+.|++++|.+.+.+..+.
T Consensus 632 eAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 555555555443 232 334455555555555555555555555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=74.38 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=96.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH---HH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---AH 117 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~ 117 (240)
..+..++..|...+..|+|++|++.|+......|.. ..+...+|.+|+..+++++|+..+++.++++|.++. ++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 356788999999999999999999999999998865 568889999999999999999999999999998754 88
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCchHH
Q psy17412 118 LYKARAMHSLGQ---------------REEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 118 ~~la~~~~~~~~---------------~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+..|.+++.+.. ..+|...|++.++..|++...
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999998876 889999999999999997644
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-10 Score=72.42 Aligned_cols=97 Identities=22% Similarity=0.182 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDED---NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS 158 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (240)
+++.+|.++-..|+.++|+..|++++..... -..++..+|.++..+|++++|+..+++++...|++...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-------- 74 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-------- 74 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc--------
Confidence 4455555555555555555555555554322 23355555555555555555555555555554541111
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
..+...++.++...|+.++|+..+..++
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1124445555555555555555554444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-10 Score=93.26 Aligned_cols=187 Identities=12% Similarity=-0.004 Sum_probs=100.6
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
...+..+...+.+.|++++|.+.+...++.. +.+..++..+...|.+.|+.++|...|++..+ .+...|..+...|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y 401 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence 3455555555556666666666665555543 33344555555555555555555555555432 1233455555555
Q ss_pred HHcCCHHHHHHHHHHHHHc--CCCchHH----------------------HHHh--ccCchHHHHHHHHHHHHhcccCch
Q psy17412 125 HSLGQREEAKEYVRQLVEK--YPTRRKL----------------------AIEQ--VRDSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~--~~~~~~~----------------------~~~~--~~~~~~~~~~la~~~~~~~~~~~A 178 (240)
.+.|+.++|+..|++..+. .|+.... .... ...+...|..+...+.+.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 5555555555555554442 2222111 0000 011223466666677777777777
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+.+++. ...|+ ...|..+...+...|+.+.|...+++.++..|++...+..+..++
T Consensus 482 ~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 482 YAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred HHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 7666543 22333 445666666677777777777777777777776655555555444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-11 Score=70.46 Aligned_cols=67 Identities=28% Similarity=0.360 Sum_probs=62.1
Q ss_pred HHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999888877654
|
... |
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-09 Score=88.30 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=154.9
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.......|..+-+....-|.-+...+.|++|.+.. +...++..+..+|...+++++|.++++..++.......+|...|
T Consensus 1493 eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~ 1571 (1710)
T KOG1070|consen 1493 EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYA 1571 (1710)
T ss_pred hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHH
Confidence 34455566666666666677778888888888875 33568888999999999999999999999998888889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC--chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPT--RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
..+++.++-+.|...+.+|++.-|. +.+. ....|.+.++.|+.+.+...|+-.+.-+|...+.|..+
T Consensus 1572 ~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~-----------IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSLPKQEHVEF-----------ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred HHHhcccHHHHHHHHHHHHHhhcchhhhHHH-----------HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH
Confidence 9999999999999999999999998 5454 88889999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
...-.+.|+.+.+...|++++.+.-.-......+.+-
T Consensus 1641 id~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1641 IDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred HHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 9999999999999999999998765544444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-11 Score=69.16 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=59.5
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
++..|++++|++.|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999998877776664
|
... |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=85.62 Aligned_cols=109 Identities=24% Similarity=0.312 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
.-..|.-|+++|+|++|+.+|.+++..+|.++.. +.+.+..|++.++|..|...+..++.++.....+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~-----------~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY 168 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY-----------HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY 168 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccc-----------hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 4567999999999999999999999999988877 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
...+.+-..+|+..+|.+.++.++++.|.+.++...++.+
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 9999999999999999999999999999998887777654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-09 Score=90.34 Aligned_cols=175 Identities=11% Similarity=0.040 Sum_probs=117.8
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--cccHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--EDNMKAHLYKA 121 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 121 (240)
.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.|++..+.. |+ ...+..+.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll 433 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVL 433 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHH
Confidence 3445555666666666666666666665532 234556666666666666666666666655432 32 33455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCchHH------------------HHHhc--cCchHHHHHHHHHHHHhcccCch
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEK---YPTRRKL------------------AIEQV--RDSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~------------------~~~~~--~~~~~~~~~la~~~~~~~~~~~A 178 (240)
..+.+.|..++|...|+...+. .|+.... .+... ..+..+|..+...+...|+++.|
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 5566666666666666665542 2221000 01111 12345688888999999999999
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
...+++.++..|++...+..++.+|...|++++|.+.++...+.
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987755
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.4e-10 Score=71.83 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
+..++.-|...++.|+|++|++.|+.+....|.. ..+.+.+|.+++..+++++|+..+++.++++|+++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v------ 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV------ 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc------
Confidence 4566777777777778888877777777776543 4577777777777788888888888877777777665
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
+.+++..|.+++.... .++..+- ..+.+|. ...+|...|+++++..|+++-+..
T Consensus 84 --dYa~Y~~gL~~~~~~~--~~~~~~~-~~drD~~----------------~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 84 --DYAYYMRGLSYYEQDE--GSLQSFF-RSDRDPT----------------PARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred --cHHHHHHHHHHHHHhh--hHHhhhc-ccccCcH----------------HHHHHHHHHHHHHHHCcCChhHHH
Confidence 6667777777666544 1111111 2222222 234788888888888888765543
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-08 Score=76.56 Aligned_cols=174 Identities=10% Similarity=0.020 Sum_probs=145.6
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..+..+...|..-|.--.+++++..|...+++|+..+..+...|...+.+-++..+...|...+++++..-|.....|+.
T Consensus 67 rrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 67 RRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 34455678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
...+-..+|+..-|.+.|++-++..|+. .+|......-.+.+..+.|..+|++-+-.+|+ +..|...
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P~e------------qaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wiky 213 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEPDE------------QAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKY 213 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCCcH------------HHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHH
Confidence 9999999999999999999999999973 22666666666667777777777777777765 5667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+..-.+.|+..-|...|+.++....++
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 777777777777777777777665543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-10 Score=86.50 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=105.1
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 133 (240)
..+...++++.|++.+++..+.+|+ +...++.++...++..+|+..+++++...|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4445578899999999999888865 5566899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 134 KEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+...+++++..|.+... |..|+.+|...|+++.|+-.++.+
T Consensus 254 L~iAk~av~lsP~~f~~-----------W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFET-----------WYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHH-----------HHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999998888 999999999999999999777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=68.49 Aligned_cols=70 Identities=27% Similarity=0.329 Sum_probs=65.1
Q ss_pred HHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
..++...+++++|++++++++..+|+++..+..+|.++..+|++++|...++++++..|+++......+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999999999999999999887765544
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-11 Score=90.72 Aligned_cols=178 Identities=19% Similarity=0.158 Sum_probs=112.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc------c
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQV------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------D 112 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~ 112 (240)
....|.++|+.|+..++|.+|+++-..-+.+. -..+...-++|..+-.+|.|++|+.++.+-+.+.. .
T Consensus 54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~ 133 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL 133 (639)
T ss_pred HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh
Confidence 34556677888888888888877654433221 12244555778888888888888877776654432 2
Q ss_pred cHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHcCCCchHH--HHHhccCchHHHHHHHHHHHHhcccCc
Q psy17412 113 NMKAHLYKARAMHSLGQR-------------EEAKEYVRQLVEKYPTRRKL--AIEQVRDSPVLYTNRALTLLHLQLYDP 177 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~-------------~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (240)
...++|++|.+|...|+- +++...++.+.+....+-.. .+..-......+-++|..|+-+|+|++
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 345788888888766542 33444444444433332222 011111233557778888888888888
Q ss_pred hhhHHHHHhhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 178 VLPDCDKALRLDED------NMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 178 A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|+..-+.-+.+... .-.++.++|.++.-+|+++.|+++|+..+.+
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 88877776665443 2456788888888888888888888877644
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-09 Score=78.90 Aligned_cols=154 Identities=19% Similarity=0.106 Sum_probs=115.8
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.+...++.+.++|.+++-.|.|.+|.....+ .|+++.....+-.+-.+.++-++- -.|...++ +..+-...+
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~-~~fh~~Lq---D~~EdqLSL 157 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRI-LTFHSSLQ---DTLEDQLSL 157 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHH-HHHHHHHh---hhHHHHHhH
Confidence 3445678889999999999999999776544 467776665555555666665443 33444333 233456778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
+.+.+..-.|++|++.|++++.-+|+.... -..+|.||+++.-|+-+.+.+.-.++..|+++-+...++
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~al-----------NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-----------NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhh-----------HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 888888888999999999999999887666 788999999999999999999999999999988887777
Q ss_pred HHHHHcCCHHHHH
Q psy17412 201 RAMHNLGQREEAK 213 (240)
Q Consensus 201 ~~~~~~g~~~~A~ 213 (240)
...+++=+-..|.
T Consensus 227 cn~fRl~ngr~ae 239 (557)
T KOG3785|consen 227 CNLFRLINGRTAE 239 (557)
T ss_pred HHHhhhhccchhH
Confidence 7766643333333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=70.23 Aligned_cols=96 Identities=24% Similarity=0.218 Sum_probs=86.8
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc---cHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED---NMKAHLYK 120 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 120 (240)
.+++..|.++-..|+.++|+.+|++++....+. ..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999975444 568999999999999999999999999998888 77788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~ 142 (240)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999977764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.3e-09 Score=74.08 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=125.9
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 155 (240)
.+..++.-|...++.|++++|...|+.+....|.. ..+...++.++++.+++++|+...++-+++.|+++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----- 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----- 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-----
Confidence 46789999999999999999999999999988755 5689999999999999999999999999999998876
Q ss_pred cCchHHHHHHHHHHHHh--------cccCchhhHHHHHhhcChhhH-----------------HHHHHHHHHHHHcCCHH
Q psy17412 156 RDSPVLYTNRALTLLHL--------QLYDPVLPDCDKALRLDEDNM-----------------KAHLYKARAMHNLGQRE 210 (240)
Q Consensus 156 ~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~l~~~~~~~-----------------~~~~~la~~~~~~g~~~ 210 (240)
..+++..|.+++.. .-..+|+..++..+...|++. .--..+|+.|.+.|.+-
T Consensus 108 ---dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 108 ---DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ---hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 66677888776653 223467888889999998751 11256788999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 211 EAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 211 ~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.|+..++.+++..|+.+.....+..+.
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~ 211 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLE 211 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHH
Confidence 999999999999998877666665543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-09 Score=90.55 Aligned_cols=171 Identities=12% Similarity=0.012 Sum_probs=107.5
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHHHHHHHHHHHHHcCC
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 129 (240)
+-..|.+.|++++|...|+.. +.+...|..+...|.+.|+.++|++.|++..+. .|+. ..+..+-..+.+.|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcCh
Confidence 335666677777777777664 345666777777777777777777777776653 3433 334445556677777
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
+++|..+|+...+..+-.+. ...|..+...+.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.
T Consensus 605 v~ea~~~f~~M~~~~gi~P~---------~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPN---------LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCc---------hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCh
Confidence 77777777776643222111 223667777777777777777776654 23444 44555555566666777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 210 EEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 210 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.+....++++++.|++...+..++.++.
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 77777777777777777666666665543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=67.06 Aligned_cols=69 Identities=33% Similarity=0.480 Sum_probs=54.1
Q ss_pred HhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 53 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
..++...++|++|++.+++++..+|+++..+..+|.++...|++.+|...++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777888888888888888888888888888888888888888888888888888887776655443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-09 Score=79.44 Aligned_cols=185 Identities=19% Similarity=0.145 Sum_probs=128.4
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHc-cCcCchHHHHHHHHhcCcc----
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHL-QLYDPVLPDCDKALRLDED---- 112 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~---- 112 (240)
..+..+...+.++ +..++++|+++|++++...-.. ..++..+|.+|... |++++|+++|++++.....
T Consensus 73 ~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 3455556655555 5559999999999999874322 56888999999998 9999999999999977421
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 113 --NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 113 --~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
...++..+|.++..+|+|++|+..|+++....-++... .......++..+.|++..|++..|...+++....+|
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~----~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL----KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT----GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24577889999999999999999999998865443211 000123467788899999999999999999999988
Q ss_pred hh-----HHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 191 DN-----MKAHLYKARAMH--NLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 191 ~~-----~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
.. ......+..++- ....+++|+..|....+++|-...+...+
T Consensus 228 ~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~ 277 (282)
T PF14938_consen 228 SFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKI 277 (282)
T ss_dssp TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 53 333444444443 35677888888887777765444444333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-08 Score=72.56 Aligned_cols=173 Identities=31% Similarity=0.338 Sum_probs=97.5
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHccCcCchHHHHHHHHhcCc---ccHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRAL-TLLHLQLYDPVLPDCDKALRLDE---DNMKAH 117 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~ 117 (240)
.+.....+...|......+++..++..+..++...+.........+. ++...|+++.|...+.+++...| ......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34444555555555555566666666666665555544333333444 55566666666666666555444 233344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPT-RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
...+..+...++++.++..+.+++...+. .... +..++.++...++++.|+..+..++...|.....+
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEA-----------LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHH-----------HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHH
Confidence 44444455555666666666666665555 3333 56666666666666666666666666666544555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
..++..+...|..+++...+.+++...|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 240 YNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 55555555555566666666666666554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.6e-09 Score=89.15 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=138.4
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--cccHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD--EDNMKAHL 118 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 118 (240)
..+...|..+...|...|+.++|+++|++..+. .|+. ..+..+-..+.+.|+.++|..+|+...+.. ..+...|.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 556778999999999999999999999998874 4554 445556677889999999999999988433 23457889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 198 (240)
.+..++.+.|++++|.+.+++. ...|+ +.+|..+-..+...|+.+.+....+++++++|++...+..
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd------------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKM-PITPD------------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHC-CCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 9999999999999999999875 34454 2337777777788899999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
++.+|...|++++|.+..+...+.
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999998877643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-08 Score=65.87 Aligned_cols=155 Identities=20% Similarity=0.141 Sum_probs=126.8
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR-LDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
....=|.+.......+.++..|.. .-.+.+|.....+|++.+|...|++++. +..+++..+..+++..+..+++..|.
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 334446666666666667776654 4556799999999999999999999884 45677888999999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHH
Q psy17412 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 214 (240)
..+++..+.+|.. ..++....+|.++...|++.+|...|+.++...|+ +.+....+..+..+|+.++|..
T Consensus 145 ~tLe~l~e~~pa~---------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 145 QTLEDLMEYNPAF---------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhhcCCcc---------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 9999999988753 23455888999999999999999999999999987 6778888999999999988887
Q ss_pred HHHHHHH
Q psy17412 215 YIRELVE 221 (240)
Q Consensus 215 ~~~~~~~ 221 (240)
.+..+..
T Consensus 215 q~~~v~d 221 (251)
T COG4700 215 QYVAVVD 221 (251)
T ss_pred HHHHHHH
Confidence 7665553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-08 Score=70.55 Aligned_cols=178 Identities=29% Similarity=0.279 Sum_probs=152.9
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHH--hcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH-
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIE--QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR- 122 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~- 122 (240)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 57778888999999999999999999997 677888899999999999999999999999999988776555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-hHHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPT---RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-NMKAHLY 198 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~ 198 (240)
++...|+++.|...+.+++...|. ... .....+..+...++++.++..+.+++...+. ....+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAE-----------ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN 207 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHH-----------HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence 899999999999999999887763 222 2666666688889999999999999999999 6899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
++..+...++++.|...+..++...|.....+...+
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 243 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLA 243 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHH
Confidence 999999999999999999999999987444444333
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=64.51 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=92.8
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----HHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYKA 121 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la 121 (240)
...+...|..+...|+.+.|++.|.+++...|..+.+|.+.+..+.-.|+.++|+..+++++++..+. ..++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 45566788899999999999999999999999999999999999999999999999999999987443 45789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
.+|..+|+.+.|...|+.+-++.....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999999988876643
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=77.52 Aligned_cols=99 Identities=32% Similarity=0.494 Sum_probs=93.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
+.-+-..|+.++....|+.|+..|.+++..+|..+..|.+.+.||++.++++.+.....+++++.|+.+..++.+|....
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q psy17412 126 SLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~ 144 (240)
....|++|+..+.++..+.
T Consensus 90 ~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hhccccHHHHHHHHHHHHH
Confidence 9999999999999997654
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-08 Score=73.62 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=135.6
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh----------
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR---------- 108 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------- 108 (240)
....|.+-..+..+|.+|+...+|..|..+|++.-...|.........+...++.+.+..|+........
T Consensus 37 ~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 37 LERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 3456667778889999999999999999999999999999888888888888888888887766544322
Q ss_pred ------c--------------Cc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHH
Q psy17412 109 ------L--------------DE--DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA 166 (240)
Q Consensus 109 ------~--------------~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 166 (240)
. -| +......+.|.+.++.|+++.|++-|+.+++...-.+.. -++++
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll-----------AYniA 185 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL-----------AYNLA 185 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh-----------HHHHH
Confidence 1 12 345677888999999999999999999999998887776 89999
Q ss_pred HHHHHhcccCchhhHHHHHhhc----Chhh-------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 167 LTLLHLQLYDPVLPDCDKALRL----DEDN-------------------------MKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~l~~----~~~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
.++++.|+++.|+++....++. .|.. ..++...+-++++.|+++.|.+.+.
T Consensus 186 LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 9999999999999888776653 3321 3455667788999999998877653
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-07 Score=66.28 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
....-|.++..-|++++|+...... .+.++...-..++.++.+++-|...+++..+++.+..
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t------------- 171 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT------------- 171 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-------------
Confidence 3444567778888888888777663 3345555566677777777777777777777665432
Q ss_pred HHHHHHHHHH----hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 162 YTNRALTLLH----LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 162 ~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
+..+|..+.+ .+++.+|.-+|+..-+..|-.+.....++.+.+.+|++++|...++.++..++++|+...++
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2223332222 13344555555554444444444555555555555555555555555555555555544443
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-07 Score=65.86 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=133.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
+.-....-|.++...|++++|.+..... .+.++...-..++.++.+.+-|...+++..+.+.+. ....+|..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHH
Confidence 3345556678899999999999988773 334566666788999999999999999999887543 344455544
Q ss_pred HHc----CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 125 HSL----GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 125 ~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
... +++.+|.-.|+..-+..|..+.. ....+.|.+.+|+|++|...++.++..++++++++.++.
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~T~~l-----------lnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPPTPLL-----------LNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCCChHH-----------HccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 432 46889999999988866666655 999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCCcHHH
Q psy17412 201 RAMHNLGQREEAKE-YIRELVEKYPTRRKL 229 (240)
Q Consensus 201 ~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~ 229 (240)
.+...+|...++.. ++.+....+|.++-+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999877765 556666777877654
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-07 Score=73.41 Aligned_cols=174 Identities=18% Similarity=0.124 Sum_probs=133.1
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH---------HHHHHHH-HHHHccCcCchHHHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV---------LYTNRAL-TLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~-~~~~~~~~~~A~~~~~~~~ 107 (240)
....+|.+-++|+..-...-..|+-+.-.+.|++|+...|-... .|.+.+. .-....+.+.+.+.|+.++
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45568888899998888888889999999999999998775422 2332221 1134678899999999999
Q ss_pred hcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 108 RLDED----NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 108 ~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
.+-|. .+..|...|....++.+...|.+.+-.++...|.+.. .-....+-.++++++.+...|+
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl------------Fk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL------------FKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH------------HHHHHHHHHHHhhHHHHHHHHH
Confidence 99885 4678888899999999999999999999999998543 3444455566777777888888
Q ss_pred HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+-++..|.+..+|...|.+-..+|+.+.|...|+-+++..
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 8888888777777777777777777777777777666543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=64.46 Aligned_cols=65 Identities=26% Similarity=0.327 Sum_probs=31.4
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHccCcCchHHHHHHHHh
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQV-------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
..+.++..+|.++...|+|++|+.+|+++++.. |....++.++|.++...|++++|+++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555555555431 11133444444444444444444444444443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=81.66 Aligned_cols=70 Identities=23% Similarity=0.164 Sum_probs=61.4
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHH---HHHHHHHHHHccCcCchHHHHHHHHhcC
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVL---YTNRALTLLHLQLYDPVLPDCDKALRLD 110 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~ 110 (240)
.+|+.+..++++|..++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578888999999999999999999999999999999988754 8899999999999999999999998873
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=64.95 Aligned_cols=68 Identities=28% Similarity=0.362 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
|+...++.++|.+|...|++++|+.+|++++++. |....++.++|.++..+|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4456789999999999999999999999999652 2336689999999999999999999999998763
|
... |
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-08 Score=70.43 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (240)
+.+.++.++.-.|.|.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..++++.-+.... ++.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-----L~~~q~~~~ 253 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-----LDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-----hhccchhHH
Confidence 56667888888999999999999999988 566778888999999999999999999976544332 223333445
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHhh
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR---RKLVENYTQAF 237 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 237 (240)
+..+.+.++.-.+++..|...+.+++..+|.++.+..+.|.|.+.+|+..+|++.++.++...|.. .....++.-++
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 578888888889999999999999999999999999999999999999999999999999999874 33444444443
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-08 Score=68.87 Aligned_cols=117 Identities=24% Similarity=0.289 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEK--------YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
..++...|+-++..|+|.+|...|..|+.. .|..+.. +........++.|++.|+...|+|-++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW-~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW-LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 456788899999999999999999988753 4555554 5565666678999999999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 186 LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 186 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
+..+|++..+++..|.+....-+.++|...|.++++++|.-..+..
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999999999999999999999999997655443
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-07 Score=79.45 Aligned_cols=186 Identities=15% Similarity=0.124 Sum_probs=149.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-cCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ-VRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 113 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 113 (240)
....|..+-.|...-...++.++.++|.+..++|+.. ++.. ..+|..+-.....-|.-+.-.+.|++|-+.. +.
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~ 1529 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DA 1529 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-ch
Confidence 3456777777877777778888899999999988875 3322 2344444344444455555567777776654 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-- 191 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-- 191 (240)
..++..|..+|...+++++|.++++..++...+.... |..+|..+++.++-++|...+.+|++.-|.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v-----------W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV-----------WIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH-----------HHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 4578888999999999999999999999988866666 999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+.......|.+.++.|+.+.+...|+..+..+|...+.|.-|.+.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 788899999999999999999999999999999999999888765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=69.71 Aligned_cols=125 Identities=19% Similarity=0.110 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
+..++.+|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+|+.|.+.|...++++|.....
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya--------- 135 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA--------- 135 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH---------
Confidence 56788899999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
..+.|..++-.|+|.-|.+.+.+-.+.+|+++---..+-..-. .-++.+|..-+
T Consensus 136 --~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL 189 (297)
T COG4785 136 --HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNL 189 (297)
T ss_pred --HhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHH
Confidence 9999999999999999999999999999987643332222222 23455555443
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.3e-08 Score=71.21 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=139.5
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc--
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-- 113 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 113 (240)
......+++.+++..+....++.+++.+-+..+..-... ..+...+|..+..++.++++++.|+++++...++
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 344566778888888888888888888877777653222 3466679999999999999999999999775433
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 114 ----MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 114 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
..++..+|..+....++++|..+..++.++....... -.......-..+.++..+..+|+...|.++.+.+.++.
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 2478889999999999999999999998875432100 00000112347788889999999999999999997763
Q ss_pred ------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 190 ------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 190 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+.....+..+|.+|...|+.+.|..-|+.+...-
T Consensus 237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 4456778899999999999999999999998653
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-07 Score=65.90 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=119.2
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC------cccHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------EDNMKAH 117 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~ 117 (240)
.....+.+..++.-.|.|.-++..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|++.-+.. .....+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34556677788888999999999999999998 6678888899999999999999999999654322 2345577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
.+.+.++.-.+++.+|...+.+++..+|.++.. .++.|.|.+..|+..+|++.++.++...|..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a-----------~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA-----------NNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhh-----------hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 888889999999999999999999999998888 9999999999999999999999999999973
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=77.41 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=66.9
Q ss_pred hcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 75 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA---HLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
.+|+++..++++|.+++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999854 9999999999999999999999999984
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-07 Score=78.77 Aligned_cols=176 Identities=14% Similarity=0.075 Sum_probs=134.6
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc------c
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------N 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~ 113 (240)
.......+|..+...|++++|...+++++...+.. ..+...+|.++...|++++|...+.+++..... .
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34455567888899999999999999999864443 235677899999999999999999999865321 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh---
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--- 190 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--- 190 (240)
..++..+|.++...|++++|...+++++......... ..+.....+..+|.++...|++++|...+.+++....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE---QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 3466788999999999999999999998864331100 0000122356788899999999999999999877532
Q ss_pred --hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 191 --DNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 191 --~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.....+..++.++...|++++|...+.++....
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 235566778999999999999999999987653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.7e-07 Score=77.92 Aligned_cols=181 Identities=16% Similarity=0.151 Sum_probs=136.5
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-----c
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD--------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-----D 112 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~ 112 (240)
...+..+|.++...|++++|...+.+++..... ....+..+|.++...|++++|...+.+++.... .
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 456678899999999999999999999886322 123455788899999999999999999876532 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch---HH--H---------------------HHhc--c--Cc----
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR---KL--A---------------------IEQV--R--DS---- 158 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~--~---------------------~~~~--~--~~---- 158 (240)
...++..+|.++...|++++|...+.++..+.+... .. . +... + ..
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 345667789999999999999999999876533211 00 0 0000 0 00
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcCh------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
...+..++.++...|++++|...+.+++.... ....++..+|.++...|+.++|...+.+++......
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 11245788899999999999999999987632 235678889999999999999999999999887544
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=8e-09 Score=79.34 Aligned_cols=103 Identities=26% Similarity=0.388 Sum_probs=97.7
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 127 (240)
..-..+..++..+.|+.|+..|.++++++|+.+..+.+++..+.+.+++..|+..+.++++.+|....+|+..|.+...+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCchHH
Q psy17412 128 GQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+++.+|...|+....+.|+++.+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHH
Confidence 99999999999999999999877
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.7e-07 Score=60.66 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=112.2
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc--cHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIE-QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NMKAHLYK 120 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l 120 (240)
......+.+|+.+...|++.+|...|++++. ...+++..+..++...+..+++..|...+++..+.+|. .++....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3456677899999999999999999999987 46778889999999999999999999999999998874 46778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
|.++...|++.+|...|+.++...|. +......+..+.++|+.++|..-+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg------------~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG------------PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC------------HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999999999999999998 3336777888889998887766554443
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-06 Score=61.50 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=130.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH----
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVR------DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM---- 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 114 (240)
-++.+..-|+.|--.++|+.|-..|.++-+..- +....|...+.||.+ .+..+|+.++++++++..+-.
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHH
Confidence 456667777788888888888888888766521 124566666677655 499999999999998875433
Q ss_pred --HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 115 --KAHLYKARAMHSL-GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 115 --~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
..+..+|.+|... .++++|+.+|+++-+........ ......+...+..-..+++|.+|+..|+++....-+
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-----ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-----SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455788888765 89999999999998766543322 111234677777788899999999999998765443
Q ss_pred h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 192 N-------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 192 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
+ -+.++.-|.|++-.++.-.+...+++..+++|...+.
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 3 2234556777777789888999999999999976543
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=70.10 Aligned_cols=94 Identities=26% Similarity=0.351 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
..-|..++.-.+|..|+.+|.+++.++|..+.. +.+.+.|+++.++++.+.....++++++|+.+...+
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y-----------~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASY-----------YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchh-----------hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 345667777789999999999999999998777 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.+|.+......+++|+..+.++..+
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.5e-07 Score=68.35 Aligned_cols=138 Identities=10% Similarity=0.051 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS-LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (240)
+|..+.....+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~---------- 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF---------- 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH----------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH----------
Confidence 455666666666667777777777775555566777777777666 445555777777777777777666
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM---KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
|......+...++.+.|...|++++..-|... .+|......-...|+.+...+..+++.+..|++....
T Consensus 73 -~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 73 -WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred -HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 77777777777777777777777776655433 5677777777778888888888888887777755443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-07 Score=57.16 Aligned_cols=92 Identities=27% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh----hHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED----NMKA 195 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~ 195 (240)
.|......|+.+.|++.|.+++.+.|..+.. |++.+..+.-.|+.++|+..+++++++... -..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSa-----------yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASA-----------YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHh-----------hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 3444444555555555555555555554444 555555555555555555555555544321 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+...|.+|..+|+-+.|...|+.+-++
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 445555555555555555555554444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-07 Score=62.52 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc----------cCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL----------YDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
|+.|.+.++.....+|.+.+. +.+=|.++..+.+ +++|+.-|+.++.++|+..+++..+
T Consensus 7 FE~ark~aea~y~~nP~Dadn-----------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~l 75 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN-----------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCL 75 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH-----------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH-----------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 678899999999999998877 7777777666533 5678888899999999999999999
Q ss_pred HHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 200 ARAMHNLGQ-----------REEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 200 a~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
|.++..++. +++|..+|+++...+|++...+..+..
T Consensus 76 GnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 76 GNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999987664 678999999999999999887776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=65.54 Aligned_cols=107 Identities=27% Similarity=0.378 Sum_probs=95.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCC----------hHHHHHHHHHHHHccCcCchHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDS----------PVLYTNRALTLLHLQLYDPVLPDCDK 105 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~ 105 (240)
.....+...|+-++..|+|.+|...|..|+.. .|.. ...+.+...|+...|+|-++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 45678889999999999999999999999865 3433 34678899999999999999999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
.+...|.+..+++..|.+....-+.++|...+.++++++|.-...
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999999975433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.8e-08 Score=51.03 Aligned_cols=43 Identities=30% Similarity=0.338 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
.++..+|.++..+|++++|+..|+++++.+|+++.++..++++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4678888888889999999999998888888888888888763
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=76.36 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 198 (240)
.-+...+.-+.|+.|+..|.++++++|+.... +.+.+..+.+.+++..|+..+.++++.+|....+|+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~-----------~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r 77 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIY-----------FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR 77 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceee-----------echhhhhheeechhhhHHHHHHhhhhcCchhhheeee
Confidence 34555566677777777777777777776665 7777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.|.+.+.++++.+|+..|+......|+++.+...+..
T Consensus 78 rg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 78 RGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred ccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 7777777777777777777777777777776665544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-07 Score=61.49 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCc----------CchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY----------DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ-- 129 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-- 129 (240)
|+.|.+.++.....+|.++..+++-|.++..+.++ ++|+.-|+.++.++|+..++++.+|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 45666666666666777766666666666554333 345555566666677777777777776655533
Q ss_pred ---------HHHHHHHHHHHHHcCCCchHH
Q psy17412 130 ---------REEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 130 ---------~~~A~~~~~~a~~~~~~~~~~ 150 (240)
|++|..+|+++...+|++...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 677888888888889987654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-06 Score=59.17 Aligned_cols=187 Identities=16% Similarity=0.073 Sum_probs=131.3
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcC-----ccc
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLD-----EDN 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~ 113 (240)
.+..+..-+..+...++|++|...+.++.+...++ ...+-..+........+.++..+++++..+. |+.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 45566677778888899999999999999776554 3345556667777889999999999998764 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc-----
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL----- 188 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----- 188 (240)
...-...+--....-++++|+..|++++.+..++... ....+.+...+.++.+..++++|-..+.+-...
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~-----~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRD-----QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchH-----HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 4444445555667789999999999998876554322 122455777888999999999988777765332
Q ss_pred -ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Q psy17412 189 -DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY----PTRRKLVENYTQA 236 (240)
Q Consensus 189 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~ 236 (240)
.++....+.....++....+|..|..+++...+.. |++.....+|-..
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 23334455666666777789999999999876653 3333444444433
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-07 Score=68.74 Aligned_cols=107 Identities=29% Similarity=0.478 Sum_probs=95.7
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
...+..+-.-|+.+++.++|..|+..|.+.++..-.+ ..+|.++|.|.+.+|+|..|+..+.+++.++|.+..+++
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 3478888899999999999999999999999975433 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
.-|.|++.+.++.+|..+.+..+.++.+...
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999999999999999999988877655433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-06 Score=62.27 Aligned_cols=162 Identities=11% Similarity=0.023 Sum_probs=112.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-HHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-MKAHLYKARA 123 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 123 (240)
..+.-+..+......|++.+|...|..++...|++..+...++.|+...|+.+.|...+...-...... ..........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344556678888999999999999999999999999999999999999999999988776643222211 1110011122
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--hHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NMKAHLYKAR 201 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~ 201 (240)
+.+.....+. ..+++.+..+|++... .+.+|..+...|+.+.|.+.+-..++.+.+ +..+...+-.
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~a-----------a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle 280 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEA-----------ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE 280 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 2222222221 2344555667776666 999999999999999999999888887654 4556666666
Q ss_pred HHHHcCCHHHHHHHHHH
Q psy17412 202 AMHNLGQREEAKEYIRE 218 (240)
Q Consensus 202 ~~~~~g~~~~A~~~~~~ 218 (240)
++...|.-+.+...+++
T Consensus 281 ~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 281 LFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHhcCCCCHHHHHHHH
Confidence 77666655555554444
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=64.78 Aligned_cols=175 Identities=17% Similarity=0.073 Sum_probs=133.4
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc----CCC--hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQV----RDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---- 113 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 113 (240)
..-..+-.+..+....|.|++++.+--..++.. ... ..++.+++..+....++.+++.+.+..+.+-...
T Consensus 41 ~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~ 120 (518)
T KOG1941|consen 41 GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL 120 (518)
T ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Confidence 344445556667778888888776654444432 111 4578899999999999999999998888764322
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-
Q psy17412 114 -MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED- 191 (240)
Q Consensus 114 -~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~- 191 (240)
..+...+|..+..++.++++++.|+.+++...++.+. --.-.++..+|..+....++++|+-+..++.++-..
T Consensus 121 ~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~-----~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 121 GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA-----MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-----eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 2567779999999999999999999999986654332 112245889999999999999999999998876432
Q ss_pred ---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 ---------NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
..-+++.++..+..+|....|.++.+++.++.
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 24467889999999999999999999988764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.7e-05 Score=58.41 Aligned_cols=176 Identities=14% Similarity=-0.019 Sum_probs=127.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHH---ccCcCchHHHHHHH-HhcCcccHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ----VRDSPVLYTNRALTLLH---LQLYDPVLPDCDKA-LRLDEDNMKA 116 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~-~~~~~~~~~~ 116 (240)
.++...++-..|....+|+.-+++.+..-.. .++.+.+....|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3455566666788889999999988887665 45567788889999988 89999999999994 4556778889
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh-
Q psy17412 117 HLYKARAMHSL---------GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL- 186 (240)
Q Consensus 117 ~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l- 186 (240)
+..+|.+|-.+ ...++|+..|.++.++.|+... =.|++.++.-.|.-.+....+.+..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~------------GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS------------GINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc------------hHHHHHHHHHcCCcccchHHHHHHHH
Confidence 99999887432 3578999999999999976433 3566666666665433332222222
Q ss_pred hc-----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 187 RL-----------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 187 ~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
++ .-.+-.....++.+..-.|++++|...++++++..|........
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St 344 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELEST 344 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHH
Confidence 11 11234455667788889999999999999999998877654433
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-06 Score=66.12 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=117.4
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-cCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc--
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ-VRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-- 111 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-- 111 (240)
.++|.+...|... +-+..|+..+-+..|..|+.. +|.- ...|...|..|...|+.+.|...|+++....-
T Consensus 343 RQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 3466666666654 344578899999999999875 5542 56899999999999999999999999998763
Q ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH--------HHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 112 --DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL--------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 112 --~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
+-..+|...|..-....+++.|...++++... |..+.. .......+..+|..++......|-++.....
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 23578999999999999999999999999765 322211 1122223334444444444444555555555
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 182 CDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 182 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
|++.+.+.--.+.+..+.|..+....-++++.+.|++.+.++
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 555554444444444444444444444444444444444443
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-07 Score=66.36 Aligned_cols=102 Identities=26% Similarity=0.293 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
-+..-|.-|+..++|..|+..|.++++..-.+++. ++.+|.|.|.+....|+|..|+..+.+++..+|++..+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 34445556666666666666666666654444433 23446666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
++.-|.+++.+.++++|..+++..+..+.
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 66666666666666666666655555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-06 Score=64.20 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=41.0
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-cCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 129 (240)
.......+.+..+.|...|.+|.+..+....+|...|.+.+.. ++.+.|...|+.+++..|.+...|......+...|+
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 3333334444444444445444433333344444444443332 223334455555554444444444444444444455
Q ss_pred HHHHHHHHHHHHHcCC
Q psy17412 130 REEAKEYVRQLVEKYP 145 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~ 145 (240)
.+.|...|++++..-+
T Consensus 86 ~~~aR~lfer~i~~l~ 101 (280)
T PF05843_consen 86 INNARALFERAISSLP 101 (280)
T ss_dssp HHHHHHHHHHHCCTSS
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5555555555444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-06 Score=70.20 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=95.4
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKE 135 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 135 (240)
....+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34667888888888888888888888888888888888999888877777777777777778888888888899999999
Q ss_pred HHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
+|++++..+|. ... ...+-.+|.+.+.|.+-.+.--+..+..|++
T Consensus 99 ~Ye~~~~~~P~-eel-----------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 99 LYERANQKYPS-EEL-----------LYHLFMAYVREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHHHHHhhCCc-HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999888888 444 5666666666666655444444444455544
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-05 Score=62.98 Aligned_cols=186 Identities=14% Similarity=0.028 Sum_probs=135.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|....+....|..+.+.|+.++|..+++..-...+++...+..+-.||..+|++++|...|++++..+|. ....+
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 45677788888889999999999999998888877778888888899999999999999999999999999999 78888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------------HHHhc-c--CchHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------------AIEQV-R--DSPVLY 162 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------------~~~~~-~--~~~~~~ 162 (240)
.+-.+|.+.+.|.+-.+.--+..+..|+.+.. .+... + ...++
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~- 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI- 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH-
Confidence 88888888888877666655666677766544 00000 0 00011
Q ss_pred HHHHHHHHHhcccCchhhHHHHH-hhc-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKA-LRL-DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~-l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
...-.++...|++++|...+..- .+. .+.+...-......+...+++.+-.+...+++..++++
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 11123344567788888777332 222 33334444455667778889999888888888888887
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-05 Score=59.90 Aligned_cols=161 Identities=11% Similarity=-0.064 Sum_probs=130.7
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc-Cccc---HHHHHHHHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL-DEDN---MKAHLYKARAM 124 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~ 124 (240)
....+......|++.+|....++.++..|.+..++..--..++..|+...-...+++.+-. +++. .-+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344556677899999999999999999999888888888999999999999999999866 5544 44555677788
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh----HHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYKA 200 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la 200 (240)
...|-|++|.+.-+++++++|.+.-. ...++.++.-.+++.++.+...+.-...... ..-|..-+
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa-----------~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWA-----------SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHH-----------HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 89999999999999999999998766 7788888888999999999887754433221 22355677
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy17412 201 RAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~ 220 (240)
.+++.-+.++.|++.|.+-+
T Consensus 255 l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhcccchhHHHHHHHHHH
Confidence 88888899999999997644
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-05 Score=63.16 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=132.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc---------
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD----SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--------- 111 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------- 111 (240)
-...|...|..|...|+.+.|...|+++.+..=. -..+|..-|..-+...+++.|+...+++...-.
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 4567889999999999999999999999887422 267899999999999999999999999874421
Q ss_pred ---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 112 ---------DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 112 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
.+..+|...+......|-++.....|++.+++.--.|.. ..|.|..+....-++++.+.|
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi-----------i~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI-----------IINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH-----------HHHHHHHHHhhHHHHHHHHHH
Confidence 124578888889999999999999999999987776666 888888888888888999999
Q ss_pred HHHhhcC--hhhHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 183 DKALRLD--EDNMKAHLYKARA---MHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 183 ~~~l~~~--~~~~~~~~~la~~---~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
++.+.+. |...++|...-.. -+.--..+.|...|++++..-|.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 9888875 4445555432222 22234667888888888887763
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-07 Score=48.24 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=24.1
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRA 87 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 87 (240)
.+..+|..+...|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555566666666666666666666666666666655554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.7e-05 Score=56.43 Aligned_cols=185 Identities=16% Similarity=0.124 Sum_probs=128.7
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
....+..+..-++...-.|+++.|.+-|+..+. +|.. ...+..+-.--...|..+.|..+-..+....|.-+.++...
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At 194 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT 194 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH
Confidence 444566777778888899999999999987654 3332 12222232333568999999999999999999988888877
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---CCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKY---PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
-...+..|+|+.|++..+...... ++..+- ....++...+..... -+...|...-..++++.|+....-.
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR------~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav 267 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAER------SRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAV 267 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH------HHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHH
Confidence 778889999999999998765432 221111 011122222222222 3466778888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.-+..++..|+..++-..++.+.+..| +|+++..+.+
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~ 304 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVR 304 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHH
Confidence 888888888888888888888888877 4555555443
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-07 Score=70.24 Aligned_cols=101 Identities=26% Similarity=0.392 Sum_probs=92.8
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
+.-....+...+..|.+++|++.|..++.++|.....+..++.+++++++...|+..+..++.++|+...-+-..|....
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 33445566777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCC
Q psy17412 126 SLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.+|+|++|...+..+.+++-+
T Consensus 194 llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HhhchHHHHHHHHHHHhcccc
Confidence 999999999999999987644
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-05 Score=62.32 Aligned_cols=172 Identities=21% Similarity=0.127 Sum_probs=122.7
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc------------------
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------------------ 112 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------------ 112 (240)
.+.....+..+.+.-++.-.+|++++|+.+.+|..++.-. .....+|..+++++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3445566788999999999999999999998887776521 22345666666666543210
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 113 -------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 113 -------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
...+...+|.|..++|+.++|++.++..++..|.... ..++.++..++...+.|.++...+.+-
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~---------l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN---------LNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch---------hhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1234567999999999999999999999998876322 235899999999999999999988886
Q ss_pred hhc-ChhhHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 186 LRL-DEDNMKAHLYKARAMHN-LGQ---------------REEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 186 l~~-~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
-+. -|+.+...+..+.+..+ .|+ -..|.+.+.++++.+|.-+......
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 433 25555555554444322 222 1347788999999999887765443
|
The molecular function of this protein is uncertain. |
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-05 Score=53.66 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=106.1
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHc-cCcCchHHHHHHHHhcCcc-----
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV------LYTNRALTLLHL-QLYDPVLPDCDKALRLDED----- 112 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~----- 112 (240)
-+..+...+ -.++.++..+|++.+++++++..+... .+..+|.+|..- .++++|+.+|+++-+....
T Consensus 73 aat~YveA~-~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAA-NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHH-HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 344444444 445666999999999999999876544 445788888765 8999999999999765432
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc-hHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 113 -NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 113 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
.-.++...+..-...++|.+|+..|++.....-+++-. ... -+.++.-|.|++-..+.-.+...+++..+.+|
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL-----Kys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL-----KYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-----HhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 12467777888889999999999999998866555432 001 12356667888887888888889999999999
Q ss_pred hhHH
Q psy17412 191 DNMK 194 (240)
Q Consensus 191 ~~~~ 194 (240)
...+
T Consensus 227 ~F~d 230 (288)
T KOG1586|consen 227 AFTD 230 (288)
T ss_pred cccc
Confidence 7543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-07 Score=45.51 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=18.1
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 103 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
|+++++++|+++.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-07 Score=45.58 Aligned_cols=33 Identities=33% Similarity=0.267 Sum_probs=31.0
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHH
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAK 213 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 213 (240)
+|+++++++|+++.+|+++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=58.82 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=109.5
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCchHHHHHhccCchHHHH
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK-YPTRRKLAIEQVRDSPVLYT 163 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~ 163 (240)
.-+.+.+-.|++.+|....++.++-.|.+.-++..--..++.+|+.......+++++.. +++-|-. ..+.-
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~--------sYv~G 179 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY--------SYVHG 179 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH--------HHHHH
Confidence 34556677899999999999999999999888888888999999999999999998877 5554322 34466
Q ss_pred HHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 164 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
.++..+...|-|++|.+..+++++++|.+..+...++.++...|++.++.++..+-
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 67888899999999999999999999999999999999999999999999987653
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.2e-05 Score=60.97 Aligned_cols=77 Identities=18% Similarity=0.050 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
....++|.+..+.|-...|-..+.+++.+....+-..+.+|+.+..+.+.+.|++.|+.++.++|+++.....+..+
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 44778888888888888999999999988877788899999999999999999999999999999999887766543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=42.99 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567888888888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=42.99 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56777777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=67.15 Aligned_cols=149 Identities=16% Similarity=0.108 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCC---chHHHHHhccC
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV-EKYPT---RRKLAIEQVRD 157 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~---~~~~~~~~~~~ 157 (240)
+.......+.+..+...+....+.+.....+.+.+....+..++..|++.+|.+.+...- ...|. .+.. .
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~------~ 281 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQL------S 281 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchh------h
Confidence 344455666777777777777777877778889999999999999999999999876542 22222 1111 0
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHhh-c--------Ch---------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALR-L--------DE---------DNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~--------~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
.-..+.++|.++++.|.|..+..+|.++++ . .| ....+.++.|..+...|++-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 123478999999999999999999999995 1 11 13568899999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHh
Q psy17412 220 VEKYPTRRKLVENYTQA 236 (240)
Q Consensus 220 ~~~~p~~~~~~~~l~~~ 236 (240)
+..+-.+|.+|..++.+
T Consensus 362 v~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHhcCcHHHHHHHHH
Confidence 99999999999999876
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-05 Score=61.72 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=117.5
Q ss_pred hCCHHHHHHHHHHHHHhcCCC--hHH------HHHHHHHHH----HccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDS--PVL------YTNRALTLL----HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~--~~~------~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
.||-+.+++.+.++.+. ++- +.+ |+.....+. ...+.+.|.+.+.......|+..-..+..|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 58999999999998773 222 111 111111111 12345668888999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-hHHHHHHHHHHHHH
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-NMKAHLYKARAMHN 205 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~ 205 (240)
.|+.++|+..+++++......+.. ..-.++.+|.++.-+.+|++|..++.+..+.+.- .....+..|.++..
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 999999999999998544433222 2345899999999999999999999999987554 34445677888999
Q ss_pred cCCH-------HHHHHHHHHHHHhC
Q psy17412 206 LGQR-------EEAKEYIRELVEKY 223 (240)
Q Consensus 206 ~g~~-------~~A~~~~~~~~~~~ 223 (240)
.|+. ++|.+.+.++-...
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999 88888888876543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.8e-06 Score=64.96 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=99.5
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~ 134 (240)
..+.+.|.+.+....+..|+.....+..|.++...|+.++|++.+++++...... .-+++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999988544332 236889999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhccc-------CchhhHHHHHhh
Q psy17412 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY-------DPVLPDCDKALR 187 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~l~ 187 (240)
.++.+..+.+.-+... ..+..|.|+...++. ++|.+.+.++-.
T Consensus 326 ~~f~~L~~~s~WSka~----------Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAF----------YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHH----------HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999976654333 466778889999998 777777777643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=42.28 Aligned_cols=34 Identities=35% Similarity=0.483 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=42.29 Aligned_cols=33 Identities=36% Similarity=0.494 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
.+++.+|.+++.+|++++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777888888888888888888888777763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-06 Score=65.53 Aligned_cols=155 Identities=10% Similarity=-0.051 Sum_probs=117.6
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHH-HhcCcc--------cHHHHHHHHH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA-LRLDED--------NMKAHLYKAR 122 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~--------~~~~~~~la~ 122 (240)
.-..+....+...+....+.++....+++......+..++..|++.+|.+.+... +...|. ...+|.++|.
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 3445566677777777777788888888889999999999999999998877553 222222 2235788999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-cC----CC-chHH-HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVE-KY----PT-RRKL-AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~-~~----~~-~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+++++|.|.-+..+|.++++ .. .. .+.. ..-.......+.++.|..+...|+.-.|.++|.+++.....++..
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999996 11 00 0000 000011345779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q psy17412 196 HLYKARAMHNL 206 (240)
Q Consensus 196 ~~~la~~~~~~ 206 (240)
|..++.+++..
T Consensus 372 WLRlAEcCima 382 (696)
T KOG2471|consen 372 WLRLAECCIMA 382 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00028 Score=48.61 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 100 LPDCDKALRLDEDNM---KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
.....+....+|.+. .+-..++..+...|++++|+..++.++....+..-. +.+-..+|.+....|.++
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk--------~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLK--------ALAALRLARVQLQQKKAD 143 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHH--------HHHHHHHHHHHHHhhhHH
Confidence 334444444443332 345678889999999999999999998754443222 345788999999999999
Q ss_pred chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 177 PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 177 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+|+..+.......- .+......|.++...|+.++|+..|++++..+++.+
T Consensus 144 ~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 144 AALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99998876543221 234456789999999999999999999999975543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.9e-05 Score=50.70 Aligned_cols=94 Identities=23% Similarity=0.224 Sum_probs=72.8
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----------------------hHHHHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDS----------------------PVLYTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
...|......++...++..+.+++...... ..+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334555666778888888888888764221 2355667788889999999999999999
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 108 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
..+|.+..++..+-.++...|+..+|+..|++..+.
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=98.21 E-value=6e-05 Score=50.69 Aligned_cols=102 Identities=25% Similarity=0.186 Sum_probs=70.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHH------H-----HhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLA------I-----EQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~-----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
|......++.+.++..+++++.+...+.-.. + ........+...++..+...|++++|+..+.+++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 4444555666667777777766554322110 0 0001112346777888889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|.+..++..+..++...|+..+|+..|+++...
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00021 Score=52.50 Aligned_cols=145 Identities=20% Similarity=0.223 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
.-+.-+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+... |.+... .....
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~------~~~~~ 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQD------KAAHG 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchh------hHHHH
Confidence 34455667788999999999999999999999999999999999999999988877653 332211 00000
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHhh
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT--RRKLVENYTQAF 237 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~ 237 (240)
.......+.+.....+. ..+.+.+..+|++..+.+.+|..+...|+.++|.+.+-..++.+-. +..++..+..++
T Consensus 206 l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f 282 (304)
T COG3118 206 LQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELF 282 (304)
T ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 11112333444444433 4566778889999999999999999999999999999988887543 445555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.5e-05 Score=59.25 Aligned_cols=135 Identities=13% Similarity=0.043 Sum_probs=101.7
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH------------H
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA------------I 152 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------~ 152 (240)
.+..-..+..+.+.-++..++|++++|+.+.+|..++.-. .....++..+++++++......... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3444555677888889999999999999999998887632 2345778888888877544322110 0
Q ss_pred H--hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 153 E--QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 153 ~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
. .......+...+|.|..+.|+.++|++.+...++..|. +..++.++..++..++.+.++...+.+.-.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0 00112456778999999999999999999999988775 567899999999999999999998888643
|
The molecular function of this protein is uncertain. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0025 Score=48.86 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=71.8
Q ss_pred HhhHHHHHHhchhH-HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHH---
Q psy17412 32 AMRRFEERKARQDI-ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL--- 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--- 107 (240)
++..++....+|.. ...+..+-......|+.+.|+.+-..+....|.-+.++...-...+..|+++.|++..+...
T Consensus 139 Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 139 ARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 34444444444432 22223333334567888888888888888888887777777777777888888877776543
Q ss_pred --------------------------------------hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 108 --------------------------------------RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 108 --------------------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
++.|+...+-..-+..++..|+..++-..++.+.+..|.
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 222333344445566667777777777777777766664
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-06 Score=64.13 Aligned_cols=95 Identities=25% Similarity=0.312 Sum_probs=87.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
.+.-.+..|.+++|+..+..+++++|..... +...+.++.++++...|+..+..+++++|+....+-..
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l-----------~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAIL-----------YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhh-----------cccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 3445567789999999999999999998777 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 200 ARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
+.+...+|++.+|...+..+.+++-+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999988643
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=39.02 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
.+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46788888888888888888888888888774
|
... |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0012 Score=55.21 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=112.4
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR 130 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 130 (240)
..|......|-.++|..+|.+.-..+ .+-..|...|.+++|.+..+.--++. --..|++.+..+...++.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 34566778888899999888875432 34567778888888877665432222 234688889888999999
Q ss_pred HHHHHHHHHHH----------HcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC-----------
Q psy17412 131 EEAKEYVRQLV----------EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD----------- 189 (240)
Q Consensus 131 ~~A~~~~~~a~----------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----------- 189 (240)
+.|+++|+++- .-+|..... .-.-..++.+|..-|......|+.+.|+.+|..+-...
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~-Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQ-YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHH-HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 99999998762 222222111 11112345667778888888999999999998875432
Q ss_pred ----------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 190 ----------EDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 190 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
..+..+-+.+|+.|...|+..+|+.+|.++-.
T Consensus 954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22455678999999999999999999887653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00078 Score=46.48 Aligned_cols=117 Identities=16% Similarity=0.083 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 64 AALVQYDKAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYV 137 (240)
Q Consensus 64 ~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~ 137 (240)
+......+....++.+. ..-..++..+...|++++|+..++.++....+. .-+-.+++.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555554442 244567888889999999999999888654332 235678899999999999999888
Q ss_pred HHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
.....-.-. +......|.++...|+-++|+..|++++...++.
T Consensus 150 ~t~~~~~w~------------~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEESWA------------AIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hccccccHH------------HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 754332111 2235667999999999999999999999886543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.7e-05 Score=37.41 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=23.1
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRD 78 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 78 (240)
+.|+.+|.++...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677777777777777777777777777663
|
... |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00026 Score=50.51 Aligned_cols=134 Identities=19% Similarity=0.117 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
..+..-+.+|...+++++|..++.++.+-..++ ..++-..+.+...+..+.++..+++++..+.-++...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp---- 107 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP---- 107 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc----
Confidence 344455678888899999999999998554433 3456667777888899999999999998765332211
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------MKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
+.+..-...+.-.....+.++|++.|++++.+-..+ .+.+...++++.+..++++|-..+.+-.
T Consensus 108 --dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 108 --DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred --chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 223334455555667788999999999998764332 4556778889999999999888776543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0023 Score=49.07 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
..+...+.......|-.+.|+..++..++.+
T Consensus 154 l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 154 LYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999876
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.1e-05 Score=36.90 Aligned_cols=32 Identities=38% Similarity=0.619 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56788888888888888888888888888864
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00037 Score=50.24 Aligned_cols=170 Identities=17% Similarity=0.202 Sum_probs=99.2
Q ss_pred HhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-CcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH-HHHH
Q psy17412 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQRE-EAKE 135 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~ 135 (240)
+...-+.|+.+...++..+|.+-.+|..+-.+...++ +..+-++++...++-+|.+.++|...-.+....|++. .-+.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3445566677777777777776666665555555443 3455566666667767777777766666666666665 5566
Q ss_pred HHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH-cC-----CH
Q psy17412 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN-LG-----QR 209 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g-----~~ 209 (240)
..+.++..+..+.-+ |...-.+...-+.++.-+.+....++.+-.+-.+|...-.+... .| ..
T Consensus 135 f~~~~l~~DaKNYHa-----------WshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~l 203 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHA-----------WSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAEL 203 (318)
T ss_pred HHHHHHhccccchhh-----------hHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHH
Confidence 666666665555544 66666666666667766666666666655444444322111111 11 12
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 210 EEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 210 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.-+.+..+.+...|++..+|..+.-+++
T Consensus 204 e~El~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 204 ERELNYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 33445555666666666666666655544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0017 Score=50.46 Aligned_cols=147 Identities=18% Similarity=0.074 Sum_probs=110.3
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch------
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE----DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR------ 148 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 148 (240)
....|...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 356788899999999999999999999887652 2467788889999999999999999999888211111
Q ss_pred HH-----------------HHHhccCchHHHHHHHHHHHHh------cccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 149 KL-----------------AIEQVRDSPVLYTNRALTLLHL------QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 149 ~~-----------------~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
.. ........+.++..+|...... +..++++..|..+++.+|+...+|+..|..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00 0011122346677777777777 888899999999999999999999988888654
Q ss_pred cCCH-----------------HHHHHHHHHHHHhCCC
Q psy17412 206 LGQR-----------------EEAKEYIRELVEKYPT 225 (240)
Q Consensus 206 ~g~~-----------------~~A~~~~~~~~~~~p~ 225 (240)
.=+. ..|+..|-+++...+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 305 LLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 3211 3488888888888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.011 Score=47.87 Aligned_cols=183 Identities=12% Similarity=0.057 Sum_probs=140.8
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-cccHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKA 121 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 121 (240)
+.+...|..-.......|+++...-.|++++--.......|...+.-....|+.+-|-..+..+.+.. |..+.....-+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34556677777777889999999999999988777788999999999999999999988888777665 67777888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchh---hHHHHHhhcChh---hHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL---PDCDKALRLDED---NMKA 195 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~---~~~~~~l~~~~~---~~~~ 195 (240)
......|++..|...++++..-.|+.... -...+.+..+.|..+.+. +.+.....-..+ ....
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~-----------~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEV-----------VLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhh-----------HHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 89999999999999999999888886665 555566677778877776 333333221111 2344
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 196 HLYKARA-MHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 196 ~~~la~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+...++. +.-.++.+.|...+.++....|++...+..+.++
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRF 484 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHH
Confidence 5555555 4457889999999999999999998877776654
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0051 Score=51.71 Aligned_cols=176 Identities=16% Similarity=0.073 Sum_probs=112.5
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHH----------HhcCC----------ChHHHHHHHHHHHHccCcCchHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAI----------EQVRD----------SPVLYTNRALTLLHLQLYDPVLPDC 103 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~----------~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~ 103 (240)
..-..+++.|..+...++.+.|+++|+++- ..+|. +...|...|......|+.+.|+.+|
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 345678888999999999999999999852 22332 4567788899999999999999999
Q ss_pred HHHHhcC---------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCchHH-HHHh-
Q psy17412 104 DKALRLD---------------------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK------YPTRRKL-AIEQ- 154 (240)
Q Consensus 104 ~~~~~~~---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~-~~~~- 154 (240)
..+-... ..+..+.|.+|..|...|++.+|+..|.++-.. ..++... .+..
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8875321 234457899999999999999999988876433 2222110 0000
Q ss_pred -ccCchHHHHHHH--------------HHHHHhcccCchhhHHHHH-----h-----hcChh-hHHHHHHHHHHHHHcCC
Q psy17412 155 -VRDSPVLYTNRA--------------LTLLHLQLYDPVLPDCDKA-----L-----RLDED-NMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 155 -~~~~~~~~~~la--------------~~~~~~~~~~~A~~~~~~~-----l-----~~~~~-~~~~~~~la~~~~~~g~ 208 (240)
.-..+.-....| .+|.+.|.+.+|++..=+. + .++|+ ++..+..-+..+....+
T Consensus 1016 al~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 000011112222 2333444444444322110 1 12333 57778888889999999
Q ss_pred HHHHHHHHHHH
Q psy17412 209 REEAKEYIREL 219 (240)
Q Consensus 209 ~~~A~~~~~~~ 219 (240)
|++|...+-.+
T Consensus 1096 yekAV~lL~~a 1106 (1416)
T KOG3617|consen 1096 YEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHHHHH
Confidence 99998765443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.8e-05 Score=35.89 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDS 79 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 79 (240)
+++.+|.++...|++++|++.|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777788887777777777763
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0059 Score=48.16 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=109.0
Q ss_pred HhCCHHHHHHHHHHHHHhcCC------C--------hHHHHHHHHHHHHccCcCchHHHHHHHHhcC---cc-------c
Q psy17412 58 QSGQYEAALVQYDKAIEQVRD------S--------PVLYTNRALTLLHLQLYDPVLPDCDKALRLD---ED-------N 113 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~~~------~--------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-------~ 113 (240)
-.|-+++|.++-++++..... . ...+-.++.|-.-.|++.+|++....+.+.. |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 456778888888887765221 1 1234456777788899999988887776543 33 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-- 191 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-- 191 (240)
+...+.+|......+.++.|...|..+.+......-. +-.-.++|.+|.+.|+-+.-.+.++. +.|.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~--------a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt 435 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ--------AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNT 435 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH--------HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCC
Confidence 4577888888888899999999999998876543222 34467888899987765443333333 3332
Q ss_pred --------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 --------NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
...+++..|...+.++++.||...+.+.++..
T Consensus 436 ~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 436 NSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 14567788888889999999999999998876
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00043 Score=54.34 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCC-HH
Q psy17412 132 EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ-RE 210 (240)
Q Consensus 132 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~ 210 (240)
.-...|+.++...+.+... |........+.+.+.+--..|.+++..+|++++.|..-|...+..+. .+
T Consensus 89 rIv~lyr~at~rf~~D~~l-----------W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~ 157 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKL-----------WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIE 157 (568)
T ss_pred HHHHHHHHHHHhcCCCHHH-----------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchH
Confidence 3456778888888877776 88887777777779999999999999999999999999998888776 89
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 211 EAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 211 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
.|...+.++++.+|++|.+|..+-++
T Consensus 158 saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 158 SARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 99999999999999999999887664
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0083 Score=47.36 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=122.6
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHh---cCC-------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc-c--H
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQ---VRD-------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-N--M 114 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~--~ 114 (240)
.+..+..+-.-.|++.+|++......+. .|. .+.+.+.+|......+.++.|...|..+.++-.. + .
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445556667789999999988887765 344 2446777888888888999999999999876532 2 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh---
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--- 191 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--- 191 (240)
-+..++|.+|...|+-+.-.+.+ -.+.|.+... .........+++..|...+..+++.+|...+.+.++....
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~l---d~i~p~nt~s-~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKAL---DLIGPLNTNS-LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHH---HhcCCCCCCc-chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 35567899999987755433333 3355553221 1111223456888888999999999999999999987522
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 192 ---NMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 192 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..-.+..+|.+..-.|+..++.+..+-++....
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 133467789999999999999988877776543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=50.88 Aligned_cols=149 Identities=12% Similarity=0.035 Sum_probs=98.0
Q ss_pred hHHHHHHHhHhHHHH---hCCHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHc---------cCcCchHHHHHHHHhcC
Q psy17412 44 DIADHFKANGNKAFQ---SGQYEAALVQYDKAI-EQVRDSPVLYTNRALTLLHL---------QLYDPVLPDCDKALRLD 110 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~ 110 (240)
.....-+..|.++.+ .|+.++|++.+..++ ...+.+++.+...|.+|-.. ...++|+..|.++.+.+
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 355666778888888 899999999999954 45667788999999888542 23678999999999998
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLV-EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
|+. -.=.+++.++...|.-.+....+++.. +++.--..........+...+..++.+..-.|++++|.+.++++++..
T Consensus 257 ~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 257 PDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 654 334556666666665444333333322 111000000000011233445666777888999999999999999987
Q ss_pred hhhH
Q psy17412 190 EDNM 193 (240)
Q Consensus 190 ~~~~ 193 (240)
|...
T Consensus 336 ~~~W 339 (374)
T PF13281_consen 336 PPAW 339 (374)
T ss_pred Ccch
Confidence 7644
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0025 Score=48.85 Aligned_cols=153 Identities=8% Similarity=-0.064 Sum_probs=110.7
Q ss_pred HHHHhchhHHHHHHHhHhHHHHhC------------CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHH
Q psy17412 37 EERKARQDIADHFKANGNKAFQSG------------QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 104 (240)
Q Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 104 (240)
+....+|.+.+.|..+...--..- -.+.-+.+|++|++.+|++...+..+-.+..+..+.++...-++
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345678888888888776543332 24677899999999999999998888888888888888889999
Q ss_pred HHHhcCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCchHH-------HHHhccCchHHHHHHHHHHHHhcc
Q psy17412 105 KALRLDEDNMKAHLYKARAMHS---LGQREEAKEYVRQLVEKYPTRRKL-------AIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
+++..+|++...|...-..... ...++.....|.+++..-...... ..........+...+.....+.|.
T Consensus 90 ~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~ 169 (321)
T PF08424_consen 90 ELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGY 169 (321)
T ss_pred HHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCc
Confidence 9999999998877665443332 346778888888887642221110 011111224556777777888999
Q ss_pred cCchhhHHHHHhhcC
Q psy17412 175 YDPVLPDCDKALRLD 189 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~ 189 (240)
.+.|+..++-.++++
T Consensus 170 ~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 170 TERAVALWQALLEFN 184 (321)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998875
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00087 Score=41.85 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=74.4
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCc-----------CchHHHHHHHHhcCcccHHHH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSP---VLYTNRALTLLHLQLY-----------DPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~ 117 (240)
++..++..||+-+|+++.+..+...+++. ..+..-|.++..+..- -.+++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778999999999999999999887765 5666778877665422 247888999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
+.+|.-+....-|+++..--++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998877777788888888887765
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=37.82 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
+.++.+|..+.++|+|++|..+.+.+++..|++.++...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 356777888888888888888888888888888776544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00039 Score=51.37 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
....++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4577888899999999999999999999999999999999999999999999999999999999999876543
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0052 Score=50.81 Aligned_cols=169 Identities=17% Similarity=0.013 Sum_probs=109.0
Q ss_pred HHHhchhHHHHHHHhHhHHHHh-----CCHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHcc-----CcCchHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQS-----GQYEAALVQYDKAIEQ-----VRDSPVLYTNRALTLLHLQ-----LYDPVLPD 102 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~-----~~~~A~~~ 102 (240)
+......+..+...+|.++..- .|.+.|+.+|+.+... ....+.+.+.+|.+|.+.. +++.|+.+
T Consensus 236 ~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~ 315 (552)
T KOG1550|consen 236 REAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKL 315 (552)
T ss_pred HHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHH
Confidence 3344555666777777776643 5788888888888661 1124556777888887743 45568888
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh----ccc
Q psy17412 103 CDKALRLDEDNMKAHLYKARAMHSLG---QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL----QLY 175 (240)
Q Consensus 103 ~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~ 175 (240)
+.++.... ++.+.+.+|.++..-. +...|..+|..+.+..- .. ..+.+|.||..- .+.
T Consensus 316 ~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~-----------A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 316 YTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--IL-----------AIYRLALCYELGLGVERNL 380 (552)
T ss_pred HHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hH-----------HHHHHHHHHHhCCCcCCCH
Confidence 87777653 4567778888877655 56678888887776543 22 277777777653 356
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNL-GQREEAKEYIRELVEKY 223 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~ 223 (240)
..|..+++++.+.. .+.+...++..+..- ++++.+.-.+.......
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 67788888887766 445555555554332 77777766665554443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.013 Score=44.26 Aligned_cols=162 Identities=15% Similarity=-0.051 Sum_probs=115.4
Q ss_pred HHHHHhHhHHHH----hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCcCchHHHHHHHHhcCccc-HHHH
Q psy17412 47 DHFKANGNKAFQ----SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDEDN-MKAH 117 (240)
Q Consensus 47 ~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~-~~~~ 117 (240)
.....++..+.. ..+..+|..+|..+.+ ...+...+.+|.+|.. ..+..+|..+|.++....-.. ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 456666666654 3467889999885443 3567788889998887 448889999999998775333 3447
Q ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh----cccCchhhHHHHHh
Q psy17412 118 LYKARAMHSLG-------QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL----QLYDPVLPDCDKAL 186 (240)
Q Consensus 118 ~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l 186 (240)
+.+|.++..-. +...|...|.++-... ++. ....+|.+|..- .++.+|..+|.++-
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~-----------a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD-----------AQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH-----------HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 77787776641 2336888888877765 333 388888877653 47789999999998
Q ss_pred hcChhhHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCc
Q psy17412 187 RLDEDNMKAHLYKARAMHNLG---------------QREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 187 ~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~~~~~~p~~ 226 (240)
+... ....+.++ ++...| +...|..++..+....+..
T Consensus 219 ~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 219 EQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 8776 77778888 666655 7788888888877665543
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.021 Score=45.84 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcc---CcCchHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRD-SPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNM-KAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~ 136 (240)
-+++..+|++++...-. +...++.++..-...- +++...+.+++++.....++ -++..+-..-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 67788888888775332 3334444444333322 36677777888776543332 2444455555555566677777
Q ss_pred HHHHHHcCCCchHHHHHhccCchHHHHHHHH-HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 137 VRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL-TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215 (240)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 215 (240)
|.++-+........ +..-|. -|...++..-|...|+-.++..++.+..-......+..+++-..|...
T Consensus 389 F~kaR~~~r~~hhV-----------fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~L 457 (656)
T KOG1914|consen 389 FKKAREDKRTRHHV-----------FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARAL 457 (656)
T ss_pred HHHHhhccCCcchh-----------hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHH
Confidence 77776543332222 333332 244567888888888888888888887777777788888888888888
Q ss_pred HHHHHHh
Q psy17412 216 IRELVEK 222 (240)
Q Consensus 216 ~~~~~~~ 222 (240)
|++++..
T Consensus 458 FEr~l~s 464 (656)
T KOG1914|consen 458 FERVLTS 464 (656)
T ss_pred HHHHHhc
Confidence 8888876
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0022 Score=40.47 Aligned_cols=108 Identities=28% Similarity=0.245 Sum_probs=73.3
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCchHH-HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc---
Q psy17412 115 KAHLYKARA--MHSLGQREEAKEYVRQLVEKYPTRRKL-AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--- 188 (240)
Q Consensus 115 ~~~~~la~~--~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--- 188 (240)
.+|..|+.. .+.-|-|++|...++++++....-|.. +.....-++-.+..++..+..+|+|++++....+++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 345555443 455688999999999999875543321 12222334566888999999999999988777777643
Q ss_pred ----Chhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 189 ----DEDN----MKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 189 ----~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+.+. ..+.+..+..+..+|+.++|+..|+.+-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3333 445578899999999999999999988754
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0037 Score=48.57 Aligned_cols=172 Identities=14% Similarity=0.030 Sum_probs=101.7
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc--
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-- 113 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 113 (240)
..-....|-+.+++..++.++..+|+...|.+++++|+-.........+..-..-...|.-. +. -..+.|
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r-----L~---~~~~eNR~ 101 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR-----LD---YRRPENRQ 101 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc-----cC---CccccchH
Confidence 33456778888888888888888888888888888887543221111110000000000000 00 001222
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh-
Q psy17412 114 -MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT-RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE- 190 (240)
Q Consensus 114 -~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~- 190 (240)
..+.+.....+.+.|-+..|.++.+-.+.++|. |+-. +...+-....+.++|+--+..++.......
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g----------~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG----------VLLFIDYYALRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch----------hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh
Confidence 234555666777888888888888888888887 4433 244444444556666655555554433111
Q ss_pred h----hHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q psy17412 191 D----NMKAHLYKARAMHNLGQR---------------EEAKEYIRELVEKYPT 225 (240)
Q Consensus 191 ~----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~~~~~~p~ 225 (240)
+ -+..-+..+.++..+++. ++|...+.+++...|.
T Consensus 172 ~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 172 NWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1 234567777777778777 8899999999888774
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0045 Score=44.91 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG-QREEAKEYVR 138 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~ 138 (240)
.+|.++..+|+..+..+..+ ..|+.....++.++|.+..+|...-.++..++ +..+-+.++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566666666555554444 45666777889999999888887777776654 6778889999
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC-chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD-PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
.+++-+|.+... |...-.+....|++. .-++..+.++..+..+-.+|...-.+....+.++.-+.+..
T Consensus 103 eI~e~npKNYQv-----------WHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 103 EIIEDNPKNYQV-----------WHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHhCccchhH-----------HHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999888 888888888888887 78899999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHH
Q psy17412 218 ELVEKYPTRRKLVE 231 (240)
Q Consensus 218 ~~~~~~p~~~~~~~ 231 (240)
+.++.+-.+..+|.
T Consensus 172 ~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 172 ELLEEDIRNNSAWN 185 (318)
T ss_pred HHHHHhhhccchhh
Confidence 99988876655554
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.02 Score=47.47 Aligned_cols=148 Identities=15% Similarity=-0.024 Sum_probs=109.5
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-----cCcCchHHHHHHHHhc-----CcccHHHHHHHHHHHHHcC
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-----QLYDPVLPDCDKALRL-----DEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~ 128 (240)
.++...|..+++.+.+. .+......+|.||..- .+.+.|+.+++.+... ...++.+.+.+|.+|.+-.
T Consensus 225 ~~~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 225 SGELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred chhhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 34567788888887766 4566777788888764 5788899999888761 1124567888888888743
Q ss_pred -----CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc---ccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 129 -----QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 129 -----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
++..|..++.++-.....+. .+.+|.++.... ++..|.++|..+.+. .+..+.+.++
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a-------------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la 367 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDA-------------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLA 367 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchH-------------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHH
Confidence 67789999999888765433 677888777655 567899999988765 3577888888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhC
Q psy17412 201 RAMHN----LGQREEAKEYIRELVEKY 223 (240)
Q Consensus 201 ~~~~~----~g~~~~A~~~~~~~~~~~ 223 (240)
.++.. .-+...|..++.++....
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 87764 347788999999988887
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=35.38 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
++..+|.++..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888888888888888888885543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0051 Score=47.78 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=95.9
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHccCcCchHHHHHHHHhc-Cc-----
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD----SPVLYTNRALTLLHLQLYDPVLPDCDKALRL-DE----- 111 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~----- 111 (240)
....+..|...+....+.|+++.|...+.++...++. .+.+....+......|+..+|+..++..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4467788999999999999999999999999886522 4678888899999999999999999888761 10
Q ss_pred ----------------------------ccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCchHHHHHhccC
Q psy17412 112 ----------------------------DNMKAHLYKARAMHSL------GQREEAKEYVRQLVEKYPTRRKLAIEQVRD 157 (240)
Q Consensus 112 ----------------------------~~~~~~~~la~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 157 (240)
....++..+|...... +..+++...|.++++..|+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~------- 294 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA------- 294 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHH-------
Confidence 1134666777777777 88899999999999999998777
Q ss_pred chHHHHHHHHHHHHh
Q psy17412 158 SPVLYTNRALTLLHL 172 (240)
Q Consensus 158 ~~~~~~~la~~~~~~ 172 (240)
+...|..+...
T Consensus 295 ----~~~~a~~~~~~ 305 (352)
T PF02259_consen 295 ----WHSWALFNDKL 305 (352)
T ss_pred ----HHHHHHHHHHH
Confidence 77777766554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00059 Score=54.06 Aligned_cols=108 Identities=31% Similarity=0.393 Sum_probs=94.9
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc---CcCchHHHHHHHHhcCcccHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
+-+..++.....|+-.+..+.+..++..|.++++..|+...++.+.+.++++.+ +.-.|+.....+++++|....++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 455677778888888888889999999999999999999999999999998764 55567788888999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
+.++.++..++++.+|+.+...+....|.+.
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999999998888888543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=48.80 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=61.2
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
.+.+.++-..+.+.++++.|+.+.+..+...|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.....
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34555666777888888888888888888888888888888888888888888888888888888888776544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=34.69 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=18.1
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+|.++...|+|++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777777777777777775543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0032 Score=42.31 Aligned_cols=100 Identities=15% Similarity=0.028 Sum_probs=79.9
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
....+..........++.+.+...+...--+.|..+.+-..-|.++...|++.+|+..++.+....|..+.+.-.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34566677777788889999999999888899999999999999999999999999999999888888888888899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCC
Q psy17412 125 HSLGQREEAKEYVRQLVEKYP 145 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~ 145 (240)
..+|+.+= ..+-.++++..+
T Consensus 89 ~~~~D~~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPSW-RRYADEVLESGA 108 (160)
T ss_pred HHcCChHH-HHHHHHHHhcCC
Confidence 88887542 222334444443
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0065 Score=38.45 Aligned_cols=93 Identities=32% Similarity=0.436 Sum_probs=70.5
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCC------------ChHHHHHHHHHHHHccCcCchHHHHHHHHh-------cCc
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRD------------SPVLYTNRALTLLHLQLYDPVLPDCDKALR-------LDE 111 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~ 111 (240)
..|...+..|-|++|...+.++++.... +..++..++..+..+|+|++++....+++. ++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 3455567789999999999999987432 255788899999999999998888888774 333
Q ss_pred cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 112 DN----MKAHLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 112 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
+. ..+-+..+..+...|+.++|+..|+.+-+.
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 335567889999999999999999988664
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.02 Score=49.50 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcC--hh-----------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLD--ED-----------------------NMKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~-----------------------~~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
+..++..+..+|+|..|.....++-... .. +++-+-.+...|...|-+++-+..+
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 7778888888999998888777763321 00 1233456677788899999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHhhh
Q psy17412 217 RELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 217 ~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.++.+...+......++.++.
T Consensus 1303 Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1303 EAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HhhhchhHHHHHHHHHHHHHHH
Confidence 9998887777666666766654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.03 Score=42.38 Aligned_cols=165 Identities=16% Similarity=0.017 Sum_probs=120.4
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc----cCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH-
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL----QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS- 126 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~- 126 (240)
.+......+++..+...+..+-.. .++.....++.+|..- .+..+|..+|+.+.. ..++.+.+.+|.++..
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANG 122 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcC
Confidence 344445678899999999888763 2346777888888764 356778888885554 4567788999999887
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc-------ccCchhhHHHHHhhcChhhHHHH
Q psy17412 127 ---LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ-------LYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 127 ---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
..+..+|..+|+++.+...... ......+|.++..-. +...|+..|.++-... ++.+.
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~a----------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~ 190 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVEA----------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQ 190 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChhH----------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHH
Confidence 4599999999999999865542 112566676666541 2336888888877655 67788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 197 LYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 197 ~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
..+|.+|.. ..++.+|..+|.++-+... ......++
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 888887755 3488999999999998876 66666665
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.016 Score=46.43 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccC--------------cCchHHHHHHHHhcCc-ccHHHHHHHHHHHHHcC---
Q psy17412 67 VQYDKAIEQVRDSPVLYTNRALTLLHLQL--------------YDPVLPDCDKALRLDE-DNMKAHLYKARAMHSLG--- 128 (240)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~--- 128 (240)
=.|++++..-+..+.+|+..+......++ -+++..++++++.... .+...++.++..-...-
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 34677777777778888776665555544 4566667777664332 23333444443332222
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH-HHHcC
Q psy17412 129 QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA-MHNLG 207 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~~g 207 (240)
+++.....+++++.+...++.. ++..+-..-.+..-...|...|.++-+.......++..-|.+ |...+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tL----------v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTL----------VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK 415 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCce----------ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC
Confidence 3666777788887765554433 355555555566667788889998876544433455554444 56689
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 208 QREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+..-|...|+-.++..++++.....+...
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDF 444 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 99999999999999999998876665543
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0037 Score=49.36 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy17412 63 EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ-REEAKEYVRQLV 141 (240)
Q Consensus 63 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~ 141 (240)
..-...|+.+....+.++..|........+.+.+.+-...|.+++..+|++++.|..-|.-.+.-+. .+.|...+.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3556789999999999999999888777778889999999999999999999999999987777665 999999999999
Q ss_pred HcCCCchHH
Q psy17412 142 EKYPTRRKL 150 (240)
Q Consensus 142 ~~~~~~~~~ 150 (240)
+.+|+++..
T Consensus 168 R~npdsp~L 176 (568)
T KOG2396|consen 168 RFNPDSPKL 176 (568)
T ss_pred hcCCCChHH
Confidence 999999887
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.017 Score=38.88 Aligned_cols=84 Identities=19% Similarity=0.029 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchH
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (240)
..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+....|..+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~---------- 80 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYA---------- 80 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHH----------
Confidence 3455555666667777777777777777777777777777778888888888888887777777666555
Q ss_pred HHHHHHHHHHHhccc
Q psy17412 161 LYTNRALTLLHLQLY 175 (240)
Q Consensus 161 ~~~~la~~~~~~~~~ 175 (240)
.-.++.|+...|+.
T Consensus 81 -kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 81 -KALLALCLYALGDP 94 (160)
T ss_pred -HHHHHHHHHHcCCh
Confidence 66677777766654
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0025 Score=55.80 Aligned_cols=176 Identities=14% Similarity=0.047 Sum_probs=130.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHH------HHHHHH-HhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC------
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALV------QYDKAI-EQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------ 110 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~------~~~~a~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 110 (240)
..+......|......|.+.+|.+ ++.... ...|+...++..++.++...|++++|+..-.++.-..
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345666778888888888888888 444332 2367778899999999999999999999988876332
Q ss_pred --cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 111 --EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 111 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
|+....+.+++...+..++...|...+.++..+.--... ...|....+..+++.++...++++.|+.+++.+++.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g---e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG---EDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC---CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 566778889999999999999999999988775211100 012233555788898988999999999999999886
Q ss_pred Chh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 189 DED--------NMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 189 ~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
..+ ....+..+++....+|++..|....+....+
T Consensus 1087 ~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1087 NKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 432 3455677788888888888877776665543
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00095 Score=49.45 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
.+..-...|.-....|+.++|..+|..++.+.|+++.++..+|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444455666778899999999999999999999999999999999888999999999999999999999888776543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0026 Score=38.71 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh--HHHHHHHHHHHHHcCCHH
Q psy17412 133 AKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN--MKAHLYKARAMHNLGQRE 210 (240)
Q Consensus 133 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~ 210 (240)
.+..+++.+..+|++... .+.+|..+...|++++|++.+..+++.++++ ..+...+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~a-----------r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDA-----------RYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHH-----------HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 345667777777877766 8888888888888888888888888887764 455555556666666654
Q ss_pred HHHHHHHH
Q psy17412 211 EAKEYIRE 218 (240)
Q Consensus 211 ~A~~~~~~ 218 (240)
.....|++
T Consensus 76 plv~~~RR 83 (90)
T PF14561_consen 76 PLVSEYRR 83 (90)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 44444433
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0031 Score=50.88 Aligned_cols=114 Identities=16% Similarity=0.059 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy17412 68 QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK--AHLYKARAMHSLGQREEAKEYVRQLVEKYP 145 (240)
Q Consensus 68 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 145 (240)
+...+++..|.+...+..-+..+...|+..+|..++..++-..|...+ +...+|.++.++|...+|--.+..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 344556666666555555555556678888999999888877765433 677888889999988888888877777666
Q ss_pred CchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 146 TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
....- ++.++.++..++++......|..+.+.+|..
T Consensus 281 ~~t~n-----------~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 281 FFTSN-----------YYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred ccccc-----------ceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 55444 7888888888888888888888888887764
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00083 Score=49.74 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.+.+.-..+.|+.++|...|+.++.+.|++++++..+|.......+.-+|-.+|-+++.++|.+.++..+-.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3444445577999999999999999999999999999999999999999999999999999999888766443
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0041 Score=50.62 Aligned_cols=98 Identities=13% Similarity=0.197 Sum_probs=86.2
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..+.+.|...++..+|..+++.|...+...|.+ ......++.||..+.+.+.|.++++.|-+.+|.++-.....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345667888899999999999999999987765 55778899999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
..+....|+-++|+.+........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 899999999999999988876653
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0026 Score=34.28 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=18.3
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 83 (240)
.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344555555555555555555555555555554443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.011 Score=44.42 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=71.2
Q ss_pred HccCcCchHHHHHHHHhcC----ccc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC----chHHHHHhccCc
Q psy17412 92 HLQLYDPVLPDCDKALRLD----EDN----MKAHLYKARAMHSLG-QREEAKEYVRQLVEKYPT----RRKLAIEQVRDS 158 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~----~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~ 158 (240)
..|+.+.|..++.|+-... |+. ...+++.|......+ ++++|..++++++++-+. .... .......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~-~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS-PDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC-CcHHHHH
Confidence 3445555555555443222 221 235566666666666 777777777777766211 1000 0000112
Q ss_pred hHHHHHHHHHHHHhcccC---chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 159 PVLYTNRALTLLHLQLYD---PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..++..++.++...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+.+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 345666777777766554 344444444455566666665555555557777777777777766543
|
It is also involved in sporulation []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00067 Score=31.91 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.++..+|.++..+|++++|...++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34666777777777777777777777776654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0021 Score=51.16 Aligned_cols=102 Identities=25% Similarity=0.218 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh---cccCchhhHHHHHhhcCh
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL---QLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~l~~~~ 190 (240)
.+....-|.-.+..+.+..++..|.+++...|..... +.+.+.++++. |+.-.|+.....+++++|
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~-----------l~nraa~lmkRkW~~d~~~AlrDch~Alrln~ 442 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYL-----------LENRAAALMKRKWRGDSYLALRDCHVALRLNP 442 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHH-----------HHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence 3334444444455566778888888888888887666 88888888875 455567777888899999
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
....+++.+++++..++++.+|+.+...+....|.+
T Consensus 443 s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 999999999999999999999999888777777754
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.043 Score=44.04 Aligned_cols=188 Identities=16% Similarity=0.055 Sum_probs=121.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVR--DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
.....|+.+.-.+..+..+...|+.+.|+..+...+...- -...+++.+|.++.-..+|..|...+......+.-+--
T Consensus 259 ~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a 338 (546)
T KOG3783|consen 259 YRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHA 338 (546)
T ss_pred HHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHH
Confidence 3455677777888888888888888888888888777110 12456778899999999999999988888766532222
Q ss_pred HHHHHH-HHHHH--------cCCHHHHHHHHHHH---HHcCCCchHH---------------------------------
Q psy17412 116 AHLYKA-RAMHS--------LGQREEAKEYVRQL---VEKYPTRRKL--------------------------------- 150 (240)
Q Consensus 116 ~~~~la-~~~~~--------~~~~~~A~~~~~~a---~~~~~~~~~~--------------------------------- 150 (240)
.|..++ .|++. .|+-++|-.+++.. +...|.+...
T Consensus 339 ~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~ 418 (546)
T KOG3783|consen 339 FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYF 418 (546)
T ss_pred HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHH
Confidence 222233 33321 22444433333322 2221111100
Q ss_pred ----------------------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh---h----hHHHHHHHHH
Q psy17412 151 ----------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE---D----NMKAHLYKAR 201 (240)
Q Consensus 151 ----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~----~~~~~~~la~ 201 (240)
.+.+..+..-.+..+|.++..+|+-..|..++...++... + .|.+++.+|.
T Consensus 419 Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~ 498 (546)
T KOG3783|consen 419 WNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELAL 498 (546)
T ss_pred HhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 0000011123467788999999999999999988874321 1 2678999999
Q ss_pred HHHHcCC-HHHHHHHHHHHHHhCCC
Q psy17412 202 AMHNLGQ-REEAKEYIRELVEKYPT 225 (240)
Q Consensus 202 ~~~~~g~-~~~A~~~~~~~~~~~p~ 225 (240)
.++.+|. ..++.+++.++-.-..+
T Consensus 499 l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 499 LYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHhcccChHHHHHHHHHHHhhccc
Confidence 9999998 99999999999877644
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.01 Score=37.20 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=65.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc-----------cCchhhHHHHHhhc
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL-----------YDPVLPDCDKALRL 188 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~~l~~ 188 (240)
++.-++..|++-+|++.++..+...+++... ...+..-|.++.++.. .-.+++.+.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~--------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS--------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch--------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence 3556777788888888888888777766532 1224444555544321 23578888999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 189 DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 189 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.|..+..++.+|.-+-...-|+++..-.++++..
T Consensus 74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 9998888888887766666677777777777754
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.076 Score=43.72 Aligned_cols=103 Identities=10% Similarity=0.088 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
++.+-|.-.++..+|..+++.|...+...|.+... ...+....+++.||..+.+.+.|.+++..+-+.+|.++-.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~-----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS-----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 45667788899999999999999999988875432 1225668889999999999999999999999999999998
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
...+..+....|+-++|+..........
T Consensus 431 q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 431 QLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 8899999999999999999988877553
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00075 Score=31.73 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
++..+|.++..+|++++|..+++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777777777777777766654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0099 Score=42.61 Aligned_cols=92 Identities=17% Similarity=0.100 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHHHHc----CCCchHHHHHhccCchHHHHHHHHHHHHhcccC-------chhhHHHHHhhcCh-----
Q psy17412 127 LGQREEAKEYVRQLVEK----YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD-------PVLPDCDKALRLDE----- 190 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-------~A~~~~~~~l~~~~----- 190 (240)
...+++|+..|.-|+-. ...... .+.++..+|++|...|+-+ .|+..|.++++...
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~--------~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~ 161 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSK--------KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG 161 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 34566777777666542 112212 2456888899988888844 45555555554332
Q ss_pred -hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 191 -DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 191 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+...+.+.+|.+..+.|++++|..+|.+++.....+
T Consensus 162 ~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 162 MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 236788999999999999999999999999765443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.011 Score=41.10 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh---
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--- 191 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--- 191 (240)
.++..+|..|.+.|+.++|++.|.++.+........ .+.++.+..+....+++.....++.++-..-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~--------id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK--------IDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 456667777777777777777777766654433222 344666666666677777776666666443211
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 ---NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
........|..++..++|.+|-..|-.+..-.
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 12234556666777888888888876665433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.038 Score=43.49 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHHHHhHhHHHHhCC-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHH--HHHHHHh---------cCc-
Q psy17412 45 IADHFKANGNKAFQSGQ-YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP--DCDKALR---------LDE- 111 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~~~~---------~~~- 111 (240)
.+..+...|.-+.+.|. -++|+++++.+++..|.+..+.... ..+-...|.+|+. .+.+.+. +.|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 34455566666777776 6677777777777776665433211 1111111222211 1111111 111
Q ss_pred --ccHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 112 --DNMKAHLYK--ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 112 --~~~~~~~~l--a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
.+.+.-..+ |..++..|+|.++..+-.-..++.| ++.+ +..+|.|.+...+|++|..++..
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~-----------~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQA-----------YRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHH-----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence 111222222 3345566666666666666666666 3444 66666666666666666666644
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.015 Score=48.13 Aligned_cols=157 Identities=14% Similarity=0.039 Sum_probs=85.4
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---------PVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
.....++..+++.|..+|......-.++.|...|-+.-.. +.- ..--...+.+-..-|++++|.+.|-.+
T Consensus 682 A~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 682 AIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 3344566778899999999988888888888777665322 110 000012233333345555555544322
Q ss_pred Hh----------------------c---C---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc
Q psy17412 107 LR----------------------L---D---EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS 158 (240)
Q Consensus 107 ~~----------------------~---~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (240)
-+ . + ..-..++..+|..+..+..|++|.++|.+.-.
T Consensus 761 drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------------- 824 (1189)
T KOG2041|consen 761 DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------------- 824 (1189)
T ss_pred chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------
Confidence 11 1 0 11135788889999999999999888876532
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
.-+...+++...+|++ ++.....-|++...+-.+|..+...|.-++|.+.|
T Consensus 825 ---~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 825 ---TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ---hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 3344455555555443 22222233444444444454444444444444433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0061 Score=37.07 Aligned_cols=47 Identities=21% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc
Q psy17412 66 LVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112 (240)
Q Consensus 66 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 112 (240)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 33445555555555555555666666666666665555555555543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=42.46 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=67.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHhc----CC---ChHHHHHHHHHHHHccCcCc-------hHHHHHHHHhcC--c----ccH
Q psy17412 55 KAFQSGQYEAALVQYDKAIEQV----RD---SPVLYTNRALTLLHLQLYDP-------VLPDCDKALRLD--E----DNM 114 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~~~----~~---~~~~~~~la~~~~~~~~~~~-------A~~~~~~~~~~~--~----~~~ 114 (240)
-+.....+++|++.|.-|+-.. .+ -+.++..+|++|...|+.+. |++.|.++++.. | +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 3344567889999888877642 11 15678889999999998554 555555555433 1 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
.+.+.+|.+..+.|++++|..+|.+++.....+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999865443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.045 Score=38.05 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=79.6
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc--cH--
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NM-- 114 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 114 (240)
....-..+..+|..|.+.|++++|++.|.++.+..... ...+..+..+.+..+++.....++.++-..-.. +.
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 34456788999999999999999999999988765433 457778888889999999999999888755322 22
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 115 --KAHLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 115 --~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
......|..+...++|.+|...|-.+..-.
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 234556777888899999999987765444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.017 Score=37.54 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=60.2
Q ss_pred hhHHHHHHHhHhHHHHhC---CHHHHHHHHHHHHH-hcCCC-hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 43 QDIADHFKANGNKAFQSG---QYEAALVQYDKAIE-QVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~-~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.-..+..++++.++.... +.++.+.+++..++ -.|.. ..+.+.++..+++.++|+.++.+.+..++..|++.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345677788888888655 46678899998886 44433 56778899999999999999999999999999887765
Q ss_pred HH
Q psy17412 118 LY 119 (240)
Q Consensus 118 ~~ 119 (240)
-.
T Consensus 109 ~L 110 (149)
T KOG3364|consen 109 EL 110 (149)
T ss_pred HH
Confidence 43
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00099 Score=49.38 Aligned_cols=80 Identities=11% Similarity=0.202 Sum_probs=68.4
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY-KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.++.+|...+..-.+.|-|.+--..|..+++.+|.+++.|.. -+.-+...++.+.+...|.++++.+|++|.+|..+-+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 334448888887778888889999999999999999999987 4445778999999999999999999999999988765
Q ss_pred h
Q psy17412 236 A 236 (240)
Q Consensus 236 ~ 236 (240)
+
T Consensus 185 ~ 185 (435)
T COG5191 185 M 185 (435)
T ss_pred H
Confidence 4
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=45.84 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=66.5
Q ss_pred HhHHHHhCCHHHHHHHHHHHHHhc--------CCC----------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH
Q psy17412 53 GNKAFQSGQYEAALVQYDKAIEQV--------RDS----------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 53 a~~~~~~~~~~~A~~~~~~a~~~~--------~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 114 (240)
|...+++++|..|..-|..++++. |.. ..+-..+..||+.+++.+.|+....+.|.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 444555566666665555555542 111 22455789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
.-+...|.++..+.+|.+|...+--+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987665444
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0042 Score=40.23 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhc---ccCchhhHHHHHhh-cChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 161 LYTNRALTLLHLQ---LYDPVLPDCDKALR-LDED-NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 161 ~~~~la~~~~~~~---~~~~A~~~~~~~l~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
..+++++++.+.. +..+.+.+++..++ -.|. .-+..+.++..+.++|+|++++.+....++..|++.++..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3788999888764 45678889999986 4554 4567889999999999999999999999999999988754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0011 Score=46.99 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
...+.++.+.|.+.|.+++.+.|.+...|+.+|....+.|+.+.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445678899999999999999999999999999999999999999999999999999863
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.049 Score=36.16 Aligned_cols=84 Identities=14% Similarity=-0.039 Sum_probs=64.1
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 127 (240)
.+..........++.+++...+...--+.|+.+.+-..-|.++...|++.+|+..++...+..+..+.+.-.++.|+.-+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444445555788888888888777788888888888888888888888888888888877777777777778887777
Q ss_pred CCHH
Q psy17412 128 GQRE 131 (240)
Q Consensus 128 ~~~~ 131 (240)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.08 Score=41.79 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=100.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-----LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.-.+...|.++.+++++++|.+.|.+..+...+++. ++.++-.--+-+++.+.-...+...-+..|..+......
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 345667899999999999999999999887666533 333333333445566665555555556678888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
|...++.+.+.+|++.+......-...... .+...-.+...-...+.++...|++.++...+++.+..
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999999887766542221111 12222223334455688999999999999999988754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.064 Score=43.58 Aligned_cols=133 Identities=15% Similarity=-0.009 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCChHHHHH--HHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q psy17412 65 ALVQYDKAIEQVRDSPVLYTN--RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQ-LV 141 (240)
Q Consensus 65 A~~~~~~a~~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-a~ 141 (240)
++..+...+..+|.++..+.. +...+...+....+.-.+...+..+|++..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666666677777665332 466666677777788888888888888888888888877777766666655555 67
Q ss_pred HcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 142 EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
...|.+... ....+..+- ++.....+|+..++...+.++....|.++.+...+...
T Consensus 130 ~~~~~~~~~----~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEF----LGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHH----HhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777776655 111112222 57777777888888888888888888876665555444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=50.51 Aligned_cols=124 Identities=21% Similarity=0.254 Sum_probs=56.2
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 136 (240)
...|+.-.|-.-...++...|..+......+.++..+|+|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34455555555555555555555554445555555555555555444333222222222333333444445555555555
Q ss_pred HHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 137 VRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
-+-.+.-.-++++. ...-+..--.+|-++++.-++++.+.++|.
T Consensus 380 a~~~l~~eie~~ei-----------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 380 AEMMLSNEIEDEEV-----------LTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhccccCChhh-----------eeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 44444433333332 222233333444555555555555555443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0016 Score=46.22 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=33.3
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 113 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 113 (240)
....++.+.|.+.|.+++...|+....|+.+|....+.|+++.|...|.+.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555555555555555555555555555555555555555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.021 Score=37.87 Aligned_cols=81 Identities=14% Similarity=-0.009 Sum_probs=50.9
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
+......-...++.+++...+...--+.|+.+.....-|.++...|+|.+|+..++...+-.+..+.. .
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~-----------k 81 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG-----------K 81 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH-----------H
Confidence 33444444556666666666666666667777766667777777777777777777766665554443 5
Q ss_pred HHHHHHHHHhcc
Q psy17412 163 TNRALTLLHLQL 174 (240)
Q Consensus 163 ~~la~~~~~~~~ 174 (240)
-.++.|+.-+|+
T Consensus 82 AL~A~CL~al~D 93 (153)
T TIGR02561 82 ALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCC
Confidence 555566655554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.051 Score=42.41 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=75.1
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CchH---------HH----HHhccCchHHHHHHHHH
Q psy17412 107 LRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP-----TRRK---------LA----IEQVRDSPVLYTNRALT 168 (240)
Q Consensus 107 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~---------~~----~~~~~~~~~~~~~la~~ 168 (240)
++.+|-+.+.+..++.++..+|+.+.|.+.+++|+-... .... .. .........+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 455677777778888888888888777777777764321 1100 00 00001112345666777
Q ss_pred HHHhcccCchhhHHHHHhhcChh-hHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 169 LLHLQLYDPVLPDCDKALRLDED-NMKAHLY-KARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+.+.|-+..|+++.+-.+.++|. ++-.... +-....+.++++=-+..++.....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 88889999999999999999998 6655444 444456677887777777765543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.37 Score=41.37 Aligned_cols=168 Identities=17% Similarity=0.082 Sum_probs=102.2
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc----c--cH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE----D--NM 114 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~--~~ 114 (240)
+...-..|.+....|++++|+++.+.++..-|.+ ..+...+|.+..-.|++++|..+...+.+... . ..
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3444556778888889999999988888876654 44677788888888899998888888776532 1 12
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHc----CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 115 KAHLYKARAMHSLGQ--REEAKEYVRQLVEK----YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 115 ~~~~~la~~~~~~~~--~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
.+....+.++..+|+ +.+....+...-.. .|.+... ....+.++...-+++.+.......++.
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~-----------~~~r~~ll~~~~r~~~~~~ear~~~~~ 606 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL-----------VRIRAQLLRAWLRLDLAEAEARLGIEV 606 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH-----------HHHHHHHHHHHHHHhhhhHHhhhcchh
Confidence 344455677777772 33333333322221 2221111 223333333333355555444444433
Q ss_pred ----Chh--hHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 189 ----DED--NMK-AHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 189 ----~~~--~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
.|. ... ..+.++.+....|+.++|...+.+......
T Consensus 607 ~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 607 GSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 232 222 235899999999999999999988776543
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.3 Score=39.98 Aligned_cols=155 Identities=14% Similarity=-0.056 Sum_probs=117.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ-VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
-.+.|+..+......|+.+-|-..+..+.+. .|+.+.+...-+..-...|++..|...+++..+..|+...+-......
T Consensus 330 Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 330 YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINW 409 (577)
T ss_pred hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhH
Confidence 4567888888888889999999888888776 466677777788888889999999999999998889999888888889
Q ss_pred HHHcCCHHHHHH---HHHHHHHcCCCchHHHHHhccCchHHHHHHHHH-HHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 124 MHSLGQREEAKE---YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT-LLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 124 ~~~~~~~~~A~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
..+.|+.+.+.. .+.....-..+ ... ....+...+.. +.-.++.+.|...+.+++...|.+...+..+
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~-~~i-------~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKEN-NGI-------LEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccC-cch-------hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 999999998884 33222221111 111 12334555543 3345788999999999999999998888888
Q ss_pred HHHHHHcC
Q psy17412 200 ARAMHNLG 207 (240)
Q Consensus 200 a~~~~~~g 207 (240)
..+....+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 77766655
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.064 Score=46.62 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=104.2
Q ss_pred hHhHHHHhCCHHHHHHHHHHH------HHh----------------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc
Q psy17412 52 NGNKAFQSGQYEAALVQYDKA------IEQ----------------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a------~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
+|.+....+-|++|...|++. ++. .-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 455556666677777666642 111 1134789999999999999999999999776
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----H---------HHhc--cCchHHHHHHHHHHHHhc
Q psy17412 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----A---------IEQV--RDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 110 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~---------~~~~--~~~~~~~~~la~~~~~~~ 173 (240)
+++..|........+.|.|++-+.++..+.+...+.... + ++.+ ..+..-....|.-++..|
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence 567778888899999999999999998887754432110 0 0000 011112334455555556
Q ss_pred ccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 174 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 174 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
.|+.|.-.|. +..-|..++..+..+|+|..|...-+++-
T Consensus 1209 ~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1209 MYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6655544432 35567888899999999999998877663
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.009 Score=47.26 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=83.5
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.....+..+......+.+....|+|+.+...+..+-..-.........+-.....+|++++|.....-.+.-.-.++++.
T Consensus 315 ~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 315 ALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred HHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 34455666777777788888899999998888766555444445555666777888999999888888887666677776
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
..-+.....+|-++++..++++.+.++|..
T Consensus 395 ~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 395 TVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred eeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 666677778888999999999999888763
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.21 Score=37.56 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=66.2
Q ss_pred HHhCCHHHHHHHHHHHHHhc----CCC----hHHHHHHHHHHHHcc-CcCchHHHHHHHHhcC----c------c----c
Q psy17412 57 FQSGQYEAALVQYDKAIEQV----RDS----PVLYTNRALTLLHLQ-LYDPVLPDCDKALRLD----E------D----N 113 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~----~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~----~------~----~ 113 (240)
..+|+++.|..++.++-... |+. ...+++.|......+ +++.|...++++.+.- + + .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777765543 221 345666666666677 7777777777776551 1 1 1
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 114 MKAHLYKARAMHSLGQRE---EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
..++..++.++...+.++ +|...++.+-.-.|+.+.. +...-.+..+.++.+.+.+.+.+++..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~-----------~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV-----------FLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH-----------HHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 224556666666665544 3333444444444444433 433333333456666666666666554
|
It is also involved in sporulation []. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.12 Score=42.05 Aligned_cols=89 Identities=16% Similarity=-0.050 Sum_probs=68.9
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHH-HHhcCcccHHHHHHHHHHHHHcCCH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK-ALRLDEDNMKAHLYKARAMHSLGQR 130 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~ 130 (240)
+.......+....+.-.+..++..+|....+..+++......|....+...+.. +....|.+......+-.++. .+++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 151 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY 151 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHH
Confidence 466666778888888888999999999999999999888887776666655544 78888888888777777777 8888
Q ss_pred HHHHHHHHHHH
Q psy17412 131 EEAKEYVRQLV 141 (240)
Q Consensus 131 ~~A~~~~~~a~ 141 (240)
-+++..-.++.
T Consensus 152 ~~~l~~~~~~~ 162 (620)
T COG3914 152 LKLLGRTAEAE 162 (620)
T ss_pred HHHhccHHHHH
Confidence 87766555443
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.16 Score=39.55 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=90.9
Q ss_pred HHccCcCchHHHHHHHHhcC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CchHHHHHhccCc
Q psy17412 91 LHLQLYDPVLPDCDKALRLD---------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP---TRRKLAIEQVRDS 158 (240)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~ 158 (240)
+..+++++|...-+..+..- --....|+.+..++...|+...-...+...+.... +... .
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~--------q 208 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEG--------Q 208 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchh--------H
Confidence 34578888887776655321 11245788888888888887666666655554321 1111 2
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhh----cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALR----LDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
+.+.+.+-..|...+.|+.|-....+..- .+...+...+.+|.+..-+++|..|.+++-+++...|.+.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34566777888899999999888777651 1123467788999999999999999999999999999753
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=29.66 Aligned_cols=29 Identities=34% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.++.++|.++..+|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788899999999999999999988865
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.012 Score=29.71 Aligned_cols=30 Identities=30% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
.++.++|.++..+|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567889999999999999999999988754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.52 Score=39.84 Aligned_cols=169 Identities=15% Similarity=0.029 Sum_probs=110.7
Q ss_pred hHHHHHHHhHhHHH-HhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc----
Q psy17412 44 DIADHFKANGNKAF-QSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED---- 112 (240)
Q Consensus 44 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---- 112 (240)
..+...+.+|.+++ ...+++.|..++.+++.....+ ..+...++.++.+.+... |...+++.++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46788889999988 7889999999999998876432 224456788888888777 99999999876544
Q ss_pred cHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCC--CchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 113 NMKAHLYK--ARAMHSLGQREEAKEYVRQLVEKYP--TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 113 ~~~~~~~l--a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
.....+.+ .......+++..|+..++.+..... .++.. ........+.+....+..+++++.+.++...
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~-------~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV-------FVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH-------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 12222222 2233334799999999999988763 33322 0112333455566667778888888877432
Q ss_pred C----------hhhHHHHHHHHH--HHHHcCCHHHHHHHHHHHH
Q psy17412 189 D----------EDNMKAHLYKAR--AMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 189 ~----------~~~~~~~~~la~--~~~~~g~~~~A~~~~~~~~ 220 (240)
. +....++..+-. ++...|+++.+...+++.-
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 123445554444 4567788777776655443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.3 Score=42.94 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=67.5
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcc-------CcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQ-------LYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
...++...+.|++|+..|++.-...|+. -++.+..|......- .+++|+..|++... .|.-|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456667778888888888888888765 345666666655432 34555555555432 344556677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
.+|..+|++++-++++.-+++..|++|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 88888888888888888888888887765
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0073 Score=44.99 Aligned_cols=83 Identities=10% Similarity=0.166 Sum_probs=69.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 69 YDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY-KARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 69 ~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
|.++....|+++..|...+..-.+.|.+.+-...|..++...|.+++.|.. .+.-+...++++.+...+.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 344445567888899888888888888999999999999999999998877 4455677899999999999999999998
Q ss_pred hHHH
Q psy17412 148 RKLA 151 (240)
Q Consensus 148 ~~~~ 151 (240)
+..+
T Consensus 176 p~iw 179 (435)
T COG5191 176 PRIW 179 (435)
T ss_pred chHH
Confidence 8873
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.027 Score=41.33 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
....++-..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++.-|+++.+-..
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 3456666778889999999999999999999999999999999999999999999999999999998765443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.039 Score=43.03 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-------HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
..=|..++++++|..|..-|..++++..+-... .-+...-...+-..+..||.++++.+-|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 334667889999999999999998875432211 0000011234567789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
.....+...|.++..+.+|.+|-.-+.-+.
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887665443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.39 Score=38.73 Aligned_cols=129 Identities=18% Similarity=0.049 Sum_probs=75.7
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 129 (240)
...+..+.++|-.+.|+..- .++...+.+ ..+.|+.+.|.+..++ .+++..|..+|.....+|+
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCC
Confidence 34455555666666666553 334555444 4677888877665433 2467799999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
++-|..+|+++- + +..+..+|.-.|+.+.=.+..+.+......+ ..-.+++.+|+.
T Consensus 363 ~~lAe~c~~k~~----d---------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd~ 418 (443)
T PF04053_consen 363 IELAEECYQKAK----D---------------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQAALLLGDV 418 (443)
T ss_dssp HHHHHHHHHHCT--------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT-H
T ss_pred HHHHHHHHHhhc----C---------------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCCH
Confidence 999999998753 2 6677777777787644444444433322211 111344456666
Q ss_pred HHHHHHHHH
Q psy17412 210 EEAKEYIRE 218 (240)
Q Consensus 210 ~~A~~~~~~ 218 (240)
++.++.+.+
T Consensus 419 ~~cv~lL~~ 427 (443)
T PF04053_consen 419 EECVDLLIE 427 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.059 Score=39.66 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
...++=..+...++++.|....++.+..+|.++.-+...|.+|.++|.+..|++.+...++..|+.+.+-.....
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 334455567788899999999999999999999888899999999999999999999999888888766544433
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.3 Score=46.35 Aligned_cols=64 Identities=13% Similarity=-0.000 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
....|...|++....|+++.|...+-++.+.. -+.+....|..++..|+...|+..+++.++.+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 45788899999999999999999998888776 46788999999999999999999999999654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.26 Score=33.85 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=73.9
Q ss_pred HccCcCchHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 92 HLQLYDPVLPDCDKALRLDEDN--MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
+.+..++|+..|...-+-.-.. .-+.+..|.+..+.|+-..|+..|..+-.-.|- |.. .. -.....-+.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~-~r-----d~ARlraa~lL 142 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQI-GR-----DLARLRAAYLL 142 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cch-hh-----HHHHHHHHHHH
Confidence 3455666666666655433222 235566677777778888888887776654432 211 00 01144455666
Q ss_pred HHhcccCchhhHHHHH-hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 170 LHLQLYDPVLPDCDKA-LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
+..|-|++...-.+.. -..+|-...+.-.+|..-++.|++.+|..+|.++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777777665555443 233454566667777777888888888888877665
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.15 Score=42.97 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=36.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHH------HHh----cCCC-hHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKA------IEQ----VRDS-PVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
.+.+-..|..+.+..++++|+++|++. +++ .|.. ...-...|.-..+.|+++.|+..|-.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 344555667777777888888888753 332 2322 122234466666778888877776543
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.58 Score=36.67 Aligned_cols=173 Identities=13% Similarity=0.137 Sum_probs=119.7
Q ss_pred hHHHHhCCHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHc------------cCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 54 NKAFQSGQYE-AALVQYDKAIEQVRDSPVLYTNRALTLLHL------------QLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 54 ~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
......|.++ ++++.-.+.+..+|+...+|...-.++... .-.++-+.+...++..+|+...+|..+
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3344455554 577777788888998877776544444322 134556677788889999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh----cccCchhhHHHHHhhcChhhHH
Q psy17412 121 ARAMHSLG--QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL----QLYDPVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 121 a~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~ 194 (240)
..++.+.+ ++..=+...+++++.+|.+... |...=.+.... ....+=+++.++++..++.+..
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~-----------W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYs 184 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHA-----------WHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYS 184 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccc-----------hHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhh
Confidence 99998776 4678889999999999987665 44443333322 2245557788899988999999
Q ss_pred HHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 195 AHLYKARAMHN------LGQ------REEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 195 ~~~~la~~~~~------~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+|.....++-. .|+ ...-+..-..++-.+|++..+|....-++
T Consensus 185 aWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 185 AWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred HHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 99888777652 332 12344556667778899988887654443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.31 Score=33.48 Aligned_cols=144 Identities=13% Similarity=-0.001 Sum_probs=98.6
Q ss_pred HhHhHHHHhCCHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc--cc--HHHHHHHHHHH
Q psy17412 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--DN--MKAHLYKARAM 124 (240)
Q Consensus 51 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~--~~~~~~la~~~ 124 (240)
..+..+.+.+..++|+.-|...-+.+-.. ..+....|.+..+.|+...|+..|..+-...| .- ..+...-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 34445555666777777776665543322 45677888899999999999999999876543 22 23556667788
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 204 (240)
...|.|++-....+..-. +.++ -.....-.||..-++.|++..|.++|..... +...+....+.+.+.+
T Consensus 143 vD~gsy~dV~srvepLa~--d~n~--------mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAG--DGNP--------MRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred hccccHHHHHHHhhhccC--CCCh--------hHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 889999987766654321 2222 1234478899999999999999999999877 4445556666666554
Q ss_pred H
Q psy17412 205 N 205 (240)
Q Consensus 205 ~ 205 (240)
.
T Consensus 212 d 212 (221)
T COG4649 212 D 212 (221)
T ss_pred H
Confidence 3
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.13 Score=31.62 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
+...+|.+....|++++|+..+++++++...
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.38 Score=33.90 Aligned_cols=83 Identities=10% Similarity=-0.010 Sum_probs=59.4
Q ss_pred HHHHccCcCchHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHH
Q psy17412 89 TLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 167 (240)
.++....-+.|...|-++-... -+++...+.+|..|. ..+.++++..+.+++++.+.+... +++++..++.
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~-------n~eil~sLas 186 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNF-------NPEILKSLAS 186 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCC-------CHHHHHHHHH
Confidence 3444444556666665544322 256778888887776 678899999999999988765322 4667999999
Q ss_pred HHHHhcccCchh
Q psy17412 168 TLLHLQLYDPVL 179 (240)
Q Consensus 168 ~~~~~~~~~~A~ 179 (240)
++.+.|+++.|.
T Consensus 187 ~~~~~~~~e~AY 198 (203)
T PF11207_consen 187 IYQKLKNYEQAY 198 (203)
T ss_pred HHHHhcchhhhh
Confidence 999999998874
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.76 Score=36.67 Aligned_cols=167 Identities=12% Similarity=0.017 Sum_probs=102.4
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--------C----
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--------D---- 110 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~---- 110 (240)
+-.++.|+.-.......++-+.|+....+++...|. ....++.+|...++-+..-.+|+++++- +
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~ 375 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESA 375 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhh
Confidence 334566666666666777888888887777766655 5556777776666666555666655421 0
Q ss_pred ---cccH----H-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHH-HHHH
Q psy17412 111 ---EDNM----K-----------AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL-TLLH 171 (240)
Q Consensus 111 ---~~~~----~-----------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~ 171 (240)
.+++ + +|+..-....+..-.+.|...|-++-+..-.... ++..-|. -+..
T Consensus 376 s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~-----------vyi~~A~~E~~~ 444 (660)
T COG5107 376 SKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH-----------VYIYCAFIEYYA 444 (660)
T ss_pred ccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc-----------eeeeHHHHHHHh
Confidence 0111 1 1111222223334455566666666554312111 1333332 3455
Q ss_pred hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 172 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.|++.-|...|+-.+...|+++-.....-..++..++-+.|...|++++..-
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 7899999999999999999887766666677788899999999998777543
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.81 Score=37.54 Aligned_cols=140 Identities=14% Similarity=0.027 Sum_probs=91.5
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-----c----------------CCChH---HHHHHHHHHHHccC
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ-----V----------------RDSPV---LYTNRALTLLHLQL 95 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~----------------~~~~~---~~~~la~~~~~~~~ 95 (240)
...|-+.+.++.++.+...+|+.+.|.....+++=. . |.+-. +.+..-....+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 346889999999999999999999988888887643 1 12221 22233344456789
Q ss_pred cCchHHHHHHHHhcCcc-cHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HHcCCCchHHHHHhccCchHHHHHHHHH
Q psy17412 96 YDPVLPDCDKALRLDED-NMKAHLYKARAM-HSLGQREEAKEYVRQL-----VEKYPTRRKLAIEQVRDSPVLYTNRALT 168 (240)
Q Consensus 96 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~la~~ 168 (240)
+..|.++++-.++++|. ++-+...+...| .+..+|+=-+..++.. +...|+... -..+|..
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y------------S~AlA~f 425 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY------------SLALARF 425 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH------------HHHHHHH
Confidence 99999999999999998 776555555444 4445565555555443 223343211 2344455
Q ss_pred HHHhcc---cCchhhHHHHHhhcChh
Q psy17412 169 LLHLQL---YDPVLPDCDKALRLDED 191 (240)
Q Consensus 169 ~~~~~~---~~~A~~~~~~~l~~~~~ 191 (240)
|..... -..|...+.+|++..|.
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 554433 35678888888888773
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.065 Score=39.89 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 447888999999999999999999999999999999999999999999999999999988763
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.039 Score=41.36 Aligned_cols=62 Identities=21% Similarity=0.057 Sum_probs=50.5
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 178 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|..+|.+|..+.|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999887665568888888877754
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.074 Score=26.02 Aligned_cols=32 Identities=16% Similarity=-0.007 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q psy17412 194 KAHLYKARAMHNLGQREEAKEY--IRELVEKYPT 225 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~--~~~~~~~~p~ 225 (240)
+.+..+|..+...|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4567778888888888888888 4466666654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.1 Score=45.72 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=78.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh-------cccCchhhHHHHHhhcChhh
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL-------QLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------~~~~~A~~~~~~~l~~~~~~ 192 (240)
...++...+.|+.|+..|++.-...|...+. .++.+..|...... ..+++|+..|++... .|.-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 551 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEG--------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGA 551 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccc--------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCC
Confidence 3456778889999999999999999876544 34467777666543 245666666665433 4555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
+--|...|.+|..+|++++-++.+.-+++..|.+|.+-
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 552 PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 66788999999999999999999999999999988753
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.14 Score=38.15 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 141 (240)
|..-+....++++. ....++..++..+...|+++.+.+.++..+..+|.+...|..+-..|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 55555555555543 2356677777788888888888888888888888877788888888888888888888887776
Q ss_pred Hc
Q psy17412 142 EK 143 (240)
Q Consensus 142 ~~ 143 (240)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 64
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.17 Score=29.66 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
....|.-++...+.++|+..++++++..++.++. ..++-.+..++...|+|.+.+.+..+-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~r--------f~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDR--------FRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777777777776665544 3334455556666777766666544433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.45 Score=40.34 Aligned_cols=119 Identities=18% Similarity=0.047 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
.|-.++.-|...|+|+.|.+.|.++-. ...-...|-+.|+|.+|.+.-+++.. |+.. ...
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t----------~~~ 826 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEAT----------ISL 826 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhH----------HHH
Confidence 445667777777777777777765421 11223455566777776666555432 2211 112
Q ss_pred HHHHHHHHHHhc-------------ccCchhhHHHHHhh----------cChh-hHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 162 YTNRALTLLHLQ-------------LYDPVLPDCDKALR----------LDED-NMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 162 ~~~la~~~~~~~-------------~~~~A~~~~~~~l~----------~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
|...+.-+-+.| ..+.|+..|++.-. ..|+ -.+....+|.-+...|+...|...|-
T Consensus 827 yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 333333333334 44445555544211 1222 14566778888889999999888776
Q ss_pred HHH
Q psy17412 218 ELV 220 (240)
Q Consensus 218 ~~~ 220 (240)
++-
T Consensus 907 ea~ 909 (1636)
T KOG3616|consen 907 EAG 909 (1636)
T ss_pred hhh
Confidence 553
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.072 Score=32.73 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=45.4
Q ss_pred HHHhcccCchhhHHHHHhhcChh---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 169 LLHLQLYDPVLPDCDKALRLDED---------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
..+.|+|..|++.+.+.+..... ...+..++|.+....|++++|+..+++++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 35679999998888888765332 2456788999999999999999999999987543
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.082 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=20.4
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHH--HHHHhcCC
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYD--KAIEQVRD 78 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~--~a~~~~~~ 78 (240)
+.++.+|..+..+|++++|++.|+ -+...++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 456667777777888888887733 55555443
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.026 Score=25.27 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677788888888888877664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.12 Score=45.95 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=105.8
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc---
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--- 109 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 109 (240)
..+..+..+..++..+...+++++|+..-.++.-. .|+....+.+++...+..++...|+..+.++..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 46778899999999999999999999998887654 2445667888998899999999999999888754
Q ss_pred -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 110 -----DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 110 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
.|.......+++.++...++++.|+.+.+.|......-.. ...-.....+..++..+...+++..|+...+.
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g---~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG---PKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC---ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3555567788899999999999999999999985432111 00011234455666666666666666655555
Q ss_pred Hhhc
Q psy17412 185 ALRL 188 (240)
Q Consensus 185 ~l~~ 188 (240)
...+
T Consensus 1125 t~~i 1128 (1236)
T KOG1839|consen 1125 TYGI 1128 (1236)
T ss_pred HHHH
Confidence 4433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.4 Score=37.31 Aligned_cols=121 Identities=12% Similarity=0.013 Sum_probs=75.8
Q ss_pred CchHHHHHHHHhcC---c-ccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH
Q psy17412 97 DPVLPDCDKALRLD---E-DNMKAHLYKARAMH-SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171 (240)
Q Consensus 97 ~~A~~~~~~~~~~~---~-~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 171 (240)
..|+.+++.+++.. | ..+.+.+.+|.+++ ...+++.|..++++++.+...+.-. .........++.++.+
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~-----d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT-----DLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH-----HHHHHHHHHHHHHHHh
Confidence 34566666666322 2 13457888888776 7789999999999998877542111 0012234556777877
Q ss_pred hcccCchhhHHHHHhhcChh----hHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 172 LQLYDPVLPDCDKALRLDED----NMKAHLYK--ARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 172 ~~~~~~A~~~~~~~l~~~~~----~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
.+... |...+++.++...+ .....+.+ .......+++..|++.++......
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 77666 88888888876544 12222222 223333478888999888887765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.1 Score=35.85 Aligned_cols=50 Identities=8% Similarity=-0.125 Sum_probs=41.7
Q ss_pred HHHHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHH
Q psy17412 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTN 85 (240)
Q Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 85 (240)
-+..+++|.+...|+.+-..+-.+|.+++-.+.|++...-.|-.+.+|..
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~l 81 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRL 81 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHH
Confidence 34567899999999999999999999999999999998877765555543
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.044 Score=27.20 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=19.4
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+++..+|.+....++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556677777777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.7 Score=37.60 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED---------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
++......++.....+++.+|...+.++...-+. .....-..|.+....|++++|++..+.++..-|.+..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3555666788888899999999888887654332 1234556788889999999999999999998887544
Q ss_pred HHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh------hHHHHHHHHHHHHHcCC
Q psy17412 150 LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------NMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 150 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~ 208 (240)
. .....+..+|.+..-.|++++|..+...+.+.... ...+....+.++..+|+
T Consensus 494 ~------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 494 R------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred h------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 3 33455788899999999999999999888776332 23344566778888883
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.69 Score=34.33 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSP----VLYTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
.+.++|+.-|+++++..+... .++-.+..+++.++++++-.+.|.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 356666666777666655432 244455566666666666666665554
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.079 Score=40.36 Aligned_cols=104 Identities=26% Similarity=0.330 Sum_probs=85.3
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC-----------C--------ChHHHHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVR-----------D--------SPVLYTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----------~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
...-..|...+..++++.|..-|.++..... + ......+++.+-+..+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 3444567777888888888888888765421 1 12355678888899999999999988888
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 108 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
..++....+++.++..+....++++|+..++.+....|++...
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 8888889999999999999999999999999999999998766
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.063 Score=40.87 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=85.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---CchHH-HHH----hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYP---TRRKL-AIE----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~-~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
.+.-.++.+++..|..-+.+++..-. .+... ..+ .......+..+++.+-.+.+.+..|+.....++..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 44556777777777777777665322 11000 000 11122345777889999999999999998888888999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
...+++..+..+..+.++++|.+.++.+....|++..+...+.
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 9999999999999999999999999999999999987765544
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.057 Score=26.79 Aligned_cols=30 Identities=13% Similarity=-0.102 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 144 (240)
+++..+|.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456778888888888888888888887753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.17 Score=26.00 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
+.+|.+|+.+|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677888888888888888888874
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.041 Score=24.65 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVR 138 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~ 138 (240)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666777777777777766654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.16 Score=37.83 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
.....+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+.-.++++|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 355567788899999999999999999999999999999999999999999988887654
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.11 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 207 GQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 207 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
|+.+.|...|++++...|.++.+|..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4667788888888888888888887776653
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.16 Score=38.04 Aligned_cols=62 Identities=15% Similarity=-0.052 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 65 ALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 65 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
|..+|.+|+...|+.+..+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987665567788888877776
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.2 Score=42.63 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=84.0
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-cc--------
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-ED-------- 112 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~-------- 112 (240)
+...++.|.+.|.+....|.++.|...+-.|.+.. -+.+....|...+..|+...|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 56789999999999999999999999999988876 56789999999999999999999999999665 22
Q ss_pred --c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCchHH
Q psy17412 113 --N------MKAHLYKARAMHSLGQR--EEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 113 --~------~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~ 150 (240)
. ..+....+......+++ .+-+..|+.+..+.|...+.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence 1 11334444444455553 34678889999999976555
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.46 Score=33.54 Aligned_cols=76 Identities=16% Similarity=-0.014 Sum_probs=57.1
Q ss_pred HhCCHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHH
Q psy17412 58 QSGQYEAALVQYDKAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED----NMKAHLYKARAMHSLGQREE 132 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~ 132 (240)
.+..=+.|.+.|-++-... -+++...+.+|..|. ..+.++++..+.+++++.+. +++++..++.++..+|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3334456666665543321 245788888887776 67889999999999988643 58899999999999999998
Q ss_pred HH
Q psy17412 133 AK 134 (240)
Q Consensus 133 A~ 134 (240)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.9 Score=33.98 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=91.4
Q ss_pred chHHHHHHHHhcCcccHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHH
Q psy17412 98 PVLPDCDKALRLDEDNMKAHLYKARAM------------HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165 (240)
Q Consensus 98 ~A~~~~~~~~~~~~~~~~~~~~la~~~------------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 165 (240)
++++.-.+.+..+|+...+|...-.++ ..+.-+++-+.....+++.+|++..+ |..+
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~a-----------W~hR 115 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGA-----------WHHR 115 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHH-----------HHHH
Confidence 445555666677777665554332221 22234667778888899999998777 9999
Q ss_pred HHHHHHhcc--cCchhhHHHHHhhcChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 166 ALTLLHLQL--YDPVLPDCDKALRLDEDNMKAHLYKARAMHNL----GQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 166 a~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
..++.+.+. +..=+..++++++.+|.+..+|...-.+.... ....+-+++..+++..++.|-.+|..-..++.
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 999987754 56778899999999999877775544443332 23567778889999889988888877665553
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.8 Score=33.24 Aligned_cols=177 Identities=21% Similarity=0.127 Sum_probs=97.6
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-----------------
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE----------------- 111 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------------- 111 (240)
-+.+-....+..+..+-++.-..+++++|..+.++..++.-- ..-..+|...++++++...
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 344445566667777778888888888888877776665422 2223445555555553210
Q ss_pred ------ccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 112 ------DNMK--AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 112 ------~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
.+.. ....++.|..++|+..+|++.++...+-.|-.... .+.-++-..+....-|.+....+-
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~l---------niheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTML---------NIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 34568899999999999999999988877743222 223344444444333333322222
Q ss_pred HHhhc-ChhhHHHHHHHH-------------HHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 184 KALRL-DEDNMKAHLYKA-------------RAMHNLGQ---REEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 184 ~~l~~-~~~~~~~~~~la-------------~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
+.-++ -|....+.+.-+ ....+.|- -..|++.+.++++.+|.-|.....+..+
T Consensus 336 kYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ksl 405 (556)
T KOG3807|consen 336 KYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSL 405 (556)
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHhc
Confidence 22111 122211111100 11111221 1357888899999999887766655443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.52 Score=27.63 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=39.6
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHH---HHHHHHccCcCchHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR---ALTLLHLQLYDPVLPDCDK 105 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l---a~~~~~~~~~~~A~~~~~~ 105 (240)
+......|.-++...+.++|+..++++++..++.+..+..+ ..+|...|+|.+.+.+...
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888888888888777665544443 4456666777666655433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.7 Score=34.72 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=102.3
Q ss_pred hCCHHHHHHHHHHHHHh------------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc-----C-----------
Q psy17412 59 SGQYEAALVQYDKAIEQ------------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL-----D----------- 110 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~----------- 110 (240)
...|++|...|.-+... .|-+...+..++.+....|+.+-|.....+++-. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45688888888887765 3445778889999999999999988888887621 1
Q ss_pred -----cccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-chHHHHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 111 -----EDNMKA---HLYKARAMHSLGQREEAKEYVRQLVEKYPT-RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 111 -----~~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
|.+-.. .+..-..+.+.|-+..|.++.+-.+.++|. +|-. +.+.+-....+..+|.=-++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~----------~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG----------ILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh----------HHHHHHHHHHHHHhHHHHHHH
Confidence 223222 223334456779999999999999999998 5544 122233333345556555555
Q ss_pred HHHH-----hhcChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Q psy17412 182 CDKA-----LRLDEDNMKAHLYKARAMHNLGQ---REEAKEYIRELVEKYP 224 (240)
Q Consensus 182 ~~~~-----l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 224 (240)
++.. +...|+. ..-..+|..|..... ...|...+.+|+...|
T Consensus 401 ~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 401 SNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 4443 2333443 233556666666555 5678889999998887
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.9 Score=36.53 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=24.0
Q ss_pred HHhCCHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRD--SPVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
...|+|-...++++..-.-..+ -..++.++|..+..+..+++|.++|.+.
T Consensus 771 ~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 771 KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555554432211111 1335555565555555555555555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.93 Score=36.62 Aligned_cols=102 Identities=17% Similarity=0.013 Sum_probs=65.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 55 KAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
...+.|+.+.|.+..+ ..+++..|..+|...+..|+++-|.++|+++-. +-.+..+|...|+-+.=.
T Consensus 327 LAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 327 LALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHH
T ss_pred HHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHH
Confidence 3456677777766543 234678999999999999999999999998742 345666777788876555
Q ss_pred HHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+..+.+..... +...-.+++..|+.+++++.+.+.
T Consensus 394 kl~~~a~~~~~----------------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERGD----------------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-----------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHccC----------------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55544443332 333334556667777776665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.25 Score=35.25 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
.-+.+.+...+++.....-++-.|.+......+-.++.-.|++++|...++-+-++.|+...-
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 345677888999999999999999999999999999999999999999999999999987543
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.2 Score=35.27 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcC---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLD---------EDNMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
...+.+++.-+|+|..|++.++.. +++ +-+...++..|-+|+.+++|.+|+..|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667888899999999988664 222 2346778999999999999999999999887
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=93.71 E-value=2.5 Score=32.51 Aligned_cols=133 Identities=10% Similarity=-0.026 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------- 150 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------- 150 (240)
.-+.+...-.+..+..+-++....+++++|..+.++..++.-. .--..+|.+.++++++........
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 3444555556667777778888999999999999988877532 234567888888887754332111
Q ss_pred -HHHhccC--chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh--HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17412 151 -AIEQVRD--SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN--MKAHLYKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 151 -~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~ 216 (240)
+...-.. ...+...++.|-.++|+..+|++.+....+-.|-. ..+.-++-..+..+.-|.+....+
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111 22345667889999999999999999888776632 233445555555554444443333
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.73 Score=30.67 Aligned_cols=59 Identities=19% Similarity=0.096 Sum_probs=45.5
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCc
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDP 98 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 98 (240)
.+-..-.+.....+...+..|++.-|.++.+.++..+|++..+...++.++.++|.-.+
T Consensus 64 v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 64 VELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 33344567788888899999999999999999999999999999999998888775543
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=93.63 E-value=2.6 Score=32.46 Aligned_cols=169 Identities=14% Similarity=0.061 Sum_probs=108.0
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhc----C--CChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-----cccH--HH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQV----R--DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-----EDNM--KA 116 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~--~~ 116 (240)
..+...|+..++|.+|+......+..- . .-.+++..-..+|....+..+|...+..|-... |... ..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 346778889999999999888776542 1 124566667788888888888887776654321 3222 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---hHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTR---RKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
-..-|..+....+|..|..+|-++++-...- ..+ +. +--|..+..+....-+--.++-.-+.+++....+.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A-~~-----sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKA-LT-----SLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHH-HH-----HHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 3445667777789999999999998754321 111 10 11133444444333322233333445566666678
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q psy17412 194 KAHLYKARAMHN--LGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 194 ~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p 224 (240)
+++...+.++.. +.++..|+..|..-+..+|
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 888888888764 5688889888888777666
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.4 Score=34.85 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=45.8
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH--HHHH--HHHHHHHccCcCchHHHHHHHHhc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV--LYTN--RALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~--la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
.....+..++..++|..|.+.+......-|.... .+.. .|.-++..-++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456777888999999999999999886344333 3333 445556788899999999987754
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.35 Score=22.37 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRAL 88 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 88 (240)
|+.+.+...|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777777777777765543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.65 Score=34.31 Aligned_cols=86 Identities=17% Similarity=0.092 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh------hHHHHHHHHHHH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------NMKAHLYKARAM 203 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~ 203 (240)
....+..+++++......... .-...+...+|..|+..|++++|+++|+.+...... ...+...+..|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~-----R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQN-----RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 334566666666544321111 111345778999999999999999999999655432 245677888899
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy17412 204 HNLGQREEAKEYIRELV 220 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~~ 220 (240)
..+|+.+..+.+.-+.+
T Consensus 229 ~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 99999998887765544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.8 Score=32.01 Aligned_cols=59 Identities=17% Similarity=0.020 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHSLGQREEAKEYVRQ 139 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 139 (240)
.+...+|.-|+..|++++|+..|+.+..... -...+...+..|....|+.+..+...-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455677777777777777777777754321 1234556666777777777766655433
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.7 Score=34.62 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.+.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445667788899999999999999999999999999999999999998888888776543
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.7 Score=35.00 Aligned_cols=66 Identities=18% Similarity=0.028 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 68 QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 68 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
+.++|++..++. .-.+ .+..+.|+++.|.....++ ++..-|..||.+....+++..|.+++.++..
T Consensus 629 ~~e~AL~~s~D~-d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 629 MKEQALELSTDP-DQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred chHhhhhcCCCh-hhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 344455554443 2222 3445677777776655443 4556688888888888888888888887754
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=92.29 E-value=4.2 Score=31.34 Aligned_cols=162 Identities=19% Similarity=0.083 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc--------------------------CcCchHHHHHHHHhcC-cccH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ--------------------------LYDPVLPDCDKALRLD-EDNM 114 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--------------------------~~~~A~~~~~~~~~~~-~~~~ 114 (240)
-++|+.+-.-...+.|..++++-.++.+.++.. -.+++...+.+++... |.-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 468888888888889999998887777766522 1234455555555433 2222
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc-
Q psy17412 115 KAHLYKARAMHS-----LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL- 188 (240)
Q Consensus 115 ~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~- 188 (240)
...-.++.++.. .-+|..-...|.-...+.|+ |.+-.|.+.......-.+.++...+.....
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS------------PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~ 359 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS------------PVVTLNRAVALAMREGPAAGLAMVEALLARP 359 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC------------CeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence 222223333222 12455545555555555554 445677777777766677777777666554
Q ss_pred -ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 189 -DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 189 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
-......+...|..+.++|+.++|...|++++.+.++..+......+
T Consensus 360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 22345567788999999999999999999999999887765544433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.1 Score=32.27 Aligned_cols=57 Identities=9% Similarity=-0.029 Sum_probs=27.3
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 112 (240)
+.+.+..++++...+.-++..|.+......+-..+.-.|+|++|..-++-+-.+.|+
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 344444455555555544555544444444444444445555554444444444443
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.3 Score=36.71 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=13.1
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIE 74 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 74 (240)
..+..-|..++.+|++++|...|-+.+.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3344444444444555555444444443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=91.89 E-value=3.9 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=26.6
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDS 79 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 79 (240)
.+..+|....+.|+|++.+.++++++..++.-
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 35678899999999999999999999997753
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.56 Score=24.13 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
+.+|..|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688999999999999999999885
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=91.82 E-value=2.6 Score=35.44 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
+++-.|..+....++++|-+.|-++
T Consensus 806 Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 806 VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3555666666666666665555544
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=91.79 E-value=2.6 Score=33.26 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC---hh
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD---ED 191 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~ 191 (240)
.++..+|.-|...|+++.|++.|-++-......... ...+.++..+-...|+|..-..+..++...- .+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv--------Inm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV--------INMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH--------HHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 467789999999999999999999977665554433 4457788888888899988888887776541 00
Q ss_pred -----hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 192 -----NMKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 192 -----~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
.+.+...-|.+...+++|..|..+|-.+.
T Consensus 223 ~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 223 LAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 13345566677777889999988886543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=6.6 Score=32.25 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
-|....++++|++.+...++.+..+..+.-.+...+..
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 34456788888888888888887777766665554443
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=91.52 E-value=4.3 Score=32.11 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=72.9
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcC--------ccc
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLD--------EDN 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~ 113 (240)
.-.++..+|.-|...|+++.|++.|.++-...... ...+.++-.+-...|+|.....+..++.+.- .-.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 45678889999999999999999999976654332 4567777788888999998888888877641 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~ 141 (240)
+.....-|.+.+.+++|..|..++-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2355566777777789999988886553
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.42 E-value=4.9 Score=30.32 Aligned_cols=167 Identities=13% Similarity=0.040 Sum_probs=101.7
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-----cccHHH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRD--------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-----EDNMKA 116 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ 116 (240)
..+|+-....+++++|+..|.+.+...-. .......++.+|...|++..-.+.....-..- |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45677788899999999999999876221 13466789999999999876554443332211 222222
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc------C
Q psy17412 117 HLYKARA-MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL------D 189 (240)
Q Consensus 117 ~~~la~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~ 189 (240)
...+-.- -.....++.-+......++........ --....-..+...+++.|+|.+|+......+.- .
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~-----fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK-----FLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 2222211 122234555555555555433221111 001123566778899999999999888776532 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
|+-..++..-+.+|....+..++..-+..+-.
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 33456777778888888888887777665543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=91.33 E-value=8.2 Score=32.73 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=28.0
Q ss_pred HHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
...+...+++.+|....++--+.- +++++-.|+.+....++++|.+.|.++
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 344455677777766554433332 335555666666666666665555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.74 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
...|..+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45667777777788888888777764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=90.47 E-value=1 Score=21.55 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQ 139 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 139 (240)
+...|..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566677777777777777777654
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.38 E-value=6.3 Score=29.79 Aligned_cols=118 Identities=12% Similarity=0.015 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcC-CC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCH
Q psy17412 63 EAALVQYDKAIEQVR-DS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHSLGQR 130 (240)
Q Consensus 63 ~~A~~~~~~a~~~~~-~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~ 130 (240)
++-++.+++.++... ++ ..++.++|..|.+.++.+.+.+.+.+.++..- +-.-....+|.+|..+.-.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 445555655554322 22 57899999999999999999999888775432 1122445677777776667
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 131 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
.+.++..+..++...+...- .......|...+...++.+|-..+...+.-
T Consensus 172 ~e~lE~~~~~iEkGgDWeRr--------NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 172 EESLEVADDIIEKGGDWERR--------NRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHhCCCHHhh--------hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 77777777777776654322 122334455566667788887777776644
|
|
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.7 Score=37.03 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=81.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH--hcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH--LQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
-|...+..+++..+..-|..++.+-|.+.. .......+.+.+++. .|+|..++....-++...|....++.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-------~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-------VVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccch-------hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 355667777888888888888888774322 124446667776665 57899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
..+.+|...++.+-|++...-.....|.+..+-.
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 9999999999999999998888888898855444
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=90.12 E-value=8.2 Score=30.69 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCcccHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK--AHLY--KARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~--la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
....+.-.+..++|..|...+......-|.... .+.. .|..+....++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666778899999999999999875333333 3333 345567888999999999988765
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.5 Score=24.68 Aligned_cols=31 Identities=39% Similarity=0.527 Sum_probs=21.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+..+...|..+-+.|++++|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455666677777777777777777766553
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=90.10 E-value=3.5 Score=35.29 Aligned_cols=106 Identities=30% Similarity=0.418 Sum_probs=87.3
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHc--cCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHL--QLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
.+......|+..+..+++..+.--|..++.+-|.+ .....+.+.|+... |++..++....-++...|....++.
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 44555667888899999999988888888887743 45666777777764 6899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
..+.+|...++++-|++.+.-.....|.+...
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 99999999999999999988888888887544
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.62 Score=36.88 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=45.9
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHH--------hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKAL--------RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
...+.+++.-+|+|..|++.++..- ...+-+...++..|-+|+-+++|.+|++.|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888999999998876541 11133456789999999999999999999988874
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=89.49 E-value=2.5 Score=28.17 Aligned_cols=51 Identities=27% Similarity=0.192 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
.+.....+.-.+..|++.-|.+..+.++..+|++..+...++.++..+|..
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 344555566666667777777777777777777777776666666665543
|
|
| >KOG2561|consensus | Back alignment and domain information |
|---|
Probab=89.40 E-value=4.3 Score=32.45 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=64.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHHccCc---CchHH-------HHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQV-----------RDSPVLYTNRALTLLHLQLY---DPVLP-------DCD 104 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------~~~~~~~~~la~~~~~~~~~---~~A~~-------~~~ 104 (240)
+-.+...|..++....|++|+.++-.|-+.+ .+.+.....+.+||+.+.+. ..|.. .|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 3456677888889999999998887765542 23345556788899988764 33433 333
Q ss_pred HHHhc--------C-cccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 105 KALRL--------D-EDNM------KAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 105 ~~~~~--------~-~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
++..- . +..+ ..+..-|.+.+++|+-++|..+++.+..
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22211 1 2222 2455678999999999999999998865
|
|
| >PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) | Back alignment and domain information |
|---|
Probab=89.00 E-value=5.6 Score=31.36 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=39.5
Q ss_pred CcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 95 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
..-+|+..++.++...|.+......+..+|..+|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3556778888888999999999999999999999999999988654
|
The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 []. |
| >COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.77 E-value=8.4 Score=28.95 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH--------ccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCHHHH
Q psy17412 64 AALVQYDKAIEQVRDSPVLYTNRALTLLH--------LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL--GQREEA 133 (240)
Q Consensus 64 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A 133 (240)
.|++.-...+..+|..-.+|...-.+... ..-.+.-+..+..+++-+|.+...|...-.++..- .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 46666666666677665565554444433 11234556677788888888888887777666554 567777
Q ss_pred HHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH------HHhcccCchhhHHHHHhhcChhhHHHHHHHHH---HHH
Q psy17412 134 KEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL------LHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR---AMH 204 (240)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~---~~~ 204 (240)
....++.++.++.+.-. |...-.+. ....++....++-..++..++.+..+|...-. ...
T Consensus 130 l~itkklld~DsrNyH~-----------W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~ 198 (328)
T COG5536 130 LFITKKLLDSDSRNYHV-----------WSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRF 198 (328)
T ss_pred HHHHHHHhcccccccce-----------eeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHH
Confidence 77778888888876543 32222222 22333444466666777778888777766522 222
Q ss_pred HcCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 205 NLGQ------REEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 205 ~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..|+ +++-+++.-..+-.+|++..+|..+.-+
T Consensus 199 ~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 199 NRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred hhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 3443 3445566666667788887777765543
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=88.61 E-value=7.8 Score=31.87 Aligned_cols=91 Identities=14% Similarity=0.047 Sum_probs=64.1
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+.+.......|+++......+..+...|+.+.|+..++..++ +..... ..-.++.+|.++....+|.+|-.
T Consensus 254 ~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~-------~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 254 KALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQV-------KSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444566788888888889999889998888888887776 332221 23447889999999999999999
Q ss_pred HHHHHhhcChhhHHHHHHHH
Q psy17412 181 DCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la 200 (240)
.+....+...-.--.|..++
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 99888776544333344444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=88.44 E-value=2 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=10.9
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
|..+-..+.+.|++++|.+.|++..
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334444444444444444444444
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.41 E-value=2 Score=30.36 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=41.6
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
+..++..++.++..|+ +.++..++.++...|+.++|.....++....|.+
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3445566677777775 7889999999999999999999999999999944
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.1 Score=24.43 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=21.5
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|++++|+.+|.+++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445566677777788888888888777664
|
; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E .... |
| >PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) | Back alignment and domain information |
|---|
Probab=88.02 E-value=3.7 Score=32.36 Aligned_cols=47 Identities=11% Similarity=-0.045 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
+..-+|+-+++.++...|.+......+..+|..+|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 44668999999999999999999999999999999999999999664
|
The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 []. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=87.61 E-value=9.9 Score=28.42 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHh----------------hcChhhHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKAL----------------RLDEDNMKAHLYKARA-MHNLGQREEAKEYIRELV 220 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l----------------~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~ 220 (240)
++.++..+|..+.+.|++.+|..+|-..- +-.|...+.+...+.+ |...|+...|...+....
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45669999999999999998887773321 1234445555555554 777899999998887777
Q ss_pred Hh
Q psy17412 221 EK 222 (240)
Q Consensus 221 ~~ 222 (240)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2561|consensus | Back alignment and domain information |
|---|
Probab=87.32 E-value=7.4 Score=31.20 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhccc---Cchhh-------HHHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY---DPVLP-------DCDKA 185 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~~A~~-------~~~~~ 185 (240)
.++..|.+.+....|++|+.++-.|-+.........+....+.+-+-..+.+||+.+.+. ..|.. .|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 345667778888899999888877755543332222344444455566777888887654 23333 33222
Q ss_pred hhc------------Chhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 186 LRL------------DEDN---MKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 186 l~~------------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.-. .|.. ...+..-|.+.+.+|+-++|.++++.+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 211 1221 234566788999999999999999988653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=87.13 E-value=2.9 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555556666666666666666666544
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=87.11 E-value=14 Score=29.75 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=97.0
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCc-------CchHHHHHHHHhcC---
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLY-------DPVLPDCDKALRLD--- 110 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~-------~~A~~~~~~~~~~~--- 110 (240)
.....+|...+-.++|+-|...|+.+.+....+ +.+.-..|.+.+..+.. +....+++.++...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 345668999999999999999999998866443 22333444555555533 24445555544221
Q ss_pred --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCchHHHHHhccCchHHHHHHHHHH--HHhcccCch
Q psy17412 111 --------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK--YPTRRKLAIEQVRDSPVLYTNRALTL--LHLQLYDPV 178 (240)
Q Consensus 111 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~~~A 178 (240)
.....+....+.++...|.+.+|...+-+.... ..+.... ..+-++-..|.++ ........-
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~------~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPF------GSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhH------hhHHHHHHHHHhhcccccCCCCcc
Confidence 122345666677788888888877776666554 2221100 0223355555555 111110000
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
..- .....--+..-|.-+...|+...|..+|.+++.....
T Consensus 363 ~~r-------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 363 LTR-------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred chh-------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 000 0112333445567789999999999999999987653
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=87.04 E-value=4.4 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=22.6
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQV 76 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 76 (240)
.+..+|...++.+++-.++-.|++|+...
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~s 31 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLS 31 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 34567888888888888888888887763
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=86.90 E-value=6.8 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=23.9
Q ss_pred HhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q psy17412 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL 93 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 93 (240)
..+.....+.+++..+..++.++..+..+..+|.+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 345677777777777777666666666666666543
|
|
| >KOG4279|consensus | Back alignment and domain information |
|---|
Probab=86.81 E-value=14 Score=32.02 Aligned_cols=172 Identities=13% Similarity=0.039 Sum_probs=98.2
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHH---HccCcCchHHHHHHHHhcC-cccH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLL---HLQLYDPVLPDCDKALRLD-EDNM 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~-~~~~ 114 (240)
.++...++-..|....+|+.-+++.+.. +.-|+. ..+.+..+.++. +-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3556666666777778888877776654 333432 112222222332 3467788888887777665 4445
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc-ccCchhhHHHH
Q psy17412 115 KAHLYKARAMHSL---------GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDK 184 (240)
Q Consensus 115 ~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~ 184 (240)
+.+...|.+|-.+ +..+.|+.+|+++++..|....- .+++.++...| .++...+.-.-
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG------------IN~atLL~aaG~~Fens~Elq~I 346 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG------------INLATLLRAAGEHFENSLELQQI 346 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc------------ccHHHHHHHhhhhccchHHHHHH
Confidence 6666677776433 55678999999999999974322 34444444333 34444443333
Q ss_pred HhhcCh-----hh---HHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 185 ALRLDE-----DN---MKAHLYKA---RAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 185 ~l~~~~-----~~---~~~~~~la---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
+++++. .. ..-|...| .+....+++.+|+..-+...++.|...-.
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 333321 00 11111111 12234578888988888888888765443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.8 Score=19.55 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
|..+-..|.+.|++++|...+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44455566666677777666665543
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=85.64 E-value=3.1 Score=24.36 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=22.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+..+...|...-..|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445666777777888888888888887765
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >KOG0687|consensus | Back alignment and domain information |
|---|
Probab=85.50 E-value=15 Score=28.39 Aligned_cols=101 Identities=10% Similarity=-0.020 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHH
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIE 153 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 153 (240)
..++.++|..|.+.|+-+.|.+.+.+..+..- +-.-....+|..|....-..+.++-.+..++...+...-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr--- 180 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR--- 180 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh---
Confidence 46778888888888888888888777654331 122244556666665555555555555555555443221
Q ss_pred hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 154 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
.......|...+...++.+|-..|..++.-
T Consensus 181 -----NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 181 -----NRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred -----hhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 112333455555566777777777666543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.64 E-value=22 Score=29.50 Aligned_cols=165 Identities=10% Similarity=-0.008 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 62 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 141 (240)
+.-......+.+... .+-.+++.++.||... ..++-...+++..+.+-++...-..++..|.. ++.+.+...|.+++
T Consensus 82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 333344444555443 3456777788888777 45555677777777777766666667766666 77788888888887
Q ss_pred HcCCC-chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC-hhhHHHH-HHHHHHHHHcCCHHHHHHHHHH
Q psy17412 142 EKYPT-RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAH-LYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 142 ~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~-~~la~~~~~~g~~~~A~~~~~~ 218 (240)
...-. .-..++ -.+|..+-.. -..+.+.-+....+.-+.. .....+. ...-.-|....++++|+..+..
T Consensus 159 yrfI~~~q~~~i------~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~ 230 (711)
T COG1747 159 YRFIPRRQNAAI------KEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKH 230 (711)
T ss_pred HHhcchhhhhhH------HHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 64322 100000 0112222110 0122222222222221111 1111222 2222345567889999999999
Q ss_pred HHHhCCCcHHHHHHHHHhh
Q psy17412 219 LVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 219 ~~~~~p~~~~~~~~l~~~~ 237 (240)
.++.+..+..++..+...+
T Consensus 231 il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 231 ILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HhhhcchhhhHHHHHHHHH
Confidence 9999888877777665544
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=84.16 E-value=20 Score=30.30 Aligned_cols=49 Identities=18% Similarity=0.054 Sum_probs=37.2
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
..+.|+++.|.++..++ ++..-|..+|.+....+++..|.++|.++...
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34566666666554443 55677899999999999999999999988543
|
|
| >PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane | Back alignment and domain information |
|---|
Probab=83.86 E-value=5.5 Score=25.76 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
..+|..+...|++++|..+|-+++...|.-.++...+.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 567777777888888888888888888776665555544
|
Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B. |
| >cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=83.45 E-value=4.2 Score=23.88 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=20.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|+|++|+.+|.++++.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555666666777777777777776654
|
This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear. |
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=83.22 E-value=17 Score=27.32 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=102.0
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC-----C-hHHHHHHHHHHHHccCcCchHHHHHHHHhc--CcccHHH--
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRD-----S-PVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKA-- 116 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-- 116 (240)
.++-++-.+.+..++|++-.+.|.+.+..-.. . ......+-..-....+.+--.+.|+..+.. +..+...
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF 145 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWF 145 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeee
Confidence 46667778899999999999999988765221 1 112222222222233333333444443321 1122223
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--
Q psy17412 117 --HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-- 191 (240)
Q Consensus 117 --~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-- 191 (240)
...+|.+++..|.|.+-.+.+++.-......... ....-.+...+|..-...|...++-.+-...|++++.....
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 3468999999998888777777665443222111 11222223344555566777777766666678888765432
Q ss_pred hHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 NMKA----HLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 ~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
++.+ .-.=|..+...|++++|-..|-++++..
T Consensus 226 HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 226 HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 1222 2233556788999999999888888764
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=83.08 E-value=12 Score=32.74 Aligned_cols=111 Identities=10% Similarity=0.043 Sum_probs=57.2
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHccCcCchHHHHHHHHhc-CcccHHHHHHHHHHHHHcCCHH
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRD-SPVLYTNRALTLLHLQLYDPVLPDCDKALRL-DEDNMKAHLYKARAMHSLGQRE 131 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~ 131 (240)
....+..-|+-|+.+-+.- ..+++ ...+....|...+..|++++|...|-+.+.. +|...--.+ ....+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~Ik 414 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQRIK 414 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHHHH
Confidence 3445555566666554332 11222 2446666777777777777777777777643 333221111 2222223
Q ss_pred HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 132 EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 132 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
+-..+++...+..-.+.+. -..|-.||.++++.++-.+..
T Consensus 415 nLt~YLe~L~~~gla~~dh-----------ttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDH-----------TTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHHHHHHHHHcccccchh-----------HHHHHHHHHHhcchHHHHHHH
Confidence 3344455555444333333 556667888888876544433
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=82.10 E-value=42 Score=30.91 Aligned_cols=25 Identities=8% Similarity=-0.174 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhh
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALR 187 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~ 187 (240)
..++.-+...+++-+|-+.+...+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4555566667777777776666554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=81.90 E-value=12 Score=24.73 Aligned_cols=62 Identities=27% Similarity=0.259 Sum_probs=38.4
Q ss_pred HHHHHH-HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 162 YTNRAL-TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 162 ~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+..+|. .....|+-++--+.+....+....++..+..+|.+|.+.|+..+|-+.+.++-+..
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344443 33445555544455555554445568899999999999999999999999887653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=81.73 E-value=4.5 Score=23.61 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|+|++|+++|..+++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 444555666666778888888888888765
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=81.62 E-value=5 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
.+...|.-+-..|++++|+.+|+++++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344455555566666666666665544
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=81.43 E-value=37 Score=29.86 Aligned_cols=157 Identities=8% Similarity=-0.070 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH---cCCHHHHHHHH
Q psy17412 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS---LGQREEAKEYV 137 (240)
Q Consensus 61 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~ 137 (240)
.-+.=+..++.-+.+++.+......+-.+.+..|+.++-...-..+.++.|..+..|.....-... .+...++...+
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 344556666666677777777777788888888888887777777777777777777665543332 35667777778
Q ss_pred HHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-------hHHHHHHHHHHHHHcCCHH
Q psy17412 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-------NMKAHLYKARAMHNLGQRE 210 (240)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~g~~~ 210 (240)
++++.-... ... ...-.......+.++...++++.....|.++++.-.. ....+..+...+...-..+
T Consensus 174 ekal~dy~~-v~i----w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~ 248 (881)
T KOG0128|consen 174 EKALGDYNS-VPI----WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQR 248 (881)
T ss_pred HHHhccccc-chH----HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHH
Confidence 887754322 111 0000111222233334456777777888887754321 2344444444555444445
Q ss_pred HHHHHHHHHHHh
Q psy17412 211 EAKEYIRELVEK 222 (240)
Q Consensus 211 ~A~~~~~~~~~~ 222 (240)
+-+.++...+..
T Consensus 249 qv~a~~~~el~~ 260 (881)
T KOG0128|consen 249 QVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHHHhc
Confidence 555555555443
|
|
| >PHA02537 M terminase endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.95 E-value=4.8 Score=29.33 Aligned_cols=91 Identities=15% Similarity=0.031 Sum_probs=54.1
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCCh------------HHHHHHHHHHHHccCcCch--HHHHHHHHh-c-CcccH--HHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSP------------VLYTNRALTLLHLQLYDPV--LPDCDKALR-L-DEDNM--KAHL 118 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~~~~~~A--~~~~~~~~~-~-~~~~~--~~~~ 118 (240)
+..|+|+.|++....+++.+-..| +-...-+......|+.-+. ...+..... . -|+.. ..+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 457999999999999999853221 1122233334445542221 111222211 1 14433 3455
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHHcCCCc
Q psy17412 119 YKARAMH---------SLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 119 ~la~~~~---------~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
..|..+. ..++...|+.++++++.++|+.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 6666663 4568889999999999999874
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=80.53 E-value=4.4 Score=18.65 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
|..+-..+.+.|++++|.+.|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455666777888888888888776543
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=80.52 E-value=10 Score=25.14 Aligned_cols=93 Identities=22% Similarity=0.203 Sum_probs=52.4
Q ss_pred HHHHHhHhHHH--HhCCHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 47 DHFKANGNKAF--QSGQYEAALVQYDKAIEQVRDSPVLYTNRAL-TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 47 ~~~~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+-.+|..+- .-|+...-+..|-..-. . . -+..+|. +....|+-++--+.+.....-...++..+..+|.+
T Consensus 55 ~~LdsIGkiFDis~C~NlKrVi~C~~~~n~---~-s-e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~A 129 (161)
T PF09205_consen 55 ETLDSIGKIFDISKCGNLKRVIECYAKRNK---L-S-EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANA 129 (161)
T ss_dssp HHHHHHGGGS-GGG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHH
T ss_pred HHHHHHhhhcCchhhcchHHHHHHHHHhcc---h-H-HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 34444555432 34666666666644311 1 1 2333443 44456666665566666665556678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q psy17412 124 MHSLGQREEAKEYVRQLVEKY 144 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~ 144 (240)
|.+.|+..++-+.+.+|-+..
T Consensus 130 y~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 130 YKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHhcchhhHHHHHHHHHHhc
Confidence 999999999999999988754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=80.50 E-value=28 Score=27.89 Aligned_cols=104 Identities=17% Similarity=0.085 Sum_probs=76.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh-----cCC-ChHHHHHHHHHHHHccCcCchHHHHHHHHhc----CcccH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ-----VRD-SPVLYTNRALTLLHLQLYDPVLPDCDKALRL----DEDNM 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~ 114 (240)
.+..|+.+...+-..|+...-...+...+.. +.. .+.....+-.+|...+.|+.|.....+..-- +...+
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A 247 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence 4567777777777788866655555554443 111 2445566778889999999998888776521 12446
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
...+.+|.+..-+++|..|.+++-+|+...|++.
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 6788899999999999999999999999999844
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.08 E-value=7.7 Score=27.36 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=38.9
Q ss_pred hHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 99 VLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 99 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
.++..++.+...| ++..+..++.++...|+.++|....+++..+.|.+
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3445556666666 56788899999999999999999999999999953
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 240 | ||||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 4e-09 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 1e-04 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 1e-07 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 3e-04 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 1e-07 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 4e-04 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 5e-07 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 2e-06 | ||
| 2if4_A | 338 | Crystal Structure Of A Multi-Domain Immunophilin Fr | 3e-06 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 5e-06 | ||
| 2bug_A | 140 | Solution Structure Of The Tpr Domain From Protein P | 7e-06 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 1e-05 | ||
| 2dba_A | 148 | The Solution Structure Of The Tetratrico Peptide Re | 3e-05 | ||
| 1qz2_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Compl | 7e-05 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 1e-04 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 1e-04 | ||
| 1p5q_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Lengt | 2e-04 | ||
| 2l6j_A | 111 | Tah1 Complexed By Meevd Length = 111 | 3e-04 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 3e-04 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 5e-04 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 6e-04 | ||
| 1kt0_A | 457 | Structure Of The Large Fkbp-like Protein, Fkbp51, I | 9e-04 | ||
| 1kt1_A | 457 | Structure Of The Large Fkbp-Like Protein, Fkbp51, I | 9e-04 |
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148 | Back alignment and structure |
|
| >pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336 | Back alignment and structure |
|
| >pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 | Back alignment and structure |
|
| >pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 5e-31
Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 4/184 (2%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ G K +GQ AL Q+ A++ D+ + Y RA L + LPD K
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP----TRRKLAIEQVRDSPVL 161
++L D A L + + G+ +EA++ +++++ P + + D
Sbjct: 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
++AL Y + DK L + + + +A G+ +A ++ +
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205
Query: 222 KYPT 225
Sbjct: 206 LKND 209
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 4e-22
Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 22/216 (10%)
Query: 39 RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL 95
K + + +A + G+ A+ A + D+ + + L
Sbjct: 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226
Query: 96 YDPVLPDCDKALRLDEDNMKAH------------LYKARAMHSLGQREEAKEYVRQLVEK 143
++ L + + L+LD+D+ + + A + G+ +A +++
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286
Query: 144 YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203
P+ + + + + C + L+++ DN+ A +A A
Sbjct: 287 EPSIAEYTVR-------SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339
Query: 204 HNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
+EA + E +++ E +A
Sbjct: 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-21
Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 19/219 (8%)
Query: 21 MNDFMRSVEID----AMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV 76
+DF + ++ + + + + + D ++ AF SG Y AA+ DK +E
Sbjct: 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173
Query: 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136
L RA + + D A +L DN +A + + LG E +
Sbjct: 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233
Query: 137 VRQLVEKYP------TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
VR+ ++ K + + A L+ Y + ++ +
Sbjct: 234 VRECLKLDQDHKRCFAHYKQVKKLNK-----LIESAEELIRDGRYTDATSKYESVMKTEP 288
Query: 191 DN----MKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
+++ + EA E+++ P
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 22/191 (11%), Positives = 57/191 (29%), Gaps = 49/191 (25%)
Query: 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP----VLYTNRALTLLHLQLYDPVLPD 102
+ + + + G+Y A +Y+ ++ + +
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
C + L+++ DN+ A +A A +EA +
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ--------------------------- 350
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222
D + A +E++ + +A L Q ++ Y V++
Sbjct: 351 ------------------DYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 223 YPTRRKLVENY 233
++++++ Y
Sbjct: 393 NAKKQEIIKAY 403
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 6e-14
Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
+ + + L LY + D + HL + + + GQ +A
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHA--- 51
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
A++ D+ + Y RA L + LPD K ++L D A L +
Sbjct: 52 --------AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 203 MHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQE 240
+ G+ +EA++ +++++ P+ + E +Q + +
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116
+ + A+ + ++ D+ +RA L ++YD + D + A +E++ +
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
Query: 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTR-------RKLAIEQVRDSPVLYTNRA 166
+A L Q ++ Y V++ + RKLA++ D+ +
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 422
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 8e-30
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 4/184 (2%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ G K +GQ AL Q+ A++ D+ + Y RA L + LPD K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP----TRRKLAIEQVRDSPVL 161
+ L D A L + + G+ +EA++ +++++ P + + D
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
++AL Y + DK L + + + +A G+ +A ++ +
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
Query: 222 KYPT 225
Sbjct: 183 LKSD 186
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 3e-21
Identities = 28/213 (13%), Positives = 70/213 (32%), Gaps = 22/213 (10%)
Query: 39 RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL 95
K + + +A + G+ A+ A + D+ + + L
Sbjct: 144 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203
Query: 96 YDPVLPDCDKALRLDEDNMKAH------------LYKARAMHSLGQREEAKEYVRQLVEK 143
++ L + + L+LD+D+ + + A + G+ +A +++
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Query: 144 YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203
P+ + + + + C + L+++ DN+ A +A A
Sbjct: 264 EPSVAEYTVR-------SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 204 HNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236
+EA + E +++ E +A
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-20
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 5/189 (2%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+ D ++ AF Y AA+ DK +E L RA + +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK-LAIEQVRDSPV 160
D A +L DN +A + + LG E + VR+ ++ ++ A +
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLD----EDNMKAHLYKARAMHNLGQREEAKEYI 216
A L+ Y + ++ + E +++ + EA
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295
Query: 217 RELVEKYPT 225
E+++ P
Sbjct: 296 SEVLQMEPD 304
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-14
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 49/166 (29%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAIE----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ + + G+Y A +Y+ ++ + + + C +
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
L+++ DN+ A +A A +EA +
Sbjct: 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQ------------------------------ 327
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREE 211
D + A +E++ + +A L Q ++
Sbjct: 328 ---------------DYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-12
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+++ HL + + + GQ +A V+ P D+ + Y RA L +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-----------DNYIAYYRRATVFLAM 50
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
LPD K + L D A L + + G+ +EA++ +++++ P
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-27
Identities = 32/117 (27%), Positives = 52/117 (44%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
+ A K GN+ F +Y A Y +AI + V YTNRAL L +Q +
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
L DC +AL LD ++KAH + + + +EA +++ +R + +
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 119
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-15
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AI + V YTNRAL L +Q + L DC +AL LD ++KAH + + + +
Sbjct: 35 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD 94
Query: 211 EAKEYIRELVEKYPT-RRKLVENYTQAFEQ 239
EA ++ R ++ A
Sbjct: 95 EAIANLQRAYSLAKEQRLNFGDDIPSALRI 124
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 7e-26
Identities = 32/111 (28%), Positives = 51/111 (45%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN+ F +Y A Y +AI + V YTNRAL L +Q + L DC +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
AL LD ++KAH + + + +EA +++ +R + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 9e-26
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 37 EERKARQDI--ADHFKANGNKAFQSGQYEAALVQYDKAIE---QVRDSPVLYTNRALTLL 91
E R A + + GN+ F+ G Y AL Y +A+ +D VL+ NRA L
Sbjct: 17 EPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL 76
Query: 92 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR--K 149
L+ YD + KA+ D ++KA +++A+ LG+ ++A +++ V P + +
Sbjct: 77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136
Query: 150 LAIEQVRDS 158
A+ +
Sbjct: 137 EALRNISGP 145
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 1e-13
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 101 PDCDKALRLDEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIE---QV 155
P + + + G A + Y A+
Sbjct: 13 PGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGA-------LAAY----TQALGLDATP 61
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+D VL+ NRA L L+ YD + KA+ D ++KA +++A+ LG+ ++A
Sbjct: 62 QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD 121
Query: 216 IRELVEKYP 224
++ V P
Sbjct: 122 LQRCVSLEP 130
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 4e-25
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 13/170 (7%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
AD KA GNK +++ Q++ A+ Y+KA E +D NRA Y+ + +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLND 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A+ + + +++ +G +++ +E Y S +
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ-----------KSLTEH-RT 111
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
A L L+ + L + ++ + + + + A +
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 9e-24
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 12/165 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G L K IE + S + A L L+ + L + ++ + +
Sbjct: 86 GNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+ + + A V+ Y I++ + Y+NRA L L + +
Sbjct: 145 EGKEYFTKSDWPNA-------VKAY----TEMIKRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
DC+KA+ D + ++A++ KA A + + A E + K
Sbjct: 194 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 3e-18
Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ A+ + G + F + A+ Y + I++ + Y+NRA L L + + DC
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+KA+ D + ++A++ KA A ++ + A E + K + +
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA-----------EVNNGSS 245
Query: 164 NRALTLLHLQLY 175
R + L+ +
Sbjct: 246 AREIDQLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-09
Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY 175
+ + Q +EA E+ + E + NRA Y
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHK------------DITYLNNRAAAEYEKGEY 54
Query: 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + A+ + + +++ +G +++ +E Y
Sbjct: 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-25
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
+ A+ K GN+ + +EAA+ Y KAIE + V + NRA L Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT------RRKL 150
+ DC++A+ +D KA+ A+ SL + EA Y ++ +E P K+
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 151 AIEQVRDSP 159
A ++R++P
Sbjct: 123 AELKLREAP 131
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 8e-15
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 110 DEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
+ED+ +A K + E A V Y + AIE + V + NRA
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAA-------VHFY-GK---AIELNPANAVYFCNRAA 54
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227
L Y + DC++A+ +D KA+ A+ +L + EA Y ++ +E P
Sbjct: 55 AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
Query: 228 KLVENYTQA 236
N A
Sbjct: 115 TYKSNLKIA 123
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 5e-25
Identities = 30/101 (29%), Positives = 44/101 (43%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ K GNKA G + AL Y +AI+ + VLY+NR+ Y D K
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+ L D K + KA A+ L + EEAK + ++
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 4e-14
Identities = 24/86 (27%), Positives = 35/86 (40%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AI+ + VLY+NR+ Y D K + L D K + KA A+ L + E
Sbjct: 30 AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQA 236
EAK E ++ +L E
Sbjct: 90 EAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 6e-25
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
A+ K N F++ YE A+ Y +AIE + + Y NR+L L + Y
Sbjct: 4 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
L D +A+ LD+ +K + +A + +LG+ A +V+ P
Sbjct: 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 6e-14
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AIE + + Y NR+L L + Y L D +A+ LD+ +K + +A + LG+
Sbjct: 39 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 98
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQA 236
A +V+ P + Y +
Sbjct: 99 AALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 7e-25
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 37 EERKARQD--IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
R A + +A K GN+ F+ G Y A+ Y++A+++ ++ +LY+NRA L L
Sbjct: 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+ L DCD +RLD +K ++ KA + ++ + +A+ ++ P+
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-14
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A+++ ++ +LY+NRA L L + L DCD +RLD +K ++ KA + + +
Sbjct: 39 AVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWS 98
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQA 236
+A+ + ++ P+ + E
Sbjct: 99 KAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 1e-24
Identities = 23/101 (22%), Positives = 40/101 (39%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+D K+ GN A +Y A+ Y +A+ +P+ +NRA ++ D +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
A +D KA A + + AKE + +E
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-13
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A+ +P+ +NRA ++ D + A +D KA A ++ +
Sbjct: 37 ALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK 96
Query: 211 EAKEYIRELVEKYPTR-----RKLVENYTQAFEQE 240
AKE + +E ++ +E + E+
Sbjct: 97 GAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-24
Identities = 24/100 (24%), Positives = 47/100 (47%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ + G + F + A+ Y + I++ + Y+NRA L L + + DC+K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
A+ D + ++A++ KA A ++ + A E + K
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-13
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 123 AMHSLGQREEAKEYVRQLVEKYPTRRKL---AIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+M + R E KEY + +P K I++ + Y+NRA L L + +
Sbjct: 1 SMKAEEARLEGKEYFTK--SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 58
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
DC+KA+ D + ++A++ KA A + + A E + K
Sbjct: 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 4e-24
Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 11/172 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
++ +Q+G +EAA + Q D+ + + + D A++ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+A+ GQ +EA E+ R + P D Y N A L+
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-----------DFIDGYINLAAALVAA 114
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + AL+ + D + LG+ EEAK + +E P
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-23
Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 19/198 (9%)
Query: 35 RFEE-----RKARQDIADHFKAN---GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR 86
FE + + D+ + FQ + + + AI+Q Y+N
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 87 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+ ALRL D + ++ A A+ + G E A + ++ P
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP- 132
Query: 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL 206
D + ++ L L + KA+ + A +
Sbjct: 133 ----------DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 207 GQREEAKEYIRELVEKYP 224
G+ A + + V P
Sbjct: 183 GEIWLAIHHFEKAVTLDP 200
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 4e-23
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 11/172 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN + GQ + A+ Y A+ D Y N A L+ + + AL+ + D
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ +LG+ EEAK + +E P + V ++N
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-----------NFAVAWSNLGCVFNAQ 182
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ +KA+ LD + + A++ + + A + P
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 4e-22
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
++ A+ Y +A+ + V++ N A L D + +A+ L A+
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
A A+ G EA++ A+ N A + +
Sbjct: 277 LANALKEKGSVAEAEDCYNT-----------ALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
KAL + + AH A + G+ +EA + +E + P
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 1e-21
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 14/172 (8%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D + + G+ E A Y KAIE + V ++N +
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+KA+ LD + + A++ + + A + A+ + V++
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-----------ALSLSPNHAVVHG 241
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
N A L D + +A+ L A+ A A+ G EA++
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-18
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 14/164 (8%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+H +GN A ++ G + A+ Y +AIE P Y N A L
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+ ALRL + + A G EEA R+ +E +P + ++
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----------EFAAAHS 343
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
N A L L +A+R+ A+ + +
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-15
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 11/142 (7%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
A ++ C + R + DN L + + + + + ++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
+ P Y+N + ALRL D + ++ A A
Sbjct: 62 QNP-----------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 203 MHNLGQREEAKEYIRELVEKYP 224
+ G E A + ++ P
Sbjct: 111 LVAAGDMEGAVQAYVSALQYNP 132
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-23
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D+A K GN+ FQ G Y A+ Y +AI++ LY+NRA L + L DC
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
++ ++L+ +K + KA A+ ++ +A + ++ ++
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-14
Identities = 18/90 (20%), Positives = 43/90 (47%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
AI++ LY+NRA L + L DC++ ++L+ +K + KA A+ +
Sbjct: 42 AIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 101
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQAFEQE 240
+A + ++ ++ + ++ + Y + +
Sbjct: 102 KAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 5e-23
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 11/165 (6%)
Query: 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 110
+ + G YE A + KAIE+ ++ + Y N A L + + L DKAL LD
Sbjct: 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87
Query: 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
A+ +EAK+ + A+ ++ L+ L+
Sbjct: 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEK-----------ALRAGMENGDLFYMLGTVLV 136
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
L+ LP +A+ L+E++ +A + N G +EA
Sbjct: 137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 9e-20
Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 14/172 (8%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ N A + E AL YDKA+E + Y + ++Y
Sbjct: 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+KALR +N + L Q + A Y+++ A+E +
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR-----------AVELNENDTEARF 163
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+ L + + D L D + A RE+A E
Sbjct: 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 8e-19
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 11/156 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN Y+ A ++KA+ ++ L+ L+ L+ LP +A+ L+E+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ +A + + G +EA EQ + N +T +
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAA-----------VTEQDPGHADAFYNAGVTYAYK 206
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
+ + L DKA+ + D+M A K H+
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 4e-14
Identities = 21/157 (13%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 63 EAALVQYDKAIEQVRDSPVLYTNRALTLL----HLQLYDPVLPDCDKALRLDEDNMKAHL 118
++ + + V + + + Y+ KA+ ++++ ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
A + S+ + E A + + A+E + Y + ++Y
Sbjct: 62 NFANLLSSVNELERALAFYDK-----------ALELDSSAATAYYGAGNVYVVKEMYKEA 110
Query: 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+KALR +N + L Q + A Y
Sbjct: 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY 147
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 5e-23
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ K GN F+ G Y A+ YD+ I +PV Y+N+A+ L+ L Y + C +
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
LR + + L + A V+ V +
Sbjct: 64 GLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEV 101
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-12
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
I +PV Y+N+A+ L+ L Y + C + LR + + L +
Sbjct: 30 LITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQ 88
Query: 211 EAKEYIRELVEKYPTRRKLVENYTQA 236
A ++ V + +L E Y ++
Sbjct: 89 GAVGSVQIPVVEVD---ELPEGYDRS 111
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 8e-23
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 12/189 (6%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
E+ K ++ +A + G F A KAIE + Y AL +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSYIYMALIMADRNDS 286
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
DKAL+LD +N + ++ + L ++A + + A E
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK-----------AKELDP 335
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216
++ Y A +D +A R + + + A + + ++A +
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395
Query: 217 RELVEKYPT 225
+E
Sbjct: 396 DLAIELENK 404
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 1e-21
Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 20/181 (11%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+DKA++ ++ +Y +R LQ YD D DKA LD +
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N+ ++ A + + ++ + + K+P ++P + A L
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-----------EAPEVPNFFAEILTDK 385
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMH---------NLGQREEAKEYIRELVEKY 223
+D L D A+ L+ ++ A + + EA + + +
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445
Query: 224 P 224
P
Sbjct: 446 P 446
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-21
Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 20/202 (9%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ + + G F Y+ A +DKA E ++ Y A +D
Sbjct: 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+A R + + + A + ++A + +E +Y
Sbjct: 362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN-----------KLDGIYV 410
Query: 164 NRALTLLH---------LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
A + ++ + +KA +LD + +A + A+ +EA
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470
Query: 215 YIRELVEKYPTRRKLVENYTQA 236
E + T + ++ T A
Sbjct: 471 LFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 3e-21
Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVL 100
++ + KA+ + + +E L + ++ + + + +
Sbjct: 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257
Query: 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
D KA+ L + +++Y A M E Y + A++ ++
Sbjct: 258 EDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDK-----------ALKLDSNNSS 305
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220
+Y +R LQ YD D DKA LD +N+ ++ A + + ++ + E
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365
Query: 221 EKYPT 225
K+P
Sbjct: 366 RKFPE 370
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-20
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 13/197 (6%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+ A K GN+ F++ +Y+ A+ Y+ A+E +++ PV Y+N + + + V+
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALE-LKEDPVFYSNLSACYVSVGDLKKVVE 60
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
KAL L D K L +A A LG+ +A + L L + S
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL--------SLNGDFNDASIEP 112
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
R L + D D A + A+ + + + +
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP---AKERKDKQENLPSVTSMASFFG 169
Query: 222 KYPTRRKLVENYTQAFE 238
+ NY ++ E
Sbjct: 170 IFKPELTF-ANYDESNE 185
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 28/202 (13%), Positives = 62/202 (30%), Gaps = 24/202 (11%)
Query: 36 FEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH--- 92
+ + + + F + E YD++ E ++ +N
Sbjct: 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD 206
Query: 93 ---------LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
+L++ L ++ +L E + + A E +++ +E
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266
Query: 144 YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203
+P Y AL + DKAL+LD +N + ++ +
Sbjct: 267 FPR------------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314
Query: 204 HNLGQREEAKEYIRELVEKYPT 225
L ++A + + E P
Sbjct: 315 FILQNYDQAGKDFDKAKELDPE 336
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+ A +KA + S A L + D + +++ L +
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK--L 486
Query: 120 KARAMHSLGQREEA 133
+A + ++
Sbjct: 487 QAITFAEAAKVQQR 500
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-21
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 14/175 (8%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD---KALRL 109
+ F++ Y A+ ++K + +SP +Y RA+ L YD D + +
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69
Query: 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169
+ Y + + GQ A + + A+++ +Y
Sbjct: 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQA-----------AVDRDTTRLDMYGQIGSYF 118
Query: 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + +K +R + K +A + + +A +++E P
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 9e-19
Identities = 24/174 (13%), Positives = 51/174 (29%), Gaps = 22/174 (12%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + GQ A+ QY A+++ +Y + + + +K +R
Sbjct: 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ K +A + + +A +++E P + + Y RA
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-----------NIYIGYLWRARANAAQ 189
Query: 173 QL---YDPVLPDCDKALRLDEDNMK--------AHLYKARAMHNLGQREEAKEY 215
P +K + + A+ Y A + +A
Sbjct: 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 6e-17
Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 17/176 (9%)
Query: 47 DHFKANGNKA---FQSGQYEAALV---QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVL 100
+ +A ++ +Y+ A Y + + + L+ +
Sbjct: 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94
Query: 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
A+ D + + ++ G A +Y+ + I P
Sbjct: 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK-----------QIRPTTTDPK 143
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216
++ + + Y K L L + +L++ARA +
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-15
Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 9/168 (5%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
G + G + A+ +K I P ++ + + Y
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQ---REEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
K L L + +L++ARA + + AK Y +L+E + +
Sbjct: 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA---PGGAKYKDELIE 222
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
A + L LD N KA + +
Sbjct: 223 ANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 7e-14
Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 8/142 (5%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
A L Y + +K ++ + +A + L + + A++ +E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKD----IE 61
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
Y + + + L+ + A+ D + +
Sbjct: 62 TY----FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 203 MHNLGQREEAKEYIRELVEKYP 224
+N G A +Y+ + +
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTT 139
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 14/116 (12%)
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N A + EA E +L K +SP +Y RA+ L
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-----------NSPYIYNRRAVCYYEL 50
Query: 173 QLYDPVLPDCD---KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
YD D + + + Y + + GQ A + + V++ T
Sbjct: 51 AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
A L Y + +K ++ + +A + L + + A++ I E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI----E 61
Query: 222 KYPTRRKLVENYTQAF 237
Y ++ + + F
Sbjct: 62 TYFSKVNATKAKSADF 77
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-21
Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 12/180 (6%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ AN + Y + L ++ + + +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
++ L ++++ A + +E ++ ++ A++ + P Y +R
Sbjct: 269 SINLHPTP-NSYIFLALTLADKENSQEFFKFFQK-----------AVDLNPEYPPTYYHR 316
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
LQ Y D KA L+ +N+ ++ A ++ G+ E++ + E K+PT
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 2e-21
Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 11/170 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ + KA++ + P Y +R LQ Y D KA L+ +
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N+ ++ A ++ G+ E++ + + K+P P + T A L
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-----------TLPEVPTFFAEILTDR 391
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222
+D + D A RL+E K H+ + +++
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 9e-21
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 12/186 (6%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
R++ A G F A V ++I + +P Y ALTL +
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-LHPTPNSYIFLALTLADKENSQEF 295
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
KA+ L+ + + ++ + L + AKE ++ A ++
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK-----------AQSLNPENV 344
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
Y A L + ++ + + A + + G + A +
Sbjct: 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404
Query: 220 VEKYPT 225
Sbjct: 405 KRLEEV 410
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-20
Identities = 24/196 (12%), Positives = 59/196 (30%), Gaps = 8/196 (4%)
Query: 47 DHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
++ ++ F Y+ A + KA ++ Y A L +
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT-----RRKLAIEQVRDS 158
++ + + A + G + A + +
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427
Query: 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
+++ T L + ++ + KA LD + +A + A+ + + +EA E +
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487
Query: 219 LVEKYPTRRKLVENYT 234
T + ++ T
Sbjct: 488 SAILARTMDEKLQATT 503
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 8e-20
Identities = 42/213 (19%), Positives = 70/213 (32%), Gaps = 13/213 (6%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
RQ A K GN F + + A+ Y AIE + PV Y+N + + + V
Sbjct: 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKV 78
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP------------TR 147
+ KAL + D+ KA L +A A SLG +A + L
Sbjct: 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNL 138
Query: 148 RKLAIEQVRDSPVLYTNRALTLLH-LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL 206
K A++ + ++ R +L D L + N ++ A A+ +
Sbjct: 139 NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198
Query: 207 GQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
+ + K + Y
Sbjct: 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 8e-17
Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 14/173 (8%)
Query: 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH--LQLYDPVLPDCDKALRLDE 111
+ S Y+ A A++++ + A LL +Y +L L E
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ A Y +A+ +++ + +PT P Y ALTL
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------------PNSYIFLALTLAD 288
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ KA+ L+ + + ++ + L + AKE ++ P
Sbjct: 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 3e-15
Identities = 23/188 (12%), Positives = 56/188 (29%), Gaps = 14/188 (7%)
Query: 47 DHFKANGNKAF---QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
++ A + G++ + +++ + P + T A L +D +
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR------- 156
D A RL+E K H+ + +++ + AI+ +
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE--KFNAAIKLLTKACELDP 459
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216
S A L ++ D + + + L + +A + ++
Sbjct: 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK--LQATTFAEAAKIQKRLRAD 517
Query: 217 RELVEKYP 224
+ K
Sbjct: 518 PIISAKME 525
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 27/158 (17%), Positives = 45/158 (28%), Gaps = 45/158 (28%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G + + L + A
Sbjct: 1 GSHMNGEPDIAQLKG--------------------------------LSPSQRQAYAVQL 28
Query: 120 KAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177
K R + EA +Y + +E P + PV Y+N + + +
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYAIELDP-----------NEPVFYSNISACYISTGDLEK 77
Query: 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
V+ KAL + D+ KA L +A A +LG +A
Sbjct: 78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-09
Identities = 22/172 (12%), Positives = 40/172 (23%), Gaps = 36/172 (20%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL----------------Y 96
G ++ A+ QYD A ++ + + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
+ + KA LD + +A + A+ + + +EA E + R
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED-----------SAILAR 493
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
T K LR D G
Sbjct: 494 TMDEKLQA--TTFAEAAKIQ-------KRLRADPIISAKMELTLARYRAKGM 536
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 9e-07
Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 2/104 (1%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+ I + ++ AA+ KA E S A L ++ D +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+ + L + +A + ++ + K
Sbjct: 484 LFEDSAILARTMDEK--LQATTFAEAAKIQKRLRADPIISAKME 525
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 128 GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 187
G + + QL L+ Q + V NR + ++ + A+
Sbjct: 1 GSHMNGEPDIAQLKG-------LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE 53
Query: 188 LDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
LD + + + + G E+ E+ + +E P
Sbjct: 54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-20
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN A++ ++ AL YDKA E + TN+A Y+ C+K
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 106 ALRLDEDNM-------KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
A+ + +N KA+ + + ++A + + + ++ T
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-09
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
A E + TN+A Y+ C+KA+ + +N + + A+A +G
Sbjct: 30 AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89
Query: 211 EAKEYIRELVEKY 223
+E ++ + Y
Sbjct: 90 FKEEKYKDAIHFY 102
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 6e-20
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D A K GN A++ +E A V YDKAIE + Y N+A + + + C
Sbjct: 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFC 65
Query: 104 DKALRLDEDNM-------KAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+KA+ + + KA A A ++ + + ++
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-09
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 110 DEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
+ A K A + E+A Y + AIE + Y N+A
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKA-------HVHY-DK---AIELDPSNITFYNNKAA 50
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223
+ + + C+KA+ + + + A+AM G + + + V+ +
Sbjct: 51 VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 4e-19
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 23 DFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-- 80
F ++ E M EE+ + + K G F+ G+Y+ AL+QY K + +
Sbjct: 128 SFEKAKESWEMN-SEEKL---EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF 183
Query: 81 -------------VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127
+ N A+ L LQ + + C+KAL LD +N K + A ++
Sbjct: 184 SNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV 243
Query: 128 GQREEAKEYVRQLVEKYPT 146
E A+ +++++ YP
Sbjct: 244 NDFELARADFQKVLQLYPN 262
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 6e-19
Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 14/190 (7%)
Query: 29 EIDAMRRFEERKARQDIADHFKA---NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTN 85
E D + + ++ A ++ Y +I + S L
Sbjct: 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLC 310
Query: 86 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+A TL + VL K L +D N+ + ++H G++ + LV+++P
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370
Query: 146 TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205
+ V + + L + K+ +D A + A +
Sbjct: 371 -----------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419
Query: 206 LGQREEAKEY 215
G+ ++A
Sbjct: 420 EGEHDQAISA 429
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 7e-16
Identities = 16/185 (8%), Positives = 50/185 (27%), Gaps = 11/185 (5%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+SG+ + + +++ + V + + L + K+ +D
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
A + A + G+ ++A A + + + Y + + L
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTT-----------AARLFQGTHLPYLFLGMQHMQL 454
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232
+ L + + N + A + + + + +
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 233 YTQAF 237
+ +
Sbjct: 515 WAATW 519
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 1e-15
Identities = 21/180 (11%), Positives = 54/180 (30%), Gaps = 4/180 (2%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G+++ A+ Y A + + + Y + + L + L + +
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+ + A + + + + + N L++YD +
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKK----TQSNEKPWAATWANLGHAYRKLKMYDAAI 536
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
++ L L ++ H A + A ++ E + P + +A E+
Sbjct: 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-15
Identities = 22/179 (12%), Positives = 46/179 (25%), Gaps = 18/179 (10%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + A + K+ + A + +D + A RL +
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+L+ LG A EY++ + P+L + +
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-----------YDPLLLNELGVVAFNK 488
Query: 173 QLYDPVLPDCDKALRL-------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ AL L ++ A L + A + + + +
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-13
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 14/175 (8%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVL---PDCDKALRL 109
G ++ A Y +A+ + L + L + +
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169
D +++ S E + S L +A TL
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-----------KSSDLLLCKADTL 315
Query: 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ VL K L +D N+ + ++H G++ + +LV+++P
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 9/191 (4%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 102
D G + A + ++ + R +L +D
Sbjct: 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDG-GIKLEASMCYLRGQVYTNLSNFDRAKEC 222
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
+AL +D +A + + L +E + V +L ++
Sbjct: 223 YKEALMVDAKCYEA--FDQLVSNHLLTADEEWDLVLKL------NYSTYSKEDAAFLRSL 274
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222
L + D ++ E + L KA + + + +++E
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
Query: 223 YPTRRKLVENY 233
P + +
Sbjct: 335 DPYNLDVYPLH 345
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-08
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVL-------YTNRALTLLHLQLYDPVLPDCDK 105
G AF + A+ + A+ V+ + + N L++YD + ++
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136
L L ++ H A A +
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITH 572
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-08
Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 9/190 (4%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
R + D+ + + A QY+ A +K ++ + + A
Sbjct: 73 RNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTG 131
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA-----KEYVRQLVEKYPTRRK 149
Y K L + A + L + A + + EK +
Sbjct: 132 DYARAKCLLTKE-DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190
Query: 150 LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209
+ ++ + R +L +D +AL +D +A + ++L
Sbjct: 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA--FDQLVSNHLLTA 248
Query: 210 EEAKEYIREL 219
+E + + +L
Sbjct: 249 DEEWDLVLKL 258
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 7e-19
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------------------VLY 83
+ + + GN+ F Y+ A+ Y A+ ++ LY
Sbjct: 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
N + L++ + L+ +E N KA +A+A + + +EA+E ++ L+
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126
Query: 144 YP 145
+P
Sbjct: 127 HP 128
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-13
Identities = 21/109 (19%), Positives = 45/109 (41%)
Query: 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
+A + L+ + +E R + LY N + L++ + L+ +E
Sbjct: 35 RDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94
Query: 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
N KA +A+A + +EA+E ++ L+ +P +V + +
Sbjct: 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 1e-18
Identities = 23/173 (13%), Positives = 43/173 (24%), Gaps = 11/173 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
NG + L +A V + + L+ +LP +A L
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ A +L + + Q A V +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIASHDGGKQA 356
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
L+ +LP +A L + + A L + + + P
Sbjct: 357 LETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 1e-18
Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 11/161 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
NG + L +A V + L+ +LP +A L
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ A + +L + + Q A V +
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIASNGGGKQA 322
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L + A L +
Sbjct: 323 LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 2e-18
Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 11/181 (6%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
++ + L +A + V + L+ +LP
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+A L + + A +L + + Q A V
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIA 212
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223
+ L+ +LP +A L + A L + + +
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272
Query: 224 P 224
P
Sbjct: 273 P 273
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 4e-18
Identities = 21/171 (12%), Positives = 42/171 (24%), Gaps = 11/171 (6%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ ++ +A L +A + V + L+ +LP
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
+A L + A +L + + Q A V
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIA 246
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
+ L+ +LP +A L + A + L +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 8e-18
Identities = 20/170 (11%), Positives = 41/170 (24%), Gaps = 11/170 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
+ + L +A V + L+ +LP +A L
Sbjct: 78 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ + A +L + + Q A + V +
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQ-----------AHGLTPEQVVAIASNGGGKQA 186
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
L+ +LP +A L + A L + + +
Sbjct: 187 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 9e-16
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 18/168 (10%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
+ + L +A + V + L+ +LP +A L
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ + A +L + + Q A V +
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIASNGGGRPA 458
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
L+ L D AL ++ A+ LG R A + +++L
Sbjct: 459 LESIVAQLSRPDPALAALTND------HLVALACLGGR-PALDAVKKL 499
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-14
Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 13/153 (8%)
Query: 62 YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121
+ AL + + V + L+ +LP +A L + A
Sbjct: 56 WRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 113
Query: 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181
+L + + Q A + V + L+ +LP
Sbjct: 114 GGKQALETVQRLLPVLCQ-----------AHGLTPEQVVAIASHDGGKQALETVQALLPV 162
Query: 182 CDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
+A L + + A L +
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-09
Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 12/177 (6%)
Query: 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 107
H + +G +A + A ++ + R ++ L
Sbjct: 7 HHQWSGARALE-ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPL 65
Query: 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
L + + A +L + + Q A V +
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLCQ-----------AHGLTPQQVVAIASHDG 114
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
L+ +LP +A L + + A L + + + P
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 1e-18
Identities = 20/184 (10%), Positives = 48/184 (26%), Gaps = 5/184 (2%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
FE + + G + A + ++ + + + + LT +
Sbjct: 11 PFEANNPYMYHENPMEE-GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE 69
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP----TRRKL 150
+ + A LD ++ H A + + A +R + P
Sbjct: 70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN 129
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
V + + Y AL ++ ++ + H + +
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189
Query: 211 EAKE 214
A
Sbjct: 190 SAAA 193
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 26/174 (14%)
Query: 60 GQYEAALVQYDKAIE---------------QVRDSPVLYTNRALTLLHLQLYDPVLPDCD 104
AAL + V + + Y
Sbjct: 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
AL ++ ++ + H + + A +R+ A+E D L+
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR-----------AVELRPDDAQLWNK 211
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
TL + L ++AL ++ ++ A + N+ Q + A + +
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-13
Identities = 20/183 (10%), Positives = 54/183 (29%), Gaps = 23/183 (12%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+Y A+E + L+ + + YD + +A+ L D
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ + + + + +EA + + A++ + N A++ ++
Sbjct: 205 DAQLWNKLGATLANGNRPQEALDAYNR-----------ALDINPGYVRVMYNMAVSYSNM 253
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN------------LGQREEAKEYIRELV 220
YD +A+ + +R + + + + + V
Sbjct: 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313
Query: 221 EKY 223
E +
Sbjct: 314 EPF 316
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 11/153 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G Y L++L L + + + +A
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+ A + A ++ A++ + + L
Sbjct: 61 LGLTQAENEKDGLAIIALNH-----------ARMLDPKDIAVHAALAVSHTNEHNANAAL 109
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L + +A ++
Sbjct: 110 ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY 175
+ + +M L EA + + P + + + LT +
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-----------EREEAWRSLGLTQAENEKD 71
Query: 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + A LD ++ H A + N A +R + P
Sbjct: 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-18
Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 9/163 (5%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G Q+G ++AA +D +E + NR + L + D + D +
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ L+ A L +++ + + + + ++ ++ +
Sbjct: 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHF--------EKSDKEQWGWNIVEFYLG-NISEQ 194
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
L + + D L E + + Y + +LG + A
Sbjct: 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-17
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 15/164 (9%)
Query: 58 QSGQYEAALVQYDKAIEQVR----DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 113
+ Q E L + ++ + + L R + L L D +AL + D
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 76
Query: 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ 173
+ Y + G + A E +E + NR + L +
Sbjct: 77 PEVFNYLGIYLTQAGNFDAAYEAFDS-----------VLELDPTYNYAHLNRGIALYYGG 125
Query: 174 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217
D + D ++ L+ A L +++ + +
Sbjct: 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-09
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 7/133 (5%)
Query: 10 LNLLPTFFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKA-------FQSGQY 62
P + ++ ++D + E K + +D + N +
Sbjct: 138 YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 197
Query: 63 EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122
E L L D A+ + N H Y
Sbjct: 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL 257
Query: 123 AMHSLGQREEAKE 135
+ LGQ ++
Sbjct: 258 ELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 14/137 (10%)
Query: 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL---QLYDPVLPDCDKAL 107
A Q + A + E+ + L ++ L + + D
Sbjct: 149 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 208
Query: 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
L E + + Y + SLG + A + A+ + V + L
Sbjct: 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKL-----------AVANNVHNFVEHRYALL 257
Query: 168 TLLHLQLYDPVLPDCDK 184
L L L + D+
Sbjct: 258 ELSLLGQDQDDLAESDQ 274
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-18
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ K N F++ YE A+ Y +AIE + + Y NR+L L + Y L D +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
A+ LD+ +K + +A + +LG+ A +V+ P
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 130 REEAKEYVRQLVEKYPTRRKL---AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186
+ +A +Y + + Y K AIE + + Y NR+L L + Y L D +A+
Sbjct: 10 KTQANDYFKA--KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 67
Query: 187 RLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235
LD+ +K + +A + LG+ A +V+ P + Y +
Sbjct: 68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 78.6 bits (195), Expect = 3e-18
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G ++G+Y A++ ++ + + + + + D +++L D
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N+K + + + A + + E + + + L +L
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIK-----------VAEANPINFNVRFRLGVALDNL 123
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+D + AL L + K H A + +G+ EEA +
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 8e-13
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G ++G + ++++ D+ + T LT + +Q YD +P K +
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
N A+ +LG+ +EA + + A+ + ++ A + +
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKI-----------ALGLRPNEGKVHRAIAFSYEQM 157
Query: 173 QLYDPVLPDCDKALRLDEDNMKA 195
++ LP KA LDE
Sbjct: 158 GRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 9e-13
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 11/138 (7%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYV 137
V Y ++ ++ Y + ++ D ++ L+ A G + E +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197
+ ++ D+ + T LT + +Q YD +P K + N
Sbjct: 66 ER-----------SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRF 114
Query: 198 YKARAMHNLGQREEAKEY 215
A+ NLG+ +EA +
Sbjct: 115 RLGVALDNLGRFDEAIDS 132
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 7e-06
Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 107 LRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA 166
+ D+ + K + G+ +A + Q+ + + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-----------FDVDVALHLG 49
Query: 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+ + D +++L DN+K + + + A
Sbjct: 50 IAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL 98
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 3e-18
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 16/121 (13%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP----------------VLYTN 85
+ A K GN+ F+ + A+V+Y +A++ + N
Sbjct: 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93
Query: 86 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
A + Y + K L++D++N+KA A G EEAKE + + P
Sbjct: 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153
Query: 146 T 146
Sbjct: 154 N 154
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-10
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
+EA ++ E + + S N A + Y + K L++D+
Sbjct: 62 KEALDFFIHTEEWDDQILLDKKKNIEIS--CNLNLATCYNKNKDYPKAIDHASKVLKIDK 119
Query: 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
+N+KA A G EEAKE + + P
Sbjct: 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 2e-17
Identities = 21/176 (11%), Positives = 43/176 (24%), Gaps = 11/176 (6%)
Query: 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118
+ L+Q A+ V + A L + + L L + +A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
R + + EA ++Q + P + P + L +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAP-----------EHPGIALWLGHALEDAGQAEAA 110
Query: 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234
+A +L + L ++ VE +
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 18/179 (10%), Positives = 43/179 (24%), Gaps = 14/179 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ G A + + + P Q + +A +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ L+ A+ GQ E A + A + + + P + L
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTR-----------AHQLLPEEPYITAQLLNWRRRL 138
Query: 173 ---QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228
+ D + A+ ++ + + Q A+ + +
Sbjct: 139 CDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAP 197
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-12
Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 11/137 (8%)
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
L A+R + A L A A +G + V++ + +P P
Sbjct: 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-----------GHP 57
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
Q + +A ++ L+ A+ + GQ E A
Sbjct: 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
Query: 220 VEKYPTRRKLVENYTQA 236
+ P +
Sbjct: 118 HQLLPEEPYITAQLLNW 134
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 2e-17
Identities = 27/197 (13%), Positives = 58/197 (29%), Gaps = 28/197 (14%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIE----------------QVRDSPVLYTNRALT 89
D + A ++GQ A+ + + I S L T AL
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 90 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149
+ YD + L+ +N+ A GQ ++A ++++
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA---- 119
Query: 150 LAIEQVRDSPVLYTNRALTLLH-LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
D+ + L K L A + +
Sbjct: 120 -------DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTR 172
Query: 209 REEAKEYIRELVEKYPT 225
E+A+ +++++ ++P+
Sbjct: 173 YEKARNSLQKVILRFPS 189
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-12
Identities = 17/141 (12%), Positives = 44/141 (31%), Gaps = 12/141 (8%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
++ Y+ A + Y + +++ ++ A + L +K L+L+ D
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 113 NMKAHLYKARAMHSLGQRE-EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
N+ A+++ + ++E + E + + L+ L
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT-----------KMQYARYRDGLSKLF 169
Query: 172 LQLYDPVLPDCDKALRLDEDN 192
Y+ K +
Sbjct: 170 TTRYEKARNSLQKVILRFPST 190
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 7/186 (3%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
+FEE +D F+ G + Q G A++ ++ A++Q + T +
Sbjct: 54 QFEEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE---KYPTRRKLA 151
+ + L L DN A + A + + + +A E +R + Y A
Sbjct: 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172
Query: 152 IEQVRDSPVLYTNRAL-TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR--AMHNLGQ 208
E + + + R L +LL L+ V A+RLD ++ + + G+
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232
Query: 209 REEAKE 214
++A +
Sbjct: 233 YDKAVD 238
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 4e-12
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 28/176 (15%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRAL---------------TLLHLQLYDPVLPDCD 104
A + L T +LL L+ V
Sbjct: 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205
Query: 105 KALRLDEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
A+RLD ++ + + G+ ++A + A+ + +L+
Sbjct: 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-----------ALSVRPNDYLLW 254
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
TL + + + +AL L +++ + NLG EA E+ E
Sbjct: 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-11
Identities = 24/197 (12%), Positives = 51/197 (25%), Gaps = 25/197 (12%)
Query: 31 DAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS--PVLYTNRAL 88
+ EE + + + + A+ S P + +
Sbjct: 167 HLVTPAEEGAGGAGLGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225
Query: 89 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR 148
YD + AL + ++ + + Q EEA R+
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR--------- 276
Query: 149 KLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL----------- 197
A+E N ++ ++L + + +AL + +
Sbjct: 277 --ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334
Query: 198 YKARAMHNLGQREEAKE 214
A+ LGQ +
Sbjct: 335 TLRLALSMLGQSDAYGA 351
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 27/174 (15%)
Query: 67 VQYDKAIEQVRDSPVLYTN-----------RALTLLHLQLY-DPVLPDCDKALRLDEDNM 114
+++++A + + A L Y D DK + +E+N
Sbjct: 1 MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60
Query: 115 ----KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
+ G A V++ P + T
Sbjct: 61 LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----------KHMEAWQYLGTTQA 109
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + L L DN A + A + N + +A E +R+ + P
Sbjct: 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 5e-09
Identities = 25/134 (18%), Positives = 49/134 (36%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G SG+Y+ A+ + A+ + +L+ TL + + + +AL L
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+++ + +LG EA E+ + + R E S +++ L L L
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343
Query: 173 QLYDPVLPDCDKAL 186
D + L
Sbjct: 344 GQSDAYGAADARDL 357
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 5e-17
Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 2/156 (1%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+++ A+ Y A + ++ + L +AL + ++
Sbjct: 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
G+ + A+++ +EK L N L+ Y L
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD--KWEPLLNNLGHVCRKLKKYAEAL 256
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+AL L N + +G E A +Y
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 6e-16
Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 28/198 (14%)
Query: 32 AMRRFEE-----RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLY 83
++ A Q + + + A + +A+ + P +
Sbjct: 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRL---------DEDNMKAHLYKARAMHSLGQREEAK 134
+ + AL + L + EA
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 194
+Y RQ + P + Y+ + ++ + AL L D+
Sbjct: 257 DYHRQALVLIP-----------QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305
Query: 195 AHLYKARAMHNLGQREEA 212
+ + EA
Sbjct: 306 SVTMLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 9e-15
Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 12/183 (6%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
E Q+ D + + + + ++ +E+ TL+ L
Sbjct: 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR-EEAKEYVRQLVEKYPTRRKLAIEQV 155
+ + K + L N + +G + E A+ Y+ + A
Sbjct: 73 NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK-----------ATTLE 121
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+ + + +D + A +L + LY + A+ +
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181
Query: 216 IRE 218
+
Sbjct: 182 FSQ 184
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-14
Identities = 21/176 (11%), Positives = 42/176 (23%), Gaps = 20/176 (11%)
Query: 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117
+ E A KA + + + +D + A +L +
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162
Query: 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177
LY + A+ + Q A+ + P + + +
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQ-----------ALSIAPEDPFVMHEVGVVAFQNGEWKT 211
Query: 178 VLPDCDKALRL---------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
AL + L + EA +Y R+ + P
Sbjct: 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-14
Identities = 20/214 (9%), Positives = 53/214 (24%), Gaps = 20/214 (9%)
Query: 32 AMRRFEE-----RKARQDIADHFKA---NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLY 83
F+ + H + + + K ++ +PV +
Sbjct: 34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW 93
Query: 84 TNRALTLLHL-QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
L + + KA L++ A + + + ++A
Sbjct: 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT--- 150
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
A + ++ + L +AL + ++
Sbjct: 151 --------AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202
Query: 203 MHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236
G+ + A+++ + +EK V
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-14
Identities = 18/158 (11%), Positives = 49/158 (31%), Gaps = 13/158 (8%)
Query: 60 GQY-EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118
G Y + + ++++ ++++ + + A + + + D +
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL-QLYDP 177
+ L + E +LV+ YP +PV + L + +
Sbjct: 61 VHIGTLVELNKANELFYLSHKLVDLYP-----------SNPVSWFAVGCYYLMVGHKNEH 109
Query: 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
KA L++ A + + + ++A
Sbjct: 110 ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 9e-07
Identities = 8/74 (10%), Positives = 25/74 (33%)
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
+++ ++++ + + A + + + D + + L +
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 211 EAKEYIRELVEKYP 224
E +LV+ YP
Sbjct: 74 ELFYLSHKLVDLYP 87
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 8e-17
Identities = 23/175 (13%), Positives = 54/175 (30%), Gaps = 14/175 (8%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ + Y A + A++ + + + RA +L++ D +AL + D
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 113 NMKAHLYKARAMHS-LGQREEAKEYVRQLVEKYPTRRKLAIEQV--RDSPVLYTNRALTL 169
+ + + + L + E+ Y + A+ + N+ +
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDK-----------ALADPTYPTPYIANLNKGICS 123
Query: 170 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ ++L A AR GQ +A Y ++ +
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-12
Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 18/185 (9%)
Query: 47 DHFKANGNKAF---QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLL-HLQLYDPVLPD 102
+ A +A + A + +A+ DS + N L L +
Sbjct: 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY 99
Query: 103 CDKALR--LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
DKAL A+L K GQ A+ Y+++ ++ P
Sbjct: 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR-----------SLAAQPQFPP 148
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA-RAMHNLGQREEAKEYIREL 219
+ A T + K E L + LG + A EY +L
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208
Query: 220 VEKYP 224
+P
Sbjct: 209 QANFP 213
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-16
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-----------------LYT 84
R AD K +GN F+ + E A+ QY+ AI + D + +
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
N A L+ L+ YD + C+ L +E N KA + +A LGQ + A++ R+ +
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Query: 145 PT 146
P
Sbjct: 295 PD 296
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 2e-16
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 11/172 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
N + G E A+ Y KA+E + ++N A L L +A+R+
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
A+ + + + A + + AI+ ++N A
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTR-----------AIQINPAFADAHSNLASIHKDS 124
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ AL+L D A+ A + + + E +++LV
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-15
Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 14/192 (7%)
Query: 39 RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL 95
RKA + + A+ N A Q G+ + AL+ Y +AI Y+N TL +Q
Sbjct: 33 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92
Query: 96 YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155
L +A++++ AH A G EA R A++
Sbjct: 93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT-----------ALKLK 141
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
D P Y N A L + + K + + D ++ + + H+ + +
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGF 201
Query: 216 IRELVEKYPTRR 227
+ + E++
Sbjct: 202 RKAIAERHGNLC 213
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 2e-13
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 11/147 (7%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYV 137
N A + + KAL + + AH A + G+ +EA +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197
++ AI Y+N TL +Q L +A++++ AH
Sbjct: 67 KE-----------AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Query: 198 YKARAMHNLGQREEAKEYIRELVEKYP 224
A + G EA R ++ P
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKP 142
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-06
Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 2/164 (1%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
AD + SG A+ Y A++ D P Y N A L + +
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYT 163
K + + D ++ + + H + + + + E++ I + P +
Sbjct: 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP 228
Query: 164 NRALTLLHLQLYDPVLPDCDK--ALRLDEDNMKAHLYKARAMHN 205
V D L + H +
Sbjct: 229 KDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFC 272
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 2e-16
Identities = 24/161 (14%), Positives = 40/161 (24%), Gaps = 11/161 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
N + L +A V + L+ +LP +A L
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
D + A +L + + Q A D V +
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASHGGGKQA 306
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L D + A L +
Sbjct: 307 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRL 347
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 3e-16
Identities = 25/174 (14%), Positives = 44/174 (25%), Gaps = 11/174 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
+ + L +A D V + L+ +LP +A L
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
D + A +L + + Q A D V +
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASHDGGKQA 340
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
L+ +LP +A L D + A L + + + P
Sbjct: 341 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 4e-16
Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 11/161 (6%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
NG + L +A D V + L+ +LP +A L +
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ A +L + + Q A V +
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQ-----------AHGLTPAQVVAIASHDGGKQA 645
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L D + A L +
Sbjct: 646 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 2e-15
Identities = 24/180 (13%), Positives = 44/180 (24%), Gaps = 11/180 (6%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
++ + L +A D V + L +LP +
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQ 522
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A L D + A +L + + Q A D V +
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASN 571
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
L+ +LP +A L + + A L + + + P
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 1e-14
Identities = 23/167 (13%), Positives = 41/167 (24%), Gaps = 11/167 (6%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+N + L +A D V + L+ +LP +
Sbjct: 497 VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A L D + A +L + + Q A + V +
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ-----------AHGLTQVQVVAIASN 605
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L + A L +
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRL 652
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 1e-14
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 11/153 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+ L + V + L+ +LP +A L D + A
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+L + + Q A D V + L+ +L
Sbjct: 503 NIGGKQALATVQRLLPVLCQ-----------AHGLTPDQVVAIASNGGGKQALETVQRLL 551
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
P +A L D + A L +
Sbjct: 552 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 584
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 1e-14
Identities = 25/161 (15%), Positives = 41/161 (25%), Gaps = 12/161 (7%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
N + L +A D V + L+ +LP +A L
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
D + A +L + + Q A D V +
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASNGGGKQA 374
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
L+ +LP +A L D + A L +
Sbjct: 375 LETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRL 414
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 5e-14
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 11/153 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+ L +A D V + L+ +LP + L + A
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
+L ++ + Q A D V + L +L
Sbjct: 469 HDGGKQALETVQQLLPVLCQ-----------AHGLTPDQVVAIASNIGGKQALATVQRLL 517
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
P +A L D + A L +
Sbjct: 518 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 550
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-13
Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 18/191 (9%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
++ + L +A D V + L+ +LP +
Sbjct: 633 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A L ++ + A +L + + Q A D V +
Sbjct: 693 AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ-----------AHGLTPDQVVAIASN 741
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
L+ +LP +A L A+ + ++A E ++ L+
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQ-------VVAIASNIGGKQALETVQRLLPVLCQ 794
Query: 226 RRKLVENYTQA 236
L A
Sbjct: 795 DHGLTLAQVVA 805
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 2e-11
Identities = 25/172 (14%), Positives = 43/172 (25%), Gaps = 14/172 (8%)
Query: 42 RQDIADHFKANGNKAFQS-GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVL 100
+ K G A ++ AL + V + L+ +L
Sbjct: 155 TGQLVKIAKRGGVTAMEAVHASRNAL--TGAPLNLTPAQVVAIASNNGGKQALETVQRLL 212
Query: 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160
P +A L + A +L + + Q A D V
Sbjct: 213 PVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ-----------AHGLPPDQVV 261
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
+ L+ +LP +A L D + A L +
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRL 313
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 2e-09
Identities = 22/186 (11%), Positives = 39/186 (20%), Gaps = 11/186 (5%)
Query: 27 SVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR 86
+V + +DI K A ++ V R
Sbjct: 105 AVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKR 164
Query: 87 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
++ L L + A +L + + Q
Sbjct: 165 GGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQ------- 217
Query: 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL 206
A V + L+ +LP +A L D + A L
Sbjct: 218 ----AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273
Query: 207 GQREEA 212
+
Sbjct: 274 ETVQRL 279
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 11/177 (6%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
+ L +A V + L+ +LP + L
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ------ 802
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
A+ S ++A E V++L+ L +QV V + L+ +L
Sbjct: 803 -VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQV----VAIASNIGGKQALETVQRLL 857
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236
P + L D + A L + + + + + +
Sbjct: 858 PVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGK 914
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 7e-05
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 6/163 (3%)
Query: 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118
+ + AL + + + L + + + L + L +
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQ 834
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
+ A+ S ++A E V++L+ L +QV V + L+ +
Sbjct: 835 DQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQV----VAIASNIGGKQALETVQRL 890
Query: 179 LPDCDKALRLDEDNMKAHLY--KARAMHNLGQREEAKEYIREL 219
LP + L D + A +A+ + + L
Sbjct: 891 LPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGL 933
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 5e-16
Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 24/192 (12%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
F +D F+ G K + G ++ + AI Q + +T +
Sbjct: 55 YFHTENPFKDWPGAFE-EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE 113
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154
+ + L L +N+KA + A + + +++A E ++ I+Q
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN-----------WIKQ 162
Query: 155 VRDSPVLYTNRALTLLHLQLYDP----------VLPDCDKALRLDEDNMKAHLYKAR--A 202
L N+ + + V +A + D + L
Sbjct: 163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222
Query: 203 MHNLGQREEAKE 214
H G+ A +
Sbjct: 223 FHLSGEFNRAID 234
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-13
Identities = 23/171 (13%), Positives = 45/171 (26%), Gaps = 23/171 (13%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDP----------VLPDCDKALRL 109
+ A I+Q L N+ + + V +A
Sbjct: 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206
Query: 110 DEDNMKAHLYKAR--AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167
+ D + L H G+ A + A+ + L+
Sbjct: 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA-----------ALTVRPEDYSLWNRLGA 255
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
TL + + + +AL + +++ + NLG EA
Sbjct: 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-12
Identities = 18/174 (10%), Positives = 51/174 (29%), Gaps = 19/174 (10%)
Query: 59 SGQYEAALVQYDKAIE----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN- 113
+ ++E A + E + + ++ + +K +N
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 114 ---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
+ G ++ + + P + +T
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-----------GDAEAWQFLGITQA 110
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + L L +N+KA + A + N +++A E ++ +++ P
Sbjct: 111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 9e-12
Identities = 19/194 (9%), Positives = 50/194 (25%), Gaps = 22/194 (11%)
Query: 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVL----YTNRALTLLHLQLYDPVLPDCDK 105
+ N Q Q + + +K ++P L L + +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEA 90
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A+ D + +A + + A +++ +E ++
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQR-----------CLELQPNNLKALMAL 139
Query: 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
A++ + ++ + K + + ++ L
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG---- 195
Query: 226 RRKLVENYTQAFEQ 239
+ E Y +A Q
Sbjct: 196 ---VKELYLEAAHQ 206
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 60 GQYEAALVQYDKAIEQVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117
E Y +A Q D P L T + ++ + + AL + ++
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW 250
Query: 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177
+ + + EEA E + A+E N ++ ++L Y
Sbjct: 251 NRLGATLANGDRSEEAVEAYTR-----------ALEIQPGFIRSRYNLGISCINLGAYRE 299
Query: 178 VLPDCDKALRLDEDNMKAHLYKARAMHN 205
+ + AL L + A+
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISG 327
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 39 RKARQDIADHFKAN-----GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL 93
+A D + G SG++ A+ ++ A+ + L+ TL +
Sbjct: 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG 260
Query: 94 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQ 139
+ + +AL + +++ + +LG EA
Sbjct: 261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 9e-16
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 16 FFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75
+ + F ++ E M E+ + + + G F+ G+Y A++QY K +
Sbjct: 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEK----GTVYFKGGKYMQAVIQYGKIVSW 297
Query: 76 VRDSP---------------VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120
+ + N A+ L L+ Y + CDKAL LD N K +
Sbjct: 298 LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR 357
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPT 146
A + + E AK +++E P
Sbjct: 358 GEAQLLMNEFESAKGDFEKVLEVNPQ 383
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 3e-10
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220
+ N A+ L L+ Y + CDKAL LD N K + A + + E AK +++
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Query: 221 EKYPT 225
E P
Sbjct: 379 EVNPQ 383
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-15
Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 9/182 (4%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G A ++ AL + + + N L+ +++ D+
Sbjct: 13 GVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69
Query: 113 NMKAHLYKARAMHSLGQREEA-KEYVRQLVEKYPTR----RKLAIEQVRDSPVLYTNRAL 167
A+ + + + + A K+ L++ + + L ++ + + N A
Sbjct: 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227
+ + A + + + + KA + E + + P R
Sbjct: 130 MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFR-PNER 188
Query: 228 KL 229
++
Sbjct: 189 QV 190
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 6/97 (6%), Positives = 24/97 (24%), Gaps = 14/97 (14%)
Query: 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY 175
+ + + A + + + + + N L+
Sbjct: 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSR--------------ICFNIGCMYTILKNM 53
Query: 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212
+++ D+ A+ + + + + A
Sbjct: 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-15
Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 16/183 (8%)
Query: 47 DHFKANGNKAF---QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
A+ A + + A +Y KA+ + + N L + Y+
Sbjct: 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128
Query: 104 DKALR--LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
+A + L + + + + +AKEY + ++ R+ P +
Sbjct: 129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK-----------SLRLNRNQPSV 177
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221
A L + Y P D + N ++ L R R+ A Y +L
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
Query: 222 KYP 224
YP
Sbjct: 238 LYP 240
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-13
Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 13/172 (7%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ H + + K + ++ Y L L + K
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRK 62
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
AL +D + AH A + + + A E R+ A+ + + N
Sbjct: 63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK-----------ALASDSRNARVLNNY 111
Query: 166 ALTLLHLQLYDPVLPDCDKALR--LDEDNMKAHLYKARAMHNLGQREEAKEY 215
L + Y+ +A + L + + + + +AKEY
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-15
Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 23/176 (13%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP----------- 101
+ G AL + + Y + + L
Sbjct: 46 ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
A R++ HL + LG+R++A+ ++Q A+ + D+P +
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ-----------ALA-LEDTPEI 153
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217
+ A L + D L KAL ++ + A A+ G+ EEA
Sbjct: 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 6e-15
Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 23/173 (13%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + + G+Y+AAL +++A+++ P A T L L L +P L + +
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 113 NMKAH-----------LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
+ + G E+A ++ A L
Sbjct: 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD-----------AERVNPRYAPL 120
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
+ R L L D +AL L+ D + A ++G+ +EA
Sbjct: 121 HLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA 172
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 6e-09
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 76 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKE 135
++ + + L L YD L ++AL+ + + +A + AR LG A E
Sbjct: 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60
Query: 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP-----------DCDK 184
+ + + Y + + L
Sbjct: 61 NGKT-----------LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109
Query: 185 ALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218
A R++ HL + LG+R++A+ +++
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 1e-04
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 11/112 (9%)
Query: 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
+ + L +++LG+ + A + A+++ P A T L
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFER-----------ALKENPQDPEALYWLARTQL 50
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222
L L +P L + + + ++ + A L ++ E +E + +E+
Sbjct: 51 KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-15
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 16/139 (11%)
Query: 23 DFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAI-------EQ 75
D DA ++ I++ K GN F+S +E A+ +Y K +
Sbjct: 200 DSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA 259
Query: 76 VRDSP---------VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126
D+ N L + + + C +AL +D N KA +A+
Sbjct: 260 AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG 319
Query: 127 LGQREEAKEYVRQLVEKYP 145
L + ++A +++ E P
Sbjct: 320 LKEYDQALADLKKAQEIAP 338
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-14
Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 18/201 (8%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPD 102
D + Q E A V ++KA+E+ +P + A+ L +
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
+A+RL+ DN + A +H + + E + +LVE+ A+E+ +
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE-------ALEKAPGVTDVL 250
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH-----LYKARAMHNLGQREEAKEYIR 217
+ A D + KAL +N H Y+A+ + RE R
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310
Query: 218 ELVEKYPTRRKLVENYTQAFE 238
+L+E V + +A E
Sbjct: 311 KLLELIG---HAVAHLKKADE 328
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-10
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 12/184 (6%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
+ + ++A+E+ + + A D + KAL +
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 113 NMKAH-----LYKARAMHSLGQREEAKEYVRQLVEKYP---TRRKLAIEQVRDSPVLYTN 164
N H Y+A+ + RE R+L+E K A E + + +
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL----YKARAMHNLGQREEAKEYIRELV 220
A Y+ K + + L Y ++ + ++A + E V
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399
Query: 221 EKYP 224
+
Sbjct: 400 KINQ 403
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-10
Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRD---------SPVLYTNRALTLLHLQLYDPVLPDC 103
GQ EAAL KA E ++ S V + N A H+ V
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 104 DKALRLDE--------DNMKAHLYKARAMHSLGQR--EEAKEYVRQLVEKYPTRRKLAIE 153
DK + E ++ + + G E AK + +EK P
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-------- 169
Query: 154 QVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL---- 206
+P + A+ L + +A+RL+ DN + A +H +
Sbjct: 170 ---KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226
Query: 207 GQREEAKEYIRELVEKYP 224
+ E ++ + E +EK P
Sbjct: 227 EEEGEGEKLVEEALEKAP 244
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 23/194 (11%), Positives = 46/194 (23%), Gaps = 28/194 (14%)
Query: 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYD 97
K Q + K A+ KA E + + + A Y+
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351
Query: 98 PVLPDCDKALRLDEDNMKAHL----YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIE 153
K + + L Y ++ + ++A + + V+
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK------- 404
Query: 154 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAK 213
+ LQ L + + +A A + ++A
Sbjct: 405 --------SREKEKMKDKLQKIA------KMRLSKNGADSEALHVLAFLQELNEKMQQAD 450
Query: 214 EYIR---ELVEKYP 224
E E P
Sbjct: 451 EDSERGLESGSLIP 464
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 105 KALRLDEDNMKAHLY--KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162
KA + A H GQ E A E +R+ E ++ A + S V +
Sbjct: 40 YRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ--QEHADQAEIRSLVTW 97
Query: 163 TNRALTLLHLQLYDPVLPDCDKALRLDE--------DNMKAHLYKARAMHNLGQR--EEA 212
N A H+ V DK + E ++ + + G E A
Sbjct: 98 GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERA 157
Query: 213 KEYIRELVEKYP 224
K + +EK P
Sbjct: 158 KVCFEKALEKKP 169
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 4e-14
Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 26/187 (13%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV---------LPDC 103
G ++ G +A + A+ ++ L N ++ L LQ +
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQA 202
Query: 104 DKALRLDEDNMKAHLYKARA--------MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155
A+++D + ++ A + ++A Q + +
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--------VDRKA 254
Query: 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215
+P L+ NRA + + Y L +A LD + + + + L + E
Sbjct: 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314
Query: 216 IRELVEK 222
+ K
Sbjct: 315 KGKTKPK 321
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 4e-12
Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 30/176 (17%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDP-VLPDCDKALRLDEDNMKAHL 118
+ E L Q ++ + + + L Y P KA++L+ + ++A
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
G A A+ ++ L N ++ L LQ
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSG-----------ALTHCKNKVSLQ-NLSMVLRQLQTDSGD 189
Query: 179 ---------LPDCDKALRLDEDNMKAHLYKARA--------MHNLGQREEAKEYIR 217
+ A+++D + ++ A N ++A
Sbjct: 190 EHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 3e-09
Identities = 33/232 (14%), Positives = 61/232 (26%), Gaps = 27/232 (11%)
Query: 30 IDAMRRFEE-----RKARQDIADHFKANGNKAF---QSGQY-EAALVQYDKAIEQVRDSP 80
D E+ + +A K + Y A V KA++ +
Sbjct: 78 QDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV 137
Query: 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ--REEAKEYVR 138
+ AL + N + + + L +E +V
Sbjct: 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVM 196
Query: 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL--------HLQLYDPVLPDCDKALRLDE 190
V + KLA++ + L + ++ L +A ++D
Sbjct: 197 DSVRQA----KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 191 ---DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
N HL +A EA E + P + + Q E
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 5e-08
Identities = 19/98 (19%), Positives = 34/98 (34%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ G S Q +A Q +K + +P L+ NRA + + Y L +
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143
A LD + + + + L + E + K
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPK 321
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 27/185 (14%), Positives = 46/185 (24%), Gaps = 22/185 (11%)
Query: 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLL--------HLQLYDPVLPD 102
+ S ++ Q A++ + L + ++ L
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 103 CDKALRLDE---DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
+A ++D N HL +A EA E Q A P
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ-----------AAALDPAWP 292
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
L L +L K +M L A R ++ +
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMT 352
Query: 220 VEKYP 224
+E P
Sbjct: 353 LELKP 357
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 4e-04
Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 12/105 (11%)
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP-VL 179
+ + E+ + + +++ + L Y P
Sbjct: 75 RKQQDVQEEMEKTLQQMEEVLGSAQ-----------VEAQALMLKGKALNVTPDYSPEAE 123
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
KA++L+ + ++A G A +
Sbjct: 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 60.9 bits (149), Expect = 4e-12
Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 11/140 (7%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ A+ Y KA+E S + N YD + KAL LD
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ +A A + G +EA EY ++ A+E S + N
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQK-----------ALELDPRSAEAWYNLGNAYYKQ 116
Query: 173 QLYDPVLPDCDKALRLDEDN 192
YD + KAL LD +
Sbjct: 117 GDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 11/133 (8%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
+ N YD + KAL LD + +A A + G +EA EY ++
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK--- 60
Query: 143 KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202
A+E S + N YD + KAL LD + +A A
Sbjct: 61 --------ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Query: 203 MHNLGQREEAKEY 215
+ G +EA EY
Sbjct: 113 YYKQGDYDEAIEY 125
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 6e-12
Identities = 36/221 (16%), Positives = 69/221 (31%), Gaps = 19/221 (8%)
Query: 8 PLLNLLPTFFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALV 67
P L + F +L + R + + R R + F +AAL
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 68 QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127
+ DS LL L D + K DED L A +
Sbjct: 123 TLHQG-----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177
Query: 128 GQR--EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185
G ++A +++ +K + +L +A + ++ +A
Sbjct: 178 GGEKLQDAYYIFQEMADKCS-----------PTLLLLNGQAACHMAQGRWEAAEGVLQEA 226
Query: 186 LRLDEDNMKAHLYKARAMHNLGQREEA-KEYIRELVEKYPT 225
L D + + + +LG+ E Y+ +L + + +
Sbjct: 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 3e-07
Identities = 16/142 (11%), Positives = 49/142 (34%), Gaps = 3/142 (2%)
Query: 6 QSPLLNLLPTFFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAA 65
S + L ++ + +++ +++ + A + A + + A
Sbjct: 128 DSLECMAMTVQILLKLDRL--DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 66 LVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125
+ + ++ + +L +A + ++ +AL D + + +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 126 SLGQREEA-KEYVRQLVEKYPT 146
LG+ E Y+ QL + + +
Sbjct: 246 HLGKPPEVTNRYLSQLKDAHRS 267
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 9e-12
Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G + +G Y ++ ++KAI+ + + + L +L+ Y+ + + + + ED
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72
Query: 113 NMKAHLY--KARAMHSLGQREEAKEYVRQLVEKYP 145
++ KA A+ + +E E +
Sbjct: 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 1e-10
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142
Y + Y + +KA++LD + K L K +A+++L + EEA V+
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA-------VD 61
Query: 143 KYPTRRKLAIEQVRDS--PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192
Y I + D ++ +A L +++ + + +L+ +
Sbjct: 62 CY----NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 13/118 (11%)
Query: 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT 168
+ + N + + + + G E+ + + AI+ + + +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEK-----------AIQLDPEESKYWLMKGKA 49
Query: 169 LLHLQLYDPVLPDCDKALRLDEDNMKAHLY--KARAMHNLGQREEAKEYIRELVEKYP 224
L +L+ Y+ + + + + ED ++ KA A+ + +E E +
Sbjct: 50 LYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 3e-11
Identities = 15/103 (14%), Positives = 31/103 (30%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 102
+D + A G +Q+G+++ A + + L LY+ L
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQS 74
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+D + + + A LG + A+
Sbjct: 75 YSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 5e-11
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 11/132 (8%)
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
L ED ++ + G+ ++A++ + L +
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----------YDARYFLG 57
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
L LY+ L +D + + + A LG + A+
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 225 TRRKLVENYTQA 236
+ +A
Sbjct: 118 AQPAHEALAARA 129
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-07
Identities = 22/146 (15%), Positives = 31/146 (21%), Gaps = 11/146 (7%)
Query: 69 YDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128
D+ +D LD + + L SLG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 129 QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188
E+A + + P + A L L D A L
Sbjct: 67 LYEQALQSYSY-----------GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
Query: 189 DEDNMKAHLYKARAMHNLGQREEAKE 214
ARA L K+
Sbjct: 116 AAAQPAHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 21/90 (23%), Positives = 25/90 (27%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A +F G G YE AL Y + P + A L L D
Sbjct: 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYS 111
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKE 135
A L ARA L K+
Sbjct: 112 ARALAAAQPAHEALAARAGAMLEAVTARKD 141
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-11
Identities = 13/103 (12%), Positives = 30/103 (29%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 102
D+ D + + G+ E A V + + A + +
Sbjct: 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL 92
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
A L +++ + + L +AKE +++
Sbjct: 93 YAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-10
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 11/120 (9%)
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
+ +D M A ++ G+ EEA+ + R L +
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----------YNVDYIMG 75
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
A + + A L +++ + + L +AKE +++
Sbjct: 76 LAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 4e-11
Identities = 26/189 (13%), Positives = 59/189 (31%), Gaps = 18/189 (9%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL-YDPVLP 101
D + + + E A AIE + ++ R + L LQ +
Sbjct: 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMN 153
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
+ N + ++ + L + E++ ++ + +
Sbjct: 154 YITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-----------KNYHA 202
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ------REEAKEY 215
+ +R + +L+D L D+ L+ D N + + N E +Y
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262
Query: 216 IRELVEKYP 224
E+++ P
Sbjct: 263 TLEMIKLVP 271
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 6e-11
Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120
+ IE+ + ++ +R + + L+ L L D N A ++
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV-- 178
+ + +YV QL+++ VR++ V R + + Y+
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKE----------DVRNNSVWN-QRYFVISNTTGYNDRAV 255
Query: 179 ----LPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + ++L N A Y + + G + + +L++ P
Sbjct: 256 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 304
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-07
Identities = 23/188 (12%), Positives = 54/188 (28%), Gaps = 29/188 (15%)
Query: 58 QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117
L + Q + + +R + +L+D L D+ L+ D N
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237
Query: 118 LYKARAMHSLGQ------REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ + + E +Y ++++ P + + +L
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP----------HNESAWNYLKG--ILQ 285
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYK--ARAMHNLGQR---------EEAKEYIRELV 220
+ ++ L L + +L ++ + +A E L
Sbjct: 286 DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345
Query: 221 EKYPTRRK 228
++ T RK
Sbjct: 346 KEKDTIRK 353
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 7e-10
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 23/126 (18%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------------VLYTNRALTLLHL 93
A ++ + +G+Y+ A +A+E P + A L L
Sbjct: 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70
Query: 94 QLYDPVLPDCDKALRLDEDN-----------MKAHLYKARAMHSLGQREEAKEYVRQLVE 142
+ +D L DKAL + A +A A+ LG+ EA +++VE
Sbjct: 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130
Query: 143 KYPTRR 148
R+
Sbjct: 131 MIEERK 136
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 3e-05
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTR-RKLAIEQVRDSPVLYTNRALTLLHLQLYD 176
L A+ G+ +EA R+ +E T + A + + A L L+ +D
Sbjct: 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74
Query: 177 PVLPDCDKALRLDEDN-----------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225
L DKAL + A +A A+ LG+ EA +++VE
Sbjct: 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134
Query: 226 RR 227
R+
Sbjct: 135 RK 136
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 9e-10
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 1/111 (0%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
FE + + G + A + ++ ++ + + + LT +
Sbjct: 7 PFEANNPYMYHENPMEE-GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE 65
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
+ + A LD ++ H A + + A +R + P
Sbjct: 66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-07
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172
+ + + +M L EA ++ + + + LT
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEA-----------VCQKEPEREEAWRSLGLTQAEN 64
Query: 173 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ + + A LD ++ H A + N A +R + P
Sbjct: 65 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-09
Identities = 16/85 (18%), Positives = 31/85 (36%)
Query: 63 EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122
+A + + + Q D+ +L T + +D LP AL D A + +
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 123 AMHSLGQREEAKEYVRQLVEKYPTR 147
+ G R A++ + +R
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSR 86
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190
+ E + ++ + D+ +L T + +D LP AL D
Sbjct: 2 QAITERLEAMLAQGT-----------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP 50
Query: 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226
A + + + G R A++ + +R
Sbjct: 51 TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-09
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVL---YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116
G A+ Y+KAI L Y T L Y ++ ++
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA 151
++ A +++LG+ E+ E + +++ + +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-06
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 127 LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL---YTNRALTLLHLQLYDPVLPDCD 183
LG +A Y + AI L Y T L Y
Sbjct: 3 LGLEAQAVPYYEK-----------AIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLA 51
Query: 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236
++ ++ ++ A ++NLG+ E+ E + +++ + + ++Y QA
Sbjct: 52 NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI-QSYKQA 103
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G+Y A ++Q + L A+ L +L Y+ + K + D+ Y
Sbjct: 41 GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100
Query: 120 KARAMH 125
K +A+
Sbjct: 101 K-QAIL 105
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 11/130 (8%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYV 137
+S + N YD + KAL LD +N +A A + G +EA EY
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 138 RQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197
++ A+E ++ + N YD + KAL LD +N +A
Sbjct: 67 QK-----------ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 198 YKARAMHNLG 207
A G
Sbjct: 116 NLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 3e-07
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
GN ++ G Y+ A+ Y KA+E ++ + N YD + KAL LD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 113 NMKAHLYKARAMHSLGQREEAKE 135
N +A A + G +EA E
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIE 98
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170
++ +A A + G +EA EY ++ A+E ++ + N
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQK-----------ALELDPNNAEAWYNLGNAYY 54
Query: 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
YD + KAL LD +N +A A + G +EA E
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-08
Identities = 15/104 (14%), Positives = 29/104 (27%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 102
D + + +QSG YE A + + + YD +
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 77
Query: 103 CDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
+D + + A + G+ EA+ + E
Sbjct: 78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-07
Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 11/132 (8%)
Query: 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164
+ D ++ A + G E+A + L +
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----------YDSRFFLG 60
Query: 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
+ YD + +D + + A + G+ EA+ + E
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 225 TRRKLVENYTQA 236
+ E T+
Sbjct: 121 NXPEFXELSTRV 132
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-07
Identities = 21/155 (13%), Positives = 34/155 (21%), Gaps = 11/155 (7%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119
G + E D+ + A Y+ LD + + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179
++GQ + A P + A LL
Sbjct: 61 LGACRQAMGQYDLAIHSYSY-----------GAVMDIXEPRFPFHAAECLLQXGELAEAE 109
Query: 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214
A L + + R L + KE
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKE 144
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 3e-04
Identities = 17/90 (18%), Positives = 24/90 (26%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
+ F G GQY+ A+ Y P + A LL
Sbjct: 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFL 114
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKE 135
A L + + R L + KE
Sbjct: 115 AQELIANXPEFXELSTRVSSMLEAIKLKKE 144
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 4e-06
Identities = 18/153 (11%), Positives = 43/153 (28%), Gaps = 22/153 (14%)
Query: 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC--------DKALR 108
A + ++ + +AL + P+ D +
Sbjct: 210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269
Query: 109 LDEDNMKAHLYKARAMHSL--GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA 166
L E N + +Y+ +A+ +L G+ +E+ + + I+ + S + Y
Sbjct: 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINT-----------GID-LEMSWLNYVLLG 317
Query: 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199
+ A L + +
Sbjct: 318 KVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-06
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL---QLYDPVLPDCDKALRL 109
G Y +L+ Y +A++ ++ LY A L + + DKAL L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
D + + A + A +A E +++++
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 7e-06
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 28/182 (15%)
Query: 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120
+++A +Y + + + Q + L +R + N +
Sbjct: 2 KWQAVRAEYQRQRDPLHQ-----------FASQQNPEAQLQALQDKIRANPQNSEQWALL 50
Query: 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL---QLYDP 177
+ RQ ++ ++ LY A L + +
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRG-----------ENAELYAALATVLYYQASQHMTAQ 99
Query: 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT---RRKLVENYT 234
DKAL LD + + A + A +A E +++++ R +LVE+
Sbjct: 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159
Query: 235 QA 236
A
Sbjct: 160 MA 161
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-05
Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 17/153 (11%)
Query: 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY 144
+ LL + L + L KA + Q E A+E + +
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI---- 66
Query: 145 PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 204
+ +D+ L L P L ++ L + DN + A +
Sbjct: 67 -------PLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN 119
Query: 205 NLGQREEAKEYIRELVEKYPT------RRKLVE 231
+G+ EEA E + +++ ++ ++
Sbjct: 120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 7e-05
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIE-QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 110
+ G E AL ++ ++ + Y L + L + A+ L+
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 111 EDNMKAHLYK 120
D+ K
Sbjct: 66 PDSPALQARK 75
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 8e-05
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 47 DHFKANGNK--AFQS-GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ +A N A+ G Y+ A+ Y KA+E ++ + N YD +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 104 DKALRLDEDNMKAHLYKARAMHSLG 128
KAL LD +N +A A G
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQKQG 91
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 29/187 (15%)
Query: 53 GNKAFQSGQYEAALVQYDKAIE---QVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKA 106
G F +Y A+ Y +A + V D + A H++ + +A
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167
Query: 107 LRLDEDNMKAHLYKARAMHSLG-------QREEAKEYVRQ---LVEKYPTRRKLAIEQVR 156
L + +++ + +++ + ++A ++ L R +AI
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI---- 223
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK-----ARAMHNLGQREE 211
N A + + KA ++ + + L K + + GQ ++
Sbjct: 224 ----SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK 279
Query: 212 AKEYIRE 218
A ++I E
Sbjct: 280 AFQFIEE 286
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 31/207 (14%), Positives = 65/207 (31%), Gaps = 31/207 (14%)
Query: 51 ANGNKAFQSGQYEAALVQYDKAIEQVRDSP------VLYTNRALTLLHLQLYDPVLPDCD 104
A + G +D +Q S + L + +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 105 KALRLDEDNMK--AHLYK--ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAI-EQVRDSP 159
A++ ++++ + +Y A LG +A +Y + L + + + D
Sbjct: 73 AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD---------LTLAKSMNDRL 123
Query: 160 ---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG-------QR 209
N TL + +D C++ L L + L + RA++NLG +
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ-LGDRLSEGRALYNLGNVYHAKGKH 182
Query: 210 EEAKEYIRELVEKYPTRRKLVENYTQA 236
+ + + + VE Y +
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQEN 209
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 23/212 (10%), Positives = 68/212 (32%), Gaps = 32/212 (15%)
Query: 30 IDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------VLY 83
+ + + + R G +Y +A+ + KA ++ +
Sbjct: 87 LLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFF 146
Query: 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM-------HSLGQREEAKEY 136
+ + +++ + +A + +++ ++ + L Q E+A +
Sbjct: 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH 206
Query: 137 VRQ---LVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193
++ + E + + N L Y+ +P +A+ + E++
Sbjct: 207 FQKAYSMAEAEKQPQLMGR--------TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES- 257
Query: 194 KAHLYKARAMHNL-------GQREEAKEYIRE 218
+A + G+ ++A EY +
Sbjct: 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 4e-04
Identities = 9/68 (13%), Positives = 23/68 (33%)
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYI 216
+ P A L L ++ + D D + + + + L + ++A +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 217 RELVEKYP 224
+ +E
Sbjct: 65 AQGIEVAR 72
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 4e-04
Identities = 10/68 (14%), Positives = 23/68 (33%)
Query: 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYV 137
+ P A L L ++ + D D + + + + L + ++A +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 138 RQLVEKYP 145
Q +E
Sbjct: 65 AQGIEVAR 72
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 100.0 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.98 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.97 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.95 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.95 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.95 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.94 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.93 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.93 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.93 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.92 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.91 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.9 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.9 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.9 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.9 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.89 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.89 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.89 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.89 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.89 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.88 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.87 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.87 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.87 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.86 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.86 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.85 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.85 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.85 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.85 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.85 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.84 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.84 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.84 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.84 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.83 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.83 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.82 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.81 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.81 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.81 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.81 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.81 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.81 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.8 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.8 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.79 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.78 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.78 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.78 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.77 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.77 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.77 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.77 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.76 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.76 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.76 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.75 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.73 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.73 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.73 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.73 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.72 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.72 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.72 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.72 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.72 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.71 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.69 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.69 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.69 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.68 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.68 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.68 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.64 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.64 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.61 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.59 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.53 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.53 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.52 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.51 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.51 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.5 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.5 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.48 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.47 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.46 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.4 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.4 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.38 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.35 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.34 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.26 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 99.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.15 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 99.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 99.11 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 99.1 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.1 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.07 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.02 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 99.01 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 99.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.78 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.76 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.37 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.29 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 98.24 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 98.12 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 98.06 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.94 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.78 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.62 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 97.61 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.36 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.3 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 97.29 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 97.19 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.05 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 97.01 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 97.0 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.92 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.86 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.86 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.81 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 96.61 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.48 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 96.28 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.19 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 96.19 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.87 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.78 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 95.43 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.38 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.12 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.95 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.27 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.41 | |
| 3ax2_A | 73 | Mitochondrial import receptor subunit TOM20 homol; | 91.38 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.34 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 90.08 | |
| 3t5v_B | 455 | Nuclear mRNA export protein THP1; PCI, mRNA nuclea | 88.95 | |
| 3ax2_A | 73 | Mitochondrial import receptor subunit TOM20 homol; | 86.82 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 86.65 | |
| 1om2_A | 95 | Protein (mitochondrial import receptor subunit TOM | 86.32 | |
| 3t5x_A | 203 | PCI domain-containing protein 2; PCI, mRNA nuclear | 85.12 | |
| 3t5v_B | 455 | Nuclear mRNA export protein THP1; PCI, mRNA nuclea | 84.19 | |
| 2v6y_A | 83 | AAA family ATPase, P60 katanin; MIT, VPS4, archaea | 83.25 | |
| 2ijq_A | 161 | Hypothetical protein; structural genomics, PSI, pr | 82.51 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 82.17 | |
| 1om2_A | 95 | Protein (mitochondrial import receptor subunit TOM | 80.58 | |
| 3t5x_A | 203 | PCI domain-containing protein 2; PCI, mRNA nuclear | 80.57 | |
| 4a5x_A | 86 | MITD1, MIT domain-containing protein 1; protein tr | 80.4 |
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=192.93 Aligned_cols=185 Identities=22% Similarity=0.238 Sum_probs=177.6
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
|.++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 123 AMHSL-----------GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 123 ~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
++..+ |++++|+..++++++++|+++.. +..+|.++...|++++|+..|+++++.+ +
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~-----------~~~lg~~~~~~g~~~~A~~~~~~al~~~-~ 149 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL-----------HLQRGLVYALLGERDKAEASLKQALALE-D 149 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHH-----------HHHHHHHHHHcCChHHHHHHHHHHHhcc-c
Confidence 99999 99999999999999999999888 9999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
++.++..+|.++..+|++++|+..|+++++.+|+++.++..++.++..
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL 197 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.9e-31 Score=183.55 Aligned_cols=174 Identities=16% Similarity=0.228 Sum_probs=168.3
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
+++..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 203 (240)
+...++++.|...+.+++...|.+... +..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~-----------~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADA-----------YYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHH-----------HHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 999999999999999999999998888 999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 204 HNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
..+|++++|+.+|+++++++|+++.
T Consensus 152 ~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999998754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=181.53 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=176.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVR-DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
.++..++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3468999999999999999999999999999998 888999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--hHHHHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--NMKAHLYKA 200 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la 200 (240)
++..+|++++|+..+++++++.|+++.. ......++..+|.++...|++++|+..|+++++.+|+ ++.++..+|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATI----EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHH----HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 9999999999999999999999998732 0111234999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCH---------------------------HHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 201 RAMHNLGQR---------------------------EEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 201 ~~~~~~g~~---------------------------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.++...|+. ++|+.+++++++++|+++.+...++++..
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999998 99999999999999999999998887754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=195.53 Aligned_cols=188 Identities=14% Similarity=0.165 Sum_probs=179.0
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC-cCchHHHHHHHHhcCcccHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL-YDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..|....++..+|.++...|++++|+..|++++..+|++..+|..+|.++..+|+ +++|+..|++++.++|++..+|+.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
+|.++..+|++++|+..|+++++++|++... |.++|.++...|++++|+.+++++++++|++..+|.++
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a-----------~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHA-----------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHH-----------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999999888 99999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCHHHH-----HHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 200 ARAMHN-LGQREEA-----KEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 200 a~~~~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|.++.. .|..++| +.+|++++.++|++..+|..++.++.+
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 999999 5554788 599999999999999999999987753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=207.31 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=168.1
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..|++++++.++|.++...|++++|+..|+++++.+|++..++.++|.++..+|++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
|.++..+|++++|+..|+++++++|++... +.++|.++...|++++|+..|+++++++|+++.++.++|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a-----------~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADA-----------HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 999999999999999999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 201 RAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
.++..+|++++|.+.+++++++.|+
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999999987654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=176.39 Aligned_cols=172 Identities=17% Similarity=0.130 Sum_probs=151.8
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-----------cCcCchHHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-----------QLYDPVLPDCDKA 106 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~ 106 (240)
.....|+.+.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..++++
T Consensus 31 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 110 (217)
T 2pl2_A 31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110 (217)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 107 LRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 107 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
++++|+++.++..+|.++..+|++++|+..|+++++++ +++.. +.++|.++...|++++|+..|++++
T Consensus 111 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 111 ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI-----------RSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH-----------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH-----------HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 87777 9999999999999999999999999
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 187 RLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 187 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
+.+|+++.++..+|.++..+|++++|+..|+++-.
T Consensus 179 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 179 EQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHSTTCHHHHHHHHHHHTC----------------
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999987653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=185.59 Aligned_cols=191 Identities=12% Similarity=0.116 Sum_probs=180.1
Q ss_pred HHHHhchhHHHHHHHhHhHHHHhCC-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 37 EERKARQDIADHFKANGNKAFQSGQ-YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
.....+|....+|..+|.++...|+ +++|+..|++++..+|++..+|+++|.++..+|++++|+..|+++++++|++..
T Consensus 122 ~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~ 201 (382)
T 2h6f_A 122 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH 201 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH
Confidence 3566789999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH-hcccCch-----hhHHHHHhhcC
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH-LQLYDPV-----LPDCDKALRLD 189 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~~l~~~ 189 (240)
+|+.+|.++..+|++++|+.+++++++++|++... |.++|.++.. .|.+++| +.++.++++++
T Consensus 202 a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a-----------~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 202 AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV-----------WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999888 9999999999 5665888 59999999999
Q ss_pred hhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 190 EDNMKAHLYKARAMHNLG--QREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
|++..+|.+++.++...| ++++|++.+.++ ..+|+++.++..++.++.+
T Consensus 271 P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 271 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 999999999999999988 699999999998 9999999999998887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-27 Score=181.21 Aligned_cols=200 Identities=21% Similarity=0.178 Sum_probs=135.8
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.....|..+..+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 59 a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHH
T ss_pred HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34556778888888888888888888888888888888888888888888888888888888888888888777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcc
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
..+|.++..+|++++|+..|+++++..|++... ++...|..+..+..+|.++...|+
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 777777777777777777777777777765433 222334444555555555555555
Q ss_pred cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 175 YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+++|+..+.++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++
T Consensus 219 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555554443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=191.90 Aligned_cols=187 Identities=14% Similarity=0.056 Sum_probs=179.7
Q ss_pred HhchhHHHHHHHhHhHHHHhCCH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQY-EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
...+..+..++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+ ..++.
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 174 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQ 174 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHH
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHH
Confidence 34567899999999999999999 99999999999999999999999999999999999999999999999999 69999
Q ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh--------cccCchhhH
Q psy17412 119 YKARAMHSL---------GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL--------QLYDPVLPD 181 (240)
Q Consensus 119 ~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~ 181 (240)
.+|.++..+ |++++|+..++++++++|++... +..+|.++... |++++|+..
T Consensus 175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS-----------WYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 999999999 99999999999999999998888 99999999999 999999999
Q ss_pred HHHHhhcCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 182 CDKALRLDE---DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 182 ~~~~l~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|+++++.+| +++.++..+|.++..+|++++|+..|+++++++|+++.++..++.++.
T Consensus 244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999999998888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=182.18 Aligned_cols=200 Identities=18% Similarity=0.126 Sum_probs=166.5
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|..+..+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 44567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhccc
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQLY 175 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~~ 175 (240)
.+|.++...|++++|+..++++++..|+++.. ++...|.++..+..+|.++...|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 88888888888888888888888888877654 2344566667788888888888888
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..++.++.
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888887764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=170.90 Aligned_cols=189 Identities=17% Similarity=0.145 Sum_probs=179.8
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.....|.....+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++
T Consensus 49 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 128 (243)
T 2q7f_A 49 AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128 (243)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
..+|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|++..++.
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAVELNENDTEA-----------RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCccHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 999999999999999999999999999998777 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+|.++...|++++|+.+++++++.+|+++.++..++.+.
T Consensus 198 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=181.94 Aligned_cols=189 Identities=12% Similarity=0.038 Sum_probs=143.2
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|..+.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|++...+.
T Consensus 92 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (365)
T 4eqf_A 92 ILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVK 171 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--
T ss_pred HHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHh
Confidence 34456666667777777777777777777777777777766666777777777777777777777777766666554444
Q ss_pred HH----------HHHHHHcCCHHHHHHHHHHHHHcCCC--chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 119 YK----------ARAMHSLGQREEAKEYVRQLVEKYPT--RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 119 ~l----------a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
.+ |.++...|++++|+..++++++..|. ++.. +..+|.++...|++++|+..+++++
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~al 240 (365)
T 4eqf_A 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL-----------QTGLGVLFHLSGEFNRAIDAFNAAL 240 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHH-----------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33 66666667777777777777776666 4444 9999999999999999999999999
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 187 RLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 187 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.+|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..++.++.
T Consensus 241 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 241 TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=169.24 Aligned_cols=183 Identities=19% Similarity=0.282 Sum_probs=173.5
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHccCcCchHHHHHHHHh--------
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-------PVLYTNRALTLLHLQLYDPVLPDCDKALR-------- 108 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------- 108 (240)
..+..+..+|.++...|++++|+..++++++..|+. +.++..+|.++...|++++|+..+++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHH
Confidence 678899999999999999999999999999998876 68999999999999999999999999998
Q ss_pred ------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHH
Q psy17412 109 ------------------LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL 170 (240)
Q Consensus 109 ------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 170 (240)
.+|.++.++..+|.++...|++++|+..++++++..|.++.. +..+|.++.
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~l~~~~~ 184 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-----------YSNRAAALA 184 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHH-----------HHHHHHHHH
Confidence 778888999999999999999999999999999999998777 999999999
Q ss_pred HhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHhh
Q psy17412 171 HLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY------PTRRKLVENYTQAF 237 (240)
Q Consensus 171 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 237 (240)
..|++++|+..++++++.+|+++.++..+|.++..+|++++|+.+++++++++ |.+..++..+.+++
T Consensus 185 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999 99999999888765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=170.04 Aligned_cols=196 Identities=18% Similarity=0.186 Sum_probs=179.4
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-------HH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-------MK 115 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~ 115 (240)
+..+..+..+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|.. +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3467899999999999999999999999999999 889999999999999999999999999999998876 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------HHHhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
++..+|.++...|++++|+..+++++++.|..... .+...|..+.++..+|.++...|++++|+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999988763211 222445567789999999999999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
.++++++.+|+++.++..+|.++...|++++|+.+++++++.+|+++.++..++.++.+
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=164.53 Aligned_cols=182 Identities=18% Similarity=0.083 Sum_probs=115.2
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-cCcCchHHHHHHHHh--cCcccHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-QLYDPVLPDCDKALR--LDEDNMKA 116 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~ 116 (240)
...|.....+..+|.++...|++++|+..+++++...|.+..++..+|.++... |++++|+..+++++. ..|....+
T Consensus 36 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 115 (225)
T 2vq2_A 36 KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA 115 (225)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHH
T ss_pred HhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHH
Confidence 344555666666666666666666666666666666666666666666666666 666666666666666 44555566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh-hhHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-DNMKA 195 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~ 195 (240)
+..+|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..| .+...
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA-----------FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 6666666666666666666666666666665554 66666666666666666666666666666 66666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
+..++.++...|+.++|..+++.+.+.+|+++.+...
T Consensus 185 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 185 LLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6666666666666666666666666666666655443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=174.64 Aligned_cols=198 Identities=16% Similarity=0.069 Sum_probs=139.2
Q ss_pred hchhHHHHHHHhHhHHHHhC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSG-QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..|..+..+..+|.++...| ++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++..++..
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 34445555555555555555 55555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhc---------cCchHHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQV---------RDSPVLYTNRAL 167 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~---------~~~~~~~~~la~ 167 (240)
+|.++...|++++|+..++++++..|++... ++... +..+.++..+|.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 5555555555555555555555555554333 11111 344567999999
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++...|++++|+..++++++.+|++..++..+|.++..+|++++|+.+|+++++.+|+++.++..++.+++
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=171.53 Aligned_cols=191 Identities=14% Similarity=0.123 Sum_probs=167.8
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc---cH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED---NM 114 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~ 114 (240)
..+..+..++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.++...|++++|+..|+++++..|+ .+
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456788999999999999999999999999999999998 889999999999999999999999999999874 46
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCchHHH------HHhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 115 KAHLYKARAMHS--------LGQREEAKEYVRQLVEKYPTRRKLA------IEQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 115 ~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
.+++.+|.++.. +|++++|+..|+++++..|+++... ..........++.+|.++...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 789999999999 9999999999999999999986550 00001111223899999999999999999
Q ss_pred HHHHHhhcChh---hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 181 DCDKALRLDED---NMKAHLYKARAMHNL----------GQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 181 ~~~~~l~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
.|+++++..|+ .+.+++.+|.++..+ |++++|+..|+++++.+|+++.+..
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999998 678999999999977 9999999999999999999965433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=172.72 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=160.1
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc-----
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED----- 112 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----- 112 (240)
.....|..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.
T Consensus 90 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 169 (368)
T 1fch_A 90 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 169 (368)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 445678888999999999999999999999999999999999999999999999998888888888777765543
Q ss_pred ----------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 113 ----------------------------------------------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 113 ----------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.+.++..+|.++...|++++|+..++++++..|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp C---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 4566777777777777777777777777777777
Q ss_pred chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
++.. +..+|.++...|++++|+..++++++.+|+++.++..+|.++..+|++++|+.+|++++.+.|++
T Consensus 250 ~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 250 DYLL-----------WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp CHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred CHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6666 88899999999999999999999999889888889999999999999999999999999888877
Q ss_pred -----------HHHHHHHHHhhh
Q psy17412 227 -----------RKLVENYTQAFE 238 (240)
Q Consensus 227 -----------~~~~~~l~~~~~ 238 (240)
..++..++.++.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHH
T ss_pred CCccccccchhhHHHHHHHHHHH
Confidence 778888877654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-26 Score=171.11 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=186.9
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-CcCchHHHHHHHHhcCcccHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
.....|.....+..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+..+++++..+|.++.+
T Consensus 48 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 127 (330)
T 3hym_B 48 VMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127 (330)
T ss_dssp HHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHH
T ss_pred HHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHH
Confidence 445678888899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhc
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~ 173 (240)
+..+|.++...|++++|+..++++++..|++... ++...|.++.++..+|.++...|
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999986554 34556778899999999999999
Q ss_pred ccCchhhHHHHHhhcC---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 174 LYDPVLPDCDKALRLD---------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 174 ~~~~A~~~~~~~l~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++++|+..++++++.. |..+.++..+|.++...|++++|+.+++++++.+|+++.++..++.++.
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 9999999999999886 6667899999999999999999999999999999999999999998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-26 Score=166.29 Aligned_cols=184 Identities=17% Similarity=0.097 Sum_probs=156.8
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh--cCcccHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR--LDEDNMKA 116 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 116 (240)
....+..+..+..+|.++...|++++|++.|+++++.+|.+..++..+|.++...|++++|+..+++++. ..|.+..+
T Consensus 64 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 143 (252)
T 2ho1_A 64 LEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143 (252)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHH
Confidence 3446677888888888888888888888888888888888888888888888888888888888888888 77778888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+..+|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|.+...+
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV-----------ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 8888888888888888888888888888887666 88888888888999999999998888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
..++.++...|++++|..+++++++.+|+++..+..+
T Consensus 213 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 213 LLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 8888888889999999999999888888888776544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-25 Score=161.99 Aligned_cols=187 Identities=19% Similarity=0.129 Sum_probs=176.9
Q ss_pred hchhH-HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 41 ARQDI-ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 41 ~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
.+|.. +..++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 44544 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVE--KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
+|.++...|++++|+..++++++ ..|.+... +..+|.++...|++++|+..++++++..|.+..++.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV-----------FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999 77776666 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+|.++...|++++|+.++++++...|.+...+..++.++.
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=167.81 Aligned_cols=185 Identities=21% Similarity=0.208 Sum_probs=158.8
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 203 (240)
+...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|++..++..+|.++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDL-----------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHH-----------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 999999999999999999999998777 999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 204 HNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
...|++++|+..+++++...|+++.++..++.++.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=176.53 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=168.5
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHH----------HHHHHHccCcCchHHHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR----------ALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~~~ 107 (240)
.....|..+.++..+|.++...|++++|+..|+++++..|++...+..+ |.++...|++++|+..+++++
T Consensus 125 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3455788899999999999999999999999999999999876666555 999999999999999999999
Q ss_pred hcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 108 RLDED--NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 108 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
...|. ++.++..+|.++...|++++|+..++++++..|+++.. +..+|.++...|++++|+..|+++
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL-----------WNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999 89999999999999999999999999999999998877 999999999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHhhh
Q psy17412 186 LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT------------RRKLVENYTQAFE 238 (240)
Q Consensus 186 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~ 238 (240)
++.+|+++.++..+|.++..+|++++|+.+|++++++.|+ +..++..++.++.
T Consensus 274 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 3567777777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-26 Score=161.96 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=157.6
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHH----------------HHHHHHHccCcCchHHHHHHHHh
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTN----------------RALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
.++.++..|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc--cCchhhHHHHHh
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL--YDPVLPDCDKAL 186 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~l 186 (240)
++|+++.++..+|.++..+|++++|+..|+++++++|+++.. +.++|.++...|+ ...+...+.+++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a-----------~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA-----------NIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999888 9999999987654 456677788877
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 187 RLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 187 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
...|. ..+++.+|.++...|++++|+.+|+++++++|+.. ....+.++
T Consensus 152 ~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 152 SPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred CCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 65554 34678899999999999999999999999999753 44455554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=171.32 Aligned_cols=189 Identities=22% Similarity=0.286 Sum_probs=146.7
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
+++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCC---CchHH-----------------------------------HHHhccCchHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYP---TRRKL-----------------------------------AIEQVRDSPVLYTNRA 166 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~---~~~~~-----------------------------------~~~~~~~~~~~~~~la 166 (240)
...|++++|+..++++++..| ++... ++...|..+.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 65544 1222344455555555
Q ss_pred HHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++.+|+++..+..+
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555544433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=171.09 Aligned_cols=193 Identities=17% Similarity=0.120 Sum_probs=180.5
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHH--------------------------------------HHHhccC--chHHHHHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKL--------------------------------------AIEQVRD--SPVLYTNR 165 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------------------~~~~~~~--~~~~~~~l 165 (240)
..|++++|+..++++++..|.+... ++...|. .+.++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 9999999999999999999876533 2334455 67889999
Q ss_pred HHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++++..+|+++.++..++.++.
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=167.56 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=159.4
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----HHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----MKAHLYK 120 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l 120 (240)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999998 4333 4458999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
|.++...|++++|+..++++++.+|.+... +..+|.++...|++++|+..++++++.+|.++.++..+|
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDM-----------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-----------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHH-----------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 999999999999999999999999988777 999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 201 RAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
......+++++|+..|+++++.+|++...+..++.++.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 187 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA 187 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 55555669999999999999999999888888877653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-26 Score=157.28 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=168.0
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
......+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
++...|++++|...++++++..|.+... +..+|.++...|++++|+..++++++..|.++.++..+|.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 153 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNV-----------RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHH-----------HHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 9999999999999999999999998777 99999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 203 MHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
+...|++++|..+++++++.+|+++..
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 154 YEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 999999999999999999998887543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-27 Score=157.21 Aligned_cols=146 Identities=17% Similarity=0.101 Sum_probs=126.2
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQRE 131 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 131 (240)
+|.++...|++++|+..+++++...|+++..++.+|.+|+..|++++|++.|+++++++|+++.++..+|.++..+|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 67778888899999999999999888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhH-HHHHhhcChhhHHHHHHHHHHHHHcCC
Q psy17412 132 EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD-CDKALRLDEDNMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 132 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~~l~~~~~~~~~~~~la~~~~~~g~ 208 (240)
+|+..|+++++++|+++.. +.++|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~-----------~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDL-----------VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999988777 89999999999998887765 588999999999988888888887775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=154.65 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=174.4
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..+..+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHH--cCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 121 ARAMHSL-GQREEAKEYVRQLVE--KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 121 a~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
|.++... |++++|+..++++++ ..|.+... +..+|.++...|++++|+..++++++..|+++.++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIA-----------NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999 999999999999999 55555555 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHhh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYP-TRRKLVENYTQAF 237 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~ 237 (240)
.+|.++...|++++|+.++++++...| .++..+..++.++
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999 8888877666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-24 Score=165.18 Aligned_cols=166 Identities=17% Similarity=0.132 Sum_probs=151.4
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc---ccH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE---DNM 114 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~ 114 (240)
.....|..+..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..| ++.
T Consensus 29 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 108 (359)
T 3ieg_A 29 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK 108 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCch
Q psy17412 115 KAHLYK------------ARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSP 159 (240)
Q Consensus 115 ~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~ 159 (240)
.++..+ |.++...|++++|+..++++++..|.++.. ++...|..+
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 188 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 888777 789999999999999999999999988765 344567888
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 203 (240)
..+..+|.++...|++++|+..++++++..|++..++..+..+.
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999988777665554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=177.26 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=132.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.|.....|..+|..+...|++++|++.|++++...|++..++..+|.++...|++++|+..|+++++..|.++.++..+|
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc-hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS-PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
.++...|++++|+..|+++++..|+. ...|.. ..++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKT-----QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHS-----CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhcc-----ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 55555555555555555555442110 001111 456999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 201 RAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
.++...|++++|..+|+++++++|+++.++..++.+++.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998864
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-25 Score=161.97 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=156.5
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|...+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 55688888888888888888888888888888888888888888888888888888888888888888888888885555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc---cCchhhHHHHHhhcC---hh-----hHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL---YDPVLPDCDKALRLD---ED-----NMK 194 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~---~~-----~~~ 194 (240)
..+++++|+..++++++..|++... +..+|.++...|+ +++|+..++++++.. |+ ...
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIG-----------YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHH-----------HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 5568888888888888888887766 9999999999999 999999999999875 44 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 195 AHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
++..+|.++...|++++|+.+|+++++++|+++.++..++.+.
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 8899999999999999999999999999999999999887764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-26 Score=187.77 Aligned_cols=181 Identities=14% Similarity=-0.009 Sum_probs=170.7
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHH--------HhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAI--------EQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 113 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 113 (240)
+|.++..++..| ...|++++|++.|++++ +.+|++..++..+|.++...|++++|+..|+++++.+|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 445555666555 78899999999999999 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
+.+++.+|.++..+|++++|+..|+++++++|++... +.++|.++...|++++ +..|+++++.+|++.
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-----------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~ 534 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP-----------KLALAATAELAGNTDE-HKFYQTVWSTNDGVI 534 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH-----------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence 9999999999999999999999999999999999888 9999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+++++|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-24 Score=168.61 Aligned_cols=182 Identities=19% Similarity=0.172 Sum_probs=136.8
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH---HHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM---KAH 117 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~ 117 (240)
..|..+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|++. .++
T Consensus 55 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 134 (450)
T 2y4t_A 55 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666555 444
Q ss_pred HHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 118 LYK------------ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 118 ~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
..+ |.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL-----------RELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333 444666666666666666666666665555 999999999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 186 LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 186 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
++.+|+++.++..+|.++...|++++|+..|++++..+|++...+..+
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 999999999999999999999999999999999999999998877665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-25 Score=173.65 Aligned_cols=199 Identities=18% Similarity=0.223 Sum_probs=177.9
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..+|..+..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCch---HHHHHhc-cCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRR---KLAIEQV-RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
+|.++..+|++++|+..|+++++..|++. ....... ......+..+|.++...|++++|+..++++++..|.+..+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999877 4400000 0011124555888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+..+|.++...|++++|+..|+++++.+|.++.++..++.++.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=185.24 Aligned_cols=153 Identities=19% Similarity=0.122 Sum_probs=147.9
Q ss_pred hcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 75 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
..|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++...
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a---- 79 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA---- 79 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----
Confidence 4688899999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.++|.++...|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.+++
T Consensus 80 -------~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 80 -------YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred -------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy17412 235 QAFE 238 (240)
Q Consensus 235 ~~~~ 238 (240)
.++.
T Consensus 153 ~~l~ 156 (723)
T 4gyw_A 153 HCLQ 156 (723)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 8875
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-25 Score=165.12 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=156.8
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|..+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 48 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 127 (327)
T 3cv0_A 48 CQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 34566777788888888888888888888888888888888888888888888888888888888888888777766665
Q ss_pred HH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 119 YK--------------AR-AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 119 ~l--------------a~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
.+ +. ++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~~~~~~A~~~~~ 196 (327)
T 3cv0_A 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL-----------HASLGVLYNLSNNYDSAAANLR 196 (327)
T ss_dssp ------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH-----------HHHHHHHHHHhccHHHHHHHHH
Confidence 55 55 5777788888888888888888776666 9999999999999999999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++++.+|+++.++..+|.++...|++++|+.+++++++..|+++.++..++.++.
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-25 Score=152.44 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=145.5
Q ss_pred CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccC
Q psy17412 78 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRD 157 (240)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 157 (240)
+++.+|+++|.+|...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..+++++...|++...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA------- 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH-------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH-------
Confidence 4678999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+..+|.++...++++.|...+.++++.+|++..++..+|.++..+|++++|+..|+++++.+|.++.++..++.++
T Consensus 76 ----~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 76 ----YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hc
Q psy17412 238 EQ 239 (240)
Q Consensus 238 ~~ 239 (240)
.+
T Consensus 152 ~~ 153 (184)
T 3vtx_A 152 EG 153 (184)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=164.03 Aligned_cols=189 Identities=14% Similarity=0.079 Sum_probs=173.7
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHH--------------HH-HHHHccCcCchHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR--------------AL-TLLHLQLYDPVLPDC 103 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~ 103 (240)
....|.....+..+|.++...|++++|+..+++++...|.+...+..+ +. ++...|++++|+..+
T Consensus 82 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 82 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred HhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 445778899999999999999999999999999999999998888777 66 688999999999999
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
++++...|.++.++..+|.++...|++++|+..++++++..|++... +..+|.++...|++++|+..++
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL-----------WNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998777 9999999999999999999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHhhh
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT------------RRKLVENYTQAFE 238 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~ 238 (240)
++++..|++..++..+|.++...|++++|+.++++++...|+ ++.++..++.++.
T Consensus 231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 231 RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 7888888888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=155.13 Aligned_cols=144 Identities=10% Similarity=0.043 Sum_probs=133.0
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHH
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTN 164 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
.+|.++...|++++|+..+++++...|+++..++.+|.+|+.+|++++|+.+|+++++++|+++.. +..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a-----------~~~ 70 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA-----------HRF 70 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHH
Confidence 478899999999999999999999999999999999999999999999999999999999999888 999
Q ss_pred HHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 165 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY-IRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 165 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++...++++..
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887765 599999999999999999888764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=171.27 Aligned_cols=189 Identities=13% Similarity=0.063 Sum_probs=168.3
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...|.....+..+|..+...|++++|++.|+++++..|.+..+|..+|.++...|++++|++.|++++...|++..++..
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc------Chhh-
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL------DEDN- 192 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~- 192 (240)
+|.++...|++++|+..|+++++..|.++.. +..+|.++.+.|++++|+..|+++++. +|+.
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLL-----------LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 8888888888888888888888888887766 999999999999999999999999988 5654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
..++..+|.++...|++++|+..++++++.+|+++.++..++.++.+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999988753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=155.17 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=159.7
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH---HHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK---AHL 118 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 118 (240)
.+..++.+|..++..|+|++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456789999999999999999999999999999874 68999999999999999999999999999998754 789
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCchHHHH------HhccCchHHHHHHHHHHHHhcc
Q psy17412 119 YKARAMHS------------------LGQREEAKEYVRQLVEKYPTRRKLAI------EQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 119 ~la~~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~la~~~~~~~~ 174 (240)
.+|.++.. .|++++|+..|+++++..|+++.... ............+|.++...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999876 57999999999999999999875510 0001112234678999999999
Q ss_pred cCchhhHHHHHhhcChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 175 YDPVLPDCDKALRLDEDNM---KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
+++|+..|+++++..|+++ .++..+|.++..+|++++|+..++++....|++.+
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999999998865 78999999999999999999999999998887643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=158.81 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=112.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH-
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA- 121 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la- 121 (240)
|+++..++.+|.++...|++++|++.+++ |++..++..+|.++...|++++|+..++++++.+|++.......+
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 172 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence 44445555555555555555555555544 444555555555555555555555555555555554432222222
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 122 -RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 122 -~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
.++...|++++|+..|+++++..|+++ .+++++|.++...|++++|+..++++++.+|+++.++.++|
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~~-----------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADKCSPTL-----------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSCCCH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHhCCCcH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 112223455555555555555555444 44899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHH-HHHHHHHHHHhCCCcHHHHHHH
Q psy17412 201 RAMHNLGQREE-AKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 201 ~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l 233 (240)
.++..+|+.++ +..+++++++.+|+++.+....
T Consensus 242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999876 5678889999999988766543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-23 Score=152.68 Aligned_cols=187 Identities=15% Similarity=0.100 Sum_probs=161.7
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+..+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHH----------------------HHHhccCchHHHHHHHHHHHHhcccCchh
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVL 179 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (240)
.++...|++++|+..++++++..|++... .+...+..... ..++.++...++.++|+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-WNIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-HHHHHHHTTSSCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999998743 12222333333 33555666666677778
Q ss_pred hHHHHHhhcChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 180 PDCDKALRLDEDN----MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 180 ~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
..+.++++..|.. +.++..+|.++...|++++|+.+|++++..+|++...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 8888887776643 7889999999999999999999999999999977553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=156.09 Aligned_cols=181 Identities=9% Similarity=0.019 Sum_probs=163.3
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
.+....++..++..+...+++++|++.+++.+.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~ 135 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAM 135 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHH
Confidence 5567788889999999999999999999999876 699999999999999999999999999988 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHH--HHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRA--LTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
+|.++..+|++++|+..++++++.+|++... ....+ .++...|++++|+..|+++++.+|+++.++.
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-----------~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLT-----------QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH-----------HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999999986533 22222 3334558999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+|.++..+|++++|...|++++..+|++++++.+++.++.
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=139.45 Aligned_cols=123 Identities=20% Similarity=0.316 Sum_probs=114.3
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 105 KALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
++..++|+.+..+..+|..++..|+|++|+..|+++++++|.++.. +.++|.++..+|++++|+..+++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL-----------YSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHhhHHHhhccHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999998888 99999999999999999999999
Q ss_pred HhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 185 ALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 185 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++++++..+++++.
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~lr 126 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHCC
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998863
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=166.15 Aligned_cols=194 Identities=19% Similarity=0.122 Sum_probs=150.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+..+..+..+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..+++++...|.++.++..+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 777889999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhcccCchh
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVL 179 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (240)
++...|++++|+..++++++..|.+... ++...|..+.++..+|.++...|++++|+
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999998887654 23334455556666666666666666666
Q ss_pred hHHHHHhhcChhhHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 180 PDCDKALRLDEDNMK------AHLYKARAMHN---LGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 180 ~~~~~~l~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
..++++++..|++.. ++..+|.++.. .|++++|+..+++++..+|+++.++..++.++
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 666666666555533 56666666666 66666666666666666666666666555554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=169.10 Aligned_cols=169 Identities=16% Similarity=0.138 Sum_probs=161.3
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc---------cCcCchHHHHHHHHh
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL---------QLYDPVLPDCDKALR 108 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~ 108 (240)
.....|..+.++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++... |++++|+..++++++
T Consensus 129 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 45668889999999999999999999999999999999999 79999999999999 999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCC---CchHHHHHhccCchHHHHHHHHHHHHhcccCc
Q psy17412 109 LDEDNMKAHLYKARAMHSL--------GQREEAKEYVRQLVEKYP---TRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (240)
++|+++.++..+|.++..+ |++++|+..|+++++++| .++.. +.++|.++...|++++
T Consensus 208 ~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----------~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 208 MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL-----------HLNRATLHKYEESYGE 276 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH-----------HHHHHHHHHHTTCHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHH-----------HHHHHHHHHHcCCHHH
Confidence 9999999999999999999 999999999999999999 77776 9999999999999999
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17412 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRE 218 (240)
Q Consensus 178 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (240)
|+..|+++++.+|++..++..++.++..+|++++|+..+.+
T Consensus 277 A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999986654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=168.09 Aligned_cols=191 Identities=17% Similarity=0.154 Sum_probs=136.3
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..|. ...+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..+
T Consensus 272 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 350 (537)
T 3fp2_A 272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350 (537)
T ss_dssp HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHH
T ss_pred cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444 677777777777777788888888877777777777777778777777888888888888777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCc------hHHHHHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDS------PVLYTNRALTLLH 171 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~------~~~~~~la~~~~~ 171 (240)
|.++...|++++|+..++++++..|+++.. ++...|.. ...+..+|.++..
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 777777788888888887777777776654 11111111 1224555667777
Q ss_pred h----------cccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 172 L----------QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 172 ~----------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
. |++++|+..++++++.+|++..++..+|.++..+|++++|+.+|+++++++|+.+.....
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 6 777777777777777777777777777777777777777777777777777777665443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=165.01 Aligned_cols=195 Identities=18% Similarity=0.141 Sum_probs=167.5
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...|. ...+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..
T Consensus 265 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 265 ELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp HHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred hhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence 34555 88888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchH------HHHHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPV------LYTNRALTLL 170 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~------~~~~la~~~~ 170 (240)
+|.++...|++++|+..++++++..|+++.. ++...|..+. .+..+|.++.
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888876654 2333344433 8999999999
Q ss_pred H---hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 171 H---LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 171 ~---~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
. .|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999999988776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=150.25 Aligned_cols=151 Identities=12% Similarity=0.159 Sum_probs=143.2
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 155 (240)
+.++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++..+|++++|+..++++++.+|++...
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~----- 78 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA----- 78 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH-----
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH-----
Confidence 45678999999999999999999999999999998 888999999999999999999999999999999998887
Q ss_pred cCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c
Q psy17412 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM-------KAHLYKARAMHNLGQREEAKEYIRELVEKYPT--R 226 (240)
Q Consensus 156 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~ 226 (240)
+..+|.++...|++++|+..++++++.+|+++ .++..+|.++..+|++++|+..|+++++.+|+ +
T Consensus 79 ------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 152 (228)
T 4i17_A 79 ------YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK 152 (228)
T ss_dssp ------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH
T ss_pred ------HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999988 66999999999999999999999999999999 8
Q ss_pred HHHHHHHHHhhh
Q psy17412 227 RKLVENYTQAFE 238 (240)
Q Consensus 227 ~~~~~~l~~~~~ 238 (240)
+.++..++.++.
T Consensus 153 ~~~~~~l~~~~~ 164 (228)
T 4i17_A 153 TDALYSLGVLFY 164 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999888763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=152.92 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=143.1
Q ss_pred HHHhchhHHHHHHHhHhHHHH-------hCCH-------HHHHHHHHHHHH-hcCCChHHHHHHHHHHHHccCcCchHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQ-------SGQY-------EAALVQYDKAIE-QVRDSPVLYTNRALTLLHLQLYDPVLPD 102 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~-------~~~~-------~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 102 (240)
.....|..+..|+..|..+.. .|++ ++|+..|++++. ..|++..+|..+|.++...|++++|...
T Consensus 42 al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 121 (308)
T 2ond_A 42 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344577888899998888764 4775 899999999998 6899988999999999999999999999
Q ss_pred HHHHHhcCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH-hcccCchhh
Q psy17412 103 CDKALRLDEDNMK-AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH-LQLYDPVLP 180 (240)
Q Consensus 103 ~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~ 180 (240)
|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+... +...+.+... .|++++|+.
T Consensus 122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-----------~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV-----------YVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH-----------HHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH-----------HHHHHHHHHHHcCCHHHHHH
Confidence 9999999888876 89999999999999999999999999888876554 5444444332 466777777
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-cHHHHHHHHHh
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK---YPT-RRKLVENYTQA 236 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~ 236 (240)
.|+++++.+|+++.+|..++.++..+|++++|...|++++.. .|+ ...+|..++.+
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777764 332 45555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-23 Score=164.65 Aligned_cols=159 Identities=13% Similarity=0.026 Sum_probs=143.1
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|..+..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|+++.++.
T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 382 (537)
T 3fp2_A 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT 382 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---------------------------------------HHHhccCch
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL---------------------------------------AIEQVRDSP 159 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~ 159 (240)
.+|.++...|++++|+..++++++..|++... ++...|..+
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999987654211 244467788
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
.++..+|.++...|++++|+..|+++++..|+......
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-22 Score=159.35 Aligned_cols=194 Identities=21% Similarity=0.093 Sum_probs=159.6
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC----
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQ---------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD---- 110 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 110 (240)
..+..+..+|.++...|++++|++.|++++++ +|.....+.++|.+|..+|++++|+.++++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567778999999999999999999999886 34556778899999999999999999999988763
Q ss_pred ----cccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCchHH--------------------------HHHhccCc
Q psy17412 111 ----EDNMKAHLYKARAMHSL--GQREEAKEYVRQLVEKYPTRRKL--------------------------AIEQVRDS 158 (240)
Q Consensus 111 ----~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~--------------------------~~~~~~~~ 158 (240)
+..+.++..+|.++... +++++|+.+|+++++++|+++.. ++...|..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 34567788888777665 47899999999999999988765 34445667
Q ss_pred hHHHHHHHHHHHH----hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 159 PVLYTNRALTLLH----LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 159 ~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.++..+|..+.. .+++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|+++.++..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 7778888776654 467889999999999999999999999999999999999999999999999999999999888
Q ss_pred Hhh
Q psy17412 235 QAF 237 (240)
Q Consensus 235 ~~~ 237 (240)
.++
T Consensus 289 ~~y 291 (472)
T 4g1t_A 289 CCY 291 (472)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=135.30 Aligned_cols=119 Identities=25% Similarity=0.445 Sum_probs=113.6
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
..+|+.++.+..+|..++..|+|++|++.|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
+|.++..+|++++|+..|+++++++|++... +..++.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a-----------~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEA-----------REGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH-----------HHHHHHhc
Confidence 9999999999999999999999999999887 87777653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=147.32 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=148.5
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999 77766666655
Q ss_pred HH-HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh--HHHHHHHH
Q psy17412 124 MH-SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN--MKAHLYKA 200 (240)
Q Consensus 124 ~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la 200 (240)
.. ..+...+|+..++++++.+|+++.. ++.+|.++...|++++|+..|+++++.+|+. ..++..+|
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~ 151 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFEL-----------ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence 33 3344556899999999999999888 9999999999999999999999999999975 66999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy17412 201 RAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~ 221 (240)
.++..+|+.++|+..|++++.
T Consensus 152 ~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 152 DILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=172.15 Aligned_cols=157 Identities=13% Similarity=-0.012 Sum_probs=148.7
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...|.....++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+++.++++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 199 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 199 (240)
+|.++..+|++++ +..|+++++++|++... ++++|.++...|++++|+..|+++++++|++..++.++
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a-----------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 574 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISA-----------AFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTS 574 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHH-----------HHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHH
Confidence 9999999999999 99999999999999888 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q psy17412 200 ARAMHNLGQ 208 (240)
Q Consensus 200 a~~~~~~g~ 208 (240)
|.++...|+
T Consensus 575 ~~~~~~~~~ 583 (681)
T 2pzi_A 575 AVTLLSGRS 583 (681)
T ss_dssp HHHTC----
T ss_pred HHHHHccCC
Confidence 999988666
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=167.79 Aligned_cols=163 Identities=12% Similarity=-0.004 Sum_probs=136.9
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVR 138 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 138 (240)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++..+|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHc---CCHHHHHHH
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL---GQREEAKEY 215 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~ 215 (240)
++++.+|++... +.++|.++...|++++|+..++++++.+|++..++..+|.++..+ |++++|...
T Consensus 82 ~al~~~p~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 82 QASDAAPEHPGI-----------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHhcCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 999999998877 999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhCCCcHHHHHH
Q psy17412 216 IRELVEKYPTRRKLVEN 232 (240)
Q Consensus 216 ~~~~~~~~p~~~~~~~~ 232 (240)
++++++.+|.+...+..
T Consensus 151 ~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 151 VRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp HHHHHHHTCCCSCHHHH
T ss_pred HHHHHhcCCcccChHHH
Confidence 99999999987555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-23 Score=152.30 Aligned_cols=169 Identities=16% Similarity=0.077 Sum_probs=161.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.|.....++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 37788899999999999999999999999999999999999999999999999999999999999999998877778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh--HHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN--MKAHLYK 199 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~l 199 (240)
..+...++.++|+..+++++..+|++... ++++|.++...|++++|+..|.++++.+|++ ..++..+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~-----------~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAAL-----------ATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHH-----------HHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 88999999999999999999999999888 9999999999999999999999999999988 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q psy17412 200 ARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~~~ 221 (240)
+.++..+|+.++|...|++++.
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=150.18 Aligned_cols=171 Identities=18% Similarity=0.109 Sum_probs=154.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHccCcCchHHHHHHHHhc----
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV--------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL---- 109 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 109 (240)
.+..+..+..+|.++...|++++|+..|++++... |....++..+|.++...|++++|+.++++++..
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999884 555778999999999999999999999999987
Q ss_pred ----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCchHHHHHhccCchHHHHHHHHHHHHhcccCc
Q psy17412 110 ----DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK--------YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177 (240)
Q Consensus 110 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (240)
.|....++..+|.++...|++++|+.++++++++ .|.. ..++..+|.++...|++++
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV-----------AKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-----------HHHHHHHHHHHHHHTCHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-----------HHHHHHHHHHHHHcCCHHH
Confidence 5778889999999999999999999999999998 3333 3459999999999999999
Q ss_pred hhhHHHHHhhc-------------------------------------------------ChhhHHHHHHHHHHHHHcCC
Q psy17412 178 VLPDCDKALRL-------------------------------------------------DEDNMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 178 A~~~~~~~l~~-------------------------------------------------~~~~~~~~~~la~~~~~~g~ 208 (240)
|+..++++++. .|....++..+|.++..+|+
T Consensus 188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999875 35667789999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q psy17412 209 REEAKEYIRELVEKY 223 (240)
Q Consensus 209 ~~~A~~~~~~~~~~~ 223 (240)
+++|..+++++++..
T Consensus 268 ~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 268 LEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=150.65 Aligned_cols=174 Identities=17% Similarity=0.140 Sum_probs=156.9
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc---
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ--------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--- 109 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 109 (240)
..|..+..+..+|..+...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999995 5566788999999999999999999999999977
Q ss_pred -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCchHHHHHhccCchHHHHHHHHHHHHhcccCchh
Q psy17412 110 -----DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY-----PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179 (240)
Q Consensus 110 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (240)
.|....++..+|.++...|++++|+.++++++++. ++++.. ..++..+|.++...|++++|+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV--------AKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--------HHHHHHHHHHHHTTTCHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH--------HHHHHHHHHHHHHcCCHHHHH
Confidence 46678899999999999999999999999999875 332322 556999999999999999999
Q ss_pred hHHHHHhhc--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 180 PDCDKALRL--------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 180 ~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.+++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999988 7888899999999999999999999999999975
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=139.11 Aligned_cols=121 Identities=13% Similarity=0.042 Sum_probs=111.4
Q ss_pred cCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhccc
Q psy17412 96 YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY 175 (240)
Q Consensus 96 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 175 (240)
+-.+...+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.. |.++|.++...|++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~-----------~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY-----------IMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHccH
Confidence 3334456777888999999999999999999999999999999999999998888 99999999999999
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+.+
T Consensus 87 ~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=151.67 Aligned_cols=179 Identities=11% Similarity=-0.043 Sum_probs=147.9
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc------
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------ 113 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------ 113 (240)
...+...|.++...|++++|+..|.+++.+.+. .+.++.++|.+|...|++++|+.++++++.+.|..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345566688899999999999999999998542 25789999999999999999999999999887643
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 114 MKAHLYKARAMHSL-GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 114 ~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
..++..+|.++... |++++|+.+|++++++.|..... .....++.++|.++...|++++|+.+|+++++..|++
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV-----ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 56899999999996 99999999999999988753211 0113458999999999999999999999999998865
Q ss_pred HH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 193 MK-------AHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 193 ~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
.. .+..+|.++..+|++++|+.+|++++.++|+....
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 32 67899999999999999999999999999986553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-22 Score=147.94 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=156.1
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV--------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-- 110 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 110 (240)
..+..+..+..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+..+++++...
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999999999999873 5557789999999999999999999999999874
Q ss_pred ------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 111 ------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK--------YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 111 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
|....++..+|.++...|++++|+.+++++++. .|.. ..++..+|.++...|+++
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~la~~~~~~g~~~ 212 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV-----------AKTKNNLASCYLKQGKFK 212 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH-----------HHHHHHHHHHHHHHTCHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHHcCCHH
Confidence 667789999999999999999999999999987 3333 445999999999999999
Q ss_pred chhhHHHHHhhc-------------------------------------------------ChhhHHHHHHHHHHHHHcC
Q psy17412 177 PVLPDCDKALRL-------------------------------------------------DEDNMKAHLYKARAMHNLG 207 (240)
Q Consensus 177 ~A~~~~~~~l~~-------------------------------------------------~~~~~~~~~~la~~~~~~g 207 (240)
+|+..++++++. .|....++..+|.++..+|
T Consensus 213 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g 292 (311)
T 3nf1_A 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQG 292 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCC
Confidence 999999999974 4677888999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q psy17412 208 QREEAKEYIRELVEKYPT 225 (240)
Q Consensus 208 ~~~~A~~~~~~~~~~~p~ 225 (240)
++++|+.+|++++++.|.
T Consensus 293 ~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 293 KFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999999998775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=145.88 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=142.2
Q ss_pred HHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 73 IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 73 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
....|.++..++.+|..++..|++++|+..|++++...|++ +.+++.+|.++..+|++++|+..|+++++..|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578889999999999999999999999999999999988 899999999999999999999999999999997654
Q ss_pred HHHHhccCchHHHHHHHHHHHH--------hcccCchhhHHHHHhhcChhhHHHH-----------------HHHHHHHH
Q psy17412 150 LAIEQVRDSPVLYTNRALTLLH--------LQLYDPVLPDCDKALRLDEDNMKAH-----------------LYKARAMH 204 (240)
Q Consensus 150 ~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~l~~~~~~~~~~-----------------~~la~~~~ 204 (240)
. +.+++.+|.++.. .|++++|+..|+++++.+|++..+. +.+|.++.
T Consensus 88 ~--------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 88 V--------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp H--------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5669999999999 9999999999999999999875554 88899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHhhh
Q psy17412 205 NLGQREEAKEYIRELVEKYPT---RRKLVENYTQAFE 238 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 238 (240)
..|++++|+..|++++..+|+ .+.++..++.++.
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 999999999999999999998 4567888877664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=145.35 Aligned_cols=176 Identities=10% Similarity=-0.037 Sum_probs=162.9
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.|+....|...|..+...|++++|...|+++++..|.++. +|..+|.++...|++++|...|+++++..|....++...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6888999999999999999999999999999999999887 999999999999999999999999999999988888877
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc---Chh-hHHH
Q psy17412 121 ARAMHS-LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL---DED-NMKA 195 (240)
Q Consensus 121 a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~~-~~~~ 195 (240)
+.+... .|++++|...|+++++..|+++.. +..+|..+...|++++|+..|++++.. .|+ ...+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----------~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEY-----------VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 766544 799999999999999999998877 999999999999999999999999995 564 7889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
|..++..+...|+.++|...++++++..|++..
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999999999999998543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=149.42 Aligned_cols=191 Identities=11% Similarity=0.015 Sum_probs=156.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHc-cCcCchHHHHHHHHhcCccc---
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHL-QLYDPVLPDCDKALRLDEDN--- 113 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~--- 113 (240)
..+.++..+|.++...|++++|+.+|++++.+.|.. ..++.++|.+|... |++++|+.+|++++.+.|..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 457899999999999999999999999999998754 45889999999996 99999999999999988754
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 114 ---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 114 ---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
..++..+|.++..+|++++|+.+|++++++.|++... .......+.++|.++...|++++|+..++++++++|
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS----QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5678999999999999999999999999999886431 001123588999999999999999999999999999
Q ss_pred hhHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 191 DNMKA-----HLYKARAMH--NLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 191 ~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.... +..++..+. ..+++++|+..|++++.++|....++..+.+.++
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~ 285 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQ 285 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhh
Confidence 86543 444555554 4678999999999999999988888887777653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-23 Score=150.60 Aligned_cols=170 Identities=18% Similarity=0.088 Sum_probs=152.0
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQ----VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
..++......|++++|+..|+++++. .|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 9 EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT 88 (275)
T ss_dssp GGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 33455556678999999999999997 45668899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
..|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++.+|++.......+.. ..
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~ 156 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYA-----------HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ 156 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH
T ss_pred HccCHHHHHHHHHHHHhcCccccHH-----------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH
Confidence 9999999999999999999998877 99999999999999999999999999999988766666544 66
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 206 LGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
.|++++|+..+++++...|.+...+.
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKSDKEQWGWN 182 (275)
T ss_dssp HHCHHHHHHHHHHHHHHSCCCSTHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcchHHHH
Confidence 79999999999999998887755443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-21 Score=140.41 Aligned_cols=176 Identities=15% Similarity=-0.024 Sum_probs=159.4
Q ss_pred hhHHHHHHHhHhHHHH----hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCcCchHHHHHHHHhcCcccH
Q psy17412 43 QDIADHFKANGNKAFQ----SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 114 (240)
+..+.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.. ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 6778899999999999 999999999999999885 78899999999999 999999999999999874 78
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH----hcccCchhhHHHHHh
Q psy17412 115 KAHLYKARAMHS----LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKAL 186 (240)
Q Consensus 115 ~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l 186 (240)
.++..+|.++.. .+++++|+.+++++++.. ++.. +..+|.++.. .+++++|+.++++++
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a-----------~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 177 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG-----------CTILGSLYDAGRGTPKDLKKALASYDKAC 177 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH-----------HHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH-----------HHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 899999999999 999999999999999976 3444 8999999998 999999999999999
Q ss_pred hcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 187 RLDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 187 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+.. ++.++..+|.++.. .+++++|+.+|+++++..| +.++..++.++.+
T Consensus 178 ~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 178 DLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 874 57889999999999 9999999999999999866 7788888887754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=161.43 Aligned_cols=189 Identities=13% Similarity=0.045 Sum_probs=143.1
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-------------------cCcCc
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-------------------QLYDP 98 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-------------------~~~~~ 98 (240)
.....|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|... +.+++
T Consensus 239 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 239 ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Confidence 34567888999999999999999999999999999999999999999999998653 34678
Q ss_pred hHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHH-HHHhcccCc
Q psy17412 99 VLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT-LLHLQLYDP 177 (240)
Q Consensus 99 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~ 177 (240)
|+..+++++..+|.+..++..+|.++...|++++|+.+|++++++.|++... ..++..+|.+ ....|++++
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK--------QLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH--------HHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999886543 2345666654 457789999
Q ss_pred hhhHHHHHhhcC------------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 178 VLPDCDKALRLD------------------------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 178 A~~~~~~~l~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
|+..|.+++++. |+++.++..+|.++..+|++++|+++|+++++..|.+|.+...+
T Consensus 391 Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999988765 45567889999999999999999999999999999999888776
Q ss_pred H
Q psy17412 234 T 234 (240)
Q Consensus 234 ~ 234 (240)
|
T Consensus 471 G 471 (472)
T 4g1t_A 471 G 471 (472)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=153.39 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=149.2
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-------cccH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQV------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-------EDNM 114 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 114 (240)
.++.+|..+...|++++|+..|++++... +..+.++..+|.+|...|++++|+.++++++.+. +...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 34459999999999999999999999872 2246789999999999999999999999999874 3345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhh-----cC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR-----LD 189 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~ 189 (240)
.++..+|.++..+|++++|+.++++++++.+.... .+..+.++.++|.++...|++++|+.+++++++ .+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-----PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 68999999999999999999999999988654321 112245699999999999999999999999999 56
Q ss_pred -hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 190 -EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 190 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
|..+.++..+|.++..+|++++|+.++++++...+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999998743
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-20 Score=136.54 Aligned_cols=168 Identities=13% Similarity=0.028 Sum_probs=141.7
Q ss_pred hHHHHHHHhHhHHHH----hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCcCchHHHHHHHHhcCcccHH
Q psy17412 44 DIADHFKANGNKAFQ----SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
..+.+++.+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. ++.
T Consensus 72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 147 (273)
T 1ouv_A 72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGD 147 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHH
Confidence 367888889999988 89999999999998887 478888899999988 899999999999998875 567
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH----hcccCchhhHHHHHhh
Q psy17412 116 AHLYKARAMHS----LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALR 187 (240)
Q Consensus 116 ~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~ 187 (240)
++..+|.++.. .+++++|+.+++++++.. ++.. +..+|.++.. .+++++|+.+++++++
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a-----------~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPG-----------CFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH-----------HHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH-----------HHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 88889999888 889999999999988874 3344 8889999988 8899999999999988
Q ss_pred cChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 188 LDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 188 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
..| +.++..+|.++.. .+++++|+.+|+++++..|++...+
T Consensus 215 ~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 215 LEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred CCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 765 6788889999988 8999999999999999887655444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=136.23 Aligned_cols=114 Identities=9% Similarity=-0.135 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 68 QYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 68 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
.+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++..+|++++|+..|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 34444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 148 RKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 148 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
+.. ++++|.++...|++++|+..|++++++.|+.
T Consensus 104 ~~~-----------~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 104 YTP-----------VFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred cHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 444 5555555555555555555555555555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=131.21 Aligned_cols=123 Identities=12% Similarity=0.057 Sum_probs=106.0
Q ss_pred chHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCc
Q psy17412 98 PVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177 (240)
Q Consensus 98 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (240)
.+...+++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.. +..+|.++...|++++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF-----------FLGLGACRQAMGQYDL 73 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHH-----------HHHHHHHHHHHhhHHH
Confidence 34456888888888888889999999999999999999999999998888777 8889999999999999
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 178 VLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 178 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
|+..|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++....
T Consensus 74 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 74 AIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999988889999999999999999999999999988888766543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-21 Score=149.46 Aligned_cols=191 Identities=13% Similarity=0.072 Sum_probs=158.6
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHccCcCchHHHHHHHHhc------Cc
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP----VLYTNRALTLLHLQLYDPVLPDCDKALRL------DE 111 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~ 111 (240)
.+..+..+..+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++.. .|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 356788889999999999999999999999999999986 58899999999999999999999999987 57
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc-----------------
Q psy17412 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL----------------- 174 (240)
Q Consensus 112 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------------- 174 (240)
....++..+|.++...|++++|+.++++++++.+... ..+....++..+|.++...|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-----DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 7788999999999999999999999999998743311 111224558889999999999
Q ss_pred cCchhhHHHHHhhcC------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHhh
Q psy17412 175 YDPVLPDCDKALRLD------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK------LVENYTQAF 237 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~ 237 (240)
+++|+.++.+++++. +....++..+|.++...|++++|+.++++++...+.... ++..++.++
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 888888888887764 334567888999999999999999999998887765433 556666554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=146.05 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=151.1
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc-------c
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVR------DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE-------D 112 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~ 112 (240)
...++.+|..+...|++++|+..|++++...+ ..+.++..+|.+|...|++++|+.++++++...+ .
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 34677899999999999999999999998743 2367899999999999999999999999997643 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhh-----
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR----- 187 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----- 187 (240)
...++..+|.++..+|++++|+.++++++++.+.... .+..+.++.++|.++...|++++|+.+++++++
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-----DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 3568899999999999999999999999987542111 112245699999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 188 LDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 188 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
.+|....++..+|.++..+|++++|+.++++++...+.
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999998543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=150.53 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=146.6
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc------Cccc
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL------DEDN 113 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~ 113 (240)
+..+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++.. .+..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence 468999999999999999999999999998 5666789999999999999999999999999988 5666
Q ss_pred HHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 114 MKAHLYKARAMHSLGQ-----------------REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~-----------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
..++..+|.++...|+ +++|+.++++++++.+... ..+....++..+|.++...|+++
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG-----DRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCChH
Confidence 7799999999999999 9999999999988653311 11122445777777777778888
Q ss_pred chhhHHHHHhhcChhhH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHhh
Q psy17412 177 PVLPDCDKALRLDEDNM------KAHLYKARAMHNLGQREEAKEYIRELVEKYPTR------RKLVENYTQAF 237 (240)
Q Consensus 177 ~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~ 237 (240)
+|+.+++++++..+... .++..+|.++...|++++|+.++++++...+.. ..++..++.++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 313 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY 313 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88877777777665432 267777777777777777777777777765533 34455555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=130.76 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------- 78 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV--------- 78 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---------
Confidence 56788999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.++.++..++.++.
T Consensus 79 --~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 79 --ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=144.41 Aligned_cols=177 Identities=23% Similarity=0.308 Sum_probs=151.0
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHH--------------------HHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKL--------------------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
+..+|++++|+..|+++++++|++... .....+..+.+...++.+. .|++++|++.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~ 159 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQ 159 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTS
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 999999999999999999998865311 1111234445555555543 688899999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNL-GQREEAKEYIRELVEK 222 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~ 222 (240)
++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 160 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 160 RNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999998888877777777766 7788888888887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=147.86 Aligned_cols=189 Identities=14% Similarity=0.089 Sum_probs=152.3
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhc------Cccc
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRL------DEDN 113 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~ 113 (240)
..+..++..|..+...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..+++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456788999999999999999999999999999988 468889999999999999999999999877 3556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc-------------------
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL------------------- 174 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------------- 174 (240)
..++..+|.++...|++++|+.++++++++.|..... +..+.++..+|.++...|+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-----VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 7799999999999999999999999999987653221 1124457888888888888
Q ss_pred -cCchhhHHHHHhhc------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHhh
Q psy17412 175 -YDPVLPDCDKALRL------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK------LVENYTQAF 237 (240)
Q Consensus 175 -~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~ 237 (240)
+++|+..+.++++. .|....++..+|.++...|++++|+.++++++...|.... ++..++.++
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 88888888888766 3445667788888888888888888888888876554333 555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=147.01 Aligned_cols=191 Identities=14% Similarity=0.052 Sum_probs=150.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccC--------------------
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQL-------------------- 95 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~-------------------- 95 (240)
.+..+.++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 45668889999999999999999999999999887653 4588899999999999
Q ss_pred cCchHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 96 YDPVLPDCDKALRL------DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 96 ~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
+++|+..+++++.+ .|....++..+|.++...|++++|+.++++++++.+..... +....++.++|.++
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-----AAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHH
Confidence 99999999998876 34456688999999999999999999999999876653321 11134578888888
Q ss_pred HHhcccCchhhHHHHHhhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHhh
Q psy17412 170 LHLQLYDPVLPDCDKALRLDEDN------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR------RKLVENYTQAF 237 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~ 237 (240)
...|++++|+.+++++++..|.. ..++..+|.++...|++++|+.++++++...+.. ..++..++.++
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 88888888888888888776654 6677888888888888888888888887764433 34555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-23 Score=155.21 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=153.0
Q ss_pred HhCCHHHHHHHHHH----HHHhcCCChHHHHHHHHHHH------------HccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 58 QSGQYEAALVQYDK----AIEQVRDSPVLYTNRALTLL------------HLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 58 ~~~~~~~A~~~~~~----a~~~~~~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
..+.+++|+..++. ++.+.|+. ++..+|.... .++++++|+..+++++...|..+.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34578888888888 77888876 4545554432 567889999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchH----HHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRK----LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
.+++..|++++|+..|++++++.|.+.. ......+....++.++|.++...|++++|+..++++++++|+++.+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999998731 001111222345999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+|.++..+|++++|+..|+++++++|+++.++..++.++.
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-20 Score=132.68 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=134.5
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 155 (240)
++..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.++..+|++++|+..|+++++.+|+++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~----- 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----- 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH-----
Confidence 46788999999999999999999999999998876 4789999999999999999999999999999998754
Q ss_pred cCchHHHHHHHHHHHH------------------hcccCchhhHHHHHhhcChhhHHHH-----------------HHHH
Q psy17412 156 RDSPVLYTNRALTLLH------------------LQLYDPVLPDCDKALRLDEDNMKAH-----------------LYKA 200 (240)
Q Consensus 156 ~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~~l~~~~~~~~~~-----------------~~la 200 (240)
+.+++.+|.++.. .|++++|+..|+++++.+|++..++ ..+|
T Consensus 78 ---~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 78 ---DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp ---HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458888888876 5799999999999999999875443 5789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHhhhc
Q psy17412 201 RAMHNLGQREEAKEYIRELVEKYPTRR---KLVENYTQAFEQ 239 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 239 (240)
.++...|++++|+..|+++++.+|+++ +++..++.++.+
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999986 567777777643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-20 Score=137.10 Aligned_cols=153 Identities=17% Similarity=0.197 Sum_probs=143.4
Q ss_pred hcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy17412 75 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ 154 (240)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 154 (240)
..|++...+..+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++...|+....
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~---- 187 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ---- 187 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH----
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH----
Confidence 3488889999999999999999999999999999999999999999999999999999999999999999976555
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHH
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR--RKLVEN 232 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~ 232 (240)
....+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++ ..++..
T Consensus 188 -------~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 188 -------GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp -------HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred -------HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 77777888899999999999999999999999999999999999999999999999999999998 888998
Q ss_pred HHHhhh
Q psy17412 233 YTQAFE 238 (240)
Q Consensus 233 l~~~~~ 238 (240)
++.++.
T Consensus 261 l~~~~~ 266 (287)
T 3qou_A 261 FQEILA 266 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-22 Score=150.25 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=100.7
Q ss_pred hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---------------HHHHHHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---------------MKAHLYKARA 123 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~ 123 (240)
.+++++|+..+++++...|..+.++..+|.+++..|++++|+..|++++.+.|.+ ..++.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666566666666666666666666666666666666666655 4667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 203 (240)
+..+|++++|+..++++++++|++... ++++|.++...|++++|+..|+++++++|++..++..++.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a-----------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKG-----------LSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 777777777777777777777766655 777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHH-HHHHHHHHH
Q psy17412 204 HNLGQREEA-KEYIRELVE 221 (240)
Q Consensus 204 ~~~g~~~~A-~~~~~~~~~ 221 (240)
..+|++++| ...|++++.
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766 345555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=140.82 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=143.7
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHccCcCchHHHHHHHHhc------CcccH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----PVLYTNRALTLLHLQLYDPVLPDCDKALRL------DEDNM 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~ 114 (240)
....++..|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++.. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678889999999999999999999999999988 468889999999999999999999999877 45567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc--------------------
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL-------------------- 174 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------------------- 174 (240)
.++..+|.++...|++++|+..+++++++.+..... +....++..+|.++...|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-----VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 789999999999999999999999999876543221 1123457788888888888
Q ss_pred cCchhhHHHHHhhc------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 175 YDPVLPDCDKALRL------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 175 ~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
+++|+..+++++.. .+....++..+|.++...|++++|+.++++++...+.
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 88888888877765 2334567778888888888888888888888776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=126.15 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=92.3
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 101 PDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.. +..+|.++...|++++|+.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------~~~lg~~~~~~g~~~~A~~ 73 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY-----------FLGLGACRQSLGLYEQALQ 73 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHH-----------HHHHHHHHHHHhhHHHHHH
Confidence 45666777777777778888888888888888888888888888877666 7788888888888888888
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
.|++++..+|+++.+++.+|.++..+|++++|+.+|++++.++|+++......
T Consensus 74 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 74 SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88888888888888888888888888888888888888888777766554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=138.18 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=148.6
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc------c
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------N 113 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~ 113 (240)
...+...|.++...|++++|+..|.+++...+.. ..++.++|.+|...|++++|+.+|++++.+.+. .
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4456667888999999999999999999986543 568899999999999999999999999987532 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh-
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN- 192 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~- 192 (240)
..++..+|.++.. |++++|+.+|++++++.|..... .....++.++|.++...|++++|+.+|++++++.|.+
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL-----RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh-----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 5688999999999 99999999999999987653110 1124569999999999999999999999999987653
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 193 -----MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 193 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
...+..+|.++..+|++++|+.+|++++ .+|....
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 3478889999999999999999999999 9997543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-20 Score=147.14 Aligned_cols=188 Identities=12% Similarity=0.078 Sum_probs=166.6
Q ss_pred HHHhchhHHHHHHHhHhHHHH-------hCCHH-------HHHHHHHHHHH-hcCCChHHHHHHHHHHHHccCcCchHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQ-------SGQYE-------AALVQYDKAIE-QVRDSPVLYTNRALTLLHLQLYDPVLPD 102 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 102 (240)
.....|..+..|+..|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++...|++++|...
T Consensus 264 al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 264 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 345578889999999999886 79987 99999999997 7999999999999999999999999999
Q ss_pred HHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHH-HHHhcccCchhh
Q psy17412 103 CDKALRLDEDNM-KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT-LLHLQLYDPVLP 180 (240)
Q Consensus 103 ~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~ 180 (240)
|+++++..|.++ .+|..+|.++.+.|++++|...|+++++..|..... +...+.+ +...|++++|..
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~-----------~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV-----------YVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH-----------HHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH-----------HHHHHHHHHHHcCChhHHHH
Confidence 999999999885 699999999999999999999999999998876555 6655554 346899999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHh
Q psy17412 181 DCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK----LVENYTQA 236 (240)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~ 236 (240)
.|+++++..|+++.+|..++.++...|+.++|...|++++...|.++. +|..+.+.
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776654 66655543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-20 Score=120.16 Aligned_cols=133 Identities=26% Similarity=0.284 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (240)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------- 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA----------- 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH-----------
Confidence 344555555555555555555555555555555555556666666666666666666666655555444
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|..++++++..+|.
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 5566666666666666666666666666666666666666666666666666666666666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=139.27 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=138.8
Q ss_pred HHhCCHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHccCcCchHHHHHHHHhc--------CcccHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQV--------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--------DEDNMKAHLYK 120 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 120 (240)
...|++++|+.+|+++++.. |....++..+|.++...|++++|+..+++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35678888888888888752 555788999999999999999999999999977 47778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-----CCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc-------
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKY-----PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL------- 188 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------- 188 (240)
|.++...|++++|+.++++++... ++++.. ..++.++|.++...|++++|+.+++++++.
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV--------AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999883 322222 455999999999999999999999999998
Q ss_pred -ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 189 -DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 189 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
.|....++..+|.++..+|++++|+.++++++..
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999986
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-19 Score=133.47 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=148.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc--
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-- 113 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 113 (240)
.+.....+...+..+...|+|++|++.+.++++..+... ..++.+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 345667788899999999999999999999999877653 346678999999999999999999999765432
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 114 ----MKAHLYKARAMHSLGQREEAKEYVRQLV---EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 114 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
..++..+|.++..+|++++|+.++++++ +..|++... ...++.++|.+|...|++++|+.++++++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~-------~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF-------DVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc-------hHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 5689999999999999999999999999 445554322 12469999999999999999999999999
Q ss_pred hcChh------hHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q psy17412 187 RLDED------NMKAHLYKARAMHNLGQREEA-KEYIRELVEKY 223 (240)
Q Consensus 187 ~~~~~------~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~ 223 (240)
+..+. ...++.++|.++..+|++++| ..++++++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88654 278899999999999999999 88899988654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-19 Score=132.19 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=161.1
Q ss_pred HhCCH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc--CcCchHHHHHHHHhcCcccHHHHHHHHHHH----HHc---
Q psy17412 58 QSGQY-EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ--LYDPVLPDCDKALRLDEDNMKAHLYKARAM----HSL--- 127 (240)
Q Consensus 58 ~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~----~~~--- 127 (240)
..|.+ ++|+..+.+++.++|++..+|..++.+...+| ++++++..+.+++..+|.+..+|..++.++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 34444 68999999999999999999999999999999 999999999999999999999999999999 777
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC--chhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 128 GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD--PVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
+++++++..++++++.+|.+..+ |...+.+....|.++ ++++.++++++.+|.+..+|..++.+...
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~a-----------W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHV-----------WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999888 999999999999999 99999999999999999999999999999
Q ss_pred cCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 206 LGQ------REEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 206 ~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
.|+ ++++++++.+++..+|.+..+|..++.++.+
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 988 9999999999999999999999998887753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-20 Score=129.45 Aligned_cols=151 Identities=12% Similarity=0.082 Sum_probs=127.2
Q ss_pred HHHhchhHHHHHHH----------------hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHH
Q psy17412 38 ERKARQDIADHFKA----------------NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101 (240)
Q Consensus 38 ~~~~~~~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 101 (240)
.....|+++.+++. +|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 30 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 109 (208)
T 3urz_A 30 TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR 109 (208)
T ss_dssp HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45567888889998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchh
Q psy17412 102 DCDKALRLDEDNMKAHLYKARAMHSLGQ--REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179 (240)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (240)
.|+++++++|+++.+++.+|.+++..|+ ...+...+++++...|. ...++.+|.++...|++++|+
T Consensus 110 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~a~~~~g~~~~~~~~~~~A~ 177 (208)
T 3urz_A 110 MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM------------QYARYRDGLSKLFTTRYEKAR 177 (208)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH------------HHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch------------hHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999999999987764 45567777776543322 123778899999999999999
Q ss_pred hHHHHHhhcChhhHHHHHHHHH
Q psy17412 180 PDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.+|+++++++|+.. +...+..
T Consensus 178 ~~~~~al~l~P~~~-~~~~l~~ 198 (208)
T 3urz_A 178 NSLQKVILRFPSTE-AQKTLDK 198 (208)
T ss_dssp HHHHHHTTTSCCHH-HHHHHHH
T ss_pred HHHHHHHHhCCCHH-HHHHHHH
Confidence 99999999999743 3333443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=129.41 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=130.4
Q ss_pred cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy17412 76 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQV 155 (240)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 155 (240)
+|.....+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++..
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~----- 75 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY----- 75 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH-----
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH-----
Confidence 3455667889999999999999999999999999999999999999999999999999999999999999 6655
Q ss_pred cCchHHHHHHHHHH-HHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHH
Q psy17412 156 RDSPVLYTNRALTL-LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR--RKLVEN 232 (240)
Q Consensus 156 ~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~ 232 (240)
...++.+. ...++...|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..
T Consensus 76 ------~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 76 ------KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp ------HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred ------HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 44445443 233455668999999999999999999999999999999999999999999999975 558888
Q ss_pred HHHhhh
Q psy17412 233 YTQAFE 238 (240)
Q Consensus 233 l~~~~~ 238 (240)
++.++.
T Consensus 150 l~~~~~ 155 (176)
T 2r5s_A 150 FMDILS 155 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=140.38 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=119.3
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN- 113 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~- 113 (240)
.+..+.++..+|.++...|++++|+.++.++++..+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 34578999999999999999999999999999985543 4588999999999999999999999999875432
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 114 -----MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 114 -----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
..++.++|.++..+|++++|+.++++++++.+... ..+..+.++.++|.++...|++++|+.+++++++.
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-----ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999522110 00122445999999999999999999999999887
Q ss_pred C
Q psy17412 189 D 189 (240)
Q Consensus 189 ~ 189 (240)
.
T Consensus 294 ~ 294 (383)
T 3ulq_A 294 S 294 (383)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-21 Score=129.60 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=58.6
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.|.....++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
.++..+|++++|+..|++++++.|+++
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 555555555555555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=140.39 Aligned_cols=191 Identities=14% Similarity=0.048 Sum_probs=156.4
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccC--------------------
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQL-------------------- 95 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~-------------------- 95 (240)
.+..+..+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 55678899999999999999999999999999986654 3488999999999999
Q ss_pred cCchHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 96 YDPVLPDCDKALRLD------EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 96 ~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
+++|+..+++++... +....++..+|.++...|++++|+..+++++++.+..... +.....+..+|.++
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-----AAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHH
Confidence 999999999988762 4446689999999999999999999999999876553221 11234688999999
Q ss_pred HHhcccCchhhHHHHHhhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHhh
Q psy17412 170 LHLQLYDPVLPDCDKALRLDEDN------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR------RKLVENYTQAF 237 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~ 237 (240)
...|++++|+..++++++..+.. ..++..+|.++...|++++|+.++++++...+.. ..++..++.++
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999999999999998876654 6788899999999999999999999998875543 33555566554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=118.74 Aligned_cols=134 Identities=26% Similarity=0.326 Sum_probs=128.2
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
.+++.+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
.|++++|+..++++++..|.+... +..+|.++...|++++|...+.++++.+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEA-----------WYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999988777 999999999999999999999999998875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=125.87 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=93.2
Q ss_pred HHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHH-H
Q psy17412 91 LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT-L 169 (240)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~ 169 (240)
...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++++.|+++.. +..+|.+ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----------~~~la~~l~ 89 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL-----------YAALATVLY 89 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH-----------HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-----------HHHHHHHHH
Confidence 445677777777777777777777777777777777777777777777777777776665 7777777 6
Q ss_pred HHhccc--CchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 170 LHLQLY--DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 170 ~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
...|++ ++|+..++++++.+|++..++..+|.++...|++++|+.+|++++..+|+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 677777 7777777777777777777777777777777777777777777777777765443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=117.84 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=109.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
|..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC------CCchHHHHHhccCchHHHHHHHHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKY------PTRRKLAIEQVRDSPVLYTNRALTLLH 171 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~la~~~~~ 171 (240)
++..+|++++|+..++++++++ |++... +..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~-----------~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREI-----------DQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH-----------HHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHH-----------HHHHHHHHHh
Confidence 9999999999999999999999 766655 7777766543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=127.32 Aligned_cols=174 Identities=11% Similarity=-0.007 Sum_probs=153.8
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc----CcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ----LYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
.++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 67889999999999999999999999999875 678999999999998 7 89999999999975 568899999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCC--chHHHHHhccCchHHHHHHHHHHHH----hcccCchhhHHHHHhhcC
Q psy17412 120 KARAMHS----LGQREEAKEYVRQLVEKYPT--RRKLAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 120 la~~~~~----~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 189 (240)
+|.++.. .+++++|+.+|+++.+..+. ++.. ++++|.+|.. .+++++|+.+|+++++.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a-----------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~- 158 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA-----------QMLLGLIYASGVHGPEDDVKASEYFKGSSSL- 158 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH-----------HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH-----------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-
Confidence 9999998 89999999999999998883 3555 9999999999 88999999999999998
Q ss_pred hhhHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 190 EDNMKAHLYKARAMHNL-G-----QREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
|.++.+++.+|.+|... | ++++|+.+|+++.+.. ++.+...+.++
T Consensus 159 ~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 159 SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 66677999999999864 3 8999999999999885 45566666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=118.82 Aligned_cols=117 Identities=20% Similarity=0.280 Sum_probs=95.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
|..+..+..+|..++..|++++|+..|+++++++|+++.. +.++|.++...|++++|+..++++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----------~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-----------YSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3456677888888888888888888888888888887766 88888888888888888888888888888
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHhhh
Q psy17412 191 DNMKAHLYKARAMHNLGQREEAKEYIRELVEKY------PTRRKLVENYTQAFE 238 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 238 (240)
+++.+++.+|.++..+|++++|+..|+++++++ |.++.++..+.++.+
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888 888888877777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=128.03 Aligned_cols=145 Identities=9% Similarity=0.004 Sum_probs=122.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
....++.+|..+...|++++|+..|++++ .| ++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 45567899999999999999999999995 33 6889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHH-----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKL-----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
..+|++++|+..++++++..|.+... .....+..+.++.++|.++...|++++|+..++++++.+|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999999999876511 000111223447888888888888888888888888887765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-20 Score=148.00 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=140.9
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 119 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 119 (240)
...|..+..+..+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..
T Consensus 17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh---cccCchhhHHHHHhhcChhhHHHH
Q psy17412 120 KARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL---QLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 120 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+|.++..+|++++|+..++++++.+|++... +.++|.++... |++++|+..++++++.+|.+...+
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYI-----------TAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence 9999999999999999999999999998877 99999999999 999999999999999999987777
Q ss_pred HHHH
Q psy17412 197 LYKA 200 (240)
Q Consensus 197 ~~la 200 (240)
..++
T Consensus 166 ~~l~ 169 (568)
T 2vsy_A 166 AFLS 169 (568)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 7666
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-18 Score=126.92 Aligned_cols=201 Identities=9% Similarity=-0.012 Sum_probs=162.8
Q ss_pred HHHhchhHHHHHHHhHhHHHHhC--CHHHHHHHHHHHHHhcCCChHHHHHHHHHH----HHc---cCcCchHHHHHHHHh
Q psy17412 38 ERKARQDIADHFKANGNKAFQSG--QYEAALVQYDKAIEQVRDSPVLYTNRALTL----LHL---QLYDPVLPDCDKALR 108 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~----~~~---~~~~~A~~~~~~~~~ 108 (240)
....+|+...+|...|.++...| +++++++.++.++..+|++..+|..++.+. ... +++++++..+.++++
T Consensus 59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 45678888888888888888888 888888888888888888888888888888 666 678888888888888
Q ss_pred cCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCchHH-----------------------------HHHhccC
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQRE--EAKEYVRQLVEKYPTRRKL-----------------------------AIEQVRD 157 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~-----------------------------~~~~~~~ 157 (240)
.+|.+..+|..++.+....|.++ +++..++++++.+|.+..+ ++...|.
T Consensus 139 ~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~ 218 (306)
T 3dra_A 139 SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ 218 (306)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS
T ss_pred hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC
Confidence 88888888888888888888887 8888888888888876554 3444566
Q ss_pred chHHHHHHHHHHHHhcccCchh-hHHHHHhhcC---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHH
Q psy17412 158 SPVLYTNRALTLLHLQLYDPVL-PDCDKALRLD---EDNMKAHLYKARAMHNLGQREEAKEYIRELVE-KYPTRRKLVEN 232 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~~~~A~-~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~ 232 (240)
+..+|..++.++...|+...++ ..+.++++.+ |.++.++..++.++.+.|+.++|++.|+.+.. .+|-....|..
T Consensus 219 n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 219 NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 6677888888888888766544 4666666665 77888899999999999999999999999987 79999999988
Q ss_pred HHHhhh
Q psy17412 233 YTQAFE 238 (240)
Q Consensus 233 l~~~~~ 238 (240)
.++.+.
T Consensus 299 ~~~~l~ 304 (306)
T 3dra_A 299 QISKLT 304 (306)
T ss_dssp HHHTCC
T ss_pred HHhhcc
Confidence 877653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-21 Score=126.44 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=60.6
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.|.....++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
.++..+|++++|+..|++++++.|+++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 555555555555555555555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-18 Score=130.48 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=162.2
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-CcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc-C-CH
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL-G-QR 130 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~ 130 (240)
......+..++|++.+.+++..+|++..+|..++.+...+| .+++++..+.+++..+|.+..+|..++.++... + ++
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 33444556679999999999999999999999999999999 599999999999999999999999999999998 8 99
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC--------chhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD--------PVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 131 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
++++..+.++++.+|.+..+ |..++.+....|.++ +++++++++++.+|.+..+|..++.+
T Consensus 142 ~~EL~~~~k~L~~dpkNy~A-----------W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHT-----------WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHH-----------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999888 999999999999999 99999999999999999999999999
Q ss_pred HHHcCC-------HHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 203 MHNLGQ-------REEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 203 ~~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+..+++ ++++++++.+++..+|++..+|..+..++.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999987 799999999999999999999998877764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-19 Score=144.66 Aligned_cols=172 Identities=14% Similarity=0.112 Sum_probs=161.1
Q ss_pred HHhCCH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC----------cCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 57 FQSGQY-EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL----------YDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 57 ~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
...|++ ++|++.+++++..+|++..+|..++.+....|+ ++++++.++++++.+|++..+|..++.++.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344544 678999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HcC--CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc-ccCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 126 SLG--QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 126 ~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
.++ ++++++..++++++.+|.+..+ |..++.+....| .++++++++.++++.+|.+..+|..++.+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~a-----------W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l 187 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHC-----------WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhccccccH-----------HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence 999 7799999999999999999888 999999999999 89999999999999999999999999999
Q ss_pred HHHc--------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 203 MHNL--------------GQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 203 ~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+..+ +.++++++++.+++..+|++..+|..++.++.+
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 8885 668999999999999999999999999888754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-19 Score=121.16 Aligned_cols=134 Identities=22% Similarity=0.349 Sum_probs=122.9
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..+..+..+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHH--HHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY--TNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
+..+|++++|+..++++++..|.+... + ..++..+...|++++|+..+.++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDA-----------KMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999998766 5 44455578889999999888877554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=129.47 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=143.6
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHccCcCchHHHHHHHHhcCccc----
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV------LYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---- 113 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 113 (240)
.....+...+..++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 34455666788899999999999999999998776544 34458899998999999999999999864322
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 114 --MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 114 --~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
..++..+|.++..+|++++|+.+++++++.....+ ...+..+.++.++|.+|...|++++|+.+++++++..+.
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44799999999999999999999999996432110 001122456999999999999999999999999988765
Q ss_pred h------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q psy17412 192 N------MKAHLYKARAMHNLG-QREEAKEYIRELVEKY 223 (240)
Q Consensus 192 ~------~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~ 223 (240)
. ..++..+|.++..+| ++++|+.+|++++.+.
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 4 789999999999999 5799999999999754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-19 Score=125.54 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchH
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPV 160 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (240)
..++.+|.++...|++++|+..|++++ .| ++.+++.+|.++...|++++|+..++++++.+|++...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------- 73 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA---------- 73 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH----------
Confidence 457789999999999999999999996 33 67899999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM----------------KAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
+.++|.++...|++++|+..++++++..|.+. .++..+|.++..+|++++|+.+|++++..+|
T Consensus 74 -~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 74 -YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999776654 9999999999999999999999999999999
Q ss_pred CcHH
Q psy17412 225 TRRK 228 (240)
Q Consensus 225 ~~~~ 228 (240)
++..
T Consensus 153 ~~~~ 156 (213)
T 1hh8_A 153 EPRH 156 (213)
T ss_dssp SGGG
T ss_pred cccc
Confidence 7643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-18 Score=127.94 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=158.1
Q ss_pred HHHhCCHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHccC----------cCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 56 AFQSGQYE-AALVQYDKAIEQVRDSPVLYTNRALTLLHLQL----------YDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 56 ~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
....|++. +|+..+.+++..+|++..+|..++.+....+. +++++..+..++..+|.+..+|..++.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567765 79999999999999999999999999988876 68999999999999999999999999999
Q ss_pred HHcCC--HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc-cCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 125 HSLGQ--REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL-YDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 125 ~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
...++ +++++..+.++++.+|.+..+ |...+.+....|. ++++++++.++++.+|.+..+|..++.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~A-----------W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHC-----------WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99994 899999999999999999888 9999999999998 489999999999999999999999999
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 202 AMHNL--------------GQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 202 ~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++..+ +.++++++++.+++..+|++..+|..+.-++.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99887 56899999999999999999999987766553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=120.59 Aligned_cols=110 Identities=22% Similarity=0.213 Sum_probs=105.8
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..+..+..++.+|..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
|.++..+|++++|+.+|+++++++|++...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 999999999999999999999999998775
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=113.22 Aligned_cols=125 Identities=28% Similarity=0.369 Sum_probs=119.1
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..+..+..+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++...|+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
|.++...|++++|+..++++++..|++... +..+|.++...|+++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETY-----------KSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHH-----------HHHHHHHHHHHhcCC
Confidence 999999999999999999999999998877 999999999998864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-18 Score=125.70 Aligned_cols=186 Identities=17% Similarity=0.137 Sum_probs=166.6
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCC----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC--cCchHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQ----------YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL--YDPVLPDCDK 105 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~ 105 (240)
....+|....+|...+.+....+. +++++.++..++..+|.+..+|..++.+....++ +++++..+.+
T Consensus 56 ~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 135 (331)
T 3dss_A 56 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 135 (331)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 455789999999999999988776 7899999999999999999999999999999995 7899999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh------------
Q psy17412 106 ALRLDEDNMKAHLYKARAMHSLGQ-REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL------------ 172 (240)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------ 172 (240)
+++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+ |..++.++...
T Consensus 136 ~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA-----------W~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 136 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS-----------WHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH-----------HHHHHHHHHHHSCCC------CC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH-----------HHHHHHHHHHhhhcccccccccc
Confidence 999999999999999999999998 699999999999999999888 99999998887
Q ss_pred --cccCchhhHHHHHhhcChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 173 --QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNL-----------GQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 173 --~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.++++++++.+++..+|++..+|+.+.-++... +.++++++.+.++++..|++.-....++
T Consensus 205 ~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 6688999999999999999999998666665554 4588999999999999999865544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=126.73 Aligned_cols=158 Identities=14% Similarity=0.054 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH-----HHhc
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLA-----IEQV 155 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-----~~~~ 155 (240)
......+.+....|+++++.+.+.......+.....+..+|..++..|++++|+..|++++++.|.++... ....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 34445667777889999999988877777777888999999999999999999999999999998876110 0000
Q ss_pred cCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 156 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 156 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
.....++.++|.++...|++++|+.+++++++.+|++..+++.+|.++..+|++++|+.+|++++.++|+++.++..++.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 00124599999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhh
Q psy17412 236 AFE 238 (240)
Q Consensus 236 ~~~ 238 (240)
++.
T Consensus 165 ~~~ 167 (198)
T 2fbn_A 165 CVN 167 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-18 Score=133.12 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=141.5
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCc---
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--- 111 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--- 111 (240)
.+..+.++..+|.++...|++++|+.++.++++..+.. ..++..+|.++...|++++|++++++++.+.+
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 34578899999999999999999999999999986532 45788999999999999999999999998643
Q ss_pred ---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 112 ---DNMKAHLYKARAMHSLGQREEAKEYVRQLVE-----KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 112 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
....++.++|.++..+|++++|+.+++++++ .+|.. +.++.++|.++...|++++|+.+++
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-----------PKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-----------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2356889999999999999999999999999 44444 3449999999999999999999999
Q ss_pred HHhhcChh-----------------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 184 KALRLDED-----------------------------------------NMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 184 ~~l~~~~~-----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
++++..+. ....+..+|.++...|++++|..+|+++++.
T Consensus 286 ~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99876321 1234556788888888888888888887765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=118.80 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
+..+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------- 83 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG--------- 83 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH---------
Confidence 56788999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHh
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA--RAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
+..+|.++...|++++|+..++++++.+|++..++..++ ..+...|++++|+..+.++...
T Consensus 84 --~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 84 --YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999988885544 4488899999999999987654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=125.00 Aligned_cols=132 Identities=13% Similarity=0.076 Sum_probs=117.9
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH-HHHcCCH--
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA-MHSLGQR-- 130 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~-- 130 (240)
..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999 8899998
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 131 EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 131 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
++|+..++++++.+|++... +..+|.++...|++++|+..++++++.+|++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITA-----------LMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999998877 99999999999999999999999999999875544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-20 Score=130.97 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=92.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh----------------HHHHHHHHHHHHccCcCchHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP----------------VLYTNRALTLLHLQLYDPVLP 101 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~la~~~~~~~~~~~A~~ 101 (240)
.....+..+..+..+|..++..|+|++|+..|++++...|.++ .++.++|.++...|++++|+.
T Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 30 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3445566778888889999999999999999999998888776 566666666666666666666
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchh
Q psy17412 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVL 179 (240)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (240)
++++++..+|+++.+++.+|.++..+|++++|+..|++++++.|++... +..++.++...++..++.
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----------~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI-----------RNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666555 666666666666555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=113.16 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=97.5
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-------HH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-------MK 115 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~ 115 (240)
++.+.++..+|..++..|+|++|+..|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999998765 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
++..+|.++..+|++++|+..|++++...|+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 8899999999999999999999999999886
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=113.43 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=83.5
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 112 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
+.+.++..+|..++..|+|++|+.+|+++++++|++... +.++|.++..+|++++|+..++++++++|+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~-----------~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF-----------YNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 345566777777777777777777777777777776666 777777777777777777777777777665
Q ss_pred h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 192 N-------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 192 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
+ ..++..+|.++..+|++++|+.+|++++...|+ ++....+..
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 4 356788888899999999999999999988774 555544443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-19 Score=119.28 Aligned_cols=126 Identities=19% Similarity=0.246 Sum_probs=113.3
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh------------------cCCChHHHHHHHHHHHHccCcCchHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ------------------VRDSPVLYTNRALTLLHLQLYDPVLPDC 103 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 103 (240)
....+..+...|..++..|+|++|+..|.+++.. +|....++.++|.++..+|++++|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3456888999999999999999999999999999 7777889999999999999999999999
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch-HHHHHhccCchHHHHHHHHHHHHhcccCch
Q psy17412 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR-KLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 178 (240)
++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .. ...++.+....++..+.
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-----------~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV-----------AREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHH-----------HHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 44 66777777666555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=113.70 Aligned_cols=122 Identities=23% Similarity=0.364 Sum_probs=115.9
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+.....++.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|.++.+++.+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
.++...|++++|+..++++++..|.+... +..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEA-----------ADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHH-----------HHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHH-----------HHHHHHHHHHhcC
Confidence 99999999999999999999999998777 9999999987764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=113.95 Aligned_cols=121 Identities=20% Similarity=0.162 Sum_probs=90.1
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
|.....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG------ 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH------
Confidence 34466777777777777777777777777777777777777777777777777777777777777777776665
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCC
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 208 (240)
+..+|.++...|++++|+..++++++.+|.+..++..++.++..+|+
T Consensus 87 -----~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 87 -----YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777766653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=135.12 Aligned_cols=165 Identities=13% Similarity=0.026 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHH-------ccCcC-------chHHHHHHHHh-cCcccHHHHHHHHHHHHHc
Q psy17412 63 EAALVQYDKAIEQVRDSPVLYTNRALTLLH-------LQLYD-------PVLPDCDKALR-LDEDNMKAHLYKARAMHSL 127 (240)
Q Consensus 63 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 127 (240)
..++..|++++..+|.++.+|..+|..+.. .|+++ +|...|+++++ ..|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCch-HHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH-HHH
Q psy17412 128 GQREEAKEYVRQLVEKYPTRR-KLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA-MHN 205 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~ 205 (240)
|++++|...|++++++.|.++ .. |..+|.++.+.|++++|+..|.++++..|.....+...+.+ +..
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~-----------~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLV-----------YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 999999999999999999874 35 99999999999999999999999999988877777766665 346
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 206 LGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.|++++|...|+++++.+|+++.+|..++.++.
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999987754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=116.20 Aligned_cols=106 Identities=25% Similarity=0.299 Sum_probs=100.3
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC-------ChH-----HHHHHHHHHHHccCcCchHHHHHHHHhc---
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD-------SPV-----LYTNRALTLLHLQLYDPVLPDCDKALRL--- 109 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 109 (240)
.+..+...|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..+++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5778899999999999999999999999999999 433 9999999999999999999999999999
Q ss_pred ----CcccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 110 ----DEDNMKAH----LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 110 ----~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+|++..+| +++|.++..+|++++|+..|++++++.|++...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999987655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=117.74 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS 158 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (240)
.+..+..+|.+++..|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..++++++++|++...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------- 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA-------- 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH--------
Confidence 345566666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
++.+|.++...|++++|+..|+++++++|++...+...+
T Consensus 82 ---~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 82 ---WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred ---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 666666666666666666666666666666655444444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-20 Score=145.53 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
..++.++|.++..+|++++|+.+++++++++|++... ++++|.++..+|++++|+..|+++++++|++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----------~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG-----------LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH-----------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 3455555555555555555555555555555554444 55555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q psy17412 194 KAHLYKARAMHNLGQREEAK 213 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~ 213 (240)
.++..++.++..+|++++|.
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=128.07 Aligned_cols=186 Identities=11% Similarity=0.030 Sum_probs=161.7
Q ss_pred HHHhchhHHHHHHHh-------HhHHHHhCCHHHHHHHHHHHHHhcCCChHH---------------------HHHHHHH
Q psy17412 38 ERKARQDIADHFKAN-------GNKAFQSGQYEAALVQYDKAIEQVRDSPVL---------------------YTNRALT 89 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------~~~la~~ 89 (240)
....+|+.+++|..+ +.++...++..+++..+++.+.+.|..... ...++.+
T Consensus 32 a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 32 ITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC 111 (282)
T ss_dssp HHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred HHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence 566789999999999 899999999999999999999987765433 3447889
Q ss_pred HHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 90 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
+...|++++|.+.|..++...|.+. +.+.+|.++++.++|++|+..++.+....+.. . ...+++.+|.++
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~-~--------~~~a~~~LG~al 181 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF-L--------AGAAGVAHGVAA 181 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH-H--------HHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc-c--------HHHHHHHHHHHH
Confidence 9999999999999999999999988 99999999999999999999998776643221 0 023499999999
Q ss_pred HHhcccCchhhHHHHHhhcC--hh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 170 LHLQLYDPVLPDCDKALRLD--ED-NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
..+|++++|+.+|++++.-. |. .+++++.+|.++..+|+.++|...|++++..+|+ +.++..+.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999998654 55 6789999999999999999999999999999999 88777665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=113.31 Aligned_cols=122 Identities=20% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
|..+..+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------ 82 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA------ 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH------
Confidence 34455666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
+..+|.++...|++++|+..++++++.+|++..++..++.++..+|++
T Consensus 83 -----~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 -----YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 666666666666666666666666666666666666666666666553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-18 Score=120.54 Aligned_cols=157 Identities=15% Similarity=0.008 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC----CHHHHHHHHH
Q psy17412 63 EAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG----QREEAKEYVR 138 (240)
Q Consensus 63 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~ 138 (240)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.++.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578889998876 68999999999999999999999999999875 578999999999998 7 9999999999
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHH----hcccCchhhHHHHHhhcCh--hhHHHHHHHHHHHHH----cCC
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDE--DNMKAHLYKARAMHN----LGQ 208 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~g~ 208 (240)
++.+ +.++.. ++++|.+|.. .+++++|+.+|+++.+..| .++.+++.+|.+|.. .++
T Consensus 78 ~A~~--~g~~~a-----------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 78 KAVE--AGSKSG-----------EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp HHHH--TTCHHH-----------HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred HHHH--CCCHHH-----------HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 9976 455555 9999999998 8899999999999999988 569999999999999 899
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 209 REEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 209 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+++|+.+|+++... |.++.+...++.++.
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 99999999999998 677788899988875
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=141.52 Aligned_cols=139 Identities=21% Similarity=0.363 Sum_probs=124.8
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+..+..+..+|..+...|++++|++.|+++++.+|++..++.++|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHH--HHHhcccCchhhHHH-----------HHhhcC
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT--LLHLQLYDPVLPDCD-----------KALRLD 189 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~~l~~~ 189 (240)
++..+|++++|+..+++++++.|++... +..++.+ +...|++++|++.++ +++...
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~-----------~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~ 151 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDA-----------KMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIE 151 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTH-----------HHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccc
Confidence 9999999999999999999999998777 8888888 889999999999999 777776
Q ss_pred hhh
Q psy17412 190 EDN 192 (240)
Q Consensus 190 ~~~ 192 (240)
|+.
T Consensus 152 ~~~ 154 (477)
T 1wao_1 152 DEY 154 (477)
T ss_dssp TTC
T ss_pred ccc
Confidence 653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=113.12 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEK--------YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
.+..+..+|..++..|++++|+..|++++.+ .|.++.. ....|..+.++.++|.++...|++++|+..+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-VELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3567888899999999999999999999888 4444332 233445566799999999999999999999999
Q ss_pred HhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHhh
Q psy17412 185 ALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR-KLVENYTQAF 237 (240)
Q Consensus 185 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 237 (240)
+++++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...+..+.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 6666666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=110.43 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=93.5
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCch
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
.|++++|+..++++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999864
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=115.71 Aligned_cols=120 Identities=24% Similarity=0.227 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc----
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL---- 188 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---- 188 (240)
...+..+|..++..|+|++|+..|+++++++|+++.. .+...|.++.+|.++|.++..+|+|++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4567888999999999999999999999999884221 00011123347999999999999999999999999999
Q ss_pred ---ChhhHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 189 ---DEDNMKAH----LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 189 ---~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+...+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 9999999999999999999999999999876544433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-18 Score=133.26 Aligned_cols=130 Identities=23% Similarity=0.298 Sum_probs=119.3
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHHccCcCchHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---------------PVLYTNRALTLLHLQLYDPVLPDCDK 105 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~ 105 (240)
..+..+..+..+|..++..|+|++|+..|+++++.+|.+ ..++.++|.|+..+|++++|+..|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456688899999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhH
Q psy17412 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181 (240)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (240)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++... +..++.++...++++++...
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a-----------~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA-----------RLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877 99999999999999887653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-18 Score=111.12 Aligned_cols=104 Identities=15% Similarity=0.081 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
|.++..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|+++..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------ 79 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA------ 79 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH------
Confidence 33444455555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
+..+|.++...|++++|+..+.++++.+|+
T Consensus 80 -----~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 80 -----HFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 455555555555555555555555544444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=115.17 Aligned_cols=162 Identities=12% Similarity=0.024 Sum_probs=130.6
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh------cCcccHHHHHHHHHHHHHcCC
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR------LDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~~~~~~ 129 (240)
.+..|++++|.+.++......+....++..+|.++...|++++|+..+++++. ..+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 35689999999965555443335678999999999999999999999999998 445667899999999999999
Q ss_pred HHHHHHHHHHHHHc---CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh------hHHHHHHHH
Q psy17412 130 REEAKEYVRQLVEK---YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------NMKAHLYKA 200 (240)
Q Consensus 130 ~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la 200 (240)
+++|+..+++++.+ .++++. ....++.++|.++...|++++|+..++++++..+. ...++..+|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPL-------AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHH-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999988 442221 11456899999999999999999999999876432 244578999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 201 RAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
.++...|++++|..++++++.+..
T Consensus 155 ~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999997653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=128.34 Aligned_cols=147 Identities=15% Similarity=0.065 Sum_probs=128.3
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 156 (240)
|.++..+..+|..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|++...
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------ 74 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA------ 74 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH------
Confidence 56678899999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH-----HHH--------------------------HHHHHHHHH
Q psy17412 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM-----KAH--------------------------LYKARAMHN 205 (240)
Q Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~--------------------------~~la~~~~~ 205 (240)
++.+|.++...|++++|+..|+++++++|++. .++ ..++.+ .
T Consensus 75 -----~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 75 -----HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--H
Confidence 99999999999999999999999999988651 111 122222 3
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 206 LGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
.|++++|++.++++++.+|++......+..+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACI 178 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHH
Confidence 6899999999999999999887666665544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=104.93 Aligned_cols=115 Identities=23% Similarity=0.205 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
.+..++.+|.++...|++++|+..+++++...|.++.. +..+|.++...|++++|+..++++++.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL-----------YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-----------HHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 35667778888888888888888888888888777666 8888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.++..+|.++...|++++|..+++++++.+|+++.++..++.+..
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 8888888888888888888888888888888888888777776643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=110.75 Aligned_cols=105 Identities=30% Similarity=0.451 Sum_probs=80.3
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+..+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 44566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.++..+|++++|+..+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7777777777777777777777665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-17 Score=104.45 Aligned_cols=114 Identities=27% Similarity=0.269 Sum_probs=108.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
.+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
...|++++|...++++++..|+++.. +..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQL-----------KEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHH-----------HHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHH-----------HHHHHHhh
Confidence 99999999999999999999998777 77777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=105.74 Aligned_cols=105 Identities=27% Similarity=0.366 Sum_probs=55.8
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
+..++.+|..+...|++++|+..|++++...|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
..|++++|+..++++++..|+++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~ 113 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEA 113 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 5555555555555555555544444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=103.50 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=84.2
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.....+.....+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++
T Consensus 35 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 114 (125)
T 1na0_A 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114 (125)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q psy17412 118 LYKARAMHSLG 128 (240)
Q Consensus 118 ~~la~~~~~~~ 128 (240)
..+|.++...|
T Consensus 115 ~~l~~~~~~~g 125 (125)
T 1na0_A 115 QNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 99999887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-18 Score=108.72 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
++.+|..+...|++++|+..++++++.+|++... +..+|.++...|++++|+..|+++++++|+++.++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a-----------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 88 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA-----------WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4455555555555555555555555555555554 55555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
..+|.++...|++++|+..++++++.+|++
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 555555555555555555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=131.87 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=88.8
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
.+..+..+..+|..++..|+|++|+..|++++...|++.. +...+++.++...+. ..++.++|
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla 237 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHH
Confidence 4456788999999999999999999999999999887642 122233333322221 23677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHH
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 201 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 201 (240)
.++..+|++++|+.+++++++++|++... ++++|.++...|++++|+..|+++++++|++..++..++.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----------~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKA-----------LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 88888888888888888888888877766 8888888888888888888888888888888888888777
Q ss_pred H-HHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 202 A-MHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 202 ~-~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
+ ....+..+++...|.+++...|.++.
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 7 44456677777788888887777654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=122.21 Aligned_cols=181 Identities=11% Similarity=0.005 Sum_probs=155.2
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHH-------HHHHHHccCcCchHHHHHHHHhcCcccH---
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR-------ALTLLHLQLYDPVLPDCDKALRLDEDNM--- 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 114 (240)
....++..|.-+ ..+++..|.+.|.+++..+|+...+|..+ +.++...++..+++..+++.+.+.|...
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 445566666665 68999999999999999999999999999 8999999999999999999999877543
Q ss_pred ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 115 ------------------KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 115 ------------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
++...++.++...|++++|...|..++...|.+. . .+.+|.++.+.++++
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~-----------~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-V-----------AWMKAVVYGAAERWT 152 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-H-----------HHHHHHHHHHTTCHH
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-H-----------HHHHHHHHHHcCCHH
Confidence 3445588999999999999999999998888766 6 899999999999999
Q ss_pred chhhHHHHHhhcC-hhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHhhh
Q psy17412 177 PVLPDCDKALRLD-EDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKY--PT-RRKLVENYTQAFE 238 (240)
Q Consensus 177 ~A~~~~~~~l~~~-~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~ 238 (240)
+|+..|+.+.... |.. ..+++.+|.++..+|++++|+.+|+++..-. |. .++++..++.++.
T Consensus 153 dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 153 DVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp HHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 9999999887763 332 4589999999999999999999999998543 54 5667787777765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=108.37 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=105.4
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
..|.....++.+|..+...|++++|+..|+++++..|++... ..++..+|.++...|++++|+..++++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQ--------AVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHH--------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 446778888999999999999999999999999988886221 233889999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 189 DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 189 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+|+++.++..+|.++..+|++++|+.+|++++..+|+++.++..+.++.++
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 998899999999999999999999999999999999999988888877653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-16 Score=124.83 Aligned_cols=173 Identities=14% Similarity=-0.045 Sum_probs=111.3
Q ss_pred HHHHHHhHhHHHH----hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-----cCcCchHHHHHHHHhcCcccHHH
Q psy17412 46 ADHFKANGNKAFQ----SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-----QLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 46 ~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
+.+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++++. .++.+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a 330 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATA 330 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHH
Confidence 4444555555554 45555555555555433 3344555555555554 5555555555555543 23345
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH----hcccCchhhHHHHHhhcC
Q psy17412 117 HLYKARAMHSLG---QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 117 ~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 189 (240)
++.+|.++...| ++++|+.+|+++++. . ++..++++|.+|.. .+++++|+.+|+++.+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~-----------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G-----------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C-----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 555555555533 455555555555544 2 24458889999888 788899999999988754
Q ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHhh
Q psy17412 190 EDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPT---RRKLVENYTQAF 237 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 237 (240)
++.++..+|.+|.. .+++++|+.+|++++..+|+ ++.+...++.+.
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 57788899999988 88999999999999988844 777777776654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=127.85 Aligned_cols=136 Identities=10% Similarity=0.052 Sum_probs=114.9
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDED------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS 158 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (240)
..|.+|...|++++|+..|.+++.+.+. ...++..+|.++..+|++++|+.+|++++++.+..... ...
T Consensus 41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-----~~~ 115 (307)
T 2ifu_A 41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP-----DTA 115 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-----HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-----HHH
Confidence 3477899999999999999999988643 25688999999999999999999999999985432111 112
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
...+.++|.++.. |++++|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|++++.+.|.+
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 4568999999999 99999999999999987753 6788999999999999999999999999986644
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=126.12 Aligned_cols=172 Identities=10% Similarity=-0.022 Sum_probs=149.4
Q ss_pred HHHHHHHhHhHHHHhC---CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc----cCcCchHHHHHHHHhcCcccHHHH
Q psy17412 45 IADHFKANGNKAFQSG---QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL----QLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
++.+++.+|.++...| ++++|+..|+++.+..|.....++++|.+|... +++++|+.+|+++. |.++.++
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~ 251 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW 251 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 4448999999999999 999999999999999999988889999999765 68999999999998 8999999
Q ss_pred HHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc-----ccCchhhHHHHHhhcC
Q psy17412 118 LYKARA-M--HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ-----LYDPVLPDCDKALRLD 189 (240)
Q Consensus 118 ~~la~~-~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~~ 189 (240)
+.+|.+ + ...+++++|+.+|+++.+.. ++.. ++++|.+|. .| ++++|+.+|+++.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A-----------~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRA-----------ELLLGKLYY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHH-----------HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHH-----------HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence 999998 4 57899999999999998754 5555 999999998 55 8999999999998
Q ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 190 EDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+.++.+++.+|.+|.. ..++++|+.+|+++.+. .++.+...++.++.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFS 365 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 8889999999988877 44999999999998864 56777788887764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-15 Score=121.69 Aligned_cols=160 Identities=15% Similarity=0.027 Sum_probs=90.0
Q ss_pred hhHHHHHHHhHhHHHH----hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCcCchHHHHHHHHhcCcccH
Q psy17412 43 QDIADHFKANGNKAFQ----SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 114 (240)
+.++.+++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4455666666666666 66666666666666654 455666666666666 66666666666666653 355
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH----hcccCchhhHHHHHh
Q psy17412 115 KAHLYKARAMHS----LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKAL 186 (240)
Q Consensus 115 ~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l 186 (240)
.+++.+|.++.. .+++++|+.+|+++.+.. ++.. +..+|.+|.. .+++++|+.+|++++
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a-----------~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSG-----------QQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH-----------HHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH-----------HHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 666666666666 566666666666665542 2222 4444444444 344444444444444
Q ss_pred hcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy17412 187 RLDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVE 221 (240)
Q Consensus 187 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~ 221 (240)
+. .++.++..+|.+|.. .+++++|+.+|+++..
T Consensus 179 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 179 EQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 43 234444444444444 4444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=104.01 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=108.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-------HHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-------MKA 116 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 116 (240)
..+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
++.+|.++...|++++|+..++++++..|+ +.. ...++.+....++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~-----------~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDV-----------LKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHH-----------HHHHHHHHHHHHH
Confidence 999999999999999999999999999984 555 7777777666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-16 Score=115.43 Aligned_cols=175 Identities=11% Similarity=0.002 Sum_probs=147.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc------cHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVR--DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------NMK 115 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 115 (240)
.....+..+|.++...|++++|++.+.+.+..+| ++..++..++.++...|+.+.|.+.++++.+.+|+ ...
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence 4455667899999999999999999999999987 78899999999999999999999999999999883 333
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc-----
Q psy17412 116 AHLYKARAMHSLG--QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL----- 188 (240)
Q Consensus 116 ~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----- 188 (240)
....-|++....| ++.+|...|+++....|+.... ..+++ ++.++|++++|...++.+++.
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~---------~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ---------LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH---------HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH---------HHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence 3444455577667 9999999999998888862221 11334 899999999999999988876
Q ss_pred -----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 189 -----DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 189 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
+|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+...
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 47799999999999999998 8999999999999999876544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-18 Score=130.45 Aligned_cols=76 Identities=25% Similarity=0.366 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+.++|.++...|++++|+..++++++.+|++..+++++|.++..+|++++|+.+|+++++++|+++.++..++.+.
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=104.07 Aligned_cols=104 Identities=12% Similarity=0.082 Sum_probs=98.7
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---HHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP---VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---MKAHLYK 120 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 120 (240)
..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..+++++...|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 799999999999999999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
|.++..+|++++|+..++++++..|+++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 999999999999999999999999997765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=104.38 Aligned_cols=111 Identities=12% Similarity=0.093 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh---
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN--- 192 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--- 192 (240)
+++.+|.++...|++++|+..++++++..|+++.. +.+++.+|.++...|++++|+..++++++.+|++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT--------PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 34566666666666666766666666666665521 1226666666767777777777777776666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.+++.+|.++..+|++++|+..|++++..+|+++.+.....
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 666677777777777777777777777777776665554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=118.12 Aligned_cols=161 Identities=11% Similarity=0.001 Sum_probs=151.4
Q ss_pred HHHhchhHHHHHHHhHhHHHHhC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-c-CcCchHHHHHHHHhcCcccH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSG-QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL-Q-LYDPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~~~~~~~~~~~~ 114 (240)
....+|+...+|..++.++...| .+++++..+++++..+|++..+|..++.+.... + +++++++.+.++++.+|.+.
T Consensus 80 ~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy 159 (349)
T 3q7a_A 80 IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY 159 (349)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH
T ss_pred HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH
Confidence 46678999999999999999999 599999999999999999999999999999998 8 89999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc-------cCchh
Q psy17412 115 KAHLYKARAMHSLGQRE--------EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL-------YDPVL 179 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~~~A~ 179 (240)
.+|..++.+....|.++ +++..++++++.+|.+..+ |..++.++...++ +++++
T Consensus 160 ~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA-----------W~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 160 HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA-----------WGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHhccccccchHHHHHHH
Confidence 99999999999999888 9999999999999999888 9999999999887 68999
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 180 PDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
+++++++..+|++..+|..+..++...|+.
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998888887764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-17 Score=123.88 Aligned_cols=126 Identities=19% Similarity=0.234 Sum_probs=117.9
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHH----------------hcCCChHHHHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIE----------------QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
..+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+.++++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4567899999999999999999999999999 677778999999999999999999999999999
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhh
Q psy17412 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 180 (240)
Q Consensus 108 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (240)
+++|+++.+++.+|.++..+|++++|+..|++++++.|++... +..++.++...++++++.+
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~-----------~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI-----------QAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877 9999999999888877654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=107.10 Aligned_cols=109 Identities=27% Similarity=0.423 Sum_probs=104.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
.+..+..++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++...|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45678889999999999999999999999999999987 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
.+|.++..+|++++|+..++++++++|++...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 99999999999999999999999999998777
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-16 Score=120.76 Aligned_cols=176 Identities=12% Similarity=0.050 Sum_probs=145.9
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc------
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-----VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------ 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------ 113 (240)
....+...|..+...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 456778889999999999999999999999887553 267889999999999999999999999876533
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh--
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-- 191 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-- 191 (240)
..++..+|.++...|++++|+..+++++...+..... ..+.....+.++|.++...|++++|...+.+++...+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE---QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT---TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 2357889999999999999999999999875321000 00112345888999999999999999999999987654
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 192 ---NMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 192 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
...++..+|.++...|++++|..++++++...
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999998774
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=128.75 Aligned_cols=163 Identities=16% Similarity=0.153 Sum_probs=153.7
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCC----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc--CcCchHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQ----------YEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ--LYDPVLPDCDK 105 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~ 105 (240)
....+|+...+|..++.++...|+ ++++++.+++++..+|++..+|..++.+....+ +++++++.+.+
T Consensus 55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k 134 (567)
T 1dce_A 55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 134 (567)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 456789999999999999999988 999999999999999999999999999999999 56999999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh------------
Q psy17412 106 ALRLDEDNMKAHLYKARAMHSLG-QREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL------------ 172 (240)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------ 172 (240)
+++.+|.+..+|..++.+....| .+++++++++++++.+|.+..+ |..++.++...
T Consensus 135 ~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa-----------W~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS-----------WHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH-----------HHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH-----------HHHHHHHHHhhcccccccccccc
Confidence 99999999999999999999999 9999999999999999999888 99999998885
Q ss_pred --cccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHH
Q psy17412 173 --QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREE 211 (240)
Q Consensus 173 --~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 211 (240)
+.++++++++.+++..+|++..+|+.++.++...|++++
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 667899999999999999999999999999999888655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=102.50 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 112 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
..+..++.+|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+.+++++++..|.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY-----------ITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH-----------HHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 345667778888888888888888888888887776666 778888888888888888888888887776
Q ss_pred h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 192 N-------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 192 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
+ ..++..+|.++...|++++|+.+|++++...| ++..+..++.+..
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6 77888888888888888888888888888887 5676766666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-19 Score=139.99 Aligned_cols=136 Identities=14% Similarity=0.049 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|++...
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--------- 76 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG--------- 76 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---------
Confidence 45667788899999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCc
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA--MHNLGQREEAKEYIR-----------ELVEKYPTR 226 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~ 226 (240)
+.++|.++...|++++|+..++++++.+|++..++..++.+ +...|++++|+..++ +++...|+.
T Consensus 77 --~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 77 --YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999999999999988 889999999999999 777776654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=103.71 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=53.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
|+++.++..+|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++.+|
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY-----------WLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH-----------HHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 3444444455555555555555555555555555544443 55555555555555555555555555555
Q ss_pred h--hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q psy17412 191 D--NMKAHLYKARAMHNL-GQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 191 ~--~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~ 225 (240)
. +..++..+|.++..+ |++++|+.++++++...|.
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 5 555555555555555 5555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=104.71 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=87.0
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcC----------chHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYD----------PVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
-+.+.|++|+..++++++.+|+++.+|.++|.++...++++ +|+..|+++++++|++..+++++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999998875 99999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHHcCCCchHH
Q psy17412 127 LG-----------QREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 127 ~~-----------~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
+| ++++|+.+|+++++++|++...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 85 8999999999999999986543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=101.63 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--chHHHHHh
Q psy17412 77 RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT--RRKLAIEQ 154 (240)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~ 154 (240)
|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|. +...
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---- 78 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV---- 78 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH----
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH----
Confidence 4444555555555555555555555555555555555555555555555555555555555555555555 4444
Q ss_pred ccCchHHHHHHHHHHHHh-cccCchhhHHHHHhhcChh
Q psy17412 155 VRDSPVLYTNRALTLLHL-QLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~ 191 (240)
+..+|.++... |++++|++++++++...|.
T Consensus 79 -------~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 79 -------WAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp -------HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred -------HHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 55555555555 5555555555555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=121.00 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHh----------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALR----------------LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
...+..+|..++..|++++|+..|+++++ ..|....++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688899999999999999999999998 67777889999999999999999999999999999
Q ss_pred CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 144 YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEY 215 (240)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 215 (240)
+|++... ++.+|.++...|++++|+..|+++++++|++..++..++.++..+++.+++...
T Consensus 303 ~p~~~~a-----------~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKA-----------LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHH-----------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988777 999999999999999999999999999999999999999999888888877653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=104.55 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=85.2
Q ss_pred HhCCHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 58 QSGQYEAALVQYDKAIEQ---VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 58 ~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
..|++++|+..|+++++. +|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCchHH
Q psy17412 135 EYVRQLVEKYPTRRKL 150 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~ 150 (240)
..+++++...|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999999999998766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=102.97 Aligned_cols=98 Identities=21% Similarity=0.264 Sum_probs=81.1
Q ss_pred HccCcCchHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHH
Q psy17412 92 HLQLYDPVLPDCDKALRL---DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT 168 (240)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 168 (240)
..|++++|+..|+++++. +|+++.++..+|.++..+|++++|+..++++++.+|+++.. +..+|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----------~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL-----------RVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-----------HHHHHHH
Confidence 468899999999999998 58888899999999999999999999999999999988777 8999999
Q ss_pred HHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 169 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
+...|++++|+..++++++..|+++.+.....
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999999999999998888877654333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-15 Score=115.22 Aligned_cols=174 Identities=11% Similarity=0.046 Sum_probs=130.2
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHccCcCchHHHHHHHHhcC--------c
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------VLYTNRALTLLHLQLYDPVLPDCDKALRLD--------E 111 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~ 111 (240)
...+..+|..+...|++++|...+++++...|... .++..+|.++...|++++|+..+++++... |
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 132 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence 44678889999999999999999999998766442 346788999999999999999999998764 3
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 112 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
....++..+|.++...|++++|..++++++...+..... .....+..+|.++...|++++|...+++++...+.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 345677889999999999999999999999887763211 12345778888888888888888888888765322
Q ss_pred --h-HH--HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 192 --N-MK--AH--LYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 192 --~-~~--~~--~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
. .. .. ..++.++...|++++|..++++++...|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 207 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred cCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC
Confidence 1 11 11 13445577888888888888887766654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=120.45 Aligned_cols=171 Identities=13% Similarity=0.074 Sum_probs=139.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHcc---CcCchHHHHHHHHhcCcccHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAA----LVQYDKAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A----~~~~~~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.+.+++.+|.++...+.++++ ..+++.+...+ +.+++.+|.+|...| ++++|+..|+++.+..|.....+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 456777777777777744443 33444443333 448889999999999 99999999999999999888888
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHH-H--HHhcccCchhhHHHHHhhcCh
Q psy17412 118 LYKARAMHSL----GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT-L--LHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 118 ~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~~l~~~~ 190 (240)
+.+|.++... +++++|+.+|+++. |.++.. ++++|.+ + ...+++++|+.+|+++.+.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a-----------~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-- 280 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS-----------WVSLAQLLYDFPELGDVEQMMKYLDNGRAA-- 280 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH-----------HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH-----------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--
Confidence 9999998765 78999999999987 777666 9999998 4 4678999999999999865
Q ss_pred hhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 191 DNMKAHLYKARAMHNLG-----QREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 191 ~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.++.+++.+|.+|. .| ++++|+.+|+++. +.++.+...++.++.
T Consensus 281 g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 281 DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 47889999999998 66 9999999999988 889999999998875
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=104.19 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=92.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC----------chhhHHHHHhhcChhhHH
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD----------PVLPDCDKALRLDEDNMK 194 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~l~~~~~~~~ 194 (240)
.+.+.+++|+..++++++++|+++.. +.++|.++...++++ +|+..|+++++++|++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea-----------~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADN-----------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHH-----------HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH
Confidence 45678999999999999999999888 999999999998875 999999999999999999
Q ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy17412 195 AHLYKARAMHNLG-----------QREEAKEYIRELVEKYPTRRKLVENYTQ 235 (240)
Q Consensus 195 ~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 235 (240)
+++++|.+|..+| ++++|+.+|+++++++|++...+..+..
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999885 8999999999999999999887776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=107.41 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=64.3
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHccCcCchHHHHHHHHhcCccc----
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---- 113 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 113 (240)
..+..+..+|..+...|++++|+.++++++...+... .++..+|.++...|++++|+..+++++...+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 4566778888888888888888888888887755322 356666666666666666666666666544321
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 114 --MKAHLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 114 --~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
..++..+|.++...|++++|+.+++++++.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555555555556666665555555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.4e-16 Score=103.96 Aligned_cols=141 Identities=17% Similarity=0.100 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHH
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIE 153 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 153 (240)
..++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++++.+.....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--- 85 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR--- 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---
Confidence 5678899999999999999999999999876543 2488999999999999999999999999876542111
Q ss_pred hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 154 QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE------DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
+....++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+.++++++++...
T Consensus 86 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 86 --AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 11245689999999999999999999999987743 23677899999999999999999999999987544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-15 Score=125.37 Aligned_cols=175 Identities=14% Similarity=0.094 Sum_probs=141.9
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc--------
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-------- 112 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------- 112 (240)
+....+.+|+.+|..+...|++++|++.|.++ +++..+..+|.++.+.|++++|++++..+.+..++
T Consensus 1100 ervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1100 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred HhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 34567889999999999999999999999776 77888999999999999999999999887654422
Q ss_pred -------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc
Q psy17412 113 -------------------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 113 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 173 (240)
+...+..+|..+...|+|++|..+|.++ + . |..+|.++.++|
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----~----n-----------y~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----S----N-----------FGRLASTLVHLG 1235 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----h----H-----------HHHHHHHHHHhC
Confidence 1234566888888888888888888875 1 2 899999999999
Q ss_pred ccCchhhHHHHHhhcCh-------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 174 LYDPVLPDCDKALRLDE-------------------------DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 174 ~~~~A~~~~~~~l~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
++++|++.+.++....+ .+++.+..++..|...|.+++|+.++++++.+++.+..
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 99999999988855433 12344557788899999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy17412 229 LVENYTQAFEQ 239 (240)
Q Consensus 229 ~~~~l~~~~~~ 239 (240)
.+..++.++.+
T Consensus 1316 mftELaiLyaK 1326 (1630)
T 1xi4_A 1316 MFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHHh
Confidence 99888877653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=107.51 Aligned_cols=143 Identities=7% Similarity=-0.079 Sum_probs=120.6
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc------Cc
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQ------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL------DE 111 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~ 111 (240)
..+..+..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+..+++++.. .+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 67889999999999999999999999999994 3445678999999999999999999999999987 33
Q ss_pred -ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcCh
Q psy17412 112 -DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 112 -~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 190 (240)
....++..+|.++..+|++++|+.++++++.+.+..... ......+..+|.++...|++++|+..+++++++..
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ-----VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch-----HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999864321111 11234578999999999999999999999998754
Q ss_pred h
Q psy17412 191 D 191 (240)
Q Consensus 191 ~ 191 (240)
.
T Consensus 179 ~ 179 (203)
T 3gw4_A 179 E 179 (203)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-15 Score=109.24 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=126.2
Q ss_pred cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy17412 76 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM------KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149 (240)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 149 (240)
.|.....+...+..+...|++++|++.+.+++...+... ..++.+|.++...|++++|+..++++++..+....
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344456677888999999999999999999998776543 35677899999999999999999999987665321
Q ss_pred HHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhh---cChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 150 LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR---LDEDN----MKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 150 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
. .....++.++|.+|...|++++|+.+++++++ ..|++ ..++.++|.++..+|++++|+.++++++..
T Consensus 151 ~-----~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 151 V-----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp T-----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 01234699999999999999999999999994 34432 368999999999999999999999999987
Q ss_pred CCC------cHHHHHHHHHhhh
Q psy17412 223 YPT------RRKLVENYTQAFE 238 (240)
Q Consensus 223 ~p~------~~~~~~~l~~~~~ 238 (240)
.+. ...++..++.++.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~ 247 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHH
Confidence 542 1566777777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=113.54 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=113.7
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhc-------CcccH
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRL-------DEDNM 114 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~ 114 (240)
.+..+|..+...+++++|+.+|++++...+.. ..++.++|.+|...|++++|+.+|+++++. .+...
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 44468999999999999999999999975433 337899999999999999999999999942 23445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc-cCchhhHHHHHhhcC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL-YDPVLPDCDKALRLD 189 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~ 189 (240)
.+++++|.++..+|++++|+.++++++++.+... .....+.++.++|.++...|+ +++|+.++++++.+.
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-----SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-----cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998765431 112235669999999999995 599999999998764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=117.32 Aligned_cols=172 Identities=10% Similarity=0.029 Sum_probs=142.0
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-----------------HHHHHHHHHHHHccCcCchHHHHHHHHhc
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-----------------VLYTNRALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
.+.+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|.+.+.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999877642 35789999999999999999999999876
Q ss_pred Cccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 110 DEDN------MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 110 ~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
.+.. ..+...+|.++...|++++|+..+++++...+... .......++.++|.++...|+|++|+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-----RVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-----CCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 5432 23566778888889999999999999987644321 112234568999999999999999999999
Q ss_pred HHhhc------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 184 KALRL------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 184 ~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+++.. .+....++..+|.++..+|++++|..++++++...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 98764 34567899999999999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-14 Score=103.89 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 65 ALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE--DNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 65 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
|+..+++.+...+.+...+..+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.+++..+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55666666665555566778999999999999999999999999887 8899999999999999999999999999999
Q ss_pred cCCC-----chHHHHHhccCchHHHHHHHHHHHHhc--ccCchhhHHHHHhhcChh--hHHHHHHHHHHHHHcCCHHHHH
Q psy17412 143 KYPT-----RRKLAIEQVRDSPVLYTNRALTLLHLQ--LYDPVLPDCDKALRLDED--NMKAHLYKARAMHNLGQREEAK 213 (240)
Q Consensus 143 ~~~~-----~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~ 213 (240)
.+|+ +... +...-|.+....| ++.+|...|+++.+..|+ ....+++ +++.+|++++|.
T Consensus 165 ~~~d~~~~~d~~l----------~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe 231 (310)
T 3mv2_B 165 AIEDTVSGDNEMI----------LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQ 231 (310)
T ss_dssp HSCHHHHHHHHHH----------HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHH
T ss_pred cCccccccchHHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHH
Confidence 9883 2211 1333344466666 999999999999998887 3334444 899999999999
Q ss_pred HHHHHHHHh----------CCCcHHHHHHHHH
Q psy17412 214 EYIRELVEK----------YPTRRKLVENYTQ 235 (240)
Q Consensus 214 ~~~~~~~~~----------~p~~~~~~~~l~~ 235 (240)
..++.+++. +|+++++..++..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 999987776 4889998866643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-15 Score=95.75 Aligned_cols=95 Identities=26% Similarity=0.403 Sum_probs=88.4
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc------HHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------MKAHL 118 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 118 (240)
.+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..+++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQ 139 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~ 139 (240)
.+|.++..+|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988877665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=92.47 Aligned_cols=102 Identities=16% Similarity=0.075 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCc
Q psy17412 79 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDS 158 (240)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (240)
++..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|++... ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-----AIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH-----HHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH-----HHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999997111 001
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
..++..+|.++...|+++.|+..+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 223899999999999999998877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-13 Score=109.24 Aligned_cols=187 Identities=6% Similarity=-0.057 Sum_probs=149.9
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC------
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAAL-VQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD------ 110 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 110 (240)
.....|..+..|+..+......|+.++|. ..|++++...|.+..+|...+......|++++|...|++++...
T Consensus 335 aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 335 AAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 45667888999999999999999999997 99999999999999999999999999999999999999998752
Q ss_pred -----cc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCchHHHHHhccCchHHHHHHHHHHHHhc
Q psy17412 111 -----ED-----------NMKAHLYKARAMHSLGQREEAKEYVRQLVEK-YPTRRKLAIEQVRDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 111 -----~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 173 (240)
|. ...+|...+.+..+.|+.+.|...|.++++. .+..... +...|.+..+.+
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l-----------yi~~A~lE~~~~ 483 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI-----------YLENAYIEYHIS 483 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH-----------HHHHHHHHHTTT
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH-----------HHHHHHHHHHhC
Confidence 32 3457888888889999999999999999987 3333333 666666665554
Q ss_pred -ccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Q psy17412 174 -LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPT---RRKLVENYTQ 235 (240)
Q Consensus 174 -~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~ 235 (240)
+++.|...|+++++..|+++..|...+......|+.+.|...|++++...|+ ...+|..+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4788888888888888888888877888778888888888888888887763 3445544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=88.05 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=46.2
Q ss_pred chHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCc
Q psy17412 98 PVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP 177 (240)
Q Consensus 98 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (240)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++... +..+|.++...|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-----------WKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH-----------HHHHHHHHHHcCCHHH
Confidence 44555555555555555555555555555555555555555555555555444 5555555555555555
Q ss_pred hhhHHHHHhhcChh
Q psy17412 178 VLPDCDKALRLDED 191 (240)
Q Consensus 178 A~~~~~~~l~~~~~ 191 (240)
|+..|+++++..|.
T Consensus 72 A~~~~~~al~~~~~ 85 (115)
T 2kat_A 72 ARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 55555555555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=109.86 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=81.9
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCC---------------------------ChHHHHHHHHHHHHccCc
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRD---------------------------SPVLYTNRALTLLHLQLY 96 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------~~~~~~~la~~~~~~~~~ 96 (240)
++...+...+..+...|+|++|+.+++.+.+..++ +...|..+|..+...|+|
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTTCC----------------CT
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Confidence 34556677777777777777777777776654222 123556666666666666
Q ss_pred CchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 97 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
++|..+|.++ ..|..+|.++.++|++++|++.++++ +++.. |...+.++...|+++
T Consensus 139 eeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~-----------Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 139 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRT-----------WKEVCFACVDGKEFR 194 (449)
T ss_dssp TTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHH-----------HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchh-----------HHHHHHHHHHcCcHH
Confidence 6666666654 24566666666666666666666666 23333 666666666666666
Q ss_pred chhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 177 PVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 177 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
.|..+... +..+|++ ...++.+|.+.|++++|+.++++++.+++.+..++..++.++.+
T Consensus 195 lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 195 LAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 66555544 3345544 33577889999999999999999999999999999999887754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=82.47 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=81.2
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+..+..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q psy17412 123 AMHSLG 128 (240)
Q Consensus 123 ~~~~~~ 128 (240)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-12 Score=109.03 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=125.6
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHh----------------------cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQ----------------------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~----------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
.|.++...|.+++|..+|+++-.. ..+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 477777778888777777765211 1346889999999999999999999999886
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch---HH-----------HHHhc--cCchHHHHHHHHHHHHhc
Q psy17412 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRR---KL-----------AIEQV--RDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 110 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~-----------~~~~~--~~~~~~~~~la~~~~~~~ 173 (240)
+++..+..+|.++.+.|++++|+++|..+.+..++.. .. .+..+ ......+..+|..+...|
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 7788999999999999999999999999998775520 00 01111 123345678999999999
Q ss_pred ccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 174 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 174 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
+|++|..+|.++ ..|..++.++.++|++++|++.++++
T Consensus 1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999986 47999999999999999999999988
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=106.55 Aligned_cols=173 Identities=11% Similarity=-0.017 Sum_probs=142.1
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHccCcCchHHHHHHHHhcC------cc
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP------VLYTNRALTLLHLQLYDPVLPDCDKALRLD------ED 112 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~ 112 (240)
...++..+|..|...|++++|++++.+++...+... .+...++.++...|++++|+..+++++... +.
T Consensus 54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 345788999999999999999999999998766542 356678888888999999999999998654 33
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-
Q psy17412 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED- 191 (240)
Q Consensus 113 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~- 191 (240)
...++..+|.++...|++++|...+++++....... ..+....++..+|.++...|++++|...+++++...+.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-----DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-----CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-----cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 467899999999999999999999999987533211 11223567999999999999999999999999876432
Q ss_pred ------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 192 ------NMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 192 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
....+..+|.++...|++++|..+|.+++..
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 209 YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2456788899999999999999999999865
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=86.59 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy17412 64 AALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK 143 (240)
Q Consensus 64 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 143 (240)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++..+|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc
Q psy17412 144 YPTR 147 (240)
Q Consensus 144 ~~~~ 147 (240)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-14 Score=110.84 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=35.5
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
+.+..|..+|..+...|++++|++.|.++ .++..+..++.++...|++++|+.+++.+.+..++ +.+...++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 44579999999999999999999999774 45568889999999999999999999998875433 5666777778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHH
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 203 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 203 (240)
|.++|++.++.+.++. |+. .. +..+|..+...|+|++|..+|.++ ..|..+|.++
T Consensus 104 Y~Klg~l~e~e~f~~~-----pn~-~a-----------~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L 158 (449)
T 1b89_A 104 LAKTNRLAELEEFING-----PNN-AH-----------IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTL 158 (449)
T ss_dssp -----CHHHHTTTTTC-----C----------------------------CTTTHHHHHHHT--------TCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHcC-----CcH-HH-----------HHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHH
Confidence 8888888777766642 321 23 777777777777777777777755 3567777777
Q ss_pred HHcCCHHHHHHHHHHH
Q psy17412 204 HNLGQREEAKEYIREL 219 (240)
Q Consensus 204 ~~~g~~~~A~~~~~~~ 219 (240)
.++|++++|++.++++
T Consensus 159 ~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA 174 (449)
T ss_dssp HTTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc
Confidence 7777777777777776
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=81.41 Aligned_cols=81 Identities=25% Similarity=0.269 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
+.+++.+|.++...|++++|+..++++++..|++... +..+|.++...|++++|+..++++++.+|++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 3344444444444444444444444444444444333 44444444444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q psy17412 194 KAHLYKARAMHN 205 (240)
Q Consensus 194 ~~~~~la~~~~~ 205 (240)
.++..+|.++..
T Consensus 78 ~~~~~l~~~~~~ 89 (91)
T 1na3_A 78 EAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=103.52 Aligned_cols=134 Identities=14% Similarity=0.039 Sum_probs=113.5
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-----CC---ChHHHHHHHHHHHHccCcCchHHHHHHHHhcC--------
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQV-----RD---SPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-------- 110 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------- 110 (240)
......+..+..+|+|++|+.+++++++.. |+ ....+.++|.+|..+|+|++|+.++++++...
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344455666788999999999999999862 33 35688999999999999999999999998652
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK-----YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
|+....+.++|.+|..+|++++|+.++++++++ .|+++.. ..+..+++.++..++.+++|...|.++
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~--------~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT--------KDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555668999999999999999999999999974 6777766 666889999999999999999999888
Q ss_pred hhc
Q psy17412 186 LRL 188 (240)
Q Consensus 186 l~~ 188 (240)
.+.
T Consensus 462 ~~~ 464 (490)
T 3n71_A 462 REA 464 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=84.49 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=81.2
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLG 128 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 128 (240)
+..|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56889999999999999999999999999999 99999999999999999999999999999999887744 6
Q ss_pred CHHHHHHHHHHHHHcCCCch
Q psy17412 129 QREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 129 ~~~~A~~~~~~a~~~~~~~~ 148 (240)
.+.+++..|+++....|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 67788888888877777643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-11 Score=99.67 Aligned_cols=183 Identities=11% Similarity=-0.005 Sum_probs=156.4
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-----------CC-----------ChHHHHHHHHHHHHccCc
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQV-----------RD-----------SPVLYTNRALTLLHLQLY 96 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------~~-----------~~~~~~~la~~~~~~~~~ 96 (240)
....|.....|+..+......|++++|...|++++... |. ...+|...+....+.|+.
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 34556777788889999999999999999999999852 42 345788888888899999
Q ss_pred CchHHHHHHHHhc-CcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc
Q psy17412 97 DPVLPDCDKALRL-DEDNMKAHLYKARAMHSLGQ-REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL 174 (240)
Q Consensus 97 ~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 174 (240)
+.|...|.++++. .+....+|...|.+....++ ++.|...|+++++..|+++.. +...+......|+
T Consensus 451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~-----------w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEY-----------INKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHH-----------HHHHHHHHHhCCC
Confidence 9999999999987 44456778888888777755 899999999999999998777 8888888888999
Q ss_pred cCchhhHHHHHhhcCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 175 YDPVLPDCDKALRLDE---DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 175 ~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
.+.|...|++++...| ....+|..........|+.+.+....+++.+..|+++.+...
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999999999888 467888889999999999999999999999999998665433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=81.80 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=43.2
Q ss_pred cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 76 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..+++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 45556666666666666666666666666666666666666666666666666666666666666655443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-12 Score=100.87 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=111.7
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCchHHH
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRL--------DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEK-----YPTRRKLA 151 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~ 151 (240)
..+..+...|+|++|+..+++++.. .|.....+.++|.+|..+|+|++|+.++++++.+ .|+++..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~- 392 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL- 392 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH-
Confidence 3445567889999999999999865 2455678999999999999999999999999975 5777666
Q ss_pred HHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 152 IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 152 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
...+.++|.+|..+|++++|+..+++++++ +|........++.++..+|.+++|...|.++.+..
T Consensus 393 -------a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 -------GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777999999999999999999999999865 34456667889999999999999999999987654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=79.74 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=56.4
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 110 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
+|+++.+++.+|.++..+|++++|+..|+++++++|+++.. +..+|.++...|++++|+..+++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----------~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT-----------YYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 57777888888888888888888888888888888877766 8888888888888888888888888776
Q ss_pred hhh
Q psy17412 190 EDN 192 (240)
Q Consensus 190 ~~~ 192 (240)
|..
T Consensus 72 ~~~ 74 (100)
T 3ma5_A 72 REE 74 (100)
T ss_dssp HHH
T ss_pred hcC
Confidence 643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-13 Score=82.82 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH-HHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRK-LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 196 (240)
+.+|.++...|++++|+..++++++.+|++.. . +..+|.++...|++++|+..|+++++.+|++..++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEA-----------YYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHH-----------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 56788888889999999999999998888776 6 88899999999999999999999999999887776
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
.. +.+.+++..|+++...+|+++
T Consensus 73 ~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 73 AR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HH--------HHHHHHHHHHHHHhccCcccc
Confidence 44 567778888888777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-11 Score=89.65 Aligned_cols=47 Identities=9% Similarity=-0.001 Sum_probs=37.4
Q ss_pred HHHHHHHhHhHHHHhCC---HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQ---YEAALVQYDKAIEQVRDSPVLYTNRALTLL 91 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 91 (240)
.+-.++..|..++..++ ..+|+.+|+++++.+|+.+.++..++.+|.
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45555667777776554 578999999999999999999988888886
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=81.43 Aligned_cols=110 Identities=14% Similarity=0.030 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS----LGQREEAKE 135 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~ 135 (240)
+++++|+.+|+++.+.... .+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3566666666666665422 222 666666655666666666666654 445566666666665 566666666
Q ss_pred HHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH----hcccCchhhHHHHHhhc
Q psy17412 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRL 188 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~ 188 (240)
+|+++.+. .++.. .+++|.+|.. .+++++|+.+|+++.+.
T Consensus 83 ~~~~Aa~~--g~~~a-----------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGL--NDQDG-----------CLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHT--TCHHH-----------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHH-----------HHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 66666554 22333 5556666555 55555555555555554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=80.84 Aligned_cols=120 Identities=10% Similarity=-0.040 Sum_probs=102.8
Q ss_pred cCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH--
Q psy17412 94 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH-- 171 (240)
Q Consensus 94 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 171 (240)
+++++|+.+|+++.+..... +. +|.++...+..++|+.+|+++.+. .++.. .+++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a-----------~~~Lg~~y~~G~ 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNG-----------CRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHH-----------HHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHH-----------HHHHHHHHHcCC
Confidence 57889999999999886444 33 999999999999999999999987 44555 9999999998
Q ss_pred --hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 172 --LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 172 --~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
.+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+...++
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 89999999999999986 578999999999999 999999999999999874 555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-10 Score=86.03 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=109.4
Q ss_pred HHHHhcCCChHHH--HHHHHHHHHcc---CcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH----HHHHHHHHHHH
Q psy17412 71 KAIEQVRDSPVLY--TNRALTLLHLQ---LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR----EEAKEYVRQLV 141 (240)
Q Consensus 71 ~a~~~~~~~~~~~--~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----~~A~~~~~~a~ 141 (240)
++...-|.+..+| +..|..++..+ +..+|+.+|+++++++|+++.++..++.++.....+ ......+.+++
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 3445556665543 34566665543 458899999999999999999999888887532111 11112222222
Q ss_pred HcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 142 EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
... ..+...+.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|++.|.+++.
T Consensus 265 ~a~-----~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 265 DNI-----VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHH-----HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-----HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 110 001122334455999999998899999999999999999975 67889999999999999999999999999
Q ss_pred hCCCcHH
Q psy17412 222 KYPTRRK 228 (240)
Q Consensus 222 ~~p~~~~ 228 (240)
++|..+.
T Consensus 339 L~P~~~t 345 (372)
T 3ly7_A 339 LRPGANT 345 (372)
T ss_dssp HSCSHHH
T ss_pred cCCCcCh
Confidence 9998864
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.1e-10 Score=73.55 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc---ccCchhhHHHHHhhcC-h-hhHHHHHHHHHHHH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLD-E-DNMKAHLYKARAMH 204 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~-~-~~~~~~~~la~~~~ 204 (240)
...+.+.|.+.+..++.+.+. .+++|.++.+.+ +.++++..++.+++.+ | +..++++++|..++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~-----------~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKST-----------QFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 82 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHH-----------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHH-----------HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence 456777788888877777666 999999999987 7779999999999998 8 67999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 205 NLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
++|+|++|..+++++++..|++.++.....
T Consensus 83 kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999988766543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-09 Score=78.39 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=92.5
Q ss_pred hcCcccHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHcCCC--chHHHHHhccCchHHHHHHHHHHHHh--
Q psy17412 108 RLDEDNMKAHLYKARAMHS---L--G------QREEAKEYVRQLVEKYPT--RRKLAIEQVRDSPVLYTNRALTLLHL-- 172 (240)
Q Consensus 108 ~~~~~~~~~~~~la~~~~~---~--~------~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~-- 172 (240)
+.+|+++++++..|.+... . | ....|...++++++++|+ +... +..+|.+|...
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA-----------~~~LG~lY~~vPp 214 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAV-----------WNVLTKFYAAAPE 214 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHH-----------HHHHHHHHHHSCT
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHH-----------HHHHHHHHHhCCC
Confidence 5568888888888776543 2 2 357899999999999999 4445 99999999995
Q ss_pred ---cccCchhhHHHHHhhcChhh-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCc
Q psy17412 173 ---QLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHN-LGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 173 ---~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~ 226 (240)
|+.++|.++|+++++++|+. ..+++.+|..+.. .|++++|..++++++..+|..
T Consensus 215 ~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 215 SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999975 9999999999988 599999999999999988763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=69.17 Aligned_cols=72 Identities=21% Similarity=0.053 Sum_probs=64.9
Q ss_pred cCchHHHHHHHHHHHHhcc---cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 156 RDSPVLYTNRALTLLHLQL---YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 156 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
|.++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|++++|+.+|++++..+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3445569999999976655 78999999999999999999999999999999999999999999999999843
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-10 Score=68.09 Aligned_cols=72 Identities=21% Similarity=0.059 Sum_probs=59.7
Q ss_pred cCCChHHHHHHHHHHHHccC---cCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 76 VRDSPVLYTNRALTLLHLQL---YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888888888876655 6788888888888888888888888888888888888888888888888873
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-09 Score=85.53 Aligned_cols=117 Identities=9% Similarity=-0.069 Sum_probs=94.2
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHh-----cCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhcC--------c
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQ-----VRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRLD--------E 111 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~ 111 (240)
........+..+|+|++|+..++++++. .|++ ...+.++|.+|..+|+|++|+.++++++... |
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3344455567889999999999999976 2333 5688999999999999999999999998652 5
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCchHHHHHhccCchHHHHHHHHHHHHh
Q psy17412 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEK-----YPTRRKLAIEQVRDSPVLYTNRALTLLHL 172 (240)
Q Consensus 112 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 172 (240)
.....+.++|.+|..+|++++|+.++++++++ .|+++.. ..++.+++.+....
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~--------~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI--------EDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH--------HHHHHHHHHHHHHH
Confidence 55668999999999999999999999999874 6777666 45567777766544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-09 Score=70.60 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc---CcCchHHHHHHHHhcC-c-ccHHHHHHHHHHHHHcCCHHHHHH
Q psy17412 61 QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ---LYDPVLPDCDKALRLD-E-DNMKAHLYKARAMHSLGQREEAKE 135 (240)
Q Consensus 61 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~~ 135 (240)
....+.+.|.+.++.++.+..+.+++|+++.+.+ +.++++..++.+++.+ | ...+++|.+|..++++|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456677777777777888888888898888877 6668888888888887 7 567888999999999999999999
Q ss_pred HHHHHHHcCCCchHH
Q psy17412 136 YVRQLVEKYPTRRKL 150 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~ 150 (240)
++++++++.|++...
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999987766
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-09 Score=82.84 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=87.3
Q ss_pred HHcCCHHHHHHHHHHHHHc-----CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc--------Chh
Q psy17412 125 HSLGQREEAKEYVRQLVEK-----YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--------DED 191 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~ 191 (240)
...|+|++|+..+++++++ .|+++.. ...+.++|.+|..+|+|++|+.+++++++. +|+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~--------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYM--------LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHH--------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 3568899999999999984 6777666 677999999999999999999999999865 456
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHH
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEK-----YPTRRKLVENYT 234 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~ 234 (240)
....+.++|.+|..+|++++|...|++++.+ .|++|.+.....
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 6778999999999999999999999999975 588887665443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-09 Score=85.07 Aligned_cols=96 Identities=10% Similarity=0.040 Sum_probs=81.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHh-----cCCC---hHHHHHHHHHHHHccCcCchHHHHHHHHhc--------CcccHHHHH
Q psy17412 55 KAFQSGQYEAALVQYDKAIEQ-----VRDS---PVLYTNRALTLLHLQLYDPVLPDCDKALRL--------DEDNMKAHL 118 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 118 (240)
.....|+|++|+..++++++. .|++ ...+.++|.+|..+|+|++|+.++++++.. .|+....+.
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 334568999999999999986 3444 567889999999999999999999999965 355566899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCchHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEK-----YPTRRKL 150 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~ 150 (240)
++|.+|..+|++++|+.++++++++ .|+++..
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999999875 5666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=74.12 Aligned_cols=107 Identities=12% Similarity=-0.051 Sum_probs=90.2
Q ss_pred hcCCChHHHHHHHHHHHH-----ccC------cCchHHHHHHHHhcCcc--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q psy17412 75 QVRDSPVLYTNRALTLLH-----LQL------YDPVLPDCDKALRLDED--NMKAHLYKARAMHSL-----GQREEAKEY 136 (240)
Q Consensus 75 ~~~~~~~~~~~la~~~~~-----~~~------~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----~~~~~A~~~ 136 (240)
.+|+++..++..|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 467777777777766643 132 35788889999999999 566999999999995 999999999
Q ss_pred HHHHHHcCCCc-hHHHHHhccCchHHHHHHHHHHHHh-cccCchhhHHHHHhhcChhh
Q psy17412 137 VRQLVEKYPTR-RKLAIEQVRDSPVLYTNRALTLLHL-QLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 137 ~~~a~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~ 192 (240)
|+++++++|+. ... ++..|..+... |+++.|...+++++..+|..
T Consensus 227 ferAL~LnP~~~id~-----------~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDH-----------HITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHH-----------HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999974 777 99999999884 99999999999999998874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-09 Score=66.53 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=66.0
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQV-------RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.+...+.+|..++..|+|..|+..|+++++.. +..+.++..+|.++.++|+++.|+..+++++.+.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35667889999999999999999999999874 23467888999999999999999999999999999998887
Q ss_pred HHHH
Q psy17412 118 LYKA 121 (240)
Q Consensus 118 ~~la 121 (240)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-09 Score=65.73 Aligned_cols=76 Identities=17% Similarity=0.063 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLD-------EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
+...+.+|..++..|+|..|+.+|+.+++.. +....++..+|.++.++|++++|+.+++++++..|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4458899999999999999999999999863 346889999999999999999999999999999999998877
Q ss_pred HHH
Q psy17412 232 NYT 234 (240)
Q Consensus 232 ~l~ 234 (240)
++.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-08 Score=79.03 Aligned_cols=104 Identities=7% Similarity=-0.025 Sum_probs=87.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc-------
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEK-----YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL------- 188 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------- 188 (240)
..-+..+|++++|+..+++++++ .|+++.. ...+.++|.+|..+|+|++|+.++++++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~--------~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQ--------LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHH--------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 34466789999999999999975 4566655 677999999999999999999999999865
Q ss_pred -ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHH
Q psy17412 189 -DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEK-----YPTRRKLVEN 232 (240)
Q Consensus 189 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 232 (240)
+|.....+.++|.+|..+|++++|..++++++.+ .|++|.+...
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4556778999999999999999999999999964 5788766544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-07 Score=72.57 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=117.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh----------cC
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR----------LD 110 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------~~ 110 (240)
..|..+..|+..+......|+.++|...|++++.. |.+...|...+.. .+.++....+..... ..
T Consensus 208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH----TTCTHHHHHHHHHTC----------CH
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhhcc
Confidence 34666788888888888889999999999999998 8887666644433 111111111111110 01
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc-ccCchhhHHHHHhhcC
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLD 189 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~ 189 (240)
+....+|...+....+.+..+.|...|+++ + .|.. ...++...|.+....+ +.+.|...|+.+++..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~----------~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV----------GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC----------CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC----------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 223356777777777788899999999998 3 3321 1223666676666666 5889999999999988
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
|+.+..+...+......|+.+.|...|+++ +.+..+|..+.
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~ 391 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMI 391 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHH
Confidence 888888888888888899999998888876 23445554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-07 Score=71.50 Aligned_cols=190 Identities=9% Similarity=-0.028 Sum_probs=131.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC-cCchHHHHHHHHhc---CcccHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL-YDPVLPDCDKALRL---DEDNMKAHLY 119 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~~~~ 119 (240)
..++..+..+...+=.|+++.+..+|++++...| +...|..........++ .+.....|+.++.. +|.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3455556566666666899999999999999888 67788777766666653 46677788888864 5677788877
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHHcCCCchHHHHHhc-------------------------------------c-C
Q psy17412 120 KARAMH----SLGQREEAKEYVRQLVEKYPTRRKLAIEQV-------------------------------------R-D 157 (240)
Q Consensus 120 la~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-------------------------------------~-~ 157 (240)
....+. ..++.+.+...|++++..-+.+.......+ + .
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 776644 356788899999999985322211100000 0 0
Q ss_pred chHHHHHHHHHHHHhcc---------cCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 158 SPVLYTNRALTLLHLQL---------YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 158 ~~~~~~~la~~~~~~~~---------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
....|..... ...++ .+.....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+..
T Consensus 171 s~~~W~~y~~--~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLID--LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF 247 (493)
T ss_dssp SHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred cHHHHHHHHH--HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence 1112222222 22222 123567899999999999999999999999999999999999999999 99988
Q ss_pred HHHHHHHhh
Q psy17412 229 LVENYTQAF 237 (240)
Q Consensus 229 ~~~~l~~~~ 237 (240)
.+..++...
T Consensus 248 l~~~y~~~~ 256 (493)
T 2uy1_A 248 LSLYYGLVM 256 (493)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 888777653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-07 Score=58.09 Aligned_cols=122 Identities=14% Similarity=0.028 Sum_probs=97.2
Q ss_pred cCcccHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHH
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQR------EEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 182 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (240)
..|++++.|..........|+. ++-++.|++++..-|-.. -........+|...|.. ...++.++|...|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k---~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy 83 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK---YGQNESFARIQVRFAEL-KAIQEPDDARDYF 83 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG---GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc---cccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence 4688888888888888888888 888889999998777642 11222234556666654 5669999999999
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 183 DKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 183 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+.+++.+...+.+|...|.....+|+.+.|.+.+.+++.+.|...+......
T Consensus 84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 9999888889999999999999999999999999999999998776655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-07 Score=58.61 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCc---hhhHHHHHhhcC-h-hhHHHHHHHHHH
Q psy17412 128 GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDP---VLPDCDKALRLD-E-DNMKAHLYKARA 202 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~l~~~-~-~~~~~~~~la~~ 202 (240)
.....+...|.+....++..... .+++|+++.+..+... ++..++..++.+ | ..-+.++.+|..
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~-----------~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKST-----------QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHH-----------HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHH-----------HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 33456667777777766666666 9999999998876655 999999999987 6 578899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 203 MHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
++++|+|++|..+++.+++..|++.++....
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999998876543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-06 Score=67.00 Aligned_cols=161 Identities=12% Similarity=-0.006 Sum_probs=125.4
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHccC---------cCchHHHHHHHHhcC-cccHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVR-DSPVLYTNRALTLLHLQL---------YDPVLPDCDKALRLD-EDNMKAH 117 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~~ 117 (240)
+...-..+.+.|++++|+++|++..+..- -+...|..+-.++...+. .++|.+.|++..... +.+...|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44445677889999999999999887632 234556666666655443 456888888876543 2356788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc--ChhhH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKY--PTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNM 193 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~ 193 (240)
..+...+.+.|++++|...+++..+.. |+ ...|..+...+.+.|+.++|.+.+....+. .|+ .
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~ 175 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-E 175 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-H
Confidence 889999999999999999999987753 33 334888889999999999999999998765 344 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
..+..+...+.+.|+.++|.+.+++..+.
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 67888999999999999999999987654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-06 Score=55.16 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCc---hHHHHHHHHhcC-c-ccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDP---VLPDCDKALRLD-E-DNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
.....+.+.|.+....++.+..+.+++|+++....+... ++..++..+... | ..-++.+.+|..++++|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344556667777777777778888888888888776555 888888888776 5 45678888999999999999999
Q ss_pred HHHHHHHHcCCCchHH
Q psy17412 135 EYVRQLVEKYPTRRKL 150 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~ 150 (240)
.+++.+++..|++..+
T Consensus 95 ~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHH
Confidence 9999999999988766
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.57 E-value=7.2e-06 Score=53.20 Aligned_cols=122 Identities=17% Similarity=0.049 Sum_probs=98.5
Q ss_pred hchhHHHHHHHhHhHHHHhCCH------HHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 41 ARQDIADHFKANGNKAFQSGQY------EAALVQYDKAIEQVRDS--------PVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~------~~A~~~~~~a~~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
..|.+.+.|..........|+. ++-++.|++++..-|-. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4567788888888888888988 89999999999987643 3355556644 5679999999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhccc
Q psy17412 107 LRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY 175 (240)
Q Consensus 107 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 175 (240)
+++....+.+|...|....++|+...|.+.+.+++.+.|.... ....+...++.|..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~------------~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE------------MLEIALRNLNLQKK 143 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH------------HHHHHHHHHHTTCS
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH------------HHHHHHHhhhcCCC
Confidence 9888888999999999999999999999999999999998544 45566666666553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-06 Score=55.85 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=62.3
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHccCcCchHHHHHHHHhcC---------
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSP---------VLYTNRALTLLHLQLYDPVLPDCDKALRLD--------- 110 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------- 110 (240)
++.....++..|.|+.|+-....++....+++ .++..+|..++..++|.+|...|++++...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44455566667777777777666655533222 255667777777777777777777765321
Q ss_pred ----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 111 ----------------EDNMKAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 111 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
+...++.+.++.|+..++++.+|+..++.+
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 122368899999999999999999998754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-06 Score=57.18 Aligned_cols=138 Identities=11% Similarity=0.046 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN---------MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL 150 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 150 (240)
..+++.-....+..|.|+.|+-....++.+..++ ..++..+|..++..++|..|...|+++++....-...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666777788899999999988877664332 2478899999999999999999999998753321111
Q ss_pred HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy17412 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLV 230 (240)
Q Consensus 151 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 230 (240)
+.....++. ...+.. .... +.+.++.+.++.|+..+|++++|+..++.+-. ....+.+.
T Consensus 100 --------~s~~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvn 158 (167)
T 3ffl_A 100 --------SKVRPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKIN 158 (167)
T ss_dssp ------------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHH
T ss_pred --------CCccccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHH
Confidence 000111110 000000 1111 34567788888888888888888888765322 23456777
Q ss_pred HHHHHhhh
Q psy17412 231 ENYTQAFE 238 (240)
Q Consensus 231 ~~l~~~~~ 238 (240)
..+++++.
T Consensus 159 m~LakLy~ 166 (167)
T 3ffl_A 159 MLLANLYK 166 (167)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHhc
Confidence 77777764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=51.14 Aligned_cols=74 Identities=16% Similarity=0.071 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHhcc---cCchhhHHHHHhhcChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 159 PVLYTNRALTLLHLQL---YDPVLPDCDKALRLDED-NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
+...+++|+++.+..+ ..+++..++..++.+|. .-+.++.+|..+.++|+|++|..+.+.+++..|++.++...
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4558999999998754 45789999999998884 58899999999999999999999999999999999887554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-05 Score=50.00 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHhcc---cCchhhHHHHHhhcCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 159 PVLYTNRALTLLHLQL---YDPVLPDCDKALRLDE-DNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
+...+++|+++.+..+ ..+++..++..++..| ..-+.++.+|..++++|+|++|..+.+.+++..|++.++...
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4458999999998754 4578999999998888 467889999999999999999999999999999999887544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4e-05 Score=48.75 Aligned_cols=81 Identities=7% Similarity=-0.025 Sum_probs=66.4
Q ss_pred hhHHHHHHHhHhHHHHhCC---HHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 43 QDIADHFKANGNKAFQSGQ---YEAALVQYDKAIEQVRD-SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
...+.+.++.|.++.+..+ ..+++.+++..+...|. ..++++.+|..++++|+|++|..+.+.+++..|++..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3467888888988888765 45799999999988884 4778999999999999999999999999999999987765
Q ss_pred HHHHH
Q psy17412 119 YKARA 123 (240)
Q Consensus 119 ~la~~ 123 (240)
....+
T Consensus 117 Lk~~I 121 (134)
T 3o48_A 117 LKSMV 121 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00061 Score=54.49 Aligned_cols=143 Identities=10% Similarity=-0.028 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHccCcCchHHHHHHHHhcC-cccHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHcCCCchHHH
Q psy17412 82 LYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAHLYKARAMHSLG---------QREEAKEYVRQLVEKYPTRRKLA 151 (240)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~a~~~~~~~~~~~ 151 (240)
.+...-..+.+.|+.++|++.|++..+.. +.+...|..+-.++...+ ..++|...|++.....-.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~----- 102 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV----- 102 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC-----
Confidence 45556678889999999999999988653 224455555555554433 468899999887764321
Q ss_pred HHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcH
Q psy17412 152 IEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY--PTRR 227 (240)
Q Consensus 152 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 227 (240)
.+...|..+...+.+.|++++|.+.+++..+. .| +...|..+-..+.+.|+.++|.+.|++..+.. |+ .
T Consensus 103 -----Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~ 175 (501)
T 4g26_A 103 -----PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-E 175 (501)
T ss_dssp -----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-H
T ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-H
Confidence 12334889999999999999999999998765 34 46678888899999999999999999988653 43 3
Q ss_pred HHHHHHHHh
Q psy17412 228 KLVENYTQA 236 (240)
Q Consensus 228 ~~~~~l~~~ 236 (240)
..+..+...
T Consensus 176 ~ty~~Li~~ 184 (501)
T 4g26_A 176 PELAALLKV 184 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00028 Score=45.49 Aligned_cols=73 Identities=7% Similarity=-0.028 Sum_probs=37.5
Q ss_pred hHHHHHHHhHhHHHHhCC---HHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHH
Q psy17412 44 DIADHFKANGNKAFQSGQ---YEAALVQYDKAIEQVRD-SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 116 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 116 (240)
...++.++.|.++....+ ..+++.+++..+...|. ..++++.+|..++++|+|++|..+.+.+++..|++..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 345555555555555443 23455555555555442 23455555555555555555555555555555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00031 Score=58.47 Aligned_cols=125 Identities=13% Similarity=0.006 Sum_probs=90.2
Q ss_pred ccC-cCchHHHHHHHHhcCcccHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHc--------CCCchHHHHHhccCchH
Q psy17412 93 LQL-YDPVLPDCDKALRLDEDNMKAHLYKARAMH--S-LGQREEAKEYVRQLVEK--------YPTRRKLAIEQVRDSPV 160 (240)
Q Consensus 93 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~--~-~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~ 160 (240)
.++ ++.|+..+++....+|.... ++..+.+.. . ..+--+|+..+.+.++. .+.+... ....+....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~ 338 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS-ARLMNCMSD 338 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc-ccccCcchH
Confidence 445 57799999999998887643 222222221 2 23445677777777642 2333222 222333345
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
++..-+..+...|+|+-|+++.++++...|.....|..|+.+|..+|+++.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 67777888888999999999999999999999999999999999999999999877665
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0036 Score=48.13 Aligned_cols=172 Identities=10% Similarity=-0.024 Sum_probs=117.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHc-cCcCchHHHHHHHHhcCcccH----
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVL-----YTNRALTLLHL-QLYDPVLPDCDKALRLDEDNM---- 114 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~---- 114 (240)
.-.+.+.+|..|...|++++-.+++.......+.-+.+ ...+-..+... +..+.-++.+..+++...+.-
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999988776654443322 22333333322 223333445555554332221
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC-
Q psy17412 115 K--AHLYKARAMHSLGQREEAKEYVRQLVEKYPT--RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD- 189 (240)
Q Consensus 115 ~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~- 189 (240)
. .-..+|..|+..|+|.+|...+.+..+-... +.. ...+++.....+|...+++.++...+.++....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~-------~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKN-------LLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch-------hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 1 2337899999999999999999988874322 111 124567888889999999999999998886442
Q ss_pred -----hh-hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q psy17412 190 -----ED-NMKAHLYKARAMH-NLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 190 -----~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~ 223 (240)
|. .+.....-|..++ ..++|.+|..+|-+++...
T Consensus 171 ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 171 AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 22 2445667788888 8999999999998887554
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0057 Score=40.71 Aligned_cols=173 Identities=14% Similarity=0.032 Sum_probs=113.2
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHh--cC----------
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR--LD---------- 110 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~---------- 110 (240)
+..++.-..++..++-.|.|..++-.+.. -+.....+..+.||...++|..|+..+++.+. .+
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 33445566788899999999999876533 24566777789999999999999999999983 22
Q ss_pred -----cccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh----ccCch---------------HHHHHH
Q psy17412 111 -----EDNMK-AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQ----VRDSP---------------VLYTNR 165 (240)
Q Consensus 111 -----~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~---------------~~~~~l 165 (240)
|.+.+ .+..+|.++.+.|+.++|+.++.......|-.+....-. .|... ..+...
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~ 184 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDS 184 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhH
Confidence 33333 456689999999999999999999999888655441000 01000 000000
Q ss_pred HHHHHHhcccCchhhHHHHHhhcChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 166 ALTLLHLQLYDPVLPDCDKALRLDEDNMK-AHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 166 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
...+..... ...++-.+.-|.-.. .....+..++.+|-.++...+|..+-+.+|.
T Consensus 185 ~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 185 IEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 000000000 233344444455333 2345677899999999999999999999885
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0046 Score=51.63 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHh--------cCC----------ChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHH
Q psy17412 61 QYEAALVQYDKAIEQ--------VRD----------SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKAR 122 (240)
Q Consensus 61 ~~~~A~~~~~~a~~~--------~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 122 (240)
+--+|+..+.++++. .+. ....+..-+..+...|+++-|+++.++++...|.....|+.|+.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~ 379 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR 379 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 345677777777642 111 12345556777788999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy17412 123 AMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a 140 (240)
+|..+|+|+.|+-.++.+
T Consensus 380 vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 380 CHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHhcC
Confidence 999999999999888776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.01 Score=40.00 Aligned_cols=102 Identities=9% Similarity=-0.051 Sum_probs=71.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 55 KAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
.....|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-. +-.+..+|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 446789999999887654 5678899999999999999999999988743 233445566667765544
Q ss_pred HHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
...+.+.... + +.....+++.+|+++++++.|.+.
T Consensus 81 kla~iA~~~g-~---------------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE-D---------------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT-C---------------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc-c---------------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4444443322 2 444556777889999988888654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0044 Score=44.63 Aligned_cols=120 Identities=11% Similarity=0.021 Sum_probs=78.3
Q ss_pred HHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHH
Q psy17412 89 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALT 168 (240)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 168 (240)
..++.|+.++|++.....++.+|.+......+..+++-.|+|+.|...++.+.+++|..... ...|..+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~--------a~~yr~lI~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG--------ASQLRHLVKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH--------HHHHHHHHHH
Confidence 34566778888888888888888888888888888888888888888888888888874333 1111111111
Q ss_pred HHHhcccCchhhHHHHHhh--c------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 169 LLHLQLYDPVLPDCDKALR--L------DEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 169 ~~~~~~~~~A~~~~~~~l~--~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
-... ..++. . .|........-+......|+.++|...-.++++..|..
T Consensus 78 E~~R----------~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 AQAR----------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHH----------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHH----------HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1110 11111 1 12223334455666777899999999999998887754
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.019 Score=38.30 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=48.3
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 136 (240)
++-.+|+.++=+-.-. .|..+.....++.+.+..|.|..++-.+.+. +...+.+..+.|+...++|..|+..
T Consensus 13 ~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666664332222 2333455556777777788887776655432 4556677777888888888888888
Q ss_pred HHHHHH
Q psy17412 137 VRQLVE 142 (240)
Q Consensus 137 ~~~a~~ 142 (240)
++..++
T Consensus 85 le~il~ 90 (242)
T 3kae_A 85 LESILE 90 (242)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888873
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.014 Score=39.42 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=40.4
Q ss_pred HHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 89 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQL 140 (240)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 140 (240)
...+.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 346789999999887765 56788999999999999999999999875
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.014 Score=45.04 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=76.1
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----------------------hHHHHHHHHHHHHccCcCchHHHHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDS----------------------PVLYTNRALTLLHLQLYDPVLPDCDKA 106 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (240)
+...|......|+.+.|...+.+++...... ..+...++..+...|++.+++..+..+
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334445556789999999999999874221 113345667788899999999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 107 LRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVE 142 (240)
Q Consensus 107 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 142 (240)
+..+|-+..++..+-.++...|+..+|+..|+++.+
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988755
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.014 Score=45.02 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=75.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHH------H-----hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAI------E-----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
|......|+.+.|...+.+++.+.....-... . .......+...++..+...|++.+++..+..++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33344567888888888888887644321100 0 000112345567778888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
|-+..++..+..++...|+..+|+..|+++.+
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0083 Score=47.70 Aligned_cols=80 Identities=14% Similarity=-0.017 Sum_probs=69.7
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
..+..+|........++.|..+|.+|....|+++..+..+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999987776677777777766654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.003 Score=45.46 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=61.5
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
...+.|+.++|++.+...++.+|.+......+..+++-.|+++.|.+.++.+.+++|+....-..+..++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999999999999999998866555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.012 Score=49.77 Aligned_cols=75 Identities=12% Similarity=-0.180 Sum_probs=39.2
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 129 (240)
......+...|.++.|++..+ ++... .......|+++.|.+..+. .++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 334444555566666554432 11111 2233455666666555432 2345566666666666666
Q ss_pred HHHHHHHHHHH
Q psy17412 130 REEAKEYVRQL 140 (240)
Q Consensus 130 ~~~A~~~~~~a 140 (240)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666666654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0043 Score=49.30 Aligned_cols=78 Identities=10% Similarity=-0.112 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 161 LYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.++.++..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 467788888888888999999999999999999999999999999999999999999999887778888888887765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.1 Score=41.10 Aligned_cols=172 Identities=8% Similarity=-0.046 Sum_probs=108.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC--CC----hHHHHHHHHHHHHccCcCchHHHHHHHHh---cCccc--
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVR--DS----PVLYTNRALTLLHLQLYDPVLPDCDKALR---LDEDN-- 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~-- 113 (240)
.+.....++..+...|++.+|...+.......- .+ ..++.....++...+++.+|...+.++.. ..+..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 566778899999999999999999998764321 11 56778888999999999999999988742 12222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--chHHHHHhccCchHHHHHHHHHHHHhcccCc-hhhHHHHHhhc
Q psy17412 114 --MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT--RRKLAIEQVRDSPVLYTNRALTLLHLQLYDP-VLPDCDKALRL 188 (240)
Q Consensus 114 --~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~~l~~ 188 (240)
...+...|.++...++|.+|..+|..++..... ++.. .......+.++.-+..++. --..+.+....
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~--------~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAK--------WKPVLSHIVYFLVLSPYGNLQNDLIHKIQND 287 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHH--------HHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHH--------HHHHHHHHHHHHHhCCCCchHHHHHHHHhhc
Confidence 346677889999999999999999999874321 1111 0111222222222222222 12222222211
Q ss_pred C-hhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q psy17412 189 D-EDNMKAHLYKARAMHN--LGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 189 ~-~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p 224 (240)
. -.....+..+..++.. +.+++.....|...+..+|
T Consensus 288 ~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 288 NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 1 1235566677777665 4677887777776665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.039 Score=46.57 Aligned_cols=103 Identities=9% Similarity=-0.067 Sum_probs=71.7
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 133 (240)
......|+++.|.+..+. .++...|..+|..+.+.++++.|..+|.++-. +-.+..++...|+.+..
T Consensus 660 ~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHH
T ss_pred ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHH
Confidence 345778999999887533 36688999999999999999999999998732 22344555567777765
Q ss_pred HHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 134 KEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
....+.+... .. +.....++.+.|++++|++.|.+.
T Consensus 727 ~~~~~~a~~~-~~---------------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 727 VTLAKDAETT-GK---------------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHT-TC---------------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHc-Cc---------------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555444442 22 333334666778888888777654
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.014 Score=46.25 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=59.5
Q ss_pred HHHccCcCchHHHHHHHHh-----------cCcccHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHHcCCCch
Q psy17412 90 LLHLQLYDPVLPDCDKALR-----------LDEDNMKAHLYKARAMHSLGQREEAKE----------YVRQLVEKYPTRR 148 (240)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~----------~~~~a~~~~~~~~ 148 (240)
.+..+++++|.++....+. +++-.+.+|+..+.++...|+...... .+-.+++..--..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3456788888877765541 123446678888888887777665322 2222332211000
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC---h--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17412 149 KLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD---E--DNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223 (240)
Q Consensus 149 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 223 (240)
+ ....+.++..+-..|...+.|++|.....++.--. + .....++.+|+++...++|.+|.+++..+++..
T Consensus 226 D-----~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 226 D-----NETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp S-----SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred C-----cchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 0 00124568888899999999999999999984211 1 225677889999999999999999999999988
Q ss_pred CCc
Q psy17412 224 PTR 226 (240)
Q Consensus 224 p~~ 226 (240)
|.+
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 765
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0057 Score=47.89 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC-----h
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-----E 190 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~ 190 (240)
++..+|..+...|++++|.+.|.++.......... .+++.....++...+++..+...+.++-... |
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k--------id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~ 204 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK--------IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW 204 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence 44555666666666666666665555433222111 2335555555555566666655555553221 1
Q ss_pred h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 191 D-NMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 191 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
. ........|.++...++|.+|..+|-.++..
T Consensus 205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1 1223334455555566666666666555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.24 Score=43.96 Aligned_cols=122 Identities=14% Similarity=-0.018 Sum_probs=86.3
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-----------------------
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD----------------------- 110 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------- 110 (240)
..+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++..--
T Consensus 820 ~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 34555566655443 334556777777889999999999999999998874211
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHH
Q psy17412 111 EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA 185 (240)
Q Consensus 111 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (240)
...+..|.....++.+.|.++.+++..+.|++..+.+... .....|.++-......|+|++|...+...
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~------~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED------LSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH------HHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh------hHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 0122456677788889999999999999999876543321 01235777888889999999998877543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.013 Score=45.87 Aligned_cols=102 Identities=12% Similarity=-0.010 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--chHHHHHh
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLD---EDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT--RRKLAIEQ 154 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~ 154 (240)
..++..+|..|...|+++.|.+.|.++.... ..-.+.+.....++...+++..+...+.++...... ++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~---- 206 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER---- 206 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH----
Confidence 4578899999999999999999999987543 234678888889999999999999999998765322 2211
Q ss_pred ccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
...+....|..+...++|..|...|..++.-
T Consensus 207 ---~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 207 ---RNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp ---HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1233555677777889999999988877654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.12 Score=45.87 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=91.2
Q ss_pred HHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCch------HH--HHH-
Q psy17412 84 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY-PTRR------KL--AIE- 153 (240)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~------~~--~~~- 153 (240)
..+.......+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.-- .+.. .. ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345556667777766544 334456666677999999999999999999999874321 1110 00 000
Q ss_pred --hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-h----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17412 154 --QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-N----MKAHLYKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 154 --~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~----~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (240)
.....+..|..+..++.+.+.++.+++..+.+++..+. + ...|..+=..+..+|+|++|...+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 01123456888888999999999999999999876432 2 235777778899999999998877543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.2 Score=43.45 Aligned_cols=100 Identities=9% Similarity=-0.054 Sum_probs=79.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcC-cccHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQ----VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD-EDNMKAHL 118 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 118 (240)
.....+..+-..+.+.|+.++|.++|...... ..-+...|..+...|.+.|+.++|.+.|++..+.. ..+...|.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34456778888999999999999999775432 12346788899999999999999999999987654 23556777
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHc
Q psy17412 119 YKARAMHSLGQR-EEAKEYVRQLVEK 143 (240)
Q Consensus 119 ~la~~~~~~~~~-~~A~~~~~~a~~~ 143 (240)
.+-.++.+.|+. ++|...+++..+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 788888998984 7888999888764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.13 Score=44.64 Aligned_cols=96 Identities=5% Similarity=-0.202 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHccCcCchHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCchHHHHHh
Q psy17412 81 VLYTNRALTLLHLQLYDPVLPDCDKALRL----DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKY--PTRRKLAIEQ 154 (240)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~ 154 (240)
..+..+-..+.+.|+.++|...|....+. ...+...|..+...+.+.|+.++|...|++..+.. |+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-------- 199 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-------- 199 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc--------
Confidence 35778889999999999999999765432 23356788999999999999999999999997743 44
Q ss_pred ccCchHHHHHHHHHHHHhccc-CchhhHHHHHhhc
Q psy17412 155 VRDSPVLYTNRALTLLHLQLY-DPVLPDCDKALRL 188 (240)
Q Consensus 155 ~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~l~~ 188 (240)
...|..+..++.+.|+. ++|.+.+++..+.
T Consensus 200 ----vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 200 ----LLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp ----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 33478888889998885 6788899888764
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.1 Score=41.54 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=53.9
Q ss_pred HHHHhCCHHHHHHHHHHHHH--h---------cCCChHHHHHHHHHHHHccCcCchHH----------HHHHHH-----h
Q psy17412 55 KAFQSGQYEAALVQYDKAIE--Q---------VRDSPVLYTNRALTLLHLQLYDPVLP----------DCDKAL-----R 108 (240)
Q Consensus 55 ~~~~~~~~~~A~~~~~~a~~--~---------~~~~~~~~~~la~~~~~~~~~~~A~~----------~~~~~~-----~ 108 (240)
.++..+++++|.++-...+. . ++-.+.+|+..+.++...|+...... .+-.++ .
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34567788888777665541 1 22235677777777777776654321 111121 1
Q ss_pred cCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhh
Q psy17412 109 LDE-DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 187 (240)
Q Consensus 109 ~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 187 (240)
.++ .....+..+-..|...+.++.|.....++. .|.... ...+....++.+|.++.-.++|.+|.+++..++.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~----sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDV----SSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccC----CHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222 234566677788888888888888888874 443210 0011245577888888888999889888888888
Q ss_pred cChh
Q psy17412 188 LDED 191 (240)
Q Consensus 188 ~~~~ 191 (240)
..|.
T Consensus 299 kap~ 302 (523)
T 4b4t_S 299 KAPH 302 (523)
T ss_dssp SCSC
T ss_pred hCCc
Confidence 7664
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.68 Score=35.68 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=75.2
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCC--C----hHHHHHHHHHHHHccCcCchHHHHHHHHhcC------cc-cHHH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRD--S----PVLYTNRALTLLHLQLYDPVLPDCDKALRLD------ED-NMKA 116 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~-~~~~ 116 (240)
..+|..|+..|+|.+|.+.+.+....-.. + .+++..-..+|...+++.++...+.++.... |. ....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47899999999999999999998875322 1 4567777888999999999999998886432 11 1335
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCC
Q psy17412 117 HLYKARAMH-SLGQREEAKEYVRQLVEKYP 145 (240)
Q Consensus 117 ~~~la~~~~-~~~~~~~A~~~~~~a~~~~~ 145 (240)
...-|..+. ..++|.+|...|-++++...
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 566788888 89999999999999876443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.92 Score=35.67 Aligned_cols=172 Identities=9% Similarity=0.019 Sum_probs=109.4
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHH---HHHH-ccCcCchHHHHHHHHhcC--------
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRAL---TLLH-LQLYDPVLPDCDKALRLD-------- 110 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~---~~~~-~~~~~~A~~~~~~~~~~~-------- 110 (240)
+.....+..+...+...|+|+...+.+.-..........+-..+.. -+.. ....+ .+.....+..-
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d--~~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLD--LNTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTH--HHHHHHHHHCCSSSSSCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHhccch
Confidence 3356677788888999999998877775544433222222222211 1111 11111 11112222111
Q ss_pred ---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 111 ---EDNMKAHLYKARAMHSLGQREEAKEYVRQLVE-KYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 111 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
-........++.++...|++.+|...+..... ........ ....++.....++...+++.+|...++++.
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~------~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS------EKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 12345678899999999999999999988753 22211111 124568888899999999999999998874
Q ss_pred h----cC--hh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17412 187 R----LD--ED-NMKAHLYKARAMHNLGQREEAKEYIRELVEK 222 (240)
Q Consensus 187 ~----~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 222 (240)
. .. |. ....+...|.++...++|.+|..+|..++..
T Consensus 205 ~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 205 KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2 11 11 2456678899999999999999999998864
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=1.3 Score=36.47 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=75.0
Q ss_pred HHHHHHccCcCchHHHHHHHHhcCccc-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHH
Q psy17412 87 ALTLLHLQLYDPVLPDCDKALRLDEDN-MK---AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162 (240)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
+.-.....+.+.|...+.+.....+-+ .. .+..++.-....+...++...+.+......++.. .
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 288 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL------------I 288 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH------------H
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH------------H
Confidence 333344456666766666554322111 11 2222333333334345666666665543333221 2
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVE 221 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 221 (240)
..++...++.|+++.|..++.+.-...+......+.+|+++..+|+.++|..+|+++..
T Consensus 289 e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 289 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 23333445679999999999876654455688899999999999999999999999875
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.27 E-value=1.9 Score=32.07 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHh----------------h---cChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKAL----------------R---LDEDNMKAHLYKAR-AMHNLGQREEAKEYIREL 219 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l----------------~---~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~ 219 (240)
.++..+|..+.+.|++.+|..+|-..- + -.|...+.+...+. .|..+|+...|...+...
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 335666666666666555555442110 1 24555666655555 367889999999988876
Q ss_pred HHh
Q psy17412 220 VEK 222 (240)
Q Consensus 220 ~~~ 222 (240)
.+.
T Consensus 215 ~~~ 217 (312)
T 2wpv_A 215 LER 217 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=4 Score=33.62 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=98.0
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q psy17412 56 AFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKE 135 (240)
Q Consensus 56 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 135 (240)
....+...++...+.+......++. ..-.++...+..|+++.|...|...-..........+.+|..+..+|+.++|..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~ 340 (618)
T 1qsa_A 262 LMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE 340 (618)
T ss_dssp SCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence 3344435566777777655443333 233344445677999999999988766445567889999999999999999999
Q ss_pred HHHHHHHcCCCchHH-HHHhc---------c--C--c----hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 136 YVRQLVEKYPTRRKL-AIEQV---------R--D--S----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~-~~~~~---------~--~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
.|+++..- .+.... +.... + . . ...-...+..+...|....|...+...+...+ ..-..
T Consensus 341 ~~~~~a~~-~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~ 417 (618)
T 1qsa_A 341 ILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQA 417 (618)
T ss_dssp HHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHH
T ss_pred HHHHHhcC-CChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHH
Confidence 99998753 221111 00000 0 0 0 01234456667777888888777776665322 23345
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYI 216 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~ 216 (240)
.++.+....|.++.++...
T Consensus 418 ~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 418 QLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHH
Confidence 6667777777777766544
|
| >3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A | Back alignment and structure |
|---|
Probab=91.38 E-value=1.1 Score=25.19 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
..+|..+...|++++|..+|-+++...|.-.+....+.+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~t 60 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQT 60 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5678888888888888888888888888776666555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.34 E-value=0.00078 Score=52.83 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=88.7
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQ 129 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 129 (240)
...|.-++..|.|+.|.-+|.. ..-|..++.++..+|+|..|.+..+++ +++..|......+...+.
T Consensus 148 q~VGDrcf~e~lYeAAKilys~--------isN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGG--------SCCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCT
T ss_pred HHHHHHHHHccCHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchH
Confidence 3355555555555555444422 223445667777777777777766665 445567777777777777
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCH
Q psy17412 130 REEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209 (240)
Q Consensus 130 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 209 (240)
+.-|--+--..+-.... +-.+...|...|.+++-+..++.++.+...+......+|.+|.+- ++
T Consensus 215 frLAqicGLniIvhade---------------L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 215 FRLAQMCGLHIVVHADE---------------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp TTTTTHHHHHHHCCSSC---------------CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHHhcchhcccHHH---------------HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 77766665554433222 444455677788999999999999988888888888888777653 34
Q ss_pred HHHHHHH
Q psy17412 210 EEAKEYI 216 (240)
Q Consensus 210 ~~A~~~~ 216 (240)
++-.+++
T Consensus 279 eKlmEHl 285 (624)
T 3lvg_A 279 QKMREHL 285 (624)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=90.08 E-value=5 Score=34.99 Aligned_cols=91 Identities=15% Similarity=0.013 Sum_probs=66.6
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhc-Cc-------------------
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL-DE------------------- 111 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~------------------- 111 (240)
+...+...|.++-+.+ .+..-|.++..-+.+|.++...|++++|..+|+++-.- ..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4455666777765433 44666777777789999999999999999999987521 00
Q ss_pred ---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 112 ---DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 112 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
.....|.....++...+-++-++...+.|+.....
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~ 929 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET 929 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCS
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Confidence 01235677788888999999999999999986543
|
| >3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.95 E-value=4.4 Score=31.92 Aligned_cols=99 Identities=9% Similarity=-0.080 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHhc-----cCchHHHHHHHHHHHHhcccCchhhHHHHHhhc--------Ch--hh
Q psy17412 128 GQREEAKEYVRQLVEKYPTRRKLAIEQV-----RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL--------DE--DN 192 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~--~~ 192 (240)
...+++...+.++....-++........ .....+...+-.+|++.++..-|...++..-.. .| ..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3567777888888876443322101000 011223455668899999999998888654322 22 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEK-YPTR 226 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~ 226 (240)
+...+.+|+++...+++.+|.+++..|++. .|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 667899999999999999999999999998 6654
|
| >3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A | Back alignment and structure |
|---|
Probab=86.82 E-value=2.6 Score=23.64 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVL 82 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 82 (240)
..+|..+...|++++|...|-+|+...|.-...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 457888899999999999999999998876544
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=86.65 E-value=5.1 Score=34.91 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=39.1
Q ss_pred HHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 86 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV 141 (240)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 141 (240)
+.......|.++-| ...+...|.++-.-+.+|.++...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44455556655533 34556667777778999999999999999999999875
|
| >1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1 | Back alignment and structure |
|---|
Probab=86.32 E-value=1.9 Score=25.60 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
..+|..+...|+++.|+.+|-+++...|.-.+....+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455555666666666666666666655544444333
|
| >3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.12 E-value=3.7 Score=28.34 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=42.3
Q ss_pred hhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHccCcCc
Q psy17412 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPV-----LYTNRALTLLHLQLYDP 98 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~la~~~~~~~~~~~ 98 (240)
.+.....+.+|..++..++|.+|.+.+..|+...|.... ++..+.-+.+-+|+...
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 346778899999999999999999999999999886643 23334444456777644
|
| >3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.19 E-value=3.1 Score=32.79 Aligned_cols=88 Identities=5% Similarity=-0.067 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHhcC-----C--Ch---------HHHHHHHHHHHHccCcCchHHHHHHHHhcC--------c--cc
Q psy17412 60 GQYEAALVQYDKAIEQVR-----D--SP---------VLYTNRALTLLHLQLYDPVLPDCDKALRLD--------E--DN 113 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~-----~--~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~--~~ 113 (240)
...+++...+.++....- + .. .....+-.+|++.|+...+...++..-... | ..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 346777788888877621 1 10 123345578999999999988886543222 2 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEK-YPTR 147 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~ 147 (240)
....|.+|..+...++|.+|..++..|++. .|..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 457889999999999999999999999998 7754
|
| >2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B* | Back alignment and structure |
|---|
Probab=83.25 E-value=3.1 Score=24.01 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=21.4
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+..+...|...-..|+|++|+.+|..+++.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444556666677778888888887777654
|
| >2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1 | Back alignment and structure |
|---|
Probab=82.51 E-value=8.4 Score=25.46 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=37.3
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC--------hHHH-HHHHHHHHHccCcCchHHHHHHHHh
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDS--------PVLY-TNRALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~-~~la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
-+..|..++..|+|=+|-+.++.+-...+.. ..+. ...|..+.+.|+...|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556677777788888888888877665433 1122 2333445556666667666666654
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=82.17 E-value=4 Score=23.97 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=23.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+-..+..+...|+|++||++.+++...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445556788888999999999888877543
|
| >1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1 | Back alignment and structure |
|---|
Probab=80.58 E-value=4.1 Score=24.19 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPV 81 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 81 (240)
..+|..+...|+++.|+.+|-+|+...|.-..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45788888999999999999999998877543
|
| >3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.57 E-value=6.3 Score=27.19 Aligned_cols=53 Identities=8% Similarity=-0.101 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH-----HHHHHHHHHHHHcCCHHH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM-----KAHLYKARAMHNLGQREE 211 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~g~~~~ 211 (240)
....+.+|.+++..++|.+|.+.+..|++..|... .++..+.-+-+-+|+...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 56778889999989999999999999988877542 234444445566777543
|
| >4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.40 E-value=4.6 Score=23.48 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=21.7
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
+..+...|...-..|+|++|+.+|..+++.
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444556666777788888888888887764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 240 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-16 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-11 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-12 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 9e-08 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.001 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.001 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-07 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 1e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-06 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.002 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 4e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 8e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.3 bits (181), Expect = 4e-16
Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 11/200 (5%)
Query: 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPV 99
+ D + GN ++ ++ A+ Y +A+ + V++ N A L D
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256
Query: 100 LPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
+ +A+ L A+ A A+ G EA++ + PT
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS--------- 307
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
N A + + KAL + + AH A + G+ +EA + +E
Sbjct: 308 --LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
Query: 220 VEKYPTRRKLVENYTQAFEQ 239
+ PT N ++
Sbjct: 366 IRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.5 bits (166), Expect = 4e-14
Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 11/171 (6%)
Query: 37 EERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLY 96
+ A ++ G + A+ Y +AIE P Y N A L
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR 156
+ ALRL + + A G EEA R+ +E +P
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP----------- 336
Query: 157 DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
+ ++N A L L +A+R+ A+ + +
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (141), Expect = 8e-11
Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 11/219 (5%)
Query: 21 MNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP 80
+E + D+ GN G+ E A Y KAIE +
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169
Query: 81 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQL 140
V ++N + +KA+ LD + + A++ + + A +
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 141 VEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200
+ P V++ N A L D + +A+ L A+ A
Sbjct: 230 LSLSPNH-----------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 201 RAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
A+ G EA++ + PT + N +
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 2e-08
Identities = 23/195 (11%), Positives = 51/195 (26%), Gaps = 23/195 (11%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
++ +Q+G +EAA + Q D+ + + + D A++ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 113 NMKAHLYKARA-----------------------MHSLGQREEAKEYVRQLVEKYPTRRK 149
+A+ A +E
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 150 LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209
A++ D + ++ L L + KA+ + A + G+
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 210 EEAKEYIRELVEKYP 224
A + + V P
Sbjct: 186 WLAIHHFEKAVTLDP 200
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 7e-05
Identities = 32/227 (14%), Positives = 66/227 (29%), Gaps = 26/227 (11%)
Query: 39 RKARQDIADHFKANGNKA---FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL 95
+ + D+ + FQ + + + AI+Q Y+N
Sbjct: 23 MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82
Query: 96 YDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT--------- 146
+ ALRL D + ++ A A+ + G E A + ++ P
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142
Query: 147 --------------RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192
AIE + V ++N + +KA+ LD +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
Query: 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239
+ A++ + + A + P + N + +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.003
Identities = 8/76 (10%), Positives = 24/76 (31%)
Query: 164 NRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKY 223
A ++ C + R + DN L + + + + + +++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 224 PTRRKLVENYTQAFEQ 239
P + N +++
Sbjct: 64 PLLAEAYSNLGNVYKE 79
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.5 bits (148), Expect = 2e-12
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 21/201 (10%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN+ F +Y A Y +AI + V YTNRAL L +Q + L DC +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP------------------TR 147
AL LD ++KAH + + + +EA +++ +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 148 RKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207
R +IE+ R + LT L + L +C + ED+ +A
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH- 182
Query: 208 QREEAKEYIRELVEKYPTRRK 228
++ + EL + +RK
Sbjct: 183 --DKYMADMDELFSQVDEKRK 201
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (145), Expect = 6e-12
Identities = 17/185 (9%), Positives = 53/185 (28%), Gaps = 10/185 (5%)
Query: 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 112
G A ++ AL + + + N L+ +++ D+
Sbjct: 12 GVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 68
Query: 113 NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP-----TRRKLAIEQVRDSPVLYTNRAL 167
A+ + + + + A + +++ + + + L ++ + + N A
Sbjct: 69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 128
Query: 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227
+ + A + + + + KA + E + +
Sbjct: 129 MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL--FRPNE 186
Query: 228 KLVEN 232
+ V
Sbjct: 187 RQVAQ 191
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.4 bits (120), Expect = 4e-08
Identities = 18/169 (10%), Positives = 48/169 (28%), Gaps = 12/169 (7%)
Query: 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDE 111
A GQ + AL +AI+ L ++ L ++ ++++L
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 112 DNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH 171
+ + + + R++ + + + +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQG----------AATAKVLGENEELTKSLVSFNLSMV 111
Query: 172 LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELV 220
Q Y+ V + L ++ L + ++ ++ EL
Sbjct: 112 SQDYEQVSELALQIEELRQEK--GFLANDTSFSDVRDIDDRLGGYIELF 158
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.1 bits (88), Expect = 5e-04
Identities = 7/65 (10%), Positives = 18/65 (27%)
Query: 175 YDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234
L +A++ + + G E A E + + ++ +P
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71
Query: 235 QAFEQ 239
+
Sbjct: 72 HLVKA 76
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 9e-08
Identities = 27/213 (12%), Positives = 59/213 (27%), Gaps = 16/213 (7%)
Query: 16 FFLFLMNDFMRSVEIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75
+ L + + + E++ RF E ++ A + L D I +
Sbjct: 115 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173
Query: 76 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKE 135
+ + R+ L L D RL E+ + L + +++
Sbjct: 174 NFSNYSSWHYRSCLLPQLHPQP----DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229
Query: 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195
+ + + + LQ + + ++ +
Sbjct: 230 FYHRWLLGRA-----------EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 278
Query: 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228
+ RA+ L +E +Y L P R
Sbjct: 279 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.9 bits (84), Expect = 0.001
Identities = 31/219 (14%), Positives = 62/219 (28%), Gaps = 22/219 (10%)
Query: 29 EIDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRAL 88
E +R E + + +A K E+ L + + D L+ R
Sbjct: 12 EQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRRE 71
Query: 89 TLLHL----------QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQR--EEAKEY 136
L HL L L + LR++ + ++ + L + E
Sbjct: 72 VLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL 131
Query: 137 VRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 196
+ +E R+ R + L D + + N +
Sbjct: 132 CARFLEADE----------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181
Query: 197 LYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQ 235
Y++ + L + ++ R +LV+N
Sbjct: 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-07
Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 5/180 (2%)
Query: 35 RFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ 94
+FEE +D F+ G + Q G A++ ++ A++Q + T +
Sbjct: 9 QFEEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67
Query: 95 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK----L 150
+ + L L DN A + A + + + +A E +R + P
Sbjct: 68 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 127
Query: 151 AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQRE 210
+LL L+ V A+RLD ++ + + E
Sbjct: 128 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 187
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 1e-04
Identities = 26/157 (16%), Positives = 51/157 (32%)
Query: 30 IDAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALT 89
+ D G SG+Y+ A+ + A+ + +L+ T
Sbjct: 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 215
Query: 90 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRK 149
L + + + +AL L +++ + +LG EA E+ + + R
Sbjct: 216 LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275
Query: 150 LAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186
E S +++ L L L D + L
Sbjct: 276 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.001
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 15/140 (10%)
Query: 104 DKALRLDEDN----MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159
DK + +E+N + G A V++ P
Sbjct: 5 DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----------KHM 53
Query: 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL 219
+ T + + + L L DN A + A + N + +A E +R+
Sbjct: 54 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 113
Query: 220 VEKYPTRRKLVENYTQAFEQ 239
+ P LV +
Sbjct: 114 LRYTPAYAHLVTPAEEGAGG 133
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 6e-07
Identities = 29/100 (29%), Positives = 49/100 (49%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A+ K N F++ YE A+ Y +AIE + + Y NR+L L + Y L D +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
A+ LD+ +K + +A + +LG+ A +V+ P
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 109
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 45.1 bits (105), Expect = 1e-06
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 24/172 (13%)
Query: 40 KARQDIAD--HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYD 97
K +++ ++ + +G+Y+ A +A+E P
Sbjct: 1 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMP----------------- 43
Query: 98 PVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRD 157
++A + H A A+ L +EA + + + R +L ++ +
Sbjct: 44 -----PEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98
Query: 158 SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQR 209
+RAL L L +P+ K + + E+ K R M R
Sbjct: 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR 150
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 5e-06
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 105
A K GN A++ ++ AL YDKA E + TN+A Y+ C+K
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 106 ALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNR 165
A+ + +N + + A+A +G +E + + Y ++ + R VL +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY----NKSLAEHRTPDVLKKCQ 119
Query: 166 AL 167
Sbjct: 120 QA 121
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 1e-05
Identities = 30/103 (29%), Positives = 45/103 (43%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
+ + K GNKA G + AL Y +AI+ + VLY+NR+ Y D
Sbjct: 1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146
K + L D K + KA A+ L + EEAK + ++
Sbjct: 61 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 103
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 5e-05
Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQ-LYDPVLPDCDKALRLDEDNMKAHL 118
+ E A AIE + ++ R + L LQ + + N +
Sbjct: 57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 116
Query: 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178
++ + L + E++ ++ + + + +R + +L+D
Sbjct: 117 HRRVLVEWLRDPSQELEFIADILNQDA-----------KNYHAWQHRQWVIQEFKLWDNE 165
Query: 179 LPDCDKALRLDEDNMKAHLYKARAMHNLGQ 208
L D+ L+ D N + + N
Sbjct: 166 LQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 31/186 (16%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+ + A K G F+ G+Y A++QY K + + L
Sbjct: 11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL------------------- 51
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
++ + + A L A + K A+ +
Sbjct: 52 SEKESKASESFLLAAFLNLAMCY-----------LKLREYTKAVECCDKALGLDSANEKG 100
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA-KEYIRELV 220
R L + ++ D +K L ++ N A L + E + +
Sbjct: 101 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160
Query: 221 EKYPTR 226
+K+ +
Sbjct: 161 KKFAEQ 166
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 37.7 bits (86), Expect = 4e-04
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP----------------VLYTN 85
+ A K GN+ F+ + A+V+Y +A++ + N
Sbjct: 13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 72
Query: 86 RALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYP 145
A + Y + K L++D++N+KA A G EEAKE + + P
Sbjct: 73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 4e-04
Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 30/223 (13%)
Query: 32 AMRRFEERKARQDIADHFKAN-----GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNR 86
+ R E+ A + + D +A G G A + +A+ D P ++
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 77
Query: 87 ALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLV----- 141
+ L +D D L LD AHL + A++ G+ + A++ +
Sbjct: 78 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 137
Query: 142 --------------------EKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPD 181
++ + ++ + + + L + + D
Sbjct: 138 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD 197
Query: 182 CDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224
L E + + Y + +LG + A + V
Sbjct: 198 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (82), Expect = 0.002
Identities = 29/190 (15%), Positives = 53/190 (27%), Gaps = 25/190 (13%)
Query: 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDC 103
D+ + F G Q+G ++AA +D +E + NR + L + D
Sbjct: 69 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128
Query: 104 DKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVR------------------------- 138
+ D ++ L+ A L +++ + +
Sbjct: 129 LAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 188
Query: 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198
L+E+ L L D A+ + N H Y
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248
Query: 199 KARAMHNLGQ 208
+ LGQ
Sbjct: 249 ALLELSLLGQ 258
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (86), Expect = 4e-04
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 31 DAMRRFEERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVR------------- 77
DA ++ I++ K GN F+S +E A+ +Y K + V
Sbjct: 12 DADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 71
Query: 78 ---DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAK 134
+ N L + + + C +AL +D N KA +A+ L + ++A
Sbjct: 72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 131
Query: 135 EYVRQLVEKYP 145
+++ E P
Sbjct: 132 ADLKKAQEIAP 142
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 8e-04
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 31/182 (17%)
Query: 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLP 101
+ + + K G F+ G+Y+ AL+QY K L
Sbjct: 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKI-------------------VSWLEYESSF 49
Query: 102 DCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVL 161
++A + + +HL A Q A+E ++
Sbjct: 50 SNEEAQKAQALRLASHLNLAMCHL-----------KLQAFSAAIESCNKALELDSNNEKG 98
Query: 162 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG-QREEAKEYIRELV 220
+ R L + ++ D K L+L +N A A + Q K+ +
Sbjct: 99 LSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 158
Query: 221 EK 222
E+
Sbjct: 159 ER 160
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.3 bits (80), Expect = 0.004
Identities = 21/218 (9%), Positives = 49/218 (22%), Gaps = 20/218 (9%)
Query: 43 QDIADHFKANGNKAFQSGQYEAALVQYDKAIE------QVRDSPVLYTNRALTLLHLQLY 96
++ AD + A + KA + ++ Y
Sbjct: 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93
Query: 97 DPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL--AIEQ 154
+ + A+++ + E + ++ Y + +
Sbjct: 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153
Query: 155 VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN-------MKAHLYKARAMHNLG 207
V S + A Y K ++ N L K
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213
Query: 208 QREEAKEYIRELVEKYPT-----RRKLVENYTQAFEQE 240
A ++E + P +++ A +
Sbjct: 214 DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.87 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.86 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.82 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.82 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.8 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.79 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.79 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.78 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.77 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.76 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.75 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.75 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.74 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.74 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.72 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.71 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.71 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.49 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.29 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.14 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.63 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.59 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.98 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.58 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.33 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 93.08 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 89.27 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 86.12 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 85.87 | |
| d2cfua2 | 505 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 85.51 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 85.18 | |
| d1om2a_ | 95 | Mitochondrial import receptor subunit Tom20 {Rat ( | 84.53 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 80.62 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.2e-28 Score=186.90 Aligned_cols=190 Identities=19% Similarity=0.168 Sum_probs=155.2
Q ss_pred HHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHH
Q psy17412 39 RKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 118 (240)
Q Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 118 (240)
....|..+.++..+|.++...|++++|+..++++....|.....+..+|.++...|++++|+..|+++++.+|+++.++.
T Consensus 196 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T d1w3ba_ 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34456666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 198 (240)
.+|.++...|++++|+..+++++...|.+... +..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 276 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T d1w3ba_ 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADS-----------LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhccCCccchh-----------hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 77777777777777777777777777766555 9999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 199 KARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
+|.++..+|++++|+.+|+++++++|+++.++..++.++.+
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5e-28 Score=181.58 Aligned_cols=192 Identities=17% Similarity=0.116 Sum_probs=172.9
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
...+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++++|++...+..+|.++..
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 99 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHH--------------------------------------HHHhcc--CchHHHHHHH
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKL--------------------------------------AIEQVR--DSPVLYTNRA 166 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~--------------------------------------~~~~~~--~~~~~~~~la 166 (240)
+|++++|+..+++++...|..... ++...| ..+.++..+|
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 999999999999999998875432 122222 2457788999
Q ss_pred HHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 167 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.++...|++++|+..+++++..+|+++.++..+|.++..+|++++|+.+|+++++.+|+++.++..++.++.
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.3e-28 Score=179.92 Aligned_cols=186 Identities=14% Similarity=0.149 Sum_probs=161.3
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC-cCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL-YDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.|+-.+++..+|.++.+.+.+++|++.++++++++|++..+|.++|.++..+|. +++|+..++++++.+|++..+|..+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~ 118 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 118 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 455677788888888888889999999999999999999999999988888774 7889999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHH
Q psy17412 121 ARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 200 (240)
Q Consensus 121 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 200 (240)
|.++..+|++++|+..++++++++|++... |.++|.++...|++++|+..++++++++|.+..+|.++|
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a-----------~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~ 187 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHA-----------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY 187 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhcchHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 999999999999999999999999888777 889999999999999999999999999998888999888
Q ss_pred HHHHHcCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 201 RAMHNLGQ------REEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 201 ~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.++...|. +++|+..+.++++.+|+++.+|..++.++.
T Consensus 188 ~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~ 231 (315)
T d2h6fa1 188 FVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 231 (315)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 88887776 578888899999999998888888877664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.9e-27 Score=176.67 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=165.3
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc-----
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED----- 112 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----- 112 (240)
....+|..+.+|..+|.++...|++++|+..|.++++.+|++...+..+|.++...|++++|+..+++++...|.
T Consensus 45 al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 124 (323)
T d1fcha_ 45 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 124 (323)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHH
Confidence 466789999999999999999999999999999999999999999999999999999999999888887655432
Q ss_pred ----------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 113 ----------------------------------------------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 113 ----------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
++.++..+|.++...|++++|+..+++++...|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 204 (323)
T d1fcha_ 125 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 204 (323)
T ss_dssp C---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc
Confidence 2345778899999999999999999999999999
Q ss_pred chHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 147 RRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
++.. +..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|++
T Consensus 205 ~~~~-----------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 205 DYLL-----------WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp CHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred cccc-----------hhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 8877 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHH
Q psy17412 227 RKLV 230 (240)
Q Consensus 227 ~~~~ 230 (240)
...+
T Consensus 274 ~~~~ 277 (323)
T d1fcha_ 274 RGPR 277 (323)
T ss_dssp ----
T ss_pred hhhh
Confidence 6644
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.1e-25 Score=169.25 Aligned_cols=191 Identities=20% Similarity=0.164 Sum_probs=183.5
Q ss_pred HHHhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.....|..+..+..+|..+...|++++|...++++++.+|+++.++..+|.++...|++++|+..++++....|.....+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred hhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
..+|.++...|++++|+..|+++++++|+++.. +..+|.++...|++++|+..+++++...|.+...+.
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 309 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA-----------YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH-----------HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhh
Confidence 999999999999999999999999999998887 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
.+|.++...|++++|+..|+++++.+|+++.++..++.++.+
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 351 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4e-25 Score=160.60 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=148.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKA 121 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 121 (240)
++..+..++.+|.++...|++++|+..|++++.++|+++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 112 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHH----------------------hccCchHHHHHHHHHHHHhc------
Q psy17412 122 RAMHSLGQREEAKEYVRQLVEKYPTRRKLAIE----------------------QVRDSPVLYTNRALTLLHLQ------ 173 (240)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----------------------~~~~~~~~~~~la~~~~~~~------ 173 (240)
.++..+|++++|+..++++++..|++...... ..+.... .. ..+....+
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW-GW--NIVEFYLGNISEQT 189 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST-HH--HHHHHHTTSSCHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh-hh--hHHHHHHHHHHHHH
Confidence 99999999999999999999999987765000 0000000 01 11111122
Q ss_pred ccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 174 LYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 174 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
.++.+...+.......|....+++.+|.++..+|++++|+.+|++++..+|++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 222233333333444566778899999999999999999999999999999864
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.4e-24 Score=158.77 Aligned_cols=188 Identities=12% Similarity=0.127 Sum_probs=169.4
Q ss_pred HHHHhchhHHHHHHHhHhHHHHhC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHH
Q psy17412 37 EERKARQDIADHFKANGNKAFQSG-QYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMK 115 (240)
Q Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (240)
.....+|.+..+|..+|.++...| ++++|+..++++++.+|++..+|..+|.++..+|++++|++.+.++++++|++..
T Consensus 68 ~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~ 147 (315)
T d2h6fa1 68 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH 147 (315)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchH
Confidence 356779999999999999999876 5999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhccc------CchhhHHHHHhhcC
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLY------DPVLPDCDKALRLD 189 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~~l~~~ 189 (240)
+|..+|.++...|++++|+..++++++++|.+... |.++|.++...+.+ ++|+..+.++++.+
T Consensus 148 a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a-----------~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~ 216 (315)
T d2h6fa1 148 AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV-----------WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHH-----------HHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC
Confidence 99999999999999999999999999999999888 99999999887764 67999999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHh
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR--RKLVENYTQA 236 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~ 236 (240)
|++..+|..++.++...| .+++...+..++.+.|+. +.+...++.+
T Consensus 217 P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 264 (315)
T d2h6fa1 217 PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDI 264 (315)
T ss_dssp TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 999999999998866544 688999999999888865 3334444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.4e-21 Score=123.18 Aligned_cols=113 Identities=27% Similarity=0.277 Sum_probs=106.9
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
+.-+...|..++..|+|++|+..|+++++.+|+++.+|..+|.+|...|++++|+..+.++++++|+++.+|+.+|.++.
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
.+|++++|+..|+++++++|+++.. +..++.+.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~-----------~~~l~~l~ 115 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQL-----------KEGLQNME 115 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHH-----------HHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHh
Confidence 9999999999999999999999887 77777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=1.2e-22 Score=152.93 Aligned_cols=200 Identities=11% Similarity=0.005 Sum_probs=167.1
Q ss_pred HHHhchhHHHHHHHhHhHHHHhC--CHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHccCcCchHHHHHHHHhcCcccH
Q psy17412 38 ERKARQDIADHFKANGNKAFQSG--QYEAALVQYDKAIEQVRDSPVLY-TNRALTLLHLQLYDPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 114 (240)
....+|+....|..+|.++...+ ++++|+..+.+++..+|....++ ...|.++...+.+++|+..+++++..+|.+.
T Consensus 99 ~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~ 178 (334)
T d1dcea1 99 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred HHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence 34668889999999998888766 48999999999999999887775 4677888889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-------------------HHHhccCchHHHHHHHHHHHHhccc
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-------------------AIEQVRDSPVLYTNRALTLLHLQLY 175 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~~~~la~~~~~~~~~ 175 (240)
.+|..+|.++..+|++++|...+++++++.|.+... .+...+.....+..+|.++...+++
T Consensus 179 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhH
Confidence 999999999999998876655444444433332221 2233444555677889999999999
Q ss_pred CchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 176 DPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 176 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
.+|+..+.++++.+|.+..++..+|.++..+|++++|+.+|+++++++|.+...|..++..+
T Consensus 259 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 259 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988886554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.1e-20 Score=120.01 Aligned_cols=111 Identities=23% Similarity=0.203 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHH
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKA 195 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 195 (240)
-+...|..++..|++++|+..|+++++.+|+++.. +.++|.++...|++++|+..+.++++++|+++.+
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~-----------~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 73 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL-----------YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 73 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhh-----------hhcccccccccccccccchhhhhHHHhccchhhH
Confidence 35567888888888888888888888888888777 8888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
++.+|.++..+|++++|+..|+++++.+|+++.++..++++-
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 888888888888888888888888888888888888887764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.6e-20 Score=126.14 Aligned_cols=125 Identities=23% Similarity=0.344 Sum_probs=112.1
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
..++.+...|..++..|+|++|+..|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.++..+|.+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHH--HhcccCchh
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLL--HLQLYDPVL 179 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~ 179 (240)
+..+|++++|+..+++++++.|+++.. +..++.+.. ..+.+++|+
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~-----------~~~l~~~~~~~~~~~~~~a~ 134 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDA-----------KMKYQECNKIVKQKAFERAI 134 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877 666665543 333344443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.3e-20 Score=129.03 Aligned_cols=143 Identities=8% Similarity=0.001 Sum_probs=115.6
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
-.++..|..+...|+|++|++.|.++ .|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..
T Consensus 6 ~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 6 ISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 35567899999999999999999863 566788999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHH-----hccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh
Q psy17412 127 LGQREEAKEYVRQLVEKYPTRRKLAIE-----QVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 192 (240)
+|++++|+..|++++...+.+...... .......+++++|.++...|++++|++.+.++++..|+.
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999887664321000 001123456677777777777777777777777766653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.3e-20 Score=136.38 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=137.7
Q ss_pred hCCHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q psy17412 59 SGQYEAALVQYDKAIEQV----RDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAK 134 (240)
Q Consensus 59 ~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 134 (240)
..+.+.++..+++++... +..+.+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 345667777888887653 3446799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHH
Q psy17412 135 EYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKE 214 (240)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 214 (240)
..|+++++++|+++.. +.++|.++...|++++|+..++++++.+|++......++.++...+..+.+..
T Consensus 92 ~~~~~al~~~p~~~~a-----------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYA-----------HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 160 (259)
T ss_dssp HHHHHHHHHCTTCTHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhhhHHHHHHhhhhhh-----------HHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999998888 99999999999999999999999999999998888888888888887776666
Q ss_pred HHHHHHHhCCCc
Q psy17412 215 YIRELVEKYPTR 226 (240)
Q Consensus 215 ~~~~~~~~~p~~ 226 (240)
.........+..
T Consensus 161 ~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 161 LKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHHHSCCCS
T ss_pred HHHHhhccchhh
Confidence 666555555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.5e-19 Score=124.84 Aligned_cols=132 Identities=12% Similarity=0.075 Sum_probs=119.1
Q ss_pred HHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHH
Q psy17412 83 YTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLY 162 (240)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
+++.|..+...|++++|++.|.++ .|.++.+++++|.++..+|++++|+..|+++++++|+++.. +
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a-----------~ 73 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA-----------Y 73 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhh-----------H
Confidence 346799999999999999999864 55678899999999999999999999999999999999888 9
Q ss_pred HHHHHHHHHhcccCchhhHHHHHhhcChh----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q psy17412 163 TNRALTLLHLQLYDPVLPDCDKALRLDED----------------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTR 226 (240)
Q Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 226 (240)
.++|.++.++|++++|+..|++++...+. ...+++++|.++..+|++++|++.+.+++++.|+.
T Consensus 74 ~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999876442 25788999999999999999999999999998875
Q ss_pred HH
Q psy17412 227 RK 228 (240)
Q Consensus 227 ~~ 228 (240)
..
T Consensus 154 ~~ 155 (192)
T d1hh8a_ 154 RH 155 (192)
T ss_dssp GG
T ss_pred ch
Confidence 33
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=2.2e-20 Score=130.20 Aligned_cols=104 Identities=31% Similarity=0.469 Sum_probs=99.4
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
.+..+...|..++..|+|++|+..|++++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.++
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCch
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRR 148 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~ 148 (240)
..+|++++|+..|++++++.|++.
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccH
Confidence 999999999999999999888654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.9e-19 Score=119.83 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
+..+...|..+++.|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++...
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a--------- 80 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG--------- 80 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHH---------
Confidence 45577889999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHH--HcCCHHHHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH--NLGQREEAKEY 215 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~--~~g~~~~A~~~ 215 (240)
+..+|.++...|++++|+..++++++++|++..++..++.+.. ..+.+++|+..
T Consensus 81 --~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 81 --YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999998888877643 34445555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.2e-18 Score=116.63 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=110.6
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHHccCcCchHHHHHHHHhc
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---------------PVLYTNRALTLLHLQLYDPVLPDCDKALRL 109 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 109 (240)
.+..+...|..++..|+|++|+..|++++...|.. ..++.++|.||++.|++++|+..+++++.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 57778889999999999999999999999997753 346778999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCch
Q psy17412 110 DEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPV 178 (240)
Q Consensus 110 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 178 (240)
+|+++.+++.+|.++..+|++++|+..|+++++++|+++.. ...++.+....++..+.
T Consensus 92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~-----------~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA-----------KTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887 88888887766555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=4e-19 Score=130.79 Aligned_cols=179 Identities=12% Similarity=-0.017 Sum_probs=145.8
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHccCcCchHHHHHHHHhcCccc-----
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVR------DSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN----- 113 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----- 113 (240)
-++.+...|.+|...|+|++|++.|.+++++.+ +...++.++|.+|...|++++|++.+++++.+.+..
T Consensus 36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence 456788899999999999999999999999742 235689999999999999999999999999876543
Q ss_pred -HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 114 -MKAHLYKARAMHS-LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 114 -~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
..++..+|.++.. .|++++|+..|++++++.+..... +....++.++|.++...|+|++|+..|++++...+.
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~-----~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV-----ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch-----hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence 5678889988865 699999999999999875432111 112456899999999999999999999999988765
Q ss_pred h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q psy17412 192 N-------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRK 228 (240)
Q Consensus 192 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 228 (240)
. ...+...+.++...|+++.|...++++.+.+|..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~ 234 (290)
T d1qqea_ 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (290)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred chhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence 4 345678899999999999999999999999886544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=6.8e-19 Score=132.10 Aligned_cols=191 Identities=14% Similarity=0.073 Sum_probs=159.0
Q ss_pred HHHhchhHHHHHHHhHhHHH----------HhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC--cCchHHHHHH
Q psy17412 38 ERKARQDIADHFKANGNKAF----------QSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQL--YDPVLPDCDK 105 (240)
Q Consensus 38 ~~~~~~~~~~~~~~~a~~~~----------~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~ 105 (240)
....+|+...+|..++.++. ..|++++|+.++++++..+|++..+|..+|.++...++ +++|+..+.+
T Consensus 55 ~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 134 (334)
T d1dcea1 55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 134 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHH
Confidence 34568888877766655544 45568999999999999999999999999999988876 6799999999
Q ss_pred HHhcCcccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHH
Q psy17412 106 ALRLDEDNMKAH-LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDK 184 (240)
Q Consensus 106 ~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (240)
+++.+|.+..++ ...|.++...+.+++|+..++++++++|.+... +.++|.++...|++++|...+.+
T Consensus 135 al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a-----------~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS-----------WHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH-----------HHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHH-----------HHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999988876 567789999999999999999999999999888 99999999998888877666655
Q ss_pred HhhcChhh------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 185 ALRLDEDN------------------------------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 185 ~l~~~~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
+++..|.. ...+..++.++...|++.+|+..+.+++..+|.+..++..++
T Consensus 204 ~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 283 (334)
T d1dcea1 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 283 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 55554433 333345677888889999999999999999999999999998
Q ss_pred Hhhhc
Q psy17412 235 QAFEQ 239 (240)
Q Consensus 235 ~~~~~ 239 (240)
.++..
T Consensus 284 ~~~~~ 288 (334)
T d1dcea1 284 RALDP 288 (334)
T ss_dssp HHHCT
T ss_pred HHHHH
Confidence 87753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.78 E-value=3.5e-18 Score=113.60 Aligned_cols=119 Identities=24% Similarity=0.272 Sum_probs=107.0
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC----------------hHHHHHHHHHHHHccCcCchHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS----------------PVLYTNRALTLLHLQLYDPVLPDCDKAL 107 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (240)
..+..+...|..++..|+|.+|+..|.+++...+.. ..++.++|.+|+++|++++|+..+++++
T Consensus 15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al 94 (153)
T d2fbna1 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 94 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence 456778889999999999999999999999876542 2467889999999999999999999999
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhc
Q psy17412 108 RLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 108 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 173 (240)
+++|.++.+++.+|.++..+|++++|+..|+++++++|++..+ ...++.+..+.+
T Consensus 95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~-----------~~~l~~~~~kl~ 149 (153)
T d2fbna1 95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI-----------RNSYELCVNKLK 149 (153)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHHH
T ss_pred cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 777777766554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.78 E-value=9.1e-18 Score=113.38 Aligned_cols=122 Identities=25% Similarity=0.326 Sum_probs=109.6
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHHccCcCchHHHHHHHHh
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS---------------PVLYTNRALTLLHLQLYDPVLPDCDKALR 108 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (240)
..+..+...|..++..|+|.+|+..|++++...|.. ..++.++|.||..+|++++|+..+++++.
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 457788899999999999999999999999875442 34677899999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccC
Q psy17412 109 LDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYD 176 (240)
Q Consensus 109 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 176 (240)
++|++..+++.+|.++..+|++++|+..|++++.++|+++.. ...++.+....+.+.
T Consensus 93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~-----------~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA-----------RLQIFMCQKKAKEHN 149 (168)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH-----------HHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999887 888888776666544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=1e-18 Score=121.63 Aligned_cols=122 Identities=12% Similarity=0.045 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCch
Q psy17412 80 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSP 159 (240)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (240)
+..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|..+|++++|+..|+++++++|++...
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a--------- 74 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA--------- 74 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHH---------
Confidence 45567889999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHH
Q psy17412 160 VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEA 212 (240)
Q Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 212 (240)
|.++|.++..+|++++|+..|+++++++|++...+...+......++...+
T Consensus 75 --~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~ 125 (201)
T d2c2la1 75 --HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 125 (201)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999998887655554445555444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.1e-18 Score=115.30 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
+..+...|..++..|+|++|+..|++++...|..... ..........++.++|.||.+.|++++|+..++++++++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 3456677888888888888888888888877654322 011111223458899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+.
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.76 E-value=9.1e-18 Score=111.55 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
..+...|..++..|+|.+|+..|++++...+..... .....+....++.++|.+|.++|++++|+..++++++++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 456667888888888888888888888776543321 111112223568899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
|+++.+++.+|.++..+|++++|+..|+++++++|+++++...+..+..
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=9.8e-18 Score=113.42 Aligned_cols=138 Identities=19% Similarity=0.257 Sum_probs=100.2
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMH 125 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 125 (240)
+..+...|..++..|+|++|+..|.++++..+... +...........|....++.++|.++.
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh------------------hhhhhHHHHHhChhhHHHHHHHHHHHH
Confidence 34456789999999999999999999987543211 111122334455667777777888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH
Q psy17412 126 SLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN 205 (240)
Q Consensus 126 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 205 (240)
.+|++++|+..++++++++|+++.. ++.+|.++..+|++++|+..|+++++++|++..+...++.+...
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a-----------~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKA-----------LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 157 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhH-----------HHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888877766 88888888888888888888888888888877777777777666
Q ss_pred cCCHHHH
Q psy17412 206 LGQREEA 212 (240)
Q Consensus 206 ~g~~~~A 212 (240)
.....++
T Consensus 158 l~~~~~~ 164 (169)
T d1ihga1 158 IKAQKDK 164 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.75 E-value=6.3e-18 Score=106.23 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=91.6
Q ss_pred HHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17412 47 DHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS 126 (240)
Q Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 126 (240)
..++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q psy17412 127 LGQREEAKEYVRQLV 141 (240)
Q Consensus 127 ~~~~~~A~~~~~~a~ 141 (240)
+|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.3e-17 Score=106.02 Aligned_cols=112 Identities=15% Similarity=0.040 Sum_probs=98.2
Q ss_pred HHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc---cCcCchHHHHHHHHhcCccc--HHHHHHHHHHH
Q psy17412 50 KANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHL---QLYDPVLPDCDKALRLDEDN--MKAHLYKARAM 124 (240)
Q Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 124 (240)
..++..+...+++++|.+.|++++..+|+++.+++++|.++... +++++|+..+++++..+|.. ..+++.+|.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999864 45678999999999988655 55899999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL 172 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 172 (240)
..+|++++|+.+|+++++++|++..+ ...++.+..+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A-----------~~l~~~I~~~~ 119 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQA-----------KELERLIDKAM 119 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCHHH-----------HHHHHHHHHHH
Confidence 99999999999999999999999887 66666655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.7e-17 Score=105.41 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH---hcccCchhhHHHHHhhcChhh--H
Q psy17412 119 YKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH---LQLYDPVLPDCDKALRLDEDN--M 193 (240)
Q Consensus 119 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~--~ 193 (240)
.++..+...+++++|.+.|++++.++|.++.. ++++|.++.+ .+++++|+..|++++..+|.. .
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~-----------~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~ 72 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKST-----------QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH-----------HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHH-----------HHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHH
Confidence 46677788889999999999999999988877 9999998876 456667999999999887654 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 194 KAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
.+++++|.+|..+|++++|+.+|+++++++|++..+......+.+
T Consensus 73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 588899999999999999999999999999999888777665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.74 E-value=2.5e-17 Score=111.39 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 117 HLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
+...|..++..|+|.+|+..|+++++..+..... .....|....++.++|.++.++|++++|+..++++++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 4455666666777777777776666543322111 11222344566999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhh
Q psy17412 192 NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFE 238 (240)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 238 (240)
++.+++.+|.++..+|++++|+..|+++++++|+++.+...+..+..
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888887653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.73 E-value=3.2e-17 Score=110.64 Aligned_cols=124 Identities=20% Similarity=0.146 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH----HHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcC
Q psy17412 114 MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLD 189 (240)
Q Consensus 114 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 189 (240)
+..+...|..++..|+|.+|+..|++++...|..... .....+....++.++|.||..+|++++|+..++++++++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 4566778888888888888888888888765543221 112222234568899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 190 EDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 190 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988887764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=6.4e-19 Score=138.91 Aligned_cols=139 Identities=8% Similarity=-0.106 Sum_probs=93.8
Q ss_pred HHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHH
Q psy17412 88 LTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 167 (240)
.++...+.|+.|+..+.+++.++|++...+..+|..+...|++++|...+++++..+|. ..+.++|.
T Consensus 94 ~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------------~~~~~LG~ 160 (497)
T d1ya0a1 94 FLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-------------HCLVHLGD 160 (497)
T ss_dssp HHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH-------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-------------HHHHHHHH
Confidence 34444556666777777777778888888888999999999999999888888876653 23889999
Q ss_pred HHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q psy17412 168 TLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQAFEQ 239 (240)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 239 (240)
++...|++++|+.+|.++++++|++..++..+|.++...|++.+|+.+|.+++..+|..+.++.+++.++.+
T Consensus 161 l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.72 E-value=2.6e-17 Score=103.36 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHH
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHL 197 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 197 (240)
+.+|.++...|++++|+..++++++.+|+++.. +..+|.++...|++++|+..++++++.+|++..++.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 88 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEA-----------WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 88 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchh-----------hhhhhhhhhhhhhHHHhhcccccccccccccccchH
Confidence 445555555555555555555555555555444 555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~ 219 (240)
.+|.++..+|++++|++.+++.
T Consensus 89 ~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 89 ALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555555555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=8.3e-16 Score=113.80 Aligned_cols=155 Identities=13% Similarity=0.088 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 61 QYEAALVQYDKAIEQ-VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM-KAHLYKARAMHSLGQREEAKEYVR 138 (240)
Q Consensus 61 ~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~ 138 (240)
..++|...|+++++. .|.+...|...+......|+++.|...|++++...|.+. .+|...+......|+++.|...|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 345666666666653 556666666666666666666666666666666666543 356666666666666666666666
Q ss_pred HHHHcCCCchHHHHHhccCchHHHHHHHHHHHH-hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17412 139 QLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH-LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLGQREEAKEYIR 217 (240)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (240)
++++..|.+... +...|..... .|+.+.|...|+++++..|+++..|...+..+...|+++.|...|+
T Consensus 159 ~al~~~~~~~~~-----------~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe 227 (308)
T d2onda1 159 KAREDARTRHHV-----------YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHTSTTCCTHH-----------HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHhCCCcHHH-----------HHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 666666665555 5555554332 3556666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCc
Q psy17412 218 ELVEKYPTR 226 (240)
Q Consensus 218 ~~~~~~p~~ 226 (240)
+++...|.+
T Consensus 228 ~ai~~~~~~ 236 (308)
T d2onda1 228 RVLTSGSLP 236 (308)
T ss_dssp HHHHSSSSC
T ss_pred HHHHhCCCC
Confidence 666655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.9e-17 Score=104.62 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=94.2
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH-------HHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM-------KAH 117 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~ 117 (240)
.+..+..+|..++..|+|++|+.+|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|.+. .++
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999988764 467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy17412 118 LYKARAMHSLGQREEAKEYVRQLVEKYPT 146 (240)
Q Consensus 118 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (240)
..+|.++..++++++|+.+|++++...++
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 78888899999999999999999998876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1e-16 Score=117.70 Aligned_cols=192 Identities=11% Similarity=0.018 Sum_probs=147.0
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHH-ccCcCchHHHHHHHHhcCcc--
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLH-LQLYDPVLPDCDKALRLDED-- 112 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~-- 112 (240)
.+..+..+..+|.+|...|++++|++.|++++.+.+.. ..++..+|.++.. .|++++|++.+++++.+.+.
T Consensus 73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~ 152 (290)
T d1qqea_ 73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999999986654 5678889988865 69999999999999877432
Q ss_pred ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhc
Q psy17412 113 ----NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRL 188 (240)
Q Consensus 113 ----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 188 (240)
...++..+|.++..+|+|++|+..|++++...+..... .......+...|.++...|+++.|...++++++.
T Consensus 153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS----QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh----hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35578999999999999999999999999998876432 1112345778899999999999999999999999
Q ss_pred ChhhHH-----HHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 189 DEDNMK-----AHLYKARAMHN--LGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 189 ~~~~~~-----~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+|.... ....+..++.. .+.+++|+..|.++.+++|........+...+
T Consensus 229 ~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~k~~l 284 (290)
T d1qqea_ 229 DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (290)
T ss_dssp ---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Confidence 986543 23444444443 45689999999888887765555544444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.71 E-value=2.1e-17 Score=108.63 Aligned_cols=119 Identities=10% Similarity=-0.025 Sum_probs=87.3
Q ss_pred hHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Q psy17412 54 NKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEA 133 (240)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 133 (240)
..+.+.+.|++|+..|+++++.+|+++.++.++|.++...+++..+.+. .+.+++|
T Consensus 5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~------------------------~~~~~~A 60 (145)
T d1zu2a1 5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA------------------------KQMIQEA 60 (145)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH------------------------HHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH------------------------HHHHHHH
Confidence 3456677889999999999999999999999999998887777665442 2344667
Q ss_pred HHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcc-----------cCchhhHHHHHhhcChhhHHHHHHHHHH
Q psy17412 134 KEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQL-----------YDPVLPDCDKALRLDEDNMKAHLYKARA 202 (240)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~~l~~~~~~~~~~~~la~~ 202 (240)
+..|+++++++|+++.. ++++|.+|...|+ +++|+++|+++++++|++..++..++.+
T Consensus 61 i~~~~kAl~l~P~~~~a-----------~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 61 ITKFEEALLIDPKKDEA-----------VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhHH-----------HhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 77777777777777666 7777777766543 5677888888888888887777777766
Q ss_pred HHHcC
Q psy17412 203 MHNLG 207 (240)
Q Consensus 203 ~~~~g 207 (240)
....+
T Consensus 130 ~ka~~ 134 (145)
T d1zu2a1 130 AKAPQ 134 (145)
T ss_dssp HTHHH
T ss_pred HHHHH
Confidence 54333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.6e-16 Score=117.96 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=133.1
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc-------
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED------- 112 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------- 112 (240)
..++..+|.++...|++++|+..|++++...+.. ...+..++.++...|++..|...+.+++...+.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~ 130 (366)
T d1hz4a_ 51 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 130 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh
Confidence 4577778888888888888888888888765432 346677888888888888888888888765432
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------------------------------------
Q psy17412 113 -NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL----------------------------------------- 150 (240)
Q Consensus 113 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------------------------- 150 (240)
....+..+|.++...|+++.+...+.+++...+.....
T Consensus 131 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 210 (366)
T d1hz4a_ 131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 210 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCc
Confidence 23466778888999999999999998888876643221
Q ss_pred ---------------------HH---Hh--------ccCchHHHHHHHHHHHHhcccCchhhHHHHHhh------cChhh
Q psy17412 151 ---------------------AI---EQ--------VRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR------LDEDN 192 (240)
Q Consensus 151 ---------------------~~---~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~------~~~~~ 192 (240)
+. .. .+.....+.++|.++...|++++|...+++++. ..|..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (366)
T d1hz4a_ 211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 290 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH
Confidence 00 00 011234566788888899999999999888874 34566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 224 (240)
..++..+|.++..+|++++|+..+++++.+.+
T Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 291 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 77888899999999999999999999887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.4e-16 Score=99.66 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh---
Q psy17412 116 AHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN--- 192 (240)
Q Consensus 116 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--- 192 (240)
.+..+|..++..|+|++|+.+|+++++++|++... +.++|.+|..+|++++|+..++++++++|.+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~-----------~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~ 74 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY-----------ITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH-----------HHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH
Confidence 34456666666666666666666666666665555 6666666666666666666666666665554
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17412 193 ----MKAHLYKARAMHNLGQREEAKEYIRELVEKYPT 225 (240)
Q Consensus 193 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 225 (240)
..++..+|.++..++++++|+.+|++++..+++
T Consensus 75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 234556777777777888888888887777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=8.9e-15 Score=108.19 Aligned_cols=175 Identities=10% Similarity=-0.046 Sum_probs=157.1
Q ss_pred chhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 42 RQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSP-VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
.|.....|...+......|++++|...|++++...|.+. .+|...+......|+++.|...|.+++...|.+...+...
T Consensus 95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~ 174 (308)
T d2onda1 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 566778889999999999999999999999999998774 5789999999999999999999999999999999999998
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh----hHHH
Q psy17412 121 ARAMHS-LGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED----NMKA 195 (240)
Q Consensus 121 a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~ 195 (240)
|..... .|+.+.|...|+++++..|.++.. +...+......|+++.|...|+++++..|. ...+
T Consensus 175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~-----------w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~i 243 (308)
T d2onda1 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEY-----------VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhhhhhHHH-----------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 887554 689999999999999999998877 999999999999999999999999997663 3457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q psy17412 196 HLYKARAMHNLGQREEAKEYIRELVEKYPTRR 227 (240)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 227 (240)
|..........|+.+.+...++++.+..|...
T Consensus 244 w~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 244 WARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 78888888889999999999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.65 E-value=5e-16 Score=101.91 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=93.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHh----------cccCchhhHHHHHhhcChhh
Q psy17412 123 AMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHL----------QLYDPVLPDCDKALRLDEDN 192 (240)
Q Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~~l~~~~~~ 192 (240)
.+.+++.|++|+..|+++++++|+++.. +.++|.++... +.+++|+..|+++++++|++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~-----------~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~ 74 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADN-----------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 74 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHH-----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHH-----------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh
Confidence 4567788999999999999999999888 99999999865 44578999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 193 MKAHLYKARAMHNLGQ-----------REEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
+.+++++|.++..+|+ +++|..+|++++.++|++..++..++.+.
T Consensus 75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 9999999999988764 68999999999999999999999888654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.3e-15 Score=118.40 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=99.8
Q ss_pred hHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q psy17412 52 NGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQRE 131 (240)
Q Consensus 52 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 131 (240)
.+......+.|+.|+..+.+++..+|.+...+.++|.++...|++++|...+.+++..+|. .++..+|.++...|+++
T Consensus 92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~ 169 (497)
T d1ya0a1 92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTS 169 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHH
Confidence 3455566788889999998888999999999999999999999999999999999887654 67889999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcC
Q psy17412 132 EAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207 (240)
Q Consensus 132 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 207 (240)
+|+.+|+++++++|++... +.++|.++...|++.+|+.+|.+++...|..+.++.+++.++.+..
T Consensus 170 ~A~~~y~~A~~l~P~~~~~-----------~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 170 QAESYYRHAAQLVPSNGQP-----------YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHCTTBSHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCchHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999888 9999999999999999999999999999999999999998876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.56 E-value=1.7e-14 Score=95.81 Aligned_cols=100 Identities=24% Similarity=0.297 Sum_probs=86.9
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcc---
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDS------------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED--- 112 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--- 112 (240)
..+..|..++..|+|++|+..|++++++.|+. ..+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus 11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~ 90 (156)
T d2hr2a1 11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 90 (156)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence 34455889999999999999999999998764 357889999999999999999999999976542
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy17412 113 --------NMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTR 147 (240)
Q Consensus 113 --------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (240)
...+++++|.++..+|++++|+..|++++++.|+.
T Consensus 91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 34578999999999999999999999999987654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.5e-14 Score=85.94 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=73.7
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-------PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAH 117 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 117 (240)
.++..+.+|.+++..|+|++|+..|+++++..|.+ ..++.++|.++.+.|++++|+.+++++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 35678899999999999999999999999986654 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q psy17412 118 LYKARAMHSL 127 (240)
Q Consensus 118 ~~la~~~~~~ 127 (240)
.+++.+...+
T Consensus 84 ~Nl~~~~~~l 93 (95)
T d1tjca_ 84 GNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988765543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.51 E-value=1.2e-11 Score=88.99 Aligned_cols=185 Identities=12% Similarity=-0.027 Sum_probs=117.3
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
+|++++.+|..++..+++++|+++|+++.+. ++..+++.+|.+|.. ..++..|..++..+.... ++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence 3678999999999999999999999999765 578899999999987 567788888888877643 56777788
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHHHHHHhc
Q psy17412 121 ARAMHS----LGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRALTLLHLQ 173 (240)
Q Consensus 121 a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~~~~~~~ 173 (240)
|.++.. .++.+.|...++++.+..+..... ........+..+..+|.++....
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~ 156 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 156 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence 877765 467888888888888765543322 00111223444555555555432
Q ss_pred ccC----chhhHHHHHhhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy17412 174 LYD----PVLPDCDKALRLDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 174 ~~~----~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 237 (240)
... .+..+++.+.+ +.++.+.+.+|.++.. ..++++|+.+|+++.+. .++.+...++.++
T Consensus 157 ~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y 224 (265)
T d1ouva_ 157 GTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQ 224 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred Ccccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHH
Confidence 222 22233333322 2345555555555554 44555555555555554 2444555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.49 E-value=1.8e-14 Score=95.78 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=77.4
Q ss_pred HHHHHHHHccCcCchHHHHHHHHhcCccc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHH
Q psy17412 85 NRALTLLHLQLYDPVLPDCDKALRLDEDN------------MKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAI 152 (240)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 152 (240)
..|..++..|+|++|+..|++++++.|+. ..++.++|.++..+|++++|+..+++++++.|.......
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 44888899999999999999999887643 457899999999999999999999999987654322100
Q ss_pred HhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChh
Q psy17412 153 EQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDED 191 (240)
Q Consensus 153 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 191 (240)
...+....+++++|.++..+|++++|+..|++++++.|.
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 001112234666667777777777777777776666553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.3e-13 Score=82.23 Aligned_cols=78 Identities=15% Similarity=0.053 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHhcccCchhhHHHHHhhcChh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy17412 159 PVLYTNRALTLLHLQLYDPVLPDCDKALRLDED-------NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVE 231 (240)
Q Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 231 (240)
++..+.+|.++++.|+|++|+.+|+++++..|. ...++.++|.++..+|++++|+.+|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 445889999999999999999999999988664 3678999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy17412 232 NYTQA 236 (240)
Q Consensus 232 ~l~~~ 236 (240)
+++.+
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.42 E-value=3.2e-13 Score=96.87 Aligned_cols=129 Identities=12% Similarity=0.020 Sum_probs=88.6
Q ss_pred HHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHH
Q psy17412 90 LLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTL 169 (240)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 169 (240)
.+..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++++|++... +..++.++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~-----------~~~l~~ll 74 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG-----------ASQLRHLV 74 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH-----------HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHH
Confidence 3455677777777777777777777777777777777777777777777777777766655 66666666
Q ss_pred HHhcccCchhhHHHHH-hhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q psy17412 170 LHLQLYDPVLPDCDKA-LRLDEDNMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKL 229 (240)
Q Consensus 170 ~~~~~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 229 (240)
...+..+++.....+. +...|.....+...+.++...|++++|...++++.+..|..+..
T Consensus 75 ~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 5555555444433332 22356666777778888888899999999998888888876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.36 E-value=3.3e-13 Score=96.84 Aligned_cols=130 Identities=12% Similarity=-0.025 Sum_probs=108.9
Q ss_pred HhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Q psy17412 53 GNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREE 132 (240)
Q Consensus 53 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 132 (240)
+...+..|++++|+..|+++++.+|++..++..+|.+++..|++++|+..++++++++|++...+..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999998887777666
Q ss_pred HHHHHHHHHHc-CCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhH
Q psy17412 133 AKEYVRQLVEK-YPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 193 (240)
Q Consensus 133 A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 193 (240)
+.....+.... .|... ..+...+.++...|++++|...+.++.+..|..+
T Consensus 83 a~~~~~~~~~~~~p~~~-----------~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLGENEEL-----------TKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCCSCHHH-----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhcccCchHH-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 54443332222 23222 3377788999999999999999999999988754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=3.3e-12 Score=95.15 Aligned_cols=190 Identities=11% Similarity=0.024 Sum_probs=157.2
Q ss_pred HhchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccH
Q psy17412 40 KARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDS-----PVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 114 (240)
..++..++.....|.+++..|++++|+..++++++..|++ ..++..+|.++...|++++|+..+++++...+...
T Consensus 6 ~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~ 85 (366)
T d1hz4a_ 6 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 85 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 3455677888889999999999999999999999999876 34788899999999999999999999999988773
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhcc--CchHHHHHHHHHHHHhcccCchhhHHHHHh
Q psy17412 115 ------KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVR--DSPVLYTNRALTLLHLQLYDPVLPDCDKAL 186 (240)
Q Consensus 115 ------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 186 (240)
.++..++.++...|++..+...+.+++.+.+. ..... .....+..+|.++...|+++.+...+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 160 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE-----QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-----cccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 46788999999999999999999999886542 11111 123467788999999999999999999998
Q ss_pred hcChh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy17412 187 RLDED-----NMKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYT 234 (240)
Q Consensus 187 ~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 234 (240)
...+. ....+...+.++...|++.++...+.++....+..........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 76543 4677888999999999999999999999988776554444333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=1.2e-11 Score=83.40 Aligned_cols=122 Identities=12% Similarity=-0.001 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH-----------HHHhccCchHHHHHHHHHHHHhcccCchhhHHH
Q psy17412 115 KAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKL-----------AIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCD 183 (240)
Q Consensus 115 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (240)
..+...|......|++++|...|.+++.+.+..... .....+....++..++.++...|++++|+..++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~ 91 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 91 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 445555555566666666666666666655543211 011111223558999999999999999999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCcHHHHHHHHHhh
Q psy17412 184 KALRLDEDNMKAHLYKARAMHNLGQREEAKEYIREL-------VEKYPTRRKLVENYTQAF 237 (240)
Q Consensus 184 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~~p~~~~~~~~l~~~~ 237 (240)
++++.+|.+..+|..++.++...|++.+|+..|+++ +.+.|. ++....+..++
T Consensus 92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~il 151 (179)
T d2ff4a2 92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERIL 151 (179)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 999999999999999999999999999999999998 445664 45444444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=3.4e-11 Score=81.14 Aligned_cols=121 Identities=20% Similarity=0.098 Sum_probs=98.7
Q ss_pred hHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHH
Q psy17412 44 DIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARA 123 (240)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 123 (240)
...+.+...|......|++++|+..|.+++.+.+....... ....-.......+.+....++..++.+
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~------------~~~~w~~~~r~~l~~~~~~a~~~la~~ 76 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL------------RDFQFVEPFATALVEDKVLAHTAKAEA 76 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG------------TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC------------cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999999999999999887643211 111122233444556677889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhh
Q psy17412 124 MHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALR 187 (240)
Q Consensus 124 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 187 (240)
+...|++++|+..+++++..+|.+... |..++.++...|++.+|+..|+++.+
T Consensus 77 ~~~~g~~~~Al~~~~~al~~~P~~e~~-----------~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 77 EIACGRASAVIAELEALTFEHPYREPL-----------WTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHH-----------HHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHCCCchHHHHHHHHHHHhCCccHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999888 99999999999999999999998843
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.14 E-value=2e-08 Score=71.76 Aligned_cols=186 Identities=14% Similarity=-0.003 Sum_probs=127.2
Q ss_pred hhHHHHHHHhHhHHHH----hCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCcCchHHHHHHHHhcCcccH
Q psy17412 43 QDIADHFKANGNKAFQ----SGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDEDNM 114 (240)
Q Consensus 43 ~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 114 (240)
..++.+++.+|.++.. ..++..|..++..+... .++.+...+|.++.. .++.+.|...++.+....+ .
T Consensus 31 ~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~ 106 (265)
T d1ouva_ 31 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--A 106 (265)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H
T ss_pred CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhh--h
Confidence 4577889999999987 67899999999997765 466777788887765 3456678888888876543 2
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchHH-----------------------HHHhccCchHHHHHHHH
Q psy17412 115 KAHLYKARAMHS----LGQREEAKEYVRQLVEKYPTRRKL-----------------------AIEQVRDSPVLYTNRAL 167 (240)
Q Consensus 115 ~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~~~~la~ 167 (240)
.+...++..+.. ......+...+.+........... .......++.+.+++|.
T Consensus 107 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~ 186 (265)
T d1ouva_ 107 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGN 186 (265)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhh
Confidence 334444444443 234445555555444432211110 00111234666999999
Q ss_pred HHHH----hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 168 TLLH----LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 168 ~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
++.. ..++++|+.+|.++.+.. ++.+++.+|.+|.. ..++++|..+|+++...... .+...+..+
T Consensus 187 ~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~--~A~~~l~~l 259 (265)
T d1ouva_ 187 MYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK--GACDILKQL 259 (265)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH--HHHHHHHTC
T ss_pred hcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH--HHHHHHHHH
Confidence 9987 568999999999998874 67899999999986 44899999999999988643 445555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=1.3e-08 Score=62.61 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHh---cccCchhhHHHHHhhcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy17412 160 VLYTNRALTLLHL---QLYDPVLPDCDKALRLDEDN-MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENY 233 (240)
Q Consensus 160 ~~~~~la~~~~~~---~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 233 (240)
...++.|.++.+. ++.++++..++.+++.+|.+ .+.++.+|..|.++|++++|..+++++++++|++..+....
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 4589999999865 55678999999999999876 58999999999999999999999999999999998876543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=2.1e-08 Score=61.67 Aligned_cols=80 Identities=8% Similarity=-0.032 Sum_probs=66.4
Q ss_pred HHHHHHHhHhHHHHhC---CHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHH
Q psy17412 45 IADHFKANGNKAFQSG---QYEAALVQYDKAIEQVRDSP-VLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYK 120 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 120 (240)
..++.|..|.++.... +.++|+.+++.++..+|.+. .+++.+|..|+++|+|++|..+++++++.+|++..+....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 4678888888888654 56789999999999888764 7899999999999999999999999999999998876655
Q ss_pred HHHH
Q psy17412 121 ARAM 124 (240)
Q Consensus 121 a~~~ 124 (240)
-.+.
T Consensus 114 ~~Ie 117 (124)
T d2pqrb1 114 SMVE 117 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.63 E-value=3e-07 Score=58.32 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHH
Q psy17412 60 GQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHS----LGQREEAKE 135 (240)
Q Consensus 60 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~ 135 (240)
.|+++|+.+|+++.+.. ++.+.+.++. ....+.++|+.+++++.+. .++.+.+.+|.+|.. ..++++|+.
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 47888899998888764 4455556654 3345677888888888764 567788888888775 456788888
Q ss_pred HHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH----hcccCchhhHHHHHhhcCh
Q psy17412 136 YVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH----LQLYDPVLPDCDKALRLDE 190 (240)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~ 190 (240)
+|+++.+.. ++.. .+.+|.+|.. ..++.+|+.+|+++.+...
T Consensus 81 ~~~~aa~~g--~~~a-----------~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGLN--DQDG-----------CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHTT--CHHH-----------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhccC--cchH-----------HHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888887753 3333 7788888776 3467777788877776543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.59 E-value=3.8e-07 Score=57.85 Aligned_cols=112 Identities=12% Similarity=-0.005 Sum_probs=90.1
Q ss_pred cCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHH--
Q psy17412 94 QLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLH-- 171 (240)
Q Consensus 94 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 171 (240)
.|+++|+.+|+++.+.. ++.+.+.++. ....+.++|+.+++++.+. .++.. .+.+|.+|..
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a-----------~~~Lg~~y~~g~ 69 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNG-----------CRFLGDFYENGK 69 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHH-----------HHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhh-----------hhhHHHhhhhcc
Confidence 47889999999998764 4456666664 3457899999999999875 34444 8999999886
Q ss_pred --hcccCchhhHHHHHhhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q psy17412 172 --LQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHN----LGQREEAKEYIRELVEKYP 224 (240)
Q Consensus 172 --~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p 224 (240)
..++++|+.+|+++.+. .++.+.+.+|.+|.. ..+..+|+.+|+++.+...
T Consensus 70 ~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 70 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 45678999999999875 467889999999887 5689999999999988754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.025 Score=42.62 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=105.6
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy17412 57 FQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSLGQREEAKEY 136 (240)
Q Consensus 57 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 136 (240)
...+..+.+...+........+.......++ .....+++..+...+...-......+...|.+|..+..+|+.++|...
T Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 263 MGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp CSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 3456667777777766655544433333344 455678888888887765443344577889999999999999999999
Q ss_pred HHHHHHcCCCchHH-HHHhcc--------------C---chHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHH
Q psy17412 137 VRQLVEKYPTRRKL-AIEQVR--------------D---SPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLY 198 (240)
Q Consensus 137 ~~~a~~~~~~~~~~-~~~~~~--------------~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 198 (240)
|..+... ++.... +..... . ....-...+..+...|+...|...+..++... +..-...
T Consensus 342 ~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~ 418 (450)
T d1qsaa1 342 LHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQ 418 (450)
T ss_dssp HHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHH
T ss_pred HHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHH
Confidence 9998753 333222 000000 0 01123456677888899999988888776543 3445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q psy17412 199 KARAMHNLGQREEAKEYIREL 219 (240)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~ 219 (240)
++.+....|.++.|+....++
T Consensus 419 la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 419 LARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCChhHHHHHHHHH
Confidence 788889999999998776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.58 E-value=0.22 Score=35.71 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=89.6
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHSL 127 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 127 (240)
..-..|..+.+.|.|+.|..+|... .-+..+..++.+.++++.|.+.+.+. ++...|......+...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence 3445788888999999999888632 23445667888999999998888766 4567888888887777
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhhHHHHHHHHHHHHHcC
Q psy17412 128 GQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAMHNLG 207 (240)
Q Consensus 128 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 207 (240)
....-+... .... ..++.. ...+...+...|.+++.+.+++.++...+.+...+..++.++.+.+
T Consensus 83 ~e~~la~i~-~~~~---~~~~d~-----------l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 83 KEFRLAQMC-GLHI---VVHADE-----------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TCHHHHHHT-TTTT---TTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHH-HHHh---hcCHHH-----------HHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 665443111 0001 112222 5566777888899999999999999888888888888888877654
Q ss_pred CHHHHHHHHHH
Q psy17412 208 QREEAKEYIRE 218 (240)
Q Consensus 208 ~~~~A~~~~~~ 218 (240)
.++-.++++.
T Consensus 148 -~~kl~e~l~~ 157 (336)
T d1b89a_ 148 -PQKMREHLEL 157 (336)
T ss_dssp -HHHHHHHHHH
T ss_pred -hHHHHHHHHh
Confidence 4555555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=1.1 Score=33.30 Aligned_cols=173 Identities=10% Similarity=0.004 Sum_probs=109.1
Q ss_pred HHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHH----HHccCcCchHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17412 49 FKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTL----LHLQLYDPVLPDCDKALRLDEDNMKAHLYKARAM 124 (240)
Q Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 124 (240)
....|..-....+.+.|...+.......+.....+....... ...+..+.+...+........+.......++ ..
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~a 295 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MA 295 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HH
Confidence 344455555667888999988887776555544333322222 2345566677777766655444443333444 45
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHhccCchHHHHHHHHHHHHhcccCchhhHHHHHhhcChhh------------
Q psy17412 125 HSLGQREEAKEYVRQLVEKYPTRRKLAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKALRLDEDN------------ 192 (240)
Q Consensus 125 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------------ 192 (240)
...+++..+...+... |..+. ..+...+.+|..+...|+.+.|...|..+.... +.
T Consensus 296 l~~~~~~~~~~~~~~l----~~~~~-------~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~-~fYG~LAa~~Lg~~ 363 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARL----PMEAK-------EKDEWRYWQADLLLERGREAEAKEILHQLMQQR-GFYPMVAAQRIGEE 363 (450)
T ss_dssp HHHTCHHHHHHHHHHS----CTTGG-------GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHHHHHHHHTTCC
T ss_pred HHcCChHHHHHHHHhc----Ccccc-------cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCC-ChHHHHHHHHcCCC
Confidence 5678999888777653 22111 124458999999999999999999999876531 11
Q ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy17412 193 -----------------MKAHLYKARAMHNLGQREEAKEYIRELVEKYPTRRKLVENYTQA 236 (240)
Q Consensus 193 -----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 236 (240)
...-...+..+...|+...|...+..++... ++.-...++.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~l 422 (450)
T d1qsaa1 364 YELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARY 422 (450)
T ss_dssp CCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHH
T ss_pred CCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 1123456778899999999999998877543 34444444444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.08 E-value=1 Score=32.19 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=61.5
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCchHHHHHHH-HhcCcccH-------HH
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDPVLPDCDKA-LRLDEDNM-------KA 116 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~~~-------~~ 116 (240)
.++........+...|.+++.+.++..++...+.+...+..++.+|.+.+ .++-.+.++.. ...++... ..
T Consensus 98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l 176 (336)
T d1b89a_ 98 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHL 176 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCC
Confidence 33444556667778899999999999998887888888888988887653 33444444442 22222211 13
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q psy17412 117 HLYKARAMHSLGQREEAKEYV 137 (240)
Q Consensus 117 ~~~la~~~~~~~~~~~A~~~~ 137 (240)
|-.+..+|.+.|++++|+..+
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHH
Confidence 456777888888888887654
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.27 E-value=0.53 Score=25.52 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+..+-..|..+...|.|++||++.+++...
T Consensus 7 ~AH~~~RrAer~l~~~rydeAIech~kA~~y 37 (83)
T d2crba1 7 LAHQQSRRADRLLAAGKYEEAISCHRKATTY 37 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666788888899999999888877653
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.12 E-value=3.3 Score=27.55 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=27.9
Q ss_pred HHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCC
Q psy17412 48 HFKANGNKAFQSGQYEAALVQYDKAIEQVRDS 79 (240)
Q Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 79 (240)
.+..+|...-+.++|++.+.+++++++.+|.-
T Consensus 5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eL 36 (230)
T d2o02a1 5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAEL 36 (230)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCC
Confidence 46678889999999999999999999998764
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.87 E-value=1.1 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17412 193 MKAHLYKARAMHNLGQREEAKEYIRELV 220 (240)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 220 (240)
+..+-..|.-+...|+|++|+++.+++.
T Consensus 8 AH~~~RrAer~l~~~rydeAIech~kA~ 35 (83)
T d2crba1 8 AHQQSRRADRLLAAGKYEEAISCHRKAT 35 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566777778888888777666554
|
| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Alkylsulfatase-like domain: Alkylsulfatase SdsA1 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.51 E-value=1.8 Score=32.83 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=48.7
Q ss_pred hchhHHHHHHHhHhHHHHhCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCcCc
Q psy17412 41 ARQDIADHFKANGNKAFQSGQYEAALVQYDKAIEQVRDSPVLYTNRALTLLHLQLYDP 98 (240)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 98 (240)
+-..-.+.....|...+..|+|.-|.++.+.++..+|++..+...++.++.++|.-.+
T Consensus 425 ~~~GG~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 482 (505)
T d2cfua2 425 EYMGGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 482 (505)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCc
Confidence 3344567788888899999999999999999999999999999999999988876554
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.18 E-value=1 Score=25.31 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=22.7
Q ss_pred HHHHHHHhHhHHHHhCCHHHHHHHHHHHHHh
Q psy17412 45 IADHFKANGNKAFQSGQYEAALVQYDKAIEQ 75 (240)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 75 (240)
.+..+...|..+-..|+|++|+.+|..+++.
T Consensus 14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 44 (93)
T d1wfda_ 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445666777777888888888888887664
|
| >d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Open three-helical up-and-down bundle superfamily: Mitochondrial import receptor subunit Tom20 family: Mitochondrial import receptor subunit Tom20 domain: Mitochondrial import receptor subunit Tom20 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.53 E-value=1.2 Score=24.97 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy17412 198 YKARAMHNLGQREEAKEYIRELVEKYPTRRKLVEN 232 (240)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (240)
.+|..+...|+++++..+|-+++...|.-.+....
T Consensus 25 ~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP~~LL~i 59 (95)
T d1om2a_ 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 59 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555555566666665555555555544444333
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=80.62 E-value=6 Score=26.37 Aligned_cols=59 Identities=8% Similarity=-0.033 Sum_probs=37.0
Q ss_pred HHHHHHhHhHHHHhCCHHHHHHHHHHHHHh--cCC-ChHHHHHHHHHHHH-ccCcCchHHHHH
Q psy17412 46 ADHFKANGNKAFQSGQYEAALVQYDKAIEQ--VRD-SPVLYTNRALTLLH-LQLYDPVLPDCD 104 (240)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~-~~~~~~~la~~~~~-~~~~~~A~~~~~ 104 (240)
-+.+..+|...-+.++|++.+.+.+++++. +|. +..=...+..+|-. .|....+...+.
T Consensus 4 Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~ 66 (236)
T d1o9da_ 4 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIIS 66 (236)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345677888999999999999999999987 444 33333334444422 233334444443
|