Psyllid ID: psy17416
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | 2.2.26 [Sep-21-2011] | |||||||
| Q5RDZ2 | 319 | Lambda-crystallin homolog | yes | N/A | 0.568 | 0.517 | 0.493 | 4e-41 | |
| Q9Y2S2 | 319 | Lambda-crystallin homolog | yes | N/A | 0.568 | 0.517 | 0.493 | 4e-41 | |
| Q8SQ26 | 322 | Lambda-crystallin homolog | yes | N/A | 0.568 | 0.512 | 0.481 | 1e-34 | |
| Q99KP3 | 319 | Lambda-crystallin homolog | yes | N/A | 0.568 | 0.517 | 0.487 | 5e-34 | |
| Q811X6 | 319 | Lambda-crystallin homolog | yes | N/A | 0.565 | 0.514 | 0.484 | 2e-33 | |
| P14755 | 319 | Lambda-crystallin OS=Oryc | yes | N/A | 0.568 | 0.517 | 0.475 | 1e-32 | |
| Q8SPX7 | 321 | Lambda-crystallin homolog | yes | N/A | 0.568 | 0.514 | 0.445 | 6e-31 | |
| D7URM0 | 321 | L-carnitine dehydrogenase | N/A | N/A | 0.389 | 0.352 | 0.415 | 1e-20 | |
| Q8CUW0 | 307 | L-carnitine dehydrogenase | yes | N/A | 0.389 | 0.368 | 0.423 | 2e-20 | |
| Q92NF5 | 496 | L-carnitine dehydrogenase | yes | N/A | 0.537 | 0.314 | 0.365 | 2e-20 |
| >sp|Q5RDZ2|CRYL1_PONAB Lambda-crystallin homolog OS=Pongo abelii GN=CRYL1 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 111/166 (66%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G+IG++WAM+FAS G++V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ L
Sbjct: 15 GVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISG P ++E +E A+ IQE VPE L++K +++ +D + ILSSSTS +PS L
Sbjct: 75 ISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY+IPLVE+VP T+ + RT +M +IG
Sbjct: 135 LVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIG 180
|
Pongo abelii (taxid: 9601) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 5 |
| >sp|Q9Y2S2|CRYL1_HUMAN Lambda-crystallin homolog OS=Homo sapiens GN=CRYL1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 111/166 (66%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G+IG++WAM+FAS G++V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ L
Sbjct: 15 GVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISG P ++E +E A+ IQE VPE L++K +++ +D + ILSSSTS +PS L
Sbjct: 75 ISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY+IPLVE+VP T+ + RT +M +IG
Sbjct: 135 LVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIG 180
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q8SQ26|CRYL1_PIG Lambda-crystallin homolog OS=Sus scrofa GN=CRYL1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 109/166 (65%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FAS G++V LYD+ +Q+ A +TI+ ++ Q G LKGSL EEQ L
Sbjct: 18 GLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLEQSGALKGSLGAEEQLAL 77
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISG LRE +E + IQE VPE L++K Q++ +D + N +LSSS+S LPS L
Sbjct: 78 ISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNVVLSSSSSCLLPSKLFAG 137
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q +VAHPVNPPY +PLVE+VP T+ + RT +M +IG
Sbjct: 138 LVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMARTYALMRQIG 183
|
Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q99KP3|CRYL1_MOUSE Lambda-crystallin homolog OS=Mus musculus GN=Cryl1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 108/166 (65%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FAS G+KV LYD+ +QI +A I+ ++ Q G LKGSLS E Q L
Sbjct: 15 GLIGRSWAMLFASGGFKVKLYDIEQQQITDALENIRKEMKSLEQSGSLKGSLSAERQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISG L E +E A+ IQE VPE L++K +++ +D + ILSSS+S LPS L
Sbjct: 75 ISGCGNLAEAVEGAVHIQECVPENLELKKKIFAQLDRIVDDRVILSSSSSCLLPSKLFSG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY++PLVE+VP T+ + RT +M +IG
Sbjct: 135 LAHVKQCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKIG 180
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q811X6|CRYL1_RAT Lambda-crystallin homolog OS=Rattus norvegicus GN=Cryl1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 108/165 (65%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FAS G+KV LYD+ +QI NA +I+ ++ Q G LKGSL E+Q L
Sbjct: 15 GLIGRSWAMLFASGGFKVKLYDIEQQQITNALESIRKEMKSLEQSGSLKGSLGAEQQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISG L E +E A+ IQE VPE L++K +++ +D + ILSSS+S LPS L
Sbjct: 75 ISGCGNLAEAVEGAMHIQECVPENLELKKKIFAQLDRIVDDQVILSSSSSCLLPSKLFTG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 287
H Q IVAHPVNPPY++PLVE+VP T+ + RT +M +I
Sbjct: 135 LAHVKQCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKI 179
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|P14755|CRYL1_RABIT Lambda-crystallin OS=Oryctolagus cuniculus GN=CRYL1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 104/166 (62%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G++WAM+FAS G++V LYD+ QI A I+ ++ Q G LKGSLS EEQ L
Sbjct: 15 GLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
IS L E +E + IQE VPE L +K +++ +D + +LSSS+S LPS L
Sbjct: 75 ISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY+IPLVE+VP TS + RT +M +IG
Sbjct: 135 LAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIG 180
|
Functions as crystallin in the rabbit eye lens. Has high L-gulonate 3-dehydrogenase activity. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q8SPX7|CRYL1_BOVIN Lambda-crystallin homolog OS=Bos taurus GN=CRYL1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 107/166 (64%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FASAG++V L+D+ Q+ +A +++ ++ G LKG L EEQ L
Sbjct: 18 GLIGRSWAMLFASAGFRVKLFDIEPRQVTDALVSLRKEMKMLELSGYLKGELGAEEQLSL 77
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISG LRE +E A+ +QE VPE L++K +++ +D + ILSSS+S LPS L
Sbjct: 78 ISGCSDLREAVEGALHVQECVPENLELKRKLFAQLDKIADDHVILSSSSSCLLPSKLFAG 137
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q +VAHPVNPPY++PLVE+VP T+ + RT +M +G
Sbjct: 138 LAHVKQCLVAHPVNPPYYVPLVELVPHPETAPATVDRTYALMRRVG 183
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|D7URM0|LCDH_PSESP L-carnitine dehydrogenase OS=Pseudomonas sp. GN=lcdH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 63
+ EC+ DA FIQES PE L +K ++ I + I++SSTS LPS E S+H +
Sbjct: 77 IEECVRDADFIQESAPERLDLKLDLHAKISAAAKPDAIIASSTSGLLPSEFYESSSHPER 136
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+V HP NP Y +PLVEIV T+ I + I TE+GM+P+ + E+ GF +R+
Sbjct: 137 CVVGHPFNPVYLLPLVEIVGGRHTAPEAIEAAKGIYTELGMRPLHVRKEVPGFIADRL 194
|
Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine. Is specific for L-carnitine and NAD(+) as substrates since D-carnitine, other carnitine analogs such as choline and betaine, and NADP(+) are not substrates. Despite a high similarity to 3-hydroxyacyl-CoA dehydrogenases, cannot dehydrogenate 3-hydroxybutylate and 3-hydroxybutyl-CoA. Is probably involved in a L-carnitine degradation pathway that allows Xanthomonas translucens to grow on L-carnitine as the sole source of carbon and nitrogen. Xanthomonas campestris pv. translucens (taxid: 343) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 8 |
| >sp|Q8CUW0|LCDH_OCEIH L-carnitine dehydrogenase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=lcdH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 63
+ E ++DA IQESVPE ++KH V + ID F SNTI+ SSTS P+ L H +
Sbjct: 71 IEEAVKDADLIQESVPERYELKHGVLKEIDRFAHSNTIIGSSTSGIKPTDLQIGLNHPER 130
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+VAHP NP Y +PLVEIV T++ + R + MKP+ + EI GF +R+
Sbjct: 131 LVVAHPFNPVYLLPLVEIVGGEATTKEITNRASVYYESLQMKPMVIEKEIEGFVADRL 188
|
Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine. Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) (taxid: 221109) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 8 |
| >sp|Q92NF5|LCDH_RHIME L-carnitine dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=lcdH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 88/175 (50%), Gaps = 19/175 (10%)
Query: 123 GLIGQAWAMIFASAGYKVSLYD-------VLSEQIENAKNTIQHTLQDYHQKGCLKGSLS 175
G+IG AWA FA AG V+++D ++ E + NA+ G L +++
Sbjct: 13 GVIGGAWAARFALAGIDVNIFDPHPEAERIIGEVMANAERAY----------GML--TMA 60
Query: 176 PEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 235
P G + ++E +E +IQESVPE L +K V ID + ++ SSTS L
Sbjct: 61 PLPPRGKFTFCRSIQEAVEGVDWIQESVPERLPLKRGVINEIDAAARPDALIGSSTSGLL 120
Query: 236 PSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
PS L H + VAHP NP Y +PLVE+V TS I R E + EIGMK
Sbjct: 121 PSDLQAEMKHPERMFVAHPYNPVYLLPLVELVGGRKTSPETIRRAEEAVAEIGMK 175
|
Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| 195124585 | 315 | GI18410 [Drosophila mojavensis] gi|19391 | 0.575 | 0.530 | 0.523 | 4e-47 | |
| 158285772 | 315 | AGAP007378-PB [Anopheles gambiae str. PE | 0.575 | 0.530 | 0.511 | 7e-47 | |
| 195040405 | 318 | GH12278 [Drosophila grimshawi] gi|193900 | 0.575 | 0.525 | 0.505 | 2e-46 | |
| 45549573 | 315 | CG9914 [Drosophila melanogaster] gi|3358 | 0.575 | 0.530 | 0.511 | 3e-46 | |
| 195351396 | 318 | GM13412 [Drosophila sechellia] gi|194124 | 0.575 | 0.525 | 0.511 | 4e-46 | |
| 195134454 | 313 | GI10976 [Drosophila mojavensis] gi|19390 | 0.575 | 0.533 | 0.5 | 1e-45 | |
| 321464503 | 317 | hypothetical protein DAPPUDRAFT_306692 [ | 0.575 | 0.526 | 0.505 | 2e-45 | |
| 195448304 | 316 | GK25055 [Drosophila willistoni] gi|19416 | 0.575 | 0.528 | 0.511 | 2e-45 | |
| 194893905 | 315 | GG19334 [Drosophila erecta] gi|190649613 | 0.575 | 0.530 | 0.505 | 3e-45 | |
| 312384823 | 304 | hypothetical protein AND_01493 [Anophele | 0.582 | 0.555 | 0.488 | 6e-45 |
| >gi|195124585|ref|XP_002006772.1| GI18410 [Drosophila mojavensis] gi|193911840|gb|EDW10707.1| GI18410 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 120/168 (71%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG+AWA++FASAGY+V LYD+L QI A + ++ LQ KG L+G+L+ QF L
Sbjct: 12 GLIGRAWALLFASAGYRVQLYDILESQIATALDELREELQQLEAKGALRGNLTAAAQFEL 71
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISG L+E ++DA+ IQE VPE LQ+K +Y +D + T+L+SSTS+F+PS+ SE
Sbjct: 72 ISGCTQLKELVQDALHIQECVPEQLQLKRSLYAQLDDLLEPQTVLASSTSTFMPSLFSEK 131
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
RSQ +VAHP+NPPYFIPLVE+VPA WT+E + RTR +M +G +
Sbjct: 132 LKRRSQILVAHPLNPPYFIPLVELVPAPWTTEEAVERTRLLMLTLGQR 179
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285772|ref|XP_308454.4| AGAP007378-PB [Anopheles gambiae str. PEST] gi|347965269|ref|XP_003435742.1| AGAP013544-PA [Anopheles gambiae str. PEST] gi|333466437|gb|EGK96241.1| AGAP013544-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 121/168 (72%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FA GY+V++YD++ E +E A + L+ ++G ++G+LS EQF
Sbjct: 16 GLIGRSWAMLFAGVGYQVTIYDIIPEIVEKALKETKLELESVEKQGTIRGTLSAAEQFAC 75
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I GT L++ + DAI++QE VPE L IK ++Y +D + NTIL+SSTS+F+PS+ SE
Sbjct: 76 IRGTDNLKDAVTDAIYVQECVPERLDIKKKLYGELDGLVGPNTILASSTSTFMPSLFSED 135
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
HR+Q +VAHPVNPPY++PLVEIVPA WT T+ RE+MTEIG K
Sbjct: 136 LKHRAQVLVAHPVNPPYYVPLVEIVPAPWTKPEYTTKARELMTEIGQK 183
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195040405|ref|XP_001991062.1| GH12278 [Drosophila grimshawi] gi|193900820|gb|EDV99686.1| GH12278 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 122/168 (72%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++W+M+FAS GY+V+LYD+L EQ++ A Q L + KG L+G L+ ++QF
Sbjct: 16 GLIGRSWSMLFASVGYQVTLYDILPEQVQGALTATQKELLNLETKGLLRGKLTAKDQFSC 75
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISGT ++E + A FIQE +PE L+ K ++++ +D + SNTILSSSTS+FLPS+ + +
Sbjct: 76 ISGTNDIKELAKGAFFIQECIPEKLEWKQELFKKLDDVVDSNTILSSSTSTFLPSLFTAN 135
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
H+ +V+HPVNPPY++PLVEIVPA WT V+ RTR++M EIG K
Sbjct: 136 LKHKHNTVVSHPVNPPYYVPLVEIVPAPWTKPEVVQRTRDLMDEIGQK 183
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|45549573|ref|NP_573114.2| CG9914 [Drosophila melanogaster] gi|33589300|gb|AAQ22417.1| RH68464p [Drosophila melanogaster] gi|45447016|gb|AAF48586.2| CG9914 [Drosophila melanogaster] gi|220959622|gb|ACL92354.1| CG9914-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 118/168 (70%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++W+M+FAS GY+V LYD+L EQ+ A Q LQD KG L+G L+ +QF
Sbjct: 14 GLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQKELQDLEAKGLLRGKLTAAQQFAC 73
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISGT L+E ++ AIF+QE +PE L +K +Y+ +D + NTILSSSTS+FLPS+ S
Sbjct: 74 ISGTNDLKELVKGAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSAD 133
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
+++ +V+HPVNPPY++PLVEIVPA WT + +TR +M EIG K
Sbjct: 134 LKNKANVLVSHPVNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQK 181
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195351396|ref|XP_002042220.1| GM13412 [Drosophila sechellia] gi|194124063|gb|EDW46106.1| GM13412 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 118/168 (70%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++W+M+FAS GY+V LYD+L EQ+ A Q LQD KG L+G L+ +QF
Sbjct: 17 GLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQKELQDLEAKGLLRGKLTAAQQFAC 76
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISGT L+E ++ AIF+QE +PE L +K +Y+ +D + NTILSSSTS+FLPS+ S
Sbjct: 77 ISGTNDLKELVQGAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSAD 136
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
+++ +V+HPVNPPY++PLVEIVPA WT + +TR +M EIG K
Sbjct: 137 LKNKANVLVSHPVNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQK 184
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195134454|ref|XP_002011652.1| GI10976 [Drosophila mojavensis] gi|193906775|gb|EDW05642.1| GI10976 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 120/168 (71%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++W+M+FAS GY+V LYD+L EQ++ A Q L + KG L+G L+ +QF
Sbjct: 10 GLIGRSWSMLFASVGYQVMLYDILPEQVQGALKATQKELVELEAKGLLRGKLNAAQQFSC 69
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISGT ++E ++ AIFIQE +PE L K ++++ +D + NTILSSSTS+FLPS+ + +
Sbjct: 70 ISGTNDIKELVKGAIFIQECIPEKLDWKQELFKKLDDVVEDNTILSSSTSTFLPSLFTAN 129
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
H+ +V+HPVNPPY++PLVEIVPA WT V+ +TR++M EIG K
Sbjct: 130 LKHKQNTVVSHPVNPPYYVPLVEIVPAPWTKPEVVQKTRDLMDEIGQK 177
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321464503|gb|EFX75510.1| hypothetical protein DAPPUDRAFT_306692 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 118/168 (70%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FA AGY V LYDV E +ENA I+ LQ G L+G+L+ EQ L
Sbjct: 12 GLIGRSWAMLFAGAGYNVHLYDVTQELVENAIKDIEEQLQALATSGLLRGNLNASEQLKL 71
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I+GT L+EC++ A+++QE VPE L++K +V+ +D + + I++SSTS LPS+ SE+
Sbjct: 72 ITGTKTLKECVQGALYVQECVPENLELKKKVFAELDALVDDSAIIASSTSCTLPSLFSEN 131
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
HR IVAHPVNPP+++PLVE+VPA WTS V + R+IM E+G K
Sbjct: 132 MKHRQNVIVAHPVNPPFYVPLVELVPAPWTSPEVAIKARQIMEELGQK 179
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195448304|ref|XP_002071598.1| GK25055 [Drosophila willistoni] gi|194167683|gb|EDW82584.1| GK25055 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 117/168 (69%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++W+M+FAS GY+V LYD+L EQ+ A Q L D KG L+G L+ +QF
Sbjct: 15 GLIGRSWSMLFASVGYQVVLYDILPEQVATALKQTQKELLDMESKGLLRGKLNAVQQFSC 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISGT ++E ++ AI IQE +PE L +K +Y+ +D + NTILSSSTS+FLPS+ S
Sbjct: 75 ISGTNDIKELVKGAILIQECIPERLDLKKALYKQLDDVVDDNTILSSSTSTFLPSLFSAD 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
H+ +V+HPVNPPY++PLVEIVPA WT ++ +TR +MTEIG K
Sbjct: 135 LKHKHNVVVSHPVNPPYYVPLVEIVPAPWTKPELVQKTRALMTEIGQK 182
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194893905|ref|XP_001977964.1| GG19334 [Drosophila erecta] gi|190649613|gb|EDV46891.1| GG19334 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 117/168 (69%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++W+M+FAS GY+V LYD+L EQ+ A Q L D KG L+G L+ +QF
Sbjct: 14 GLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQKELLDLEAKGLLRGKLTAAQQFAC 73
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
ISGT L+E ++ AIF+QE +PE L +K +Y+ +D + NTILSSSTS+FLPS+ S
Sbjct: 74 ISGTNDLKELVKGAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSAD 133
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
+++ +V+HPVNPPY++PLVEIVPA WT + +TR +M EIG K
Sbjct: 134 LKNKANVLVSHPVNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQK 181
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312384823|gb|EFR29456.1| hypothetical protein AND_01493 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 119/170 (70%)
Query: 121 IHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQF 180
+ GLIG++WAM+FA GY+V++YD++ + + A + L ++G L+G+L+ EQF
Sbjct: 3 LDGLIGRSWAMLFAGVGYQVTIYDIIPDIVSKALVETERELNKLEKEGLLRGALTAAEQF 62
Query: 181 GLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS 240
ISGT L+ + A+++QE VPE L IK ++Y +D F+ +TIL+SSTS+F+PS+ S
Sbjct: 63 ACISGTDNLKAAITGALYVQECVPERLDIKKKLYGEVDGFVGPDTILASSTSTFMPSLFS 122
Query: 241 EHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
E HRSQ +VAHPVNPPY++PLVEIVPA WT + RE+MTEIG K
Sbjct: 123 EDLKHRSQVLVAHPVNPPYYVPLVEIVPAPWTKPEFTAKARELMTEIGQK 172
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| FB|FBgn0030737 | 315 | CG9914 [Drosophila melanogaste | 0.579 | 0.533 | 0.428 | 1.9e-35 | |
| FB|FBgn0033949 | 315 | CG10131 [Drosophila melanogast | 0.579 | 0.533 | 0.422 | 2.2e-34 | |
| UNIPROTKB|Q9Y2S2 | 319 | CRYL1 "Lambda-crystallin homol | 0.572 | 0.520 | 0.433 | 1.8e-32 | |
| UNIPROTKB|Q5RDZ2 | 319 | CRYL1 "Lambda-crystallin homol | 0.572 | 0.520 | 0.433 | 1.8e-32 | |
| MGI|MGI:1915881 | 319 | Cryl1 "crystallin, lambda 1" [ | 0.572 | 0.520 | 0.427 | 2e-31 | |
| UNIPROTKB|Q8SQ26 | 322 | CRYL1 "Lambda-crystallin homol | 0.572 | 0.515 | 0.421 | 2.6e-31 | |
| UNIPROTKB|P14755 | 319 | CRYL1 "Lambda-crystallin" [Ory | 0.572 | 0.520 | 0.421 | 6.9e-31 | |
| RGD|631427 | 319 | Cryl1 "crystallin, lambda 1" [ | 0.568 | 0.517 | 0.424 | 6.9e-31 | |
| UNIPROTKB|E2R471 | 387 | CRYL1 "Uncharacterized protein | 0.572 | 0.428 | 0.409 | 3e-30 | |
| UNIPROTKB|F1NPU2 | 321 | CRYL1 "Uncharacterized protein | 0.572 | 0.517 | 0.379 | 5.6e-29 |
| FB|FBgn0030737 CG9914 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 72/168 (42%), Positives = 102/168 (60%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++W+M+FAS GY+V LYD+L EQ+ A Q LQD KG L+G L+ +QF
Sbjct: 14 GLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQKELQDLEAKGLLRGKLTAAQQFAC 73
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
ISGT L+E ++ AIF+QE +PE L +K +Y+ +D +
Sbjct: 74 ISGTNDLKELVKGAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSAD 133
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
+++ +V+HPVNPPY++PLVEIVPA WT + +TR +M EIG K
Sbjct: 134 LKNKANVLVSHPVNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQK 181
|
|
| FB|FBgn0033949 CG10131 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 71/168 (42%), Positives = 97/168 (57%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG+AWAM+FA+AGY+V LYD+L Q+ A + L ++ L+G++ EQF L
Sbjct: 12 GLIGRAWAMLFAAAGYRVQLYDILESQLATALQELDKDLHRLEEQSALRGNIRASEQFAL 71
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
I T L E +A+ IQE VPE+L +K +Y +D + E
Sbjct: 72 IGVTTRLEELTREAVHIQECVPEVLHLKKSLYSQLDELLEEQTVVASSTSTFMPSLYSEG 131
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
R Q +VAHP+NPPYFIPLVEIVPA WTS + RTR++M +G +
Sbjct: 132 LQKRQQMLVAHPLNPPYFIPLVEIVPAPWTSPSAVERTRDLMLSLGQR 179
|
|
| UNIPROTKB|Q9Y2S2 CRYL1 "Lambda-crystallin homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 72/166 (43%), Positives = 100/166 (60%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G+IG++WAM+FAS G++V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ L
Sbjct: 15 GVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
ISG P ++E +E A+ IQE VPE L++K +++ +D +
Sbjct: 75 ISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY+IPLVE+VP T+ + RT +M +IG
Sbjct: 135 LVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIG 180
|
|
| UNIPROTKB|Q5RDZ2 CRYL1 "Lambda-crystallin homolog" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 72/166 (43%), Positives = 100/166 (60%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G+IG++WAM+FAS G++V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ L
Sbjct: 15 GVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
ISG P ++E +E A+ IQE VPE L++K +++ +D +
Sbjct: 75 ISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY+IPLVE+VP T+ + RT +M +IG
Sbjct: 135 LVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIG 180
|
|
| MGI|MGI:1915881 Cryl1 "crystallin, lambda 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/166 (42%), Positives = 97/166 (58%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FAS G+KV LYD+ +QI +A I+ ++ Q G LKGSLS E Q L
Sbjct: 15 GLIGRSWAMLFASGGFKVKLYDIEQQQITDALENIRKEMKSLEQSGSLKGSLSAERQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
ISG L E +E A+ IQE VPE L++K +++ +D +
Sbjct: 75 ISGCGNLAEAVEGAVHIQECVPENLELKKKIFAQLDRIVDDRVILSSSSSCLLPSKLFSG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY++PLVE+VP T+ + RT +M +IG
Sbjct: 135 LAHVKQCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKIG 180
|
|
| UNIPROTKB|Q8SQ26 CRYL1 "Lambda-crystallin homolog" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 70/166 (42%), Positives = 97/166 (58%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FAS G++V LYD+ +Q+ A +TI+ ++ Q G LKGSL EEQ L
Sbjct: 18 GLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLEQSGALKGSLGAEEQLAL 77
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
ISG LRE +E + IQE VPE L++K Q++ +D +
Sbjct: 78 ISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNVVLSSSSSCLLPSKLFAG 137
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q +VAHPVNPPY +PLVE+VP T+ + RT +M +IG
Sbjct: 138 LVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMARTYALMRQIG 183
|
|
| UNIPROTKB|P14755 CRYL1 "Lambda-crystallin" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 70/166 (42%), Positives = 93/166 (56%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G++WAM+FAS G++V LYD+ QI A I+ ++ Q G LKGSLS EEQ L
Sbjct: 15 GLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
IS L E +E + IQE VPE L +K +++ +D +
Sbjct: 75 ISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IVAHPVNPPY+IPLVE+VP TS + RT +M +IG
Sbjct: 135 LAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIG 180
|
|
| RGD|631427 Cryl1 "crystallin, lambda 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 70/165 (42%), Positives = 97/165 (58%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FAS G+KV LYD+ +QI NA +I+ ++ Q G LKGSL E+Q L
Sbjct: 15 GLIGRSWAMLFASGGFKVKLYDIEQQQITNALESIRKEMKSLEQSGSLKGSLGAEQQLSL 74
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
ISG L E +E A+ IQE VPE L++K +++ +D +
Sbjct: 75 ISGCGNLAEAVEGAMHIQECVPENLELKKKIFAQLDRIVDDQVILSSSSSCLLPSKLFTG 134
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 287
H Q IVAHPVNPPY++PLVE+VP T+ + RT +M +I
Sbjct: 135 LAHVKQCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKI 179
|
|
| UNIPROTKB|E2R471 CRYL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 68/166 (40%), Positives = 97/166 (58%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG++WAM+FAS G+KV LYD+ +Q+ NA TI+ ++ Q G L+GSLS EEQ L
Sbjct: 83 GLIGRSWAMLFASGGFKVKLYDIEQQQVTNALETIRKEMKILEQSGSLRGSLSSEEQLSL 142
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
ISG ++ +E A IQE VPE L++K +++ +D +
Sbjct: 143 ISGCSNIQAAVEGAGHIQECVPENLELKKKIFAQLDQIVDDKVVLSSSTSCLLPSKLFAG 202
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q +V HPVNPPY++PLVE+VP T+ + RT +M +IG
Sbjct: 203 LAHVKQCLVVHPVNPPYYVPLVELVPHPETAPATMDRTYALMQKIG 248
|
|
| UNIPROTKB|F1NPU2 CRYL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 63/166 (37%), Positives = 95/166 (57%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG +WAM+FA+ G+KV LYD+ +Q+ A ++ +++ + G LKG+LS E+Q L
Sbjct: 17 GLIGCSWAMVFAAGGFKVKLYDIAQQQLTTALENVRKQMKELEESGFLKGTLSAEKQLAL 76
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEH 242
IS ++ +E A FIQE PE L++K +++ +D+ +
Sbjct: 77 ISVCTDMKAAVEGATFIQECTPENLELKKKIFSQLDLIVDDSVILSSSTSCLLPSKLFTG 136
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
H Q IV+HPVNPPYF+PLVEIVP T V +T +M ++G
Sbjct: 137 LKHVKQCIVSHPVNPPYFVPLVEIVPHPETDPSVTEKTYALMKKVG 182
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 290 | |||
| PRK06129 | 308 | PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas | 2e-50 | |
| pfam02737 | 180 | pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas | 4e-48 | |
| COG1250 | 307 | COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li | 4e-45 | |
| PRK06129 | 308 | PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas | 5e-45 | |
| PRK07531 | 495 | PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA | 5e-35 | |
| PRK07531 | 495 | PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA | 1e-33 | |
| pfam02737 | 180 | pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas | 2e-33 | |
| COG1250 | 307 | COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li | 9e-33 | |
| PRK07066 | 321 | PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge | 9e-24 | |
| PRK08269 | 314 | PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge | 1e-23 | |
| PRK06130 | 311 | PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge | 3e-23 | |
| PRK06130 | 311 | PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge | 1e-22 | |
| PRK07066 | 321 | PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge | 1e-21 | |
| PRK08269 | 314 | PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge | 2e-21 | |
| PRK09260 | 288 | PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge | 2e-21 | |
| PRK06035 | 291 | PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas | 2e-20 | |
| PRK08293 | 287 | PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge | 3e-20 | |
| PLN02545 | 295 | PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge | 5e-18 | |
| PRK08293 | 287 | PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge | 7e-16 | |
| PLN02545 | 295 | PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge | 4e-15 | |
| PRK09260 | 288 | PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge | 3e-14 | |
| PRK06035 | 291 | PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas | 5e-14 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 6e-13 | |
| PRK07530 | 292 | PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge | 5e-12 | |
| PRK07819 | 286 | PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge | 5e-12 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 2e-11 | |
| PRK05808 | 282 | PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge | 3e-11 | |
| PRK07819 | 286 | PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge | 1e-09 | |
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 1e-09 | |
| TIGR02279 | 503 | TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy | 4e-09 | |
| PRK05808 | 282 | PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge | 6e-09 | |
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 1e-08 | |
| PRK08268 | 507 | PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena | 2e-08 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 1e-07 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 2e-07 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 4e-07 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 3e-06 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 6e-06 | |
| TIGR02279 | 503 | TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy | 6e-05 | |
| PRK07530 | 292 | PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge | 5e-04 | |
| PRK08268 | 507 | PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena | 8e-04 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 0.003 |
| >gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 2e-50
Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GLIG+AWA++FA AG++V L+D A I L+D L G +P+
Sbjct: 11 GLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGE-APDAVLAR 69
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I T L + + DA ++QES PE L++K ++ +D + IL+SSTS+ L S +EH
Sbjct: 70 IRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEH 129
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
R + +VAHP+NPPY IP+VE+VPA WT+ + R + G
Sbjct: 130 LAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQS 177
|
Length = 308 |
| >gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 4e-48
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G A +FA AG +V L D+ E +E A+ I+ +L +KG + +
Sbjct: 8 GTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEE-DADAVLAR 66
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
IS T L + DA + E+VPE L +K +++ +D + IL+S+TSS + L+
Sbjct: 67 ISFTTDLAD-AVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELAAA 125
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
+ +FI H NPP +PLVE+V TS + + +IG
Sbjct: 126 TKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKT 173
|
This family also includes lambda crystallin. Length = 180 |
| >gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 4e-45
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G A +FA AGY V L D+ E +E A I+ L+ +KG L +
Sbjct: 12 GVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE-EADAALAR 70
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I+ T L L+DA + E+V E L++K QV+ ++ + IL+S+TSS + L+E
Sbjct: 71 ITPTTDL-AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA 129
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 289
+FI H NP +PLVE++ TS+ + R E +IG
Sbjct: 130 LKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGK 176
|
Length = 307 |
| >gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 5e-45
Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Query: 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH 60
T L + + DA ++QES PE L++K ++ +D + IL+SSTS+ L S +EH
Sbjct: 73 TDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAG 132
Query: 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 120
R + +VAHP+NPPY IP+VE+VPA WT+ + R + G PV L EI GF LNR
Sbjct: 133 RERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNR 192
Query: 121 IHG-LIGQAWAMI 132
+ G L+ +A+ ++
Sbjct: 193 LQGALLREAFRLV 205
|
Length = 308 |
| >gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-35
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK-GCLKGSLSPEEQFG 181
G+IG WA F AG V+++D E A+ I L + + L + P E G
Sbjct: 13 GVIGGGWAARFLLAGIDVAVFDPHPE----AERIIGEVLANAERAYAMLTDAPLPPE--G 66
Query: 182 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 241
++ L E + A +IQESVPE L +K +V ID + ++ SSTS FLPS L E
Sbjct: 67 RLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE 126
Query: 242 HSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
TH + VAHP NP Y +PLVE+V TS I R +EI+ EIGMK
Sbjct: 127 GMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMK 175
|
Length = 495 |
| >gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-33
Identities = 56/118 (47%), Positives = 71/118 (60%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 63
L E + A +IQESVPE L +K +V ID + ++ SSTS FLPS L E TH +
Sbjct: 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPER 133
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
VAHP NP Y +PLVE+V TS I R +EI+ EIGMKPV + EI F +R+
Sbjct: 134 LFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRL 191
|
Length = 495 |
| >gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-33
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
DA + E+VPE L +K +++ +D + IL+S+TSS + L+ + +FI
Sbjct: 76 AVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELAAATKRPERFIGL 135
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107
H NPP +PLVE+V TS + + +IG PV
Sbjct: 136 HFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPV 175
|
This family also includes lambda crystallin. Length = 180 |
| >gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 9e-33
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
L+DA + E+V E L++K QV+ ++ + IL+S+TSS + L+E +FI
Sbjct: 78 AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFI 137
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-HGL 124
H NP +PLVE++ TS+ + R E +IG PV + ++ GF +NR+ L
Sbjct: 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPV-VVKDVPGFIVNRLLAAL 196
Query: 125 IGQAWAMI 132
+ +A ++
Sbjct: 197 LNEAIRLL 204
|
Length = 307 |
| >gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 9e-24
Identities = 40/120 (33%), Positives = 65/120 (54%)
Query: 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR 61
+ C+ DA FIQES PE +K +++ I + I++SSTS LP+ +TH
Sbjct: 75 ATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHP 134
Query: 62 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ +V HP NP Y +PLVE++ T+ + I +GM+P+ + E+ GF +R+
Sbjct: 135 ERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRL 194
|
Length = 321 |
| >gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 1e-23
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
+ L DA + E+VPE+L K + R + + ++ I++S+TS+FL + L H H +F+
Sbjct: 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFL 134
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLI 125
AH +NP Y +PLVE+ P+ T V+ R ++ IG PV G+ + RI
Sbjct: 135 NAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPS-PGYIVPRI---- 189
Query: 126 GQAWAM 131
QA AM
Sbjct: 190 -QALAM 194
|
Length = 314 |
| >gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 3e-23
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 6/168 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G A +FA G +V L DV+ +E A+ I+ G G
Sbjct: 13 GTMGSGIAALFARKGLQVVLIDVMEGALERARGVIER------ALGVYAPLGIASAGMGR 66
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I L + A + E+VPE L++K V+ +D +TI +++TS + +++
Sbjct: 67 IRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQA 126
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
T +F+ H P IPLVE+V TS + + T ++ IG +
Sbjct: 127 VTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKR 174
|
Length = 311 |
| >gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-22
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 10 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 69
A + E+VPE L++K V+ +D +TI +++TS + +++ T +F+ H
Sbjct: 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHF 138
Query: 70 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-HGLIGQA 128
P IPLVE+V TS + + T ++ IG +PV + +I GF NRI H L +A
Sbjct: 139 FTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREA 198
Query: 129 WAMI 132
+++
Sbjct: 199 ISLL 202
|
Length = 311 |
| >gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-21
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 107 VTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYD-------VLSEQIENAKNTIQH 159
+ + T+I+ FA G+IG W + G V +D L + NA ++
Sbjct: 1 MAVITDIKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALE- 58
Query: 160 TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI 219
+ L+P + + C+ DA FIQES PE +K +++ I
Sbjct: 59 -----------RQGLAPGASPARLRFVATIEACVADADFIQESAPEREALKLELHERISR 107
Query: 220 FMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITR 279
+ I++SSTS LP+ +TH + +V HP NP Y +PLVE++ T+ +
Sbjct: 108 AAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDA 167
Query: 280 TREIMTEIGMK 290
I +GM+
Sbjct: 168 AMGIYRALGMR 178
|
Length = 321 |
| >gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-21
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLIS 184
+GQ A+ FA AG+ V+L D + + ++ +L+ G I
Sbjct: 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAE------IERTLAALVALGRID 54
Query: 185 GT---PVLR-----------ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230
VL + L DA + E+VPE+L K + R + + ++ I++S+
Sbjct: 55 AAQADAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIAST 114
Query: 231 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
TS+FL + L H H +F+ AH +NP Y +PLVE+ P+ T V+ R ++ IG
Sbjct: 115 TSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKV 174
|
Length = 314 |
| >gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-21
Identities = 41/169 (24%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G+ A +FA +G++ +L D+ EQ+E+A+ I + G +G L+ +
Sbjct: 10 GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQ----GVARGKLTEAARQAA 65
Query: 183 ISGTPV---LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
++ L+ + DA + E+VPE L++K V+ D + ++++TS+ P+ +
Sbjct: 66 LARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI 125
Query: 240 SEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ + + I H NP + + LVE++ TS+ + +E+ ++G
Sbjct: 126 ASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMG 174
|
Length = 288 |
| >gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 2e-20
Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 9/171 (5%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ---HTLQDYHQKGCLKGSLSPEEQ 179
G++GQ A +FA GY V++ DV E ++NA I+ + L++ +KG +S +E
Sbjct: 12 GVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKG----KMSEDEA 67
Query: 180 FGLIS--GTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 237
+++ T E L DA FI E+VPE L +K +V+ ++ +S TI++S+TS + +
Sbjct: 68 KAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA 127
Query: 238 VLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
++ + +FI H NP + L+E+V AA TSE T E+ +IG
Sbjct: 128 EIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIG 178
|
Length = 291 |
| >gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-20
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G A A G+ V++YD+ E +E AK I Y + E
Sbjct: 12 GVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I+ T L E ++DA + E+VPE +IK Y + TI ++++S+ LPS +E
Sbjct: 72 ITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEA 131
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 289
+ +F+ H N + EI+ T V IGM
Sbjct: 132 TGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGM 178
|
Length = 287 |
| >gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 5e-18
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 8/169 (4%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---Q 179
G +G A + A+AG V L D + ++I +L + KG +S EE
Sbjct: 13 GQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLA----RLVKKGKMSQEEADAT 68
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
G I T L E L DA FI E++ E +K +++ +D + IL+S+TSS + L
Sbjct: 69 LGRIRCTTNLEE-LRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRL 127
Query: 240 SEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ + Q I H +NPP + LVEI+ A TS+ V T+ + G
Sbjct: 128 ASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFG 176
|
Length = 295 |
| >gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-16
Identities = 35/119 (29%), Positives = 54/119 (45%)
Query: 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH 60
T L E ++DA + E+VPE +IK Y + TI ++++S+ LPS +E +
Sbjct: 75 TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGR 134
Query: 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN 119
+F+ H N + EI+ T V IGM P+ L E G+ LN
Sbjct: 135 PEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILN 193
|
Length = 287 |
| >gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 4e-15
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 5 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 64
E L DA FI E++ E +K +++ +D + IL+S+TSS + L+ + Q
Sbjct: 78 LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQV 137
Query: 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
I H +NPP + LVEI+ A TS+ V T+ + G K V + + GF +NRI
Sbjct: 138 IGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFG-KTVVCSQDYPGFIVNRI 193
|
Length = 295 |
| >gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-14
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 63
L+ + DA + E+VPE L++K V+ D + ++++TS+ P+ ++ + +
Sbjct: 75 LKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPER 134
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHG 123
I H NP + + LVE++ TS+ + +E+ ++G K + E GF +RI
Sbjct: 135 VIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMG-KETVVVNEFPGFVTSRISA 193
Query: 124 LIG 126
L+G
Sbjct: 194 LVG 196
|
Length = 288 |
| >gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 5e-14
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
E L DA FI E+VPE L +K +V+ ++ +S TI++S+TS + + ++ + +FI
Sbjct: 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFI 140
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 120
H NP + L+E+V AA TSE T E+ +IG P+ + ++ GF R
Sbjct: 141 GMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTR 194
|
Length = 291 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 6e-13
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 123 GLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE--- 178
GL+G A + A+ AG V + D+ + I NA +++ KG + ++P E
Sbjct: 313 GLMGGGIASVTATKAGIPVRIKDINPQGINNA---LKYAW-KLLDKGVKRRHMTPAERDN 368
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 238
Q LI+GT R +D + E+V E L +KHQ+ + I+ +++TI +S+TSS
Sbjct: 369 QMALITGTTDYRG-FKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ 427
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
++ ++ I H +P +PLVE++P A TSE+ I T
Sbjct: 428 IAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATT 469
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 10/170 (5%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
G +G A + A AGY V L DV ++++E TI L + KG +S E +
Sbjct: 13 GQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNL----ARQVAKGKISEEARAAA 68
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
IS L + L D + E+ E +K +++ + + IL+++TSS + L
Sbjct: 69 LARISTATDLED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRL 127
Query: 240 SEHSTHRSQ-FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ +T R + FI H +NP + LVE++ T E +E +T++G
Sbjct: 128 AS-ATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLG 176
|
Length = 292 |
| >gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
G +G A + A AG V +++ E +N I+ +L+ + +G L+ E+
Sbjct: 14 GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLE----RAVSRGKLTERERDAA 69
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSSSTSSFLPSV 238
+ T L + D + E+V E +K +++ +D + + +L+S+TSS +P +
Sbjct: 70 LARLRFTTDLGD-FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS-IPIM 127
Query: 239 LSEHSTHRSQFIVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 287
+T R ++ H NP +PLVE+VP TSE + R E +++
Sbjct: 128 KLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDV 177
|
Length = 286 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
+D + E+V E L +KHQ+ + I+ +++TI +S+TSS ++ ++ I
Sbjct: 382 FKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGL 441
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H +P +PLVE++P A TSE+ I T + + G P+ + + GF +NRI
Sbjct: 442 HYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKA-GFYVNRI 494
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 10/170 (5%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
G +G A + A AGY V + D+ ++ TI +L + KG ++ ++
Sbjct: 12 GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLD----RLVKKGKMTEADKEAA 67
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
I+GT L + L+DA + E+ E + +K +++ +D IL+++TSS L
Sbjct: 68 LARITGTTDL-DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITE 125
Query: 240 SEHSTHR-SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+T R + I H NP + LVEI+ TS+ + +IG
Sbjct: 126 LAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIG 175
|
Length = 282 |
| >gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIV 66
D + E+V E +K +++ +D + + +L+S+TSS +P + +T R ++
Sbjct: 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS-IPIMKLAAATKRPGRVL 140
Query: 67 A-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN 119
H NP +PLVE+VP TSE + R E +++ K V + GF +N
Sbjct: 141 GLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFVVN 194
|
Length = 286 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 11/163 (6%)
Query: 123 GLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE--- 178
GL+G A + A+ AG V + D+ + I +A L K + L P E
Sbjct: 318 GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLD----KKVKRRHLKPSERDK 373
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-S 237
Q LISGT R + A + E+V E L +K Q+ ++ + +TI +S+TSS LP
Sbjct: 374 QMALISGTTDYRG-FKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS-LPIG 431
Query: 238 VLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
++ + Q I H +P +PLVE++P A TS I T
Sbjct: 432 QIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATT 474
|
Length = 708 |
| >gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 4e-09
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G +G A + ASAG++V LYD+ +E + A I+ L KG L E + L
Sbjct: 14 GAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE---ECERTL 70
Query: 183 ISGTPVLR-ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 241
PV L DA + E++ E L++K ++ ++ ++TI++S+TSS + ++
Sbjct: 71 KRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA 130
Query: 242 HSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVI 277
+ H NP + LVE+V T+ V
Sbjct: 131 GLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVA 166
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503 |
| >gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-09
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR-SQF 64
+ L+DA + E+ E + +K +++ +D IL+++TSS L +T R +
Sbjct: 78 DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITELAAATKRPDKV 136
Query: 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
I H NP + LVEI+ TS+ + +IG PV + GF +NRI
Sbjct: 137 IGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV-KNAPGFVVNRI 192
|
Length = 282 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 16 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIVAHPVNPPY 74
E+V E L +K Q+ ++ + +TI +S+TSS LP ++ + Q I H +P
Sbjct: 395 EAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS-LPIGQIAAAAARPEQVIGLHYFSPVE 453
Query: 75 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+PLVE++P A TS I T + + G P+ + GF +NRI
Sbjct: 454 KMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGA-GFYVNRI 499
|
Length = 708 |
| >gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE-QFG 181
G +G A + A AG+ V LYD + A++ I L K KG L+ E+
Sbjct: 16 GAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARL----AKLVEKGKLTAEQADAA 71
Query: 182 LISGTPV--LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
L PV L + L D + E++ E L +K ++ ++ +S + IL+++TSS S+
Sbjct: 72 LARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSL--SIT 128
Query: 240 SEHSTHRSQFIVA--HPVNPPYFIPLVEIVPAAWTSERVITR 279
+ + + VA H NP + LVE+V T V
Sbjct: 129 AIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADA 170
|
Length = 507 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 14 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP 73
+ E+V E ++K V ++ + + IL+S+TS+ S+L++ F H NP
Sbjct: 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPV 455
Query: 74 YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
+ +PLVE++ +S+ I +++G P+ + + GF +NR+
Sbjct: 456 HRMPLVEVIRGEKSSDETIATVVAYASKMGKTPI-VVNDCPGFFVNRV 502
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G A AS G + + D+ ++ L K +G ++P + G+
Sbjct: 322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLN----KQVERGRITPAKMAGV 377
Query: 183 ISG-TPVLREC-LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS 240
++G TP L ++ + E+V E ++K V ++ + + IL+S+TS+ S+L+
Sbjct: 378 LNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLA 437
Query: 241 EHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
+ F H NP + +PLVE++ +S+ I
Sbjct: 438 KALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATV 477
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 4e-07
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 171 KGSLSPEEQFGLISG-TPVLR-ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228
+G + + G++S P L E + E+V E ++K V ++ + +TIL+
Sbjct: 366 RGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILA 425
Query: 229 SSTSSFLPSVLSEHSTHRSQ-FIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
S+TS+ S+L++ + R + F H NP + +PLVE++ TS+ I
Sbjct: 426 SNTSTISISLLAK-ALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATV 477
|
Length = 715 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ-FIV 66
E + E+V E ++K V ++ + +TIL+S+TS+ S+L++ + R + F
Sbjct: 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK-ALKRPENFCG 448
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + +PLVE++ TS+ I +++G P+ + + GF +NR+
Sbjct: 449 MHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPI-VVNDCPGFFVNRV 502
|
Length = 715 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G A + G K L D ++ + + L ++ + SL +
Sbjct: 344 GLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKIT-SLERDSILSN 402
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
++ T + ++A + E+V E L +KH+V + ++ + + I++S+TS+ ++
Sbjct: 403 LTPT-LDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAV 461
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVI 277
S+ + I H +P + L+EI+ TS+ +
Sbjct: 462 SSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTL 496
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
L DA + E++ E L++K ++ ++ ++TI++S+TSS + ++ +
Sbjct: 80 HALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVA 139
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + LVE+V T+ V + E G +PV GF +NR+
Sbjct: 140 GLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVH-CHSTPGFIVNRV 194
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503 |
| >gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ-FIV 66
L D + E+ E +K +++ + + IL+++TSS + L+ +T R + FI
Sbjct: 81 LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS-ATDRPERFIG 139
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H +NP + LVE++ T E +E +T++G K +T+ + F +NRI
Sbjct: 140 IHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLG-KTITVAEDFPAFIVNRI 193
|
Length = 292 |
| >gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
L D + E++ E L +K ++ ++ +S + IL+++TSS S+ + + + VA
Sbjct: 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSL--SITAIAAALKHPERVA 141
Query: 68 --HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + LVE+V T V + G PV + GF +NR
Sbjct: 142 GLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPV-RAKDTPGFIVNRA 196
|
Length = 507 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
++A + E+V E L +KH+V + ++ + + I++S+TS+ ++ S+ + I
Sbjct: 412 FKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGM 471
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHG 123
H +P + L+EI+ TS+ + + + G K V + + GF R G
Sbjct: 472 HYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQG-KVVIVVKDGPGFYTTRCLG 526
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 100.0 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 100.0 | |
| KOG2304|consensus | 298 | 100.0 | ||
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 100.0 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 100.0 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 100.0 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| KOG2304|consensus | 298 | 100.0 | ||
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.98 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.97 | |
| KOG2305|consensus | 313 | 99.97 | ||
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.97 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.97 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.97 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.97 | |
| KOG1683|consensus | 380 | 99.96 | ||
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.96 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.96 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.96 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.96 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.95 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.95 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.95 | |
| KOG2305|consensus | 313 | 99.94 | ||
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.94 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.94 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.94 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.93 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.92 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.9 | |
| KOG1683|consensus | 380 | 99.88 | ||
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.54 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.37 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.36 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.34 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.31 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.25 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.24 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.23 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.2 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.2 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.19 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.19 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.19 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.15 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.14 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.12 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.12 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.11 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.07 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.02 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.01 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 98.97 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 98.97 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.96 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.96 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.9 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.9 | |
| KOG0409|consensus | 327 | 98.85 | ||
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.8 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.77 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.72 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.7 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.7 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.68 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 98.66 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.65 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.65 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.65 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.63 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.63 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.62 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.61 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.59 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 98.57 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.57 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.55 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.52 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 98.48 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.47 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.44 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.44 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.42 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.42 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 98.41 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 98.41 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.4 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.4 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.39 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.34 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.32 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.3 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.29 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.27 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.26 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.26 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 98.25 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.24 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.23 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.17 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.16 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.15 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.14 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.1 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 98.07 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.05 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.02 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.95 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.94 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 97.94 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.94 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.91 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.9 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.9 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.9 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.9 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.89 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.79 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.79 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 97.78 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.66 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.63 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.62 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.62 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 97.6 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.59 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 97.59 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.59 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.59 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.58 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.41 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.41 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 97.4 | |
| PLN02256 | 304 | arogenate dehydrogenase | 97.38 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 97.37 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.33 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.32 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.27 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.26 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.25 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.24 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 97.15 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.12 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 97.08 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.06 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.02 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.97 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.92 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 96.88 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.85 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 96.77 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 96.73 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.72 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 96.71 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 96.67 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 96.65 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.63 | |
| KOG2711|consensus | 372 | 96.6 | ||
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.49 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.47 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.46 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 96.39 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.39 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.39 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.38 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.37 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 96.34 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 96.26 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 96.24 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.22 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.12 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 96.0 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.95 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.86 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 95.86 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 95.81 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 95.67 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 95.65 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 95.63 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.61 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 95.6 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.5 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.5 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 95.49 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 95.49 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.48 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.46 | |
| PLN02494 | 477 | adenosylhomocysteinase | 95.44 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.34 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 95.33 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 95.3 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 95.21 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.16 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 95.15 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.1 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.08 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.07 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 95.02 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.01 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 94.83 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 94.78 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 94.76 | |
| PLN00106 | 323 | malate dehydrogenase | 94.68 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 94.63 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 94.6 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 94.56 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 94.53 | |
| KOG2380|consensus | 480 | 94.48 | ||
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.28 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.2 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 94.16 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 94.13 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 94.09 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 94.06 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 94.04 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 93.95 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 93.86 | |
| PLN02602 | 350 | lactate dehydrogenase | 93.79 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 93.77 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 93.76 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 93.74 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 93.67 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 93.62 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.55 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.54 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.48 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 93.31 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.04 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.96 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 92.96 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 92.89 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 92.87 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 92.86 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 92.8 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 92.74 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 92.7 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 92.66 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 92.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 92.59 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.51 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.45 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.34 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.07 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.94 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.94 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.89 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 91.87 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 91.86 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 91.79 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 91.68 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 91.64 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.64 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 91.48 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 91.33 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 91.32 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 91.3 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 91.29 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 91.28 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 91.23 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.2 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.06 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 91.0 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.95 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.85 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 90.81 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 90.26 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 90.21 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 90.13 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 89.92 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.87 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 89.76 | |
| KOG0069|consensus | 336 | 89.55 | ||
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.47 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 89.44 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 89.38 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 89.33 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 89.24 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 89.18 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.15 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 89.12 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 89.07 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 89.06 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 89.03 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 89.0 | |
| KOG3124|consensus | 267 | 88.97 | ||
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 88.94 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 88.92 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 88.85 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 88.79 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 88.69 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 88.46 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 88.41 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.39 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 88.15 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 88.03 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 88.03 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 87.85 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.77 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 87.75 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 87.74 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 87.58 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 87.13 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.07 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 86.8 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 86.66 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 86.49 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.24 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 86.22 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.19 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 86.16 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 86.12 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 86.02 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 86.01 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 85.74 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.41 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 85.35 | |
| KOG0068|consensus | 406 | 85.27 | ||
| cd06533 | 171 | Glyco_transf_WecG_TagA The glycosyltransferase Wec | 85.26 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 85.1 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 84.81 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 84.71 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 84.63 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 84.47 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 84.26 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 84.26 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.13 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 83.97 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 83.93 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 83.78 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 83.68 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 83.36 | |
| PRK03692 | 243 | putative UDP-N-acetyl-D-mannosaminuronic acid tran | 83.12 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 83.1 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 82.9 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 82.86 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 82.83 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 82.46 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 82.06 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 82.02 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 81.91 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 81.82 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 81.6 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 81.59 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 81.55 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 81.35 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 81.14 | |
| PLN00135 | 309 | malate dehydrogenase | 81.13 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 81.11 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 80.8 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 80.67 | |
| KOG1014|consensus | 312 | 80.44 |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=342.22 Aligned_cols=280 Identities=15% Similarity=0.134 Sum_probs=205.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|++ ++++||+|||||+|++++|+.+|+++++.|++++|++||||++++++|++.+.+|+|++|+|||||++.|+|+||
T Consensus 79 ~~~~-~~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEv 157 (507)
T PRK08268 79 EALA-DLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEV 157 (507)
T ss_pred CCHH-HhCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEE
Confidence 5675 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH-----
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT----- 156 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~----- 156 (290)
++|..|++++++.+..+++++||.|+.+ +|+|||++||++..+..+...++.+.| .+++++++++..
T Consensus 158 v~g~~Ts~~~~~~~~~l~~~lgk~pv~v-~d~pGfi~Nrll~~~~~Ea~~l~~~g~-------~~~~~iD~al~~~~G~~ 229 (507)
T PRK08268 158 VSGLATDPAVADALYALARAWGKTPVRA-KDTPGFIVNRAARPYYTEALRVLEEGV-------ADPATIDAILREAAGFR 229 (507)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceEEe-cCCCChHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999 799999999999888888666655554 567777777642
Q ss_pred -----------HH---HHHHHHHHcCCCCCCCChhhhhcc---------------cccCCchHhhcccCcE--EEE----
Q psy17416 157 -----------IQ---HTLQDYHQKGCLKGSLSPEEQFGL---------------ISGTPVLRECLEDAIF--IQE---- 201 (290)
Q Consensus 157 -----------i~---~~~~~~~~~g~~~~~~~~~~~~~~---------------i~~~~~l~~~l~~aDl--Vie---- 201 (290)
+. +....+...........+...+.. ..+...-...-.+.+. +..
T Consensus 230 mGPf~l~D~~Gldv~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~ 309 (507)
T PRK08268 230 MGPFELMDLIGLDVNHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWV 309 (507)
T ss_pred cCHHHHHHHhchHHHHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccc
Confidence 00 000011110000000100000000 1110000000000000 000
Q ss_pred --ccccchHHHHHHHHHH-------hhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCC
Q psy17416 202 --SVPEILQIKHQVYRAI-------DIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWT 272 (290)
Q Consensus 202 --avpe~~~~k~~~~~~l-------~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t 272 (290)
..+........++.+. ...+.++++++++.++.+.+..+....+|+|++|+|||+|++.++++||+++++|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~T 389 (507)
T PRK08268 310 SADVEGDLAALARLLERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPAT 389 (507)
T ss_pred cccccchhHHHHHHHHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCC
Confidence 0011111112222111 2356788889888888888888877788999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q psy17416 273 SERVITRTREIMTEIGMK 290 (290)
Q Consensus 273 ~~e~~~~~~~~~~~lgk~ 290 (290)
++++++++.+|++.+||+
T Consensus 390 s~e~~~~~~~~~~~~gk~ 407 (507)
T PRK08268 390 SPAARDAAHALFQQDGKA 407 (507)
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 999999999999999995
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=315.64 Aligned_cols=146 Identities=30% Similarity=0.444 Sum_probs=137.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||+||+++|+++|++++++++||||||||||+|||++|++.++||+||+||||||||++|+|||
T Consensus 74 ~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVE 152 (307)
T COG1250 74 TTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVE 152 (307)
T ss_pred cCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEE
Confidence 35666 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|.+|++++++.+.+|++++||+|+++ +|+|||++||++..+.+++..++..+. .+++.+|+++.
T Consensus 153 vI~g~~T~~e~~~~~~~~~~~igK~~vv~-~D~pGFi~NRil~~~~~eA~~l~~eGv-------a~~e~ID~~~~ 219 (307)
T COG1250 153 VIRGEKTSDETVERVVEFAKKIGKTPVVV-KDVPGFIVNRLLAALLNEAIRLLEEGV-------ATPEEIDAAMR 219 (307)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCEee-cCCCceehHhHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999765 899999999999999999777776653 78999999887
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=285.24 Aligned_cols=147 Identities=24% Similarity=0.340 Sum_probs=141.7
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+.++++|||+||||+.||+++|+++|++|++.|+++||++|||||+.+++++..+++|+||.|+|||||+|.|.|||
T Consensus 87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvE 166 (298)
T KOG2304|consen 87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVE 166 (298)
T ss_pred cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+++.||++++.....|++++||+||.+ +|+||||+||++-+|..+...++.++ |.+.|++|.|++
T Consensus 167 Vir~~~TS~eTf~~l~~f~k~~gKttVac-kDtpGFIVNRlLiPyl~ea~r~yerG-------dAskeDIDtaMk 233 (298)
T KOG2304|consen 167 VIRTDDTSDETFNALVDFGKAVGKTTVAC-KDTPGFIVNRLLIPYLMEAIRMYERG-------DASKEDIDTAMK 233 (298)
T ss_pred hhcCCCCCHHHHHHHHHHHHHhCCCceee-cCCCchhhhHHHHHHHHHHHHHHHhc-------CCcHhhHHHHHh
Confidence 99999999999999999999999999988 89999999999999999988887764 689999999998
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=302.61 Aligned_cols=148 Identities=28% Similarity=0.496 Sum_probs=140.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+|||||||++++|+++|+++++.|+++|||+||||++++++|++.+++|+||+|+||||||++|||||
T Consensus 74 ~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVE 153 (321)
T PRK07066 74 VATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVE 153 (321)
T ss_pred cCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|++|++|++++++.+.+|++++||+||++++|+|||++||++..+.+++..++.++. .+++++|++++
T Consensus 154 Vv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGv-------as~edID~a~~ 221 (321)
T PRK07066 154 VLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGV-------ATTGEIDDAIR 221 (321)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 999999999999999999999999999998899999999999999999766666543 68999999876
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=270.60 Aligned_cols=167 Identities=35% Similarity=0.559 Sum_probs=145.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||++||.+++..|++|.+||++++.++++.+++++.++.++++|.+... .....++++++++|++++. +||+|||
T Consensus 7 aG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~dl~~~~-~adlViE 84 (180)
T PF02737_consen 7 AGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQE-EADAALARISFTTDLEEAV-DADLVIE 84 (180)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHH-HHHHHHHTEEEESSGGGGC-TESEEEE
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhh-hhhhhhhhcccccCHHHHh-hhheehh
Confidence 6999999999999999999999999999999999999999999998877642 3566789999999999876 9999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+||+|+|||+|++.+|+|||+++++|++++++++.
T Consensus 85 ai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~ 164 (180)
T PF02737_consen 85 AIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETVDRVR 164 (180)
T ss_dssp -S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 165 ~~~~~~gk~ 173 (180)
T PF02737_consen 165 ALLRSLGKT 173 (180)
T ss_dssp HHHHHTT-E
T ss_pred HHHHHCCCE
Confidence 999999984
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=284.66 Aligned_cols=167 Identities=33% Similarity=0.478 Sum_probs=160.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||++||+.++..|++|+++|++++.+++++..+.+.+++++++|.++.. .....+++|+.++++. ++++||+|||
T Consensus 11 aG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~-~~~~~l~~i~~~~~~~-~l~~~DlVIE 88 (307)
T COG1250 11 AGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE-EADAALARITPTTDLA-ALKDADLVIE 88 (307)
T ss_pred ccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHhhccccCchh-HhccCCEEEE
Confidence 7999999999999988999999999999999999999999999999888763 4677899999999998 6999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|++|++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||+++|+||||++|..|++++++++.
T Consensus 89 Av~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~ 168 (307)
T COG1250 89 AVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVV 168 (307)
T ss_pred eccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|.+.+||+
T Consensus 169 ~~~~~igK~ 177 (307)
T COG1250 169 EFAKKIGKT 177 (307)
T ss_pred HHHHHcCCC
Confidence 999999985
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=314.36 Aligned_cols=145 Identities=21% Similarity=0.312 Sum_probs=135.7
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+ +++++||+|||||+|++++|+++|++|+++|+||||||||||+||+++|++.+++|+||+|||||||++.|||||
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvE 462 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEe
Confidence 3567 478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.||+++++.+.+|++++||+||+| +|+|||++||++..+.+++..++. .| .+++++|+++.
T Consensus 463 vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~NRl~~~~~~ea~~l~~-eG-------~~~~~ID~a~~ 528 (714)
T TIGR02437 463 VIRGEKSSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFGGFSKLLR-DG-------ADFVRIDKVME 528 (714)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCEEEEe-CCcccchHHHHHHHHHHHHHHHHH-CC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999999998666554 45 57899998875
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=313.25 Aligned_cols=145 Identities=20% Similarity=0.257 Sum_probs=136.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||+||+++|+++|++|+++|+|+|||+||||+||+++|++.+++|+||+|+|||||++.|+|||
T Consensus 406 ~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvE 484 (737)
T TIGR02441 406 TLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484 (737)
T ss_pred eCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEE
Confidence 46775 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.||+++++.+.+|++++||+||++ +|+|||++||++..+.+++..++.+ | .+++++|+++.
T Consensus 485 vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~~~~~~ea~~lv~e-G-------v~~~~ID~a~~ 550 (737)
T TIGR02441 485 IITHDGTSKDTLASAVAVGLKQGKVVIVV-KDGPGFYTTRCLGPMLAEVIRLLQE-G-------VDPKKLDKLTT 550 (737)
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCeEEEE-CCcCCchHHHHHHHHHHHHHHHHHc-C-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999999999997766654 5 57999998854
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=310.19 Aligned_cols=145 Identities=24% Similarity=0.312 Sum_probs=135.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+ +++++||+|||||+|++++|+++|++|+++|+|||||+||||+||+++|++.+++|+||+|+|||||++.|++||
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVE 462 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEE
Confidence 4677 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.||+++++.+.+|++++||+||+| +|+|||++||++..+.++...++. .| .+++++|+++.
T Consensus 463 vv~g~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~~~~~ea~~lv~-~G-------a~~e~ID~a~~ 528 (715)
T PRK11730 463 VIRGEKTSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFAGFSQLLR-DG-------ADFRQIDKVME 528 (715)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCceEEe-cCcCchhHHHHHHHHHHHHHHHHH-cC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999999888655554 44 57888888875
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=305.70 Aligned_cols=145 Identities=30% Similarity=0.371 Sum_probs=136.2
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||+|++++|+++|++|+++|++||||+||||++|+++|++.+.+|+||+|+|||||++.||+||
T Consensus 376 ~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVE 454 (699)
T TIGR02440 376 TTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVE 454 (699)
T ss_pred eCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEE
Confidence 46775 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.|++++++.+.+|++++||+||++ +|+|||++||++..+.++...++. .| .+++++|+++.
T Consensus 455 vv~g~~T~~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~Ea~~l~~-~G-------~~~~dID~a~~ 520 (699)
T TIGR02440 455 VIPHAGTSEQTIATTVALAKKQGKTPIVV-ADKAGFYVNRILAPYMNEAARLLL-EG-------EPVEHIDKALV 520 (699)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEE-ccccchHHHHHHHHHHHHHHHHHH-CC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999999999766665 45 47899998874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=290.96 Aligned_cols=146 Identities=22% Similarity=0.274 Sum_probs=135.9
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||+|++++|+++|+++++.|++++||+||||++++++|++.+.+|+|++|+|||||++.|+|+|
T Consensus 76 ~~~~~-~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvE 154 (503)
T TIGR02279 76 VTDLH-ALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVE 154 (503)
T ss_pred eCCHH-HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEE
Confidence 35775 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|++|++|++++++.+..+++++||.|+.+ +|+|||++||++..+.++...++.+.| .++++++++++
T Consensus 155 vv~g~~Ts~e~~~~~~~l~~~lgk~pv~v-~d~pGfi~Nrl~~~~~~EA~~l~e~g~-------a~~~~ID~al~ 221 (503)
T TIGR02279 155 VVSGLATAAEVAEQLYETALAWGKQPVHC-HSTPGFIVNRVARPYYAEALRALEEQV-------AAPAVLDAALR 221 (503)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeeeEe-CCCCCcHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999988888766666554 67888888875
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=269.95 Aligned_cols=168 Identities=26% Similarity=0.444 Sum_probs=156.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.+||..++..|++|.+||++++.++++.+++++.++.+.+.|.. .....++|+++++++++++
T Consensus 11 aVIG---aG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~~~l~~av~ 82 (321)
T PRK07066 11 AAIG---SGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLA-----PGASPARLRFVATIEACVA 82 (321)
T ss_pred EEEC---cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----hhhHHhhceecCCHHHHhc
Confidence 4554 7999999999999999999999999999999999999999888876633 2345578999999999999
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||||+||++++|+.+|+++++.+++++||+||||+++++++++.+.+|+||+|+||||||+++|+|||++|++|++
T Consensus 83 ~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~ 162 (321)
T PRK07066 83 DADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAP 162 (321)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+||+
T Consensus 163 e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 163 EAVDAAMGIYRALGMR 178 (321)
T ss_pred HHHHHHHHHHHHcCCE
Confidence 9999999999999984
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=304.60 Aligned_cols=145 Identities=28% Similarity=0.315 Sum_probs=136.1
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+ +++++||+|||||+|++++|+++|++|+++|+|||||+||||+||+++|++.+++|+||+|+|||||++.||+||
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVE 459 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVE 459 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEE
Confidence 4677 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|++||+++++.+.+|++++||.|+++ +|+|||++||++..+.++...++.+ | .+++++|.++.
T Consensus 460 vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~EA~~lv~e-G-------v~~~dID~a~~ 525 (708)
T PRK11154 460 VIPHAKTSAETIATTVALAKKQGKTPIVV-RDGAGFYVNRILAPYINEAARLLLE-G-------EPIEHIDAALV 525 (708)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHHHHHHHHHHHHHc-C-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 7999999999999999997766554 5 36899998875
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=253.73 Aligned_cols=111 Identities=35% Similarity=0.575 Sum_probs=95.5
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++++. +||+||||++|++++|+++|++|+++|+|||||+||||++++++|++.+++|+||+|||||||++.+|+||
T Consensus 70 ~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVE 148 (180)
T PF02737_consen 70 TTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVE 148 (180)
T ss_dssp ESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEE
T ss_pred ccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEE
Confidence 47899877 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
|+++++|++++++.+.+|++++||.|+.+ +|+
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~gk~pv~v-~D~ 180 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLGKTPVVV-KDT 180 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-EEEEE-ES-
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCEEEEe-cCC
Confidence 99999999999999999999999999999 774
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=266.69 Aligned_cols=145 Identities=31% Similarity=0.492 Sum_probs=137.0
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEe
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIV 82 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv 82 (290)
|+++++++||+|||||+|++++|+++|++|++.++|+|||+||||++++++|++.+++|+|++|+||||||+.||+|||+
T Consensus 72 ~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv 151 (314)
T PRK08269 72 GAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVS 151 (314)
T ss_pred chHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEe
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 83 PAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 83 ~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|+.|++++++.+..++.++||.|+.+ +|.|||++||++..+..+...++.+.| .+++++++++.
T Consensus 152 ~g~~t~~e~~~~~~~ll~~lGk~~v~v-~d~~Gfi~nri~~~~l~EAl~l~e~g~-------~~~e~iD~a~~ 216 (314)
T PRK08269 152 PSDATDPAVVDRLAALLERIGKVPVVC-GPSPGYIVPRIQALAMNEAARMVEEGV-------ASAEDIDKAIR 216 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEe-cCCCCcchHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 999999999999999999999999999 799999999999988888766666654 78999998876
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=262.19 Aligned_cols=146 Identities=26% Similarity=0.353 Sum_probs=136.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhc-CCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFM-SSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLV 79 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~-~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lv 79 (290)
++|+ +++++||+|||||+|++++|+++|+++++.| ++++|++||||++|+++++..+.+|+|++|+|||||++.++++
T Consensus 76 ~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv 154 (286)
T PRK07819 76 TTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV 154 (286)
T ss_pred eCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE
Confidence 4678 5689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eEeeCCCCCHHHHHHHHHHHH-HhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 80 EIVPAAWTSERVITRTREIMT-EIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 80 Eiv~~~~t~~~~~~~~~~~~~-~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+++..|++++++.+..|+. .+||.|+.+ +|.|||++||++..+.++.+.++.+ |. .+++++|.++.
T Consensus 155 Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~nRi~~~~~~Ea~~ll~e-Gv------~~~~dID~~~~ 223 (286)
T PRK07819 155 ELVPTLVTSEATVARAEEFASDVLGKQVVRA-QDRSGFVVNALLVPYLLSAIRMVES-GF------ATAEDIDKAMV 223 (286)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCCCCceEe-cCCCChHHHHHHHHHHHHHHHHHHh-CC------CCHHHHHHHHH
Confidence 999999999999999999998 599999999 8999999999999999998776655 42 57999998875
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=284.41 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=159.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.+||+.++..|++|+++|++++.++++++++++.+++++++|.++.. ..+..+++|+++++++ ++++||+|||
T Consensus 321 aG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViE 398 (714)
T TIGR02437 321 AGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPA-KMAGVLNGITPTLSYA-GFDNVDIVVE 398 (714)
T ss_pred CchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hHHHHHhCeEEeCCHH-HhcCCCEEEE
Confidence 5999999999999999999999999999999999999999999999888763 4566789999999996 5899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.||||||++|++|++++++++.
T Consensus 399 av~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~ 478 (714)
T TIGR02437 399 AVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVV 478 (714)
T ss_pred cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 479 ~~~~~lgk~ 487 (714)
T TIGR02437 479 AYASKMGKT 487 (714)
T ss_pred HHHHHcCCE
Confidence 999999995
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=281.93 Aligned_cols=167 Identities=23% Similarity=0.286 Sum_probs=159.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.+||+.++..|++|+++|++++.++++.+++++.+++++++|.++.. .....+++|+++++++ ++++||+|||
T Consensus 321 aG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViE 398 (715)
T PRK11730 321 AGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGA-KMAGVLSSIRPTLDYA-GFERVDVVVE 398 (715)
T ss_pred CchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hHHHHHhCeEEeCCHH-HhcCCCEEEe
Confidence 6999999999999999999999999999999999999999999999988663 4667789999999996 5899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.||+|||++|+.|++++++++.
T Consensus 399 av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~ 478 (715)
T PRK11730 399 AVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVV 478 (715)
T ss_pred cccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 479 ~~~~~lgk~ 487 (715)
T PRK11730 479 AYASKMGKT 487 (715)
T ss_pred HHHHHhCCc
Confidence 999999995
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=246.02 Aligned_cols=169 Identities=24% Similarity=0.348 Sum_probs=161.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh----hhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP----EEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~----~~~~~~i~~~~~l~~~l~~aD 197 (290)
+|.||..||+..+..|++|.++|.+...+++|.+.|.+.+.+..+++..+.+... +..+++|..+++.+++++++|
T Consensus 19 aG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dad 98 (298)
T KOG2304|consen 19 AGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDAD 98 (298)
T ss_pred ccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhH
Confidence 7999999999999999999999999999999999999999999998888876532 456899999999999999999
Q ss_pred EEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHH
Q psy17416 198 FIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVI 277 (290)
Q Consensus 198 lVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~ 277 (290)
+||||+.||+++|+.+|++|+..+++++|++|||||+.++.++..+.+|.||.|+|||||++.|+||||++++.|++++.
T Consensus 99 liiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf 178 (298)
T KOG2304|consen 99 LIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETF 178 (298)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q psy17416 278 TRTREIMTEIGMK 290 (290)
Q Consensus 278 ~~~~~~~~~lgk~ 290 (290)
..+..|.+.+||+
T Consensus 179 ~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 179 NALVDFGKAVGKT 191 (298)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999995
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=283.08 Aligned_cols=217 Identities=17% Similarity=0.249 Sum_probs=182.3
Q ss_pred CCCCCCCCeeeEeeCCCC-C-HHHHHHHHHHHHHhCCccEEEeccc----------------eeeEEecc----cchhHH
Q psy17416 70 VNPPYFIPLVEIVPAAWT-S-ERVITRTREIMTEIGMKPVTLTTEI----------------RGFALNRI----HGLIGQ 127 (290)
Q Consensus 70 ~~P~~~~~lvEiv~~~~t-~-~~~~~~~~~~~~~lgk~~v~v~~d~----------------~gf~~nri----~G~~g~ 127 (290)
++|++ ..++|.|....+ + ++.++.+.+.+.+|-..|.. +.-. +..-++++ +|.||.
T Consensus 271 ~~~Ap-~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a-~al~~~f~~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~ 348 (737)
T TIGR02441 271 LYPAP-LKILDVVRTGYDQGPDAGYEAESKAFGELSMTFES-KALIGLFHGQTDCKKNKFGKPQRPVKTLAVLGAGLMGA 348 (737)
T ss_pred CCccH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHccCCCCCCCCCcccEEEEECCCHhHH
Confidence 35665 456666665543 3 56666655555554444331 1000 11112222 599999
Q ss_pred HHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccch
Q psy17416 128 AWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL 207 (290)
Q Consensus 128 ~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~ 207 (290)
+||..++..|++|+++|++++.++++.+++++.+++++++|.++.. .....+++|+++++++ ++++||+||||+||++
T Consensus 349 gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l 426 (737)
T TIGR02441 349 GIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSL-ERDSILSNLTPTLDYS-GFKNADMVIEAVFEDL 426 (737)
T ss_pred HHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHH-HhccCCeehhhccccH
Confidence 9999999999999999999999999999999999999999888753 4667889999999997 5899999999999999
Q ss_pred HHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHc
Q psy17416 208 QIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 287 (290)
Q Consensus 208 ~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~~~~~~l 287 (290)
++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.||+|||++++.|++++++++.+|++.+
T Consensus 427 ~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~l 506 (737)
T TIGR02441 427 SLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQ 506 (737)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy17416 288 GMK 290 (290)
Q Consensus 288 gk~ 290 (290)
||+
T Consensus 507 gk~ 509 (737)
T TIGR02441 507 GKV 509 (737)
T ss_pred CCe
Confidence 995
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=250.55 Aligned_cols=171 Identities=25% Similarity=0.367 Sum_probs=160.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.+||..++..|++|++||++++.++++.+++++.+++++++|..... .....+++++++++++ +++
T Consensus 9 ~ViG---aG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~-~~~ 83 (286)
T PRK07819 9 GVVG---AGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER-ERDAALARLRFTTDLG-DFA 83 (286)
T ss_pred EEEc---ccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChh-hHHHHHhCeEeeCCHH-HhC
Confidence 4555 7999999999999999999999999999999999999999999999888664 4566789999999996 589
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhC-CCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFM-SSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~-~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
+||+||||+||++++|+.+|+++++.+ ++++|++||||++++++++....+|+||+|+|||+|++.++++||++++.|+
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~ 163 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTS 163 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCC
Q psy17416 274 ERVITRTREIMT-EIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~-~lgk~ 290 (290)
+++++++.+|++ .+||+
T Consensus 164 ~~~~~~~~~~~~~~lgk~ 181 (286)
T PRK07819 164 EATVARAEEFASDVLGKQ 181 (286)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999988 59985
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=251.91 Aligned_cols=165 Identities=31% Similarity=0.487 Sum_probs=154.3
Q ss_pred hHHHHHHHHHHcCceeEEecCCHH-------HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc--hHhhccc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSE-------QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV--LRECLED 195 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e-------~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~--l~~~l~~ 195 (290)
||.+||..++.+|++|+++|++++ .++++.+++++.+++++++|.++.. .....+++|+++++ +.+++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~a~~~ 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAA-QADAVLARIAVVARDGAADALAD 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChh-hHHHHHhCeEeecCcchHHHhcc
Confidence 789999999999999999999995 4788999999999999999888764 45667899998765 6678899
Q ss_pred CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHH
Q psy17416 196 AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSER 275 (290)
Q Consensus 196 aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e 275 (290)
||+||||+||++++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+||||||+.+|+|||++++.|+++
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e 159 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPA 159 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy17416 276 VITRTREIMTEIGMK 290 (290)
Q Consensus 276 ~~~~~~~~~~~lgk~ 290 (290)
+++++.+|++.+||+
T Consensus 160 ~~~~~~~ll~~lGk~ 174 (314)
T PRK08269 160 VVDRLAALLERIGKV 174 (314)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999999985
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=277.92 Aligned_cols=167 Identities=29% Similarity=0.373 Sum_probs=157.9
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||.+||..++ ..|++|+++|.+++.++++..++++.+++++++|.++.. .....+.+|+++++++ ++++||+||
T Consensus 312 aG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~adlVi 389 (699)
T TIGR02440 312 GGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPA-ERDNQMALITGTTDYR-GFKDVDIVI 389 (699)
T ss_pred CcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHcCeEEeCChH-HhccCCEEE
Confidence 6999999999998 589999999999999999999999999999998887653 3456778999999997 689999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~ 280 (290)
||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++|++|++++++++
T Consensus 390 Eav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~ 469 (699)
T TIGR02440 390 EAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATT 469 (699)
T ss_pred EeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q psy17416 281 REIMTEIGMK 290 (290)
Q Consensus 281 ~~~~~~lgk~ 290 (290)
.+|++.+||+
T Consensus 470 ~~~~~~~gk~ 479 (699)
T TIGR02440 470 VALAKKQGKT 479 (699)
T ss_pred HHHHHHcCCe
Confidence 9999999995
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=276.04 Aligned_cols=167 Identities=30% Similarity=0.356 Sum_probs=158.7
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||.+||..++ ..|++|+++|.+++.++++.+++++.+++++++|.++.. .....+++|+++++++ ++++||+||
T Consensus 317 aG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlVi 394 (708)
T PRK11154 317 GGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPS-ERDKQMALISGTTDYR-GFKHADVVI 394 (708)
T ss_pred CchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhcEEEeCChH-HhccCCEEe
Confidence 6999999999999 889999999999999999999999999999998887653 3566789999999996 689999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~ 280 (290)
||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++|++|++++++++
T Consensus 395 Eav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~ 474 (708)
T PRK11154 395 EAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATT 474 (708)
T ss_pred ecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q psy17416 281 REIMTEIGMK 290 (290)
Q Consensus 281 ~~~~~~lgk~ 290 (290)
.+|++.+||+
T Consensus 475 ~~~~~~~gk~ 484 (708)
T PRK11154 475 VALAKKQGKT 484 (708)
T ss_pred HHHHHHcCCc
Confidence 9999999994
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=248.47 Aligned_cols=148 Identities=27% Similarity=0.354 Sum_probs=139.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+||||+||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+|+|||||++.++++|
T Consensus 75 ~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lve 154 (287)
T PRK08293 75 TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAE 154 (287)
T ss_pred eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|++++.|++++++.+.+|++.+||+|+.+++|.|||++||++..+.+++..++.. |. .+++++|++++
T Consensus 155 vv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~-g~------a~~~~iD~a~~ 222 (287)
T PRK08293 155 IMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAK-GV------ADPETIDKTWM 222 (287)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHc-CC------CCHHHHHHHHH
Confidence 9999999999999999999999999999977999999999999999997776655 42 67999998875
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=256.02 Aligned_cols=172 Identities=26% Similarity=0.319 Sum_probs=161.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..||+.++..|++|++||++++.++++.+++++.+++++++|.++.. .....+++++.++++++ +
T Consensus 8 V~VIG---aG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 8 VAVIG---AGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE-ECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred EEEEC---cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHhccEEeCCHHH-h
Confidence 35565 7999999999999999999999999999999999999999999998887653 45677899999999975 7
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||++++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++|+||++|++|+
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts 162 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATA 162 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 163 ~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 163 AEVAEQLYETALAWGKQ 179 (503)
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 99999999999999984
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=253.74 Aligned_cols=172 Identities=23% Similarity=0.322 Sum_probs=162.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..||..++..|++|++||++++.++++.+++++.+++++++|.++.. ..+..+++++.++++++ +
T Consensus 10 V~VIG---aG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 10 VAVIG---AGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE-QADAALARLRPVEALAD-L 84 (507)
T ss_pred EEEEC---CCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH-h
Confidence 45665 7999999999999999999999999999999999999999999999887763 46678899999999975 7
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|++++..+++++|++||||++++++++..+.+|+||+|+|||+|++.++|+||++|++|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 165 ~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 165 PAVADALYALARAWGKT 181 (507)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 99999999999999985
|
|
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=221.15 Aligned_cols=168 Identities=51% Similarity=0.883 Sum_probs=164.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|..|++||+.+++.||+|.+||+.++++..|++.+++.+.++.+.|.++|.++.++++..|+.++++++++++|=++.|
T Consensus 11 Sgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQE 90 (313)
T KOG2305|consen 11 SGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQE 90 (313)
T ss_pred cccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHh
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||+++.|+.+|++|++.+.+.+|++|+||++.++.+.+.+.++++++..||.|||++.||||++|.|.|+++++++..
T Consensus 91 cvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTsp~tVdrt~ 170 (313)
T KOG2305|consen 91 CVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTSPDTVDRTR 170 (313)
T ss_pred hchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC
Q psy17416 282 EIMTEIGM 289 (290)
Q Consensus 282 ~~~~~lgk 289 (290)
++++.+|.
T Consensus 171 ~lM~sigq 178 (313)
T KOG2305|consen 171 ALMRSIGQ 178 (313)
T ss_pred HHHHHhCC
Confidence 99999995
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=228.15 Aligned_cols=169 Identities=27% Similarity=0.369 Sum_probs=155.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..++..|++|.+||++++.++++.+.+++.++.+.+.+............++++.++++++++++||+|||
T Consensus 11 aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVie 90 (287)
T PRK08293 11 AGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIE 90 (287)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEE
Confidence 79999999999999999999999999999999999988888887766554321134456889899999988999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||+++.|+.+++++.+.+++++||+||||+++++++++.+.+|.||+|+|||+|++.++++||++++.|++++++++.
T Consensus 91 avpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~ 170 (287)
T PRK08293 91 AVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVV 170 (287)
T ss_pred eccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 171 ~~~~~~Gk~ 179 (287)
T PRK08293 171 AFAKAIGMV 179 (287)
T ss_pred HHHHHcCCe
Confidence 999999984
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=233.20 Aligned_cols=145 Identities=30% Similarity=0.409 Sum_probs=135.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+ +++++||+||||++|+.++|+++|+++++.+++++|++||||+++++++++.+.+|+|++|+|||+|++.++++|+
T Consensus 78 ~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv 156 (291)
T PRK06035 78 TSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEV 156 (291)
T ss_pred CCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEE
Confidence 456 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++|+.|++++++.+.++++.+||.|+.+ +|.|||++||++..+.++...++.+ |. .+++++|+++.
T Consensus 157 ~~g~~T~~e~~~~~~~~~~~lgk~~v~v-~d~pgfv~nRl~~~~~~ea~~~~~~-g~------a~~~~iD~~~~ 222 (291)
T PRK06035 157 VRAALTSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTRFIEGWLLEAIRSFEI-GI------ATIKDIDEMCK 222 (291)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEe-CCCCCeeHHHHHHHHHHHHHHHHHc-CC------CCHHHHHHHHh
Confidence 9999999999999999999999999999 7999999999999999887666544 52 67999999875
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=230.35 Aligned_cols=145 Identities=26% Similarity=0.363 Sum_probs=135.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|++ ++++||+||||++|++++|+++|++|++.+++++|++||||++++++|++.+++|+|++|+||++|++.++++|+
T Consensus 75 ~~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev 153 (282)
T PRK05808 75 TDLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEI 153 (282)
T ss_pred CCHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEE
Confidence 5665 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++|+.|++++++.+.++++.+||.|+.+ +|+|||++||++..+.++.+.++.+ |. .+++++|.++.
T Consensus 154 ~~g~~t~~e~~~~~~~l~~~lGk~pv~~-~d~~g~i~~Ri~~~~~~ea~~~~~~-gv------~~~~diD~~~~ 219 (282)
T PRK05808 154 IRGLATSDATHEAVEALAKKIGKTPVEV-KNAPGFVVNRILIPMINEAIFVLAE-GV------ATAEDIDEGMK 219 (282)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeeEEe-cCccChHHHHHHHHHHHHHHHHHHh-CC------CCHHHHHHHHH
Confidence 9999999999999999999999999999 8999999999999999997776655 42 56999998886
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=230.47 Aligned_cols=147 Identities=25% Similarity=0.441 Sum_probs=137.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+||||+||+.++|+++|+++++.+++++|++||||+++++++++.+.+|+|++|+|||+|++.++++|
T Consensus 72 ~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve 151 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVE 151 (288)
T ss_pred eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEE
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++.|+.|++++++.+..+++.+||.|+.+ +|+|||++||++..+.++.+.++. .|. .+++++|.++.
T Consensus 152 ~v~g~~t~~~~~~~~~~~l~~lg~~~v~v-~d~~Gf~~nRl~~~~~~ea~~~~~-~gv------~~~~~iD~~~~ 218 (288)
T PRK09260 152 LIRGLETSDETVQVAKEVAEQMGKETVVV-NEFPGFVTSRISALVGNEAFYMLQ-EGV------ATAEDIDKAIR 218 (288)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcccHHHHHHHHHHHHHHHHHHH-cCC------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999999998766654 452 58999999875
|
|
| >KOG1683|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-30 Score=227.61 Aligned_cols=142 Identities=23% Similarity=0.277 Sum_probs=135.7
Q ss_pred hcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 7 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 7 ~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
.++++|+||||++||+++|+++|++||++|+++||++||||+++++++++.+++|++++|+|||+|++.|+|+||+.+.+
T Consensus 66 ~~~~~dmvieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~ 145 (380)
T KOG1683|consen 66 GFANADMVIEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALY 145 (380)
T ss_pred cccccceeccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
||.++++.+.......||.|++| ++++||.+||++..|..++...+...| .+|..+|+....
T Consensus 146 tS~~~iA~Ain~~~~~gk~~vvV-g~c~gf~v~r~l~~y~~~~~~~l~e~g-------~~p~~iD~~~t~ 207 (380)
T KOG1683|consen 146 TSKLTIATAINGGSPAGKLPVVV-GNCCGFRVNRLLPPYTIGLNELLLEIG-------ADPWLIDSLITK 207 (380)
T ss_pred CCchHHHHHHhcccccCCccEEe-ccCCceEEEecccHHHHHHHHHHHHcC-------CCHHHHHHHHHh
Confidence 99999999999999999999999 899999999999999999988888866 678888877663
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=216.67 Aligned_cols=168 Identities=24% Similarity=0.438 Sum_probs=154.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..++..|++|++||++++.++++.+++...+....+.|..+.. .......+++.++++++++++||+||+
T Consensus 9 ~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~aD~Vi~ 87 (288)
T PRK09260 9 AGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA-ARQAALARLSYSLDLKAAVADADLVIE 87 (288)
T ss_pred ccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCcHHHhhcCCCEEEE
Confidence 7999999999999999999999999999999998888777776666666542 345567788889999888999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+|++.++|+.+|+++.+.+++++++++|+|+++++++++.+.+|.|++|+|||+|++.++++|+++|++|++++++++.
T Consensus 88 avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~ 167 (288)
T PRK09260 88 AVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAK 167 (288)
T ss_pred eccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 168 ~~l~~lg~~ 176 (288)
T PRK09260 168 EVAEQMGKE 176 (288)
T ss_pred HHHHHcCCe
Confidence 999999984
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=221.95 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=134.5
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|++ ++++||+||||+||+.++|+.+|+++++.+++++|++||||++++++|++.+.+|+|++|+|||+|++.++++|+
T Consensus 76 ~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei 154 (292)
T PRK07530 76 TDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVEL 154 (292)
T ss_pred CCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEE
Confidence 5664 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+.|..|++++++.+..++..+||.|+.+ +|.|||++||++..+.++...++.+ |. .+++++|+++.
T Consensus 155 ~~g~~t~~~~~~~~~~~~~~~gk~~v~~-~d~pg~i~nRl~~~~~~ea~~~~~~-g~------~~~~~iD~~~~ 220 (292)
T PRK07530 155 IRGIATDEATFEAAKEFVTKLGKTITVA-EDFPAFIVNRILLPMINEAIYTLYE-GV------GSVEAIDTAMK 220 (292)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCChHHHHHHHHHHHHHHHHHHh-CC------CCHHHHHHHHH
Confidence 9999999999999999999999999988 8999999999999998887665554 53 48999998875
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=215.92 Aligned_cols=167 Identities=26% Similarity=0.404 Sum_probs=155.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..++..|++|+++|++++.++++.+++++.++.+.+.|.++.. .......++++++++++ +++||+|||
T Consensus 11 ~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~-~~~aDlVi~ 88 (282)
T PRK05808 11 AGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA-DKEAALARITGTTDLDD-LKDADLVIE 88 (282)
T ss_pred cCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH-hccCCeeee
Confidence 7999999999999999999999999999999999999999999988876543 34455678888888874 899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|+++++.++++++|+||||+++++.+++.+.+|.|++|+||++|++.++++||++++.|++++++++.
T Consensus 89 av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~ 168 (282)
T PRK05808 89 AATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVE 168 (282)
T ss_pred cccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 169 ~l~~~lGk~ 177 (282)
T PRK05808 169 ALAKKIGKT 177 (282)
T ss_pred HHHHHcCCe
Confidence 999999984
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=214.68 Aligned_cols=167 Identities=32% Similarity=0.488 Sum_probs=149.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH---HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT---LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~---~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
+|.||..+|..++..|++|++||++++.++++.+++++. ++.+++.|..... .......++..+++++ ++++||+
T Consensus 11 aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDl 88 (291)
T PRK06035 11 SGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSED-EAKAIMARIRTSTSYE-SLSDADF 88 (291)
T ss_pred ccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHH-HHHHHHhCcEeeCCHH-HhCCCCE
Confidence 799999999999999999999999999999988877763 5555666655331 2345567788888885 6899999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHH
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVIT 278 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~ 278 (290)
||||+|++.++|+.+|+++++.+++++|++||||+++++++++.+.+|+||+|+|||+|++.++++|+++++.|++++++
T Consensus 89 Vieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~T~~e~~~ 168 (291)
T PRK06035 89 IVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFN 168 (291)
T ss_pred EEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q psy17416 279 RTREIMTEIGMK 290 (290)
Q Consensus 279 ~~~~~~~~lgk~ 290 (290)
++.+|++.+||+
T Consensus 169 ~~~~~~~~lgk~ 180 (291)
T PRK06035 169 TTVELSKKIGKI 180 (291)
T ss_pred HHHHHHHHcCCe
Confidence 999999999984
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=214.18 Aligned_cols=171 Identities=26% Similarity=0.358 Sum_probs=155.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
++++ +|.||..+|..++..|++|.+||++++.++++.+++++.++.+.+.|.+... .......+++++++++ +++
T Consensus 8 ~vIG---aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 8 GVIG---AGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE-ARAAALARISTATDLE-DLA 82 (292)
T ss_pred EEEC---CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEeeCCHH-Hhc
Confidence 4454 7999999999999999999999999999999999999998888877766542 2344567888888886 589
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||||+||+.++|+.+|+++.+.++++++|+||||+++++++++.+.+|.|++|+|||+|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+||+
T Consensus 163 ~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 163 ATFEAAKEFVTKLGKT 178 (292)
T ss_pred HHHHHHHHHHHHcCCe
Confidence 9999999999999984
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=212.40 Aligned_cols=172 Identities=29% Similarity=0.386 Sum_probs=157.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||.+||..++..|++|.+||++++.++++.+++++.++++++.|.++.. ......+++.++++++ ++
T Consensus 7 V~vIG---~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~ 81 (295)
T PLN02545 7 VGVVG---AGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE-EADATLGRIRCTTNLE-EL 81 (295)
T ss_pred EEEEC---CCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhceEeeCCHH-Hh
Confidence 35565 7999999999999999999999999999999999999999999888777653 2344556777777876 58
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.|++|+||++||+.++++|+++++.|+
T Consensus 82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~ 161 (295)
T PLN02545 82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTS 161 (295)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 162 ~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 162 DEVFDATKALAERFGKT 178 (295)
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 99999999999999984
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=216.25 Aligned_cols=145 Identities=30% Similarity=0.373 Sum_probs=134.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+++ +++++||+|||||+|+.++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+||+|||+.++++|+
T Consensus 76 ~~~-~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lvei 154 (295)
T PLN02545 76 TNL-EELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEI 154 (295)
T ss_pred CCH-HHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEE
Confidence 345 4689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+.++.|++++++.+..++..+||.++.+ +|+|||++||++..+.++.+.++.+ |. .+++++|.++.
T Consensus 155 v~g~~t~~e~~~~~~~ll~~lG~~~~~~-~d~~g~i~nri~~~~~~ea~~~~~~-gv------~~~~~iD~~~~ 220 (295)
T PLN02545 155 IRGADTSDEVFDATKALAERFGKTVVCS-QDYPGFIVNRILMPMINEAFYALYT-GV------ASKEDIDTGMK 220 (295)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeeEEe-cCcccHHHHHHHHHHHHHHHHHHHc-CC------CCHHHHHHHHH
Confidence 9999999999999999999999999988 8999999999999998887776655 42 67999998775
|
|
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-28 Score=202.03 Aligned_cols=143 Identities=50% Similarity=0.730 Sum_probs=134.5
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
|++|+|.+++|=.+.|||||++++|+++|++||+++.|.||++|.||++..+.+.+.+.+.++++..|+.|||++.||||
T Consensus 75 t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvE 154 (313)
T KOG2305|consen 75 TTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVE 154 (313)
T ss_pred CccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchhe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEe
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLY 143 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~ 143 (290)
+|+.|.|+++++++..++.+.+|..||..+++.-||.+||+...+...-..+.+.++..|.-+
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 999999999999999999999999999999999999999999888887777777766554433
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-27 Score=224.59 Aligned_cols=148 Identities=39% Similarity=0.577 Sum_probs=136.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+||||+||++++|+++|+++++.+++++||+||||+++++++++.+.+|+|+++.|||||++.++++|
T Consensus 71 ~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lve 150 (495)
T PRK07531 71 CASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVE 150 (495)
T ss_pred eCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEE
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+++|+.|++++++.+..|+..+||.|+.+.++.+||++||++..+.+++..+..+.| .+++++++++.
T Consensus 151 vv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~-------~s~~~id~~~~ 218 (495)
T PRK07531 151 LVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGI-------ATTEEIDDVIR 218 (495)
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHh
Confidence 999999999999999999999999999998899999999999887666555555555 67777777665
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-26 Score=205.43 Aligned_cols=172 Identities=37% Similarity=0.649 Sum_probs=158.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.++|..++..|++|++||++++.++++.++++..++.+.+.|..++. .....+++++.++++.++++
T Consensus 6 ~VIG---~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~-~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 6 AIIG---AGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGE-APDAVLARIRVTDSLADAVA 81 (308)
T ss_pred EEEC---ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchh-hHHHHhcCeEEECcHHHhhC
Confidence 4555 7999999999999999999999999999999999999999888888877653 34566778888999998899
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||+|+|++.++|+.+++++.+.+++++++.||||++.++++++.+.++.|+++.|||+|++.++++||++++.|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+||+
T Consensus 162 ~~~~~~~~~~~~lG~~ 177 (308)
T PRK06129 162 ATLARAEALYRAAGQS 177 (308)
T ss_pred HHHHHHHHHHHHcCCE
Confidence 9999999999999984
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=206.41 Aligned_cols=148 Identities=37% Similarity=0.660 Sum_probs=137.9
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+|+||+||+.++|+.+|+++++.++++++++||||+++++++++.+.+|.|++|.||+||++.++++|
T Consensus 73 ~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lve 152 (308)
T PRK06129 73 TDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVE 152 (308)
T ss_pred ECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEE
Confidence 36888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++++..|++++++.+..|++.+||+|+.+.++.+||++||++..+.+++..+..+.| .+++++++++.
T Consensus 153 iv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~-------~~~~~id~~~~ 220 (308)
T PRK06129 153 VVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGV-------ASVDDIDAVIR 220 (308)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHH
Confidence 999999999999999999999999999997799999999998887777666555555 78999998886
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=210.03 Aligned_cols=169 Identities=38% Similarity=0.561 Sum_probs=144.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||.+||..+++.|++|.+||++++.+++..+.+++...... .+.. ......+++++++++++++
T Consensus 7 IavIG---~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~--~~~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 7 AACIG---GGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTD--APLPPEGRLTFCASLAEAV 78 (495)
T ss_pred EEEEC---cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhcc--chhhhhhceEeeCCHHHHh
Confidence 46676 89999999999999999999999999988765443333322211 1111 0112235678889998889
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|+++++.+++++||.||||+++++.+++.+.+|.|+++.|||||++.++++||++|+.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 159 ~e~~~~~~~~~~~lG~~ 175 (495)
T PRK07531 159 PETIRRAKEILREIGMK 175 (495)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 99999999999999984
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=195.13 Aligned_cols=147 Identities=27% Similarity=0.438 Sum_probs=135.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+++++++||+||+|++|+.+.|+++|++++..+++++|++||||+++++++++.+.+|+|++|+||++|+..++++|+
T Consensus 71 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i 150 (311)
T PRK06130 71 AGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEV 150 (311)
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEE
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+.++.|++++++.+.+++..+|+.++.+.++.|||++||++..+..+...++.+.| .+++++++++.
T Consensus 151 ~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~-------~~~~~id~~~~ 217 (311)
T PRK06130 151 VRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGV-------ASAEDIDEVVK 217 (311)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999996799999999998877777655555554 68999998885
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=182.86 Aligned_cols=167 Identities=28% Similarity=0.444 Sum_probs=145.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.++|..+++.|++|+++|++++.++++.+.+.+......+.+. ......+++.+++++++++
T Consensus 8 ~vIG---aG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 8 AIIG---AGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI------ASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred EEEC---CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc------HHHHhhceEEeCCHHHHhc
Confidence 5565 799999999999999999999999999998888776655443222111 1123456677788888889
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||+|+|++.+.|+.+++++.+.++++++|+|+||+++++++++.+.++.||+|+||++|++.++++|+++++.|++
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~ 158 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSP 158 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+|++
T Consensus 159 ~~~~~v~~l~~~~G~~ 174 (311)
T PRK06130 159 QTVATTMALLRSIGKR 174 (311)
T ss_pred HHHHHHHHHHHHcCCE
Confidence 9999999999999984
|
|
| >KOG1683|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-23 Score=185.95 Aligned_cols=163 Identities=23% Similarity=0.296 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
||+.||..+...|+++++.|.+...++++..++...+...+.++.+.+ ........++..+.|..+ ++++|+|||++.
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~-~~~~~~~~~L~~~~Dy~~-~~~~dmvieav~ 78 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSG-LEREKTKSNLVETLDYTG-FANADMVIEAVF 78 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccc-cchhhhhhhccccccccc-ccccceeccchh
Confidence 789999999999999999999999999999999999988888887776 355667778888888885 899999999999
Q ss_pred cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy17416 205 EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIM 284 (290)
Q Consensus 205 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~~~~ 284 (290)
|++++|++++++|+++++++||++||||++++.++++.+.+|++++|+|||+|.+.|+|+||+.+..|+..++..+.+..
T Consensus 79 edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~ 158 (380)
T KOG1683|consen 79 EDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGG 158 (380)
T ss_pred hhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCC
Q psy17416 285 TEIGM 289 (290)
Q Consensus 285 ~~lgk 289 (290)
...||
T Consensus 159 ~~~gk 163 (380)
T KOG1683|consen 159 SPAGK 163 (380)
T ss_pred cccCC
Confidence 88887
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=122.90 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=114.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ .|.||.+++..+...|++|.+||++++.++++.+ .|.... .+++.+ .++
T Consensus 4 ~IIG---~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~~------------~~~~~~-~~~ 56 (279)
T PRK07417 4 GIVG---LGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVDE------------ASTDLS-LLK 56 (279)
T ss_pred EEEe---ecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCccc------------ccCCHh-Hhc
Confidence 4555 7999999999999999999999999988777654 222211 234444 578
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCC------------CCCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP------------YFIP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~------------~~~~ 262 (290)
+||+||+|+|.+.. .++++++.+.+++++++ ++++|.+.+.+......+.+|+++||+..+ +..+
T Consensus 57 ~aDlVilavp~~~~--~~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~ 133 (279)
T PRK07417 57 DCDLVILALPIGLL--LPPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNR 133 (279)
T ss_pred CCCEEEEcCCHHHH--HHHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCC
Confidence 99999999997764 57889999999999877 677777777666555555689999997654 2456
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.+-++|++.++++.++.+.+|++.+|++
T Consensus 134 ~~~l~p~~~~~~~~~~~v~~l~~~lG~~ 161 (279)
T PRK07417 134 PWVLTPTENTDLNALAIVEELAVSLGSK 161 (279)
T ss_pred cEEEccCCCCCHHHHHHHHHHHHHcCCE
Confidence 6779999999999999999999999973
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=118.57 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=100.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..+...|++|.+||+++. ++.++++++||+||+
T Consensus 107 ~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------------------------~~~~~~~~~aDlVil 148 (374)
T PRK11199 107 KGQLGRLFAKMLTLSGYQVRILEQDDW--------------------------------------DRAEDILADAGMVIV 148 (374)
T ss_pred CChhhHHHHHHHHHCCCeEEEeCCCcc--------------------------------------hhHHHHHhcCCEEEE
Confidence 599999999999999999999998531 122345779999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCCCCcEEEeccCCCCCCCCeEE--EecCCCCCHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE--IVPAAWTSERVI 277 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvE--vv~~~~t~~e~~ 277 (290)
|+|++. ..++++++.+ ++++++++..+|. ..+..+..... .+|+|.||+.++....+.. ++..+.++++.+
T Consensus 149 avP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~ 223 (374)
T PRK11199 149 SVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAY 223 (374)
T ss_pred eCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHH
Confidence 999776 6789999998 8999999866654 44667765543 3699999999886655443 566778899999
Q ss_pred HHHHHHHHHcCCC
Q psy17416 278 TRTREIMTEIGMK 290 (290)
Q Consensus 278 ~~~~~~~~~lgk~ 290 (290)
+++.+||+.+|.+
T Consensus 224 ~~~~~l~~~lG~~ 236 (374)
T PRK11199 224 QWLLEQIQVWGAR 236 (374)
T ss_pred HHHHHHHHHCCCE
Confidence 9999999999963
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=114.43 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=109.4
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ .|.||.++|..+.+.|++|.+|+++++....... ...|..+ ..+++++++++
T Consensus 4 ~iIG---~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~------------~~~~~~~~~~~ 59 (359)
T PRK06545 4 LIVG---LGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID------------ELAADLQRAAA 59 (359)
T ss_pred EEEE---eCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc------------ccccCHHHHhc
Confidence 5565 7999999999999999999999988765433221 0112111 12467777889
Q ss_pred cCcEEEEccccchHHHHHHHHHHhh-hCCCCcEEEeCCCCcC---HHHHhccCCCCCcEEEeccCCCC------------
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDI-FMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPP------------ 258 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~~---~~~la~~~~~~~r~ig~Hf~~p~------------ 258 (290)
+||+||.|+|.+ ...++++++.+ .++++++++ +.+|.+ +..+........+|+|.||+...
T Consensus 60 ~aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivt-Dv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~l 136 (359)
T PRK06545 60 EADLIVLAVPVD--ATAALLAELADLELKPGVIVT-DVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADL 136 (359)
T ss_pred CCCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEE-eCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHH
Confidence 999999999975 47899999987 478888775 344443 34455444566799999986543
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 259 YFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 259 ~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
+.....-|++++.++++.++.+.++++.+|++
T Consensus 137 f~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~ 168 (359)
T PRK06545 137 FENAPWVLTPDDHTDPDAVAELKDLLSGTGAK 168 (359)
T ss_pred HCCCcEEEecCCCCCHHHHHHHHHHHHHcCCE
Confidence 23444568999999999999999999999963
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-11 Score=107.48 Aligned_cols=143 Identities=18% Similarity=0.299 Sum_probs=107.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCC--HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch-HhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVL--SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL-RECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~--~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l-~~~l~~aDl 198 (290)
.|.||+++|..+...|+.|.+++++ ...+..+.+ .|..+.. +.+. .+++.++|+
T Consensus 11 ~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-----------lgv~d~~------------~~~~~~~~~~~aD~ 67 (279)
T COG0287 11 LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-----------LGVIDEL------------TVAGLAEAAAEADL 67 (279)
T ss_pred CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-----------cCccccc------------ccchhhhhcccCCE
Confidence 7999999999999999988665544 444444443 3333321 2232 456788999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCCCCcEEEeccCCCC------CCCCeEEEecCC
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQFIVAHPVNPP------YFIPLVEIVPAA 270 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~------~~~~lvEvv~~~ 270 (290)
||.||| ...--++++++.+.++++++++ +++++-.++.+....+...+|+|.||+..+ +....+-++|++
T Consensus 68 VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 68 VIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred EEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCC
Confidence 999999 5557799999999999999997 444555555555554332289999997766 345688899999
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q psy17416 271 WTSERVITRTREIMTEIGM 289 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lgk 289 (290)
.++.+.++.+..+|+.+|-
T Consensus 146 ~~~~~~~~~~~~~~~~~ga 164 (279)
T COG0287 146 GTEKEWVEEVKRLWEALGA 164 (279)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999884
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=106.70 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=100.3
Q ss_pred HHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccc
Q psy17416 129 WAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI 206 (290)
Q Consensus 129 ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~ 206 (290)
+|..+.+.| +.|..+|++++.++++.+ .|..+.. ..+ .+++.++|+||.|+|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~-----------~g~~~~~------------~~~-~~~~~~~DlvvlavP-- 54 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE-----------LGIIDEA------------STD-IEAVEDADLVVLAVP-- 54 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH-----------TTSSSEE------------ESH-HHHGGCCSEEEE-S---
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH-----------CCCeeec------------cCC-HhHhcCCCEEEEcCC--
Confidence 356677777 789999999999888876 4554431 233 446899999999999
Q ss_pred hHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCCCCcEEEeccCCCC------------CCCCeEEEecCCCC
Q psy17416 207 LQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQFIVAHPVNPP------------YFIPLVEIVPAAWT 272 (290)
Q Consensus 207 ~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~------------~~~~lvEvv~~~~t 272 (290)
...-..+++++.+.++++++++ ++++.-.+..+........+|+|.||+..+ +..+.+-|+|++.+
T Consensus 55 ~~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~ 134 (258)
T PF02153_consen 55 VSAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDT 134 (258)
T ss_dssp HHHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS
T ss_pred HHHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCC
Confidence 6668899999999999999987 344444455555555556799999997766 34678899999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy17416 273 SERVITRTREIMTEIGM 289 (290)
Q Consensus 273 ~~e~~~~~~~~~~~lgk 289 (290)
+++.++.+.+||+.+|-
T Consensus 135 ~~~~~~~~~~l~~~~Ga 151 (258)
T PF02153_consen 135 DPEALELVEELWEALGA 151 (258)
T ss_dssp -HHHHHHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHHHCCC
Confidence 99999999999999984
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-13 Score=125.25 Aligned_cols=153 Identities=13% Similarity=0.129 Sum_probs=119.6
Q ss_pred cchhHHHHHH---HH---HHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 122 HGLIGQAWAM---IF---ASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~---~~---~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
+|.+|..++. .+ ...|++|.+||++++.++.....+++.+... ....++..++|+.+++++
T Consensus 8 aGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-------------~~~~~I~~ttD~~eal~~ 74 (423)
T cd05297 8 AGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-------------GAPLKIEATTDRREALDG 74 (423)
T ss_pred CChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-------------CCCeEEEEeCCHHHHhcC
Confidence 5788887655 22 4557899999999999888776665544321 012467788999999999
Q ss_pred CcEEEEccc----------cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCC--CCcEEEeccCCCCCCC--
Q psy17416 196 AIFIQESVP----------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH--RSQFIVAHPVNPPYFI-- 261 (290)
Q Consensus 196 aDlVieavp----------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~--~~r~ig~Hf~~p~~~~-- 261 (290)
||+||++++ |++.+|..+++++++.+++++++.+++|...+.+++..+.. | +++.+||+||+..+
T Consensus 75 AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv~i~t~ 153 (423)
T cd05297 75 ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPMAELTW 153 (423)
T ss_pred CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChHHHHHH
Confidence 999999999 46899999999999999999999999999999999998874 7 99999999999877
Q ss_pred ---CeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 262 ---PLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 262 ---~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+..+ .+.-.+...+......+.+.+|+
T Consensus 154 ~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~ 183 (423)
T cd05297 154 ALNRYTP-IKTVGLCHGVQGTAEQLAKLLGE 183 (423)
T ss_pred HHHHhCC-CCEEEECCcHHHHHHHHHHHhCC
Confidence 5554 33333343466667777777775
|
linked to 3D####ucture |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-10 Score=102.67 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=108.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.||..++..+...|+ +|.+||++++..+.+.+ .|... ....++++
T Consensus 9 I~IIG---~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~~------------~~~~~~~~ 62 (307)
T PRK07502 9 VALIG---IGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLGD------------RVTTSAAE 62 (307)
T ss_pred EEEEe---eCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCCc------------eecCCHHH
Confidence 35555 79999999999998885 89999999987765543 22211 12345666
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCC---------
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPY--------- 259 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~--------- 259 (290)
++++||+||.|+|... ...+++++.+.++++++++ +.++.... .+........+|++.||+....
T Consensus 63 ~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~-dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~ 139 (307)
T PRK07502 63 AVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVT-DVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA 139 (307)
T ss_pred HhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEE-eCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence 7889999999999654 6788888988899998775 34444433 3444444445899999987543
Q ss_pred ---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 260 ---FIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 260 ---~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
....+.+++...++++.++.+.++++.+|.+
T Consensus 140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~ 173 (307)
T PRK07502 140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGAR 173 (307)
T ss_pred HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 2235678888889999999999999999963
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=100.99 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=112.5
Q ss_pred eeEEecccchhHHHHHHHHHHcCc----eeEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGY----KVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~----~V~l~-d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
||++ +|.||..++..+.+.|+ +|+++ +++++..+.+.+ .| +....+.
T Consensus 4 ~~IG---~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-----------~g--------------~~~~~~~ 55 (266)
T PLN02688 4 GFIG---AGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-----------LG--------------VKTAASN 55 (266)
T ss_pred EEEC---CcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-----------cC--------------CEEeCCh
Confidence 6776 89999999999999998 88888 999877544322 11 2234566
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~ 268 (290)
.+++++||+||.|++ .....+++.++.+.++++++++|.+++++.+.+....... +++..+|..|..... ..-++.
T Consensus 56 ~e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~ 132 (266)
T PLN02688 56 TEVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSL 132 (266)
T ss_pred HHHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEe
Confidence 677889999999997 4447788888888888899888999999999998766544 677777766654443 444667
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
+..++++..+++.++++.+|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~ 153 (266)
T PLN02688 133 GPAATADDRDLVATLFGAVGK 153 (266)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 888899999999999999986
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.8e-10 Score=98.94 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=112.6
Q ss_pred eeEEecccchhHHHHHHHHHHcC---ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG---YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G---~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ .|.||..++..+.+.| +.|.+++++++..++..+.. ++..+.+.++
T Consensus 6 ~iIG---~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------------------------g~~~~~~~~~ 58 (267)
T PRK11880 6 GFIG---GGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------------------------GVRAATDNQE 58 (267)
T ss_pred EEEe---chHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------------------------CCeecCChHH
Confidence 5565 7999999999999888 78999999998765443310 1123456666
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEecCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAA 270 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~~~ 270 (290)
.+.++|+||.|+|... -+++++++.+.+ +++|+|.+++++.+.+...+++..+++..||..|..... ..-++++.
T Consensus 59 ~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 7889999999999544 678888887766 467778999999999988776667899999977765443 44578888
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q psy17416 271 WTSERVITRTREIMTEIGM 289 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lgk 289 (290)
.++++..+.+..+++.+|+
T Consensus 135 ~~~~~~~~~v~~l~~~lG~ 153 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGK 153 (267)
T ss_pred CCCHHHHHHHHHHHHhCCe
Confidence 9999999999999999996
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-10 Score=106.87 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=109.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||.+++..+...|++|.++|++++...+... +.| +.++++..+++.+||+||.
T Consensus 9 ~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g--------------v~~~~~~~e~~~~aDvVIl 64 (437)
T PRK08655 9 TGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG--------------VEYANDNIDAAKDADIVII 64 (437)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC--------------CeeccCHHHHhccCCEEEE
Confidence 4899999999999999999999999876433221 111 1234567777899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCCCCCcEEEeccCCC----CCCCCeEEEecCCCCCHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVNP----PYFIPLVEIVPAAWTSER 275 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~~~~r~ig~Hf~~p----~~~~~lvEvv~~~~t~~e 275 (290)
|+|.+. ...+++++.+.+++++++++.+| ......+.+..+...+|++.||+.. ......+.++|++.++++
T Consensus 65 avp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~ 142 (437)
T PRK08655 65 SVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNP 142 (437)
T ss_pred ecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHH
Confidence 999654 56889999999999998875554 4555566666555568999998643 345667889999999999
Q ss_pred HHHHHHHHHHHcCC
Q psy17416 276 VITRTREIMTEIGM 289 (290)
Q Consensus 276 ~~~~~~~~~~~lgk 289 (290)
.++++.++|+.+|.
T Consensus 143 ~~~~v~~ll~~~G~ 156 (437)
T PRK08655 143 WFDKVKNFLEKEGA 156 (437)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999986
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=102.73 Aligned_cols=141 Identities=19% Similarity=0.277 Sum_probs=100.3
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..+|..+++.|++|.+||++++.++++.+ .|. ...+++.++++
T Consensus 3 gvIG---~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~--------------~~~~~~~~~~~ 54 (291)
T TIGR01505 3 GFIG---LGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA-----------AGA--------------VTAETARQVTE 54 (291)
T ss_pred EEEE---ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CCC--------------cccCCHHHHHh
Confidence 5666 7999999999999999999999999988765433 111 12356677889
Q ss_pred cCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCC-------CC
Q psy17416 195 DAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF-------IP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~-------~~ 262 (290)
+||+||+|+|++..++..++. .+.+.++++++++ ++|+.++. ++++.+..+ |.||..+|.. ..
T Consensus 55 ~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g 129 (291)
T TIGR01505 55 QADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEG 129 (291)
T ss_pred cCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcC
Confidence 999999999998877766653 3666788899887 44444443 565555433 5666554422 12
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.+.++.+ .++++++++.++++.+|++
T Consensus 130 ~l~i~~g--g~~~~~~~~~~ll~~lg~~ 155 (291)
T TIGR01505 130 TLSIMVG--GDQAVFDRVKPLFEALGKN 155 (291)
T ss_pred CEEEEec--CCHHHHHHHHHHHHHhcCC
Confidence 2344444 3789999999999999974
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-13 Score=126.25 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=93.6
Q ss_pred CCcHHhhcccCcEEEEccc----------CChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCC--CCceeeec
Q psy17416 1 TPVLRECLEDAIFIQESVP----------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH--RSQFIVAH 68 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~--~~r~~g~h 68 (290)
|+|+++++++||+||++++ |++++|+.+|+++++.+++++++.+|+|...+.+|+..+.+ | +++++|
T Consensus 65 ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~ 143 (423)
T cd05297 65 TTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLN 143 (423)
T ss_pred eCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEE
Confidence 5799999999999999999 57999999999999999999999999999999999999874 8 999999
Q ss_pred cCCCCCCC-----CeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 69 PVNPPYFI-----PLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 69 f~~P~~~~-----~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
|+||++.+ +..+ ++.-.++..++.....+++.+|+.|
T Consensus 144 ~tNPv~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 144 YANPMAELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred cCChHHHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 99999988 7777 5666666668888888999999855
|
linked to 3D####ucture |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=102.52 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=107.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHH-HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l-~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-|||+ +|.||..||..+.+.||+|.+||++++.. +.+.+ . ......++.++
T Consensus 3 IafIG---LG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~-----------~--------------Ga~~a~s~~ea 54 (286)
T COG2084 3 IAFIG---LGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA-----------A--------------GATVAASPAEA 54 (286)
T ss_pred EEEEc---CchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH-----------c--------------CCcccCCHHHH
Confidence 47887 89999999999999999999999999873 33222 1 12335677778
Q ss_pred cccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCCC------
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYFI------ 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~~------ 261 (290)
++++|+||.++|...+++..++. .+.+.++++++++ +.|+++++ ++++.+... |.+|.+.|...
T Consensus 55 a~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~I-DmSTisp~~a~~~a~~~~~~----G~~~lDAPVsGg~~~A~ 129 (286)
T COG2084 55 AAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVI-DMSTISPETARELAAALAAK----GLEFLDAPVSGGVPGAA 129 (286)
T ss_pred HHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHhc----CCcEEecCccCCchhhh
Confidence 99999999999999999888884 6888899999987 33334433 555554433 77887766332
Q ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 262 --PLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 262 --~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-|.-++.| +++.+++++.+++.+|++
T Consensus 130 ~GtLtimvGG---~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 130 AGTLTIMVGG---DAEAFERAKPVLEAMGKN 157 (286)
T ss_pred hCceEEEeCC---CHHHHHHHHHHHHHhcCc
Confidence 25556666 999999999999999984
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.15 E-value=9e-09 Score=102.59 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc-cCcEEEE
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE-DAIFIQE 201 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~-~aDlVie 201 (290)
|.||..+|..+...|++|..||++... +.+.+ .| +....++++.+. ++|+||.
T Consensus 378 G~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~-----------~G--------------v~~~~~~~el~~~~aDvVIL 431 (667)
T PLN02712 378 GNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQK-----------LG--------------VSYFSDADDLCEEHPEVILL 431 (667)
T ss_pred CHHHHHHHHHHHHCcCEEEEEECChHH-HHHHH-----------cC--------------CeEeCCHHHHHhcCCCEEEE
Confidence 789999999999999999999998542 22211 11 112456666554 5899999
Q ss_pred ccccchHHHHHHHHHHhh-hCCCCcEEEeCCCC--cCHHHHhccCCCCCcEEEeccCCCCCCCC-----eE-----EEec
Q psy17416 202 SVPEILQIKHQVYRAIDI-FMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYFIP-----LV-----EIVP 268 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts~--~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-----lv-----Evv~ 268 (290)
|+|. ..-..++.++.. .++++++++.-+|+ .++..+....+...+|++.||..++...+ +- -++.
T Consensus 432 avP~--~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~ 509 (667)
T PLN02712 432 CTSI--LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIG 509 (667)
T ss_pred CCCh--HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeC
Confidence 9994 446677887765 57889998855444 45556655555545799999988776431 11 1123
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
++....+.++.+.++|+.+|.
T Consensus 510 ~~~~~~~~~~~l~~l~~~lGa 530 (667)
T PLN02712 510 SDDRRVSRCDSFLDIFAREGC 530 (667)
T ss_pred CCcchHHHHHHHHHHHHHcCC
Confidence 445566677777899999985
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.3e-11 Score=97.03 Aligned_cols=139 Identities=25% Similarity=0.283 Sum_probs=98.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+.+.|++|.+||++++..++..+ .......++.+++
T Consensus 4 Ig~IG---lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-------------------------~g~~~~~s~~e~~ 55 (163)
T PF03446_consen 4 IGFIG---LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-------------------------AGAEVADSPAEAA 55 (163)
T ss_dssp EEEE-----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-------------------------TTEEEESSHHHHH
T ss_pred EEEEc---hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-------------------------hhhhhhhhhhhHh
Confidence 46777 7999999999999999999999999988776665 1234578899999
Q ss_pred ccCcEEEEccccchHHHHHHHHH--HhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCC--------C
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPY--------F 260 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~--l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~--------~ 260 (290)
++||+|+.|+|.+..++ +++.+ +.+.++++.+++ ++|+.+++ ++++.+... |.||...|- .
T Consensus 56 ~~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~ 129 (163)
T PF03446_consen 56 EQADVVILCVPDDDAVE-AVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEE 129 (163)
T ss_dssp HHBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHH
T ss_pred hcccceEeecccchhhh-hhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhhc----cceeeeeeeecccccccc
Confidence 99999999999877764 45555 788888998887 44444443 455444333 355544331 2
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..+.-++.| +++++++++.+++.+|+
T Consensus 130 g~l~~~~gG---~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 130 GTLTIMVGG---DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp TTEEEEEES----HHHHHHHHHHHHHHEE
T ss_pred cceEEEccC---CHHHHHHHHHHHHHHhC
Confidence 345667776 88999999999999876
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=95.26 Aligned_cols=142 Identities=23% Similarity=0.279 Sum_probs=102.5
Q ss_pred eeEEecccchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||.+++..+.+.|+ +|..||++++..+.+.+ .|..+ ...+++++
T Consensus 4 ~iIG---~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-----------~g~~~-------------~~~~~~~~ 56 (275)
T PRK08507 4 GIIG---LGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-----------LGLVD-------------EIVSFEEL 56 (275)
T ss_pred EEEc---cCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-----------CCCCc-------------ccCCHHHH
Confidence 4565 79999999999998886 78889999987765543 22211 12355554
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCC--CCCcEEEeccCC------CCC-----
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST--HRSQFIVAHPVN------PPY----- 259 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~--~~~r~ig~Hf~~------p~~----- 259 (290)
.+||+||.|+|.+. ..+++.++.+ ++++++|+..+| .... +.+.+. .+.+|++.||.. |..
T Consensus 57 -~~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs-~k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l 130 (275)
T PRK08507 57 -KKCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGS-TKAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGL 130 (275)
T ss_pred -hcCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECcc-chHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHH
Confidence 45999999999665 5678888888 889998875333 3322 222221 235799999974 221
Q ss_pred -CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 260 -FIPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 260 -~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
....+.+++++.++++.++.+.++|+.+|.
T Consensus 131 ~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~ 161 (275)
T PRK08507 131 YEGKVVVLCDVEKSGEKHQERAKEIFSGLGM 161 (275)
T ss_pred hCCCeEEEecCCCCCHHHHHHHHHHHHHhCC
Confidence 355788999999999999999999999996
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=100.68 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc
Q psy17416 126 GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE 205 (290)
Q Consensus 126 g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe 205 (290)
|..+|..++..|++|++||++++.++... ++.+.. .+++.+++..+++++||+||.|+|.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~--------------~Gi~~asd~~eaa~~ADvVIlaVP~ 91 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVED--------------AGVKVVSDDAEAAKHGEIHILFTPF 91 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHH--------------CCCEEeCCHHHHHhCCCEEEEECCC
Confidence 77889999999999999999998654311 111111 1234556777788999999999996
Q ss_pred chHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHH----hccCCCCCcEEEeccCCCCCC----CCeEEEecCC------C
Q psy17416 206 ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL----SEHSTHRSQFIVAHPVNPPYF----IPLVEIVPAA------W 271 (290)
Q Consensus 206 ~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l----a~~~~~~~r~ig~Hf~~p~~~----~~lvEvv~~~------~ 271 (290)
.. ..++++.++.+.++++++++ ++|+.+...+ ...+..+.+.+|.||+.|... ..-++++.+. .
T Consensus 92 ~~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~ 169 (342)
T PRK12557 92 GK-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTEL 169 (342)
T ss_pred cH-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccC
Confidence 55 45678888999999999876 5555555533 344444455667777665532 1123455443 3
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q psy17416 272 TSERVITRTREIMTEIGMK 290 (290)
Q Consensus 272 t~~e~~~~~~~~~~~lgk~ 290 (290)
.+++.++++.++++.+|++
T Consensus 170 ~~~e~~e~v~~LL~a~G~~ 188 (342)
T PRK12557 170 ATEEQIEKCVELAESIGKE 188 (342)
T ss_pred CCHHHHHHHHHHHHHcCCE
Confidence 4899999999999999973
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.4e-10 Score=99.55 Aligned_cols=142 Identities=15% Similarity=0.229 Sum_probs=102.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+++.|++|.+||++++..+++.+ .| +..++++++++
T Consensus 5 IgviG---~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----------~g--------------~~~~~~~~e~~ 56 (296)
T PRK11559 5 VGFIG---LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA-----------AG--------------AETASTAKAVA 56 (296)
T ss_pred EEEEc---cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC--------------CeecCCHHHHH
Confidence 35665 7999999999999999999999999987665432 11 12356777788
Q ss_pred ccCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCCC-------
Q psy17416 194 EDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYFI------- 261 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~~------- 261 (290)
++||+||+|+|+...++..++ ..+.+.++++++++ ++|+.++. ++++.+..+ |.||.++|...
T Consensus 57 ~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~ 131 (296)
T PRK11559 57 EQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAID 131 (296)
T ss_pred hcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhh
Confidence 999999999999887776655 34777788999887 44455543 455554333 67776665332
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
..+.++.| ++++.++++.++++.+|++
T Consensus 132 g~l~i~~g--g~~~~~~~~~~~l~~~~~~ 158 (296)
T PRK11559 132 GTLSVMVG--GDKAIFDKYYDLMKAMAGS 158 (296)
T ss_pred CcEEEEEC--CCHHHHHHHHHHHHHhcCC
Confidence 23344444 2689999999999999873
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-09 Score=94.84 Aligned_cols=145 Identities=18% Similarity=0.099 Sum_probs=103.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||.+++..+.+.|++|..+|+++.. +.+.+ .|. ...++.++.+
T Consensus 39 I~IIG---~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~-----------~gv--------------~~~~~~~e~~ 89 (304)
T PLN02256 39 IGIVG---FGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAE-----------LGV--------------SFFRDPDDFC 89 (304)
T ss_pred EEEEe---eCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHH-----------cCC--------------eeeCCHHHHh
Confidence 45565 7999999999999999999999998631 11111 111 1235666654
Q ss_pred -ccCcEEEEccccchHHHHHHHHHH-hhhCCCCcEEEeCCC--CcCHHHHhccCCCCCcEEEeccCCCCCCC------Ce
Q psy17416 194 -EDAIFIQESVPEILQIKHQVYRAI-DIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVNPPYFI------PL 263 (290)
Q Consensus 194 -~~aDlVieavpe~~~~k~~~~~~l-~~~~~~~~ii~s~ts--~~~~~~la~~~~~~~r~ig~Hf~~p~~~~------~l 263 (290)
.++|+||.|+|.. .-.++++++ ...+++++++++-+| +..+..+...++...+|+|.||..++... .-
T Consensus 90 ~~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~ 167 (304)
T PLN02256 90 EEHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP 167 (304)
T ss_pred hCCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence 4799999999954 467888888 567889998875444 55666776666555589999998777542 12
Q ss_pred EEEecC----CCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPA----AWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~----~~t~~e~~~~~~~~~~~lgk 289 (290)
+-+++. +.++++.++.+.++|+.+|.
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa 197 (304)
T PLN02256 168 FVYDKVRIGDEGEREARCERFLDIFEEEGC 197 (304)
T ss_pred EEEecceecCCCCCHHHHHHHHHHHHHCCC
Confidence 222222 67899999999999999996
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7e-09 Score=96.27 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=94.1
Q ss_pred eeEEecccchhHHHHHHHHHH-cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~-~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
++++ +.|.||.++|..+.+ .|++|+.+|++.+ ...++++.+
T Consensus 8 ~IIG--l~GliGgslA~alk~~~~~~V~g~D~~d~------------------------------------~~~~~~~~v 49 (370)
T PRK08818 8 GIVG--SAGAYGRWLARFLRTRMQLEVIGHDPADP------------------------------------GSLDPATLL 49 (370)
T ss_pred EEEC--CCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------------------------ccCCHHHHh
Confidence 4454 239999999999986 4889999998410 123556678
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhh---CCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCC-----CCCeEE
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIF---MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY-----FIPLVE 265 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~---~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~-----~~~lvE 265 (290)
++||+||.|+| ...-.++++++.++ ++++++|+ ..+|.....+........+|+|.||+..+. ....+-
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVt-DVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~i 126 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWL-DVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMV 126 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEE-ECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEE
Confidence 99999999999 55577999999876 78999886 444444333322233335799999988764 345666
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++++ ..++.++.+.++++.+|.
T Consensus 127 ltp~--~~~~~~~~v~~l~~~~Ga 148 (370)
T PRK08818 127 VCEA--RLQHWSPWVQSLCSALQA 148 (370)
T ss_pred EeCC--CchhHHHHHHHHHHHcCC
Confidence 7776 345557899999999985
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.9e-09 Score=92.51 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=112.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcC----ceeEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG----YKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G----~~V~l~d~~~e-~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
-||++ +|.||..++..+.+.| ++|.+++++++ .++.... . . +++.+.+
T Consensus 6 I~~IG---~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----~------~--------------g~~~~~~ 58 (279)
T PRK07679 6 ISFLG---AGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----K------Y--------------GVKGTHN 58 (279)
T ss_pred EEEEC---ccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----h------c--------------CceEeCC
Confidence 46776 8999999999999888 78999999764 3332221 0 0 1223456
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCC-CCCCeEEEe
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP-YFIPLVEIV 267 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~-~~~~lvEvv 267 (290)
..+++.+||+||.|+|.+. -.+++.++.+.++++.+|+|-.++++++.+.+......++++.||-.|. ....+.-++
T Consensus 59 ~~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~ 136 (279)
T PRK07679 59 KKELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS 136 (279)
T ss_pred HHHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence 6677889999999999555 5677788888888889898888999998888776655679999984443 223455677
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 268 PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 268 ~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+++..+++..+.+.++++.+|+
T Consensus 137 ~~~~~~~~~~~~v~~l~~~~G~ 158 (279)
T PRK07679 137 PSKHATAEHIQTAKALFETIGL 158 (279)
T ss_pred eCCCCCHHHHHHHHHHHHhCCc
Confidence 8888899999999999999997
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=102.60 Aligned_cols=147 Identities=21% Similarity=0.245 Sum_probs=111.1
Q ss_pred eeeEEecccchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.||.+++..+...| .+|.+||++++.++.+.+ .|... ...+++.+
T Consensus 6 I~IIG---~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~-----------~g~~~------------~~~~~~~~ 59 (735)
T PRK14806 6 VVVIG---LGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS-----------LGVID------------RGEEDLAE 59 (735)
T ss_pred EEEEe---eCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH-----------CCCCC------------cccCCHHH
Confidence 35665 7999999999999888 489999999987765433 22211 12356677
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC---HHHHhccCC-CCCcEEEeccCCCCC--------
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---PSVLSEHST-HRSQFIVAHPVNPPY-------- 259 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~la~~~~-~~~r~ig~Hf~~p~~-------- 259 (290)
++.++|+||.|+|.+ ...++++++.+.++++++|. +.++.+ ...+.+.+. .+.||++.||+..+.
T Consensus 60 ~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~-d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~ 136 (735)
T PRK14806 60 AVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVT-DVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAAN 136 (735)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEE-EcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhh
Confidence 789999999999965 47899999999998988775 333333 656655543 357999999975332
Q ss_pred ----CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 260 ----FIPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 260 ----~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..+.+.++++..++++..+.+.++++.+|+
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 170 (735)
T PRK14806 137 ADLFRNHKVILTPLAETDPAALARVDRLWRAVGA 170 (735)
T ss_pred hHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 345678899999999999999999999996
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=92.73 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=98.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..++..+++.|++|.+||++++..++..+ .| +..+.++.+++
T Consensus 4 Ig~IG---lG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g--------------~~~~~s~~~~~ 55 (296)
T PRK15461 4 IAFIG---LGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG--------------ATPAASPAQAA 55 (296)
T ss_pred EEEEe---eCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC--------------CcccCCHHHHH
Confidence 36776 8999999999999999999999999988765433 11 12356777788
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCC-CcEEEeccCCCC---CCCCeE
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHR-SQFIVAHPVNPP---YFIPLV 264 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~-~r~ig~Hf~~p~---~~~~lv 264 (290)
++||+||.|+|.+..++..++. .+.+.++++++++ ++|+..+. +++..+... .+|+-.-....+ ....++
T Consensus 56 ~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~ 134 (296)
T PRK15461 56 AGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLL 134 (296)
T ss_pred hcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEE
Confidence 9999999999998776655542 4566678888775 45555543 444444322 233322111111 122355
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-++.| +++.+++++.+++.+|++
T Consensus 135 ~~~gg---~~~~~~~~~p~l~~~g~~ 157 (296)
T PRK15461 135 LLAGG---TAEQVERATPILMAMGNE 157 (296)
T ss_pred EEECC---CHHHHHHHHHHHHHHcCC
Confidence 55555 889999999999999973
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=98.11 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..++++|++|.+|.++++..++.....++ ..+++......++..++|+.+++++||+|+.
T Consensus 9 aGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N-----------~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~ 77 (329)
T COG0240 9 AGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETREN-----------PKYLPGILLPPNLKATTDLAEALDGADIIVI 77 (329)
T ss_pred CChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcC-----------ccccCCccCCcccccccCHHHHHhcCCEEEE
Confidence 69999999999999999999999999998875553222 2334555566889999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
++|... -+++++++...+++++++++.++++..
T Consensus 78 avPs~~--~r~v~~~l~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 78 AVPSQA--LREVLRQLKPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred ECChHH--HHHHHHHHhhhccCCCeEEEEeccccC
Confidence 999666 889999998899999999988877765
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=87.27 Aligned_cols=100 Identities=31% Similarity=0.341 Sum_probs=77.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||.++|..++..|++|.+|+++++.++...+..+ ....++......++..++|++++++++|++|.
T Consensus 7 aG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-----------n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii 75 (157)
T PF01210_consen 7 AGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-----------NPKYLPGIKLPENIKATTDLEEALEDADIIII 75 (157)
T ss_dssp SSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-----------ETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred cCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-----------CCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence 6899999999999999999999999987766554211 11223333445678889999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 234 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 234 (290)
++|... -+++++++.++++++.++++.++++
T Consensus 76 avPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 76 AVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 999777 7899999999999999999988888
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-09 Score=97.88 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=91.6
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCC--CChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~--~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
+.++++++||+||+|+|++. ..++++++.. +++++|++.++|. .++..+++... .+|+|.||++++....+.+
T Consensus 135 ~~~~~~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~ 209 (374)
T PRK11199 135 RAEDILADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAK 209 (374)
T ss_pred hHHHHHhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCC
Confidence 56778899999999999996 5889999999 8999999999884 66778887654 3699999999998777766
Q ss_pred --EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceee
Q psy17416 81 --IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 116 (290)
Q Consensus 81 --iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf 116 (290)
++..+.|+++.++.+.+++..+|..++.+..+....
T Consensus 210 ~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~ 247 (374)
T PRK11199 210 QVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQ 247 (374)
T ss_pred CEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHH
Confidence 777888899999999999999999998875444333
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=91.49 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=95.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..++..+.+.|++|.+||++++..+...+ .| ...++++.+++++||+||.
T Consensus 4 lG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g--------------~~~~~s~~~~~~~advVil 58 (288)
T TIGR01692 4 LGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA-----------AG--------------AQAAASPAEAAEGADRVIT 58 (288)
T ss_pred ccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------cC--------------CeecCCHHHHHhcCCEEEE
Confidence 6899999999999999999999999987765433 11 1235677888999999999
Q ss_pred ccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCC--------CCeEEEec
Q psy17416 202 SVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF--------IPLVEIVP 268 (290)
Q Consensus 202 avpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~--------~~lvEvv~ 268 (290)
|+|.+..++.-++ .++.+.++++.+++ ++|+++++ ++++.+... |.+|...|.. ..+.-++.
T Consensus 59 ~vp~~~~~~~v~~g~~~l~~~~~~g~~vi-d~st~~p~~~~~~~~~~~~~----g~~~vdaPv~Gg~~~a~~g~l~~~~g 133 (288)
T TIGR01692 59 MLPAGQHVISVYSGDEGILPKVAKGSLLI-DCSTIDPDSARKLAELAAAH----GAVFMDAPVSGGVGGARAGTLTFMVG 133 (288)
T ss_pred eCCChHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEECCCCCCHHHHhhCcEEEEEC
Confidence 9998665543332 56777788888776 44466654 333333221 4555443322 33555666
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q psy17416 269 AAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
| +++.++++..+++.+|++
T Consensus 134 g---~~~~~~~~~~~l~~~g~~ 152 (288)
T TIGR01692 134 G---VAEEFAAAEPVLGPMGRN 152 (288)
T ss_pred C---CHHHHHHHHHHHHHhcCC
Confidence 6 678999999999999873
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=88.12 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=101.9
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-.-||++ +|.||..|+..+...||.|++||++....+...+ .|. +...++.|
T Consensus 36 ~~iGFIG---LG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~-----------~Ga--------------~v~~sPae 87 (327)
T KOG0409|consen 36 TRIGFIG---LGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQE-----------AGA--------------RVANSPAE 87 (327)
T ss_pred ceeeEEe---eccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHH-----------hch--------------hhhCCHHH
Confidence 3468888 8999999999999999999999999887655444 111 23567888
Q ss_pred hcccCcEEEEccccchHHHHHHHHH--HhhhCCCCcEEEeCCCCcC---HHHHhccCCCCCcEEEeccCCCC--------
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPP-------- 258 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~--l~~~~~~~~ii~s~ts~~~---~~~la~~~~~~~r~ig~Hf~~p~-------- 258 (290)
..++||+||-++|.+.++|..++.. +.+..+++.......|++. ..++++..... +..|...|
T Consensus 88 Vae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A 163 (327)
T KOG0409|consen 88 VAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGA 163 (327)
T ss_pred HHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhh
Confidence 8999999999999999998888864 3344445443322333333 34777766544 33343333
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 259 YFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 259 ~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
....|..... .++++++++..+++.+||+
T Consensus 164 ~~G~Ltimag---Gde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 164 EEGTLTIMAG---GDEALFEAASPVFKLMGKN 192 (327)
T ss_pred hcCeEEEEec---CcHHHHHHHHHHHHHhcce
Confidence 2233555555 5999999999999999985
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-08 Score=94.77 Aligned_cols=150 Identities=11% Similarity=0.153 Sum_probs=99.7
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..+|..+++.|++|.+||++++..+...+.... .|. ..+....++++++
T Consensus 9 IG~IG---LG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~-------~Ga-----------~~~~~a~s~~e~v 67 (493)
T PLN02350 9 IGLAG---LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EGN-----------LPLYGFKDPEDFV 67 (493)
T ss_pred EEEEe---eHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhh-------cCC-----------cccccCCCHHHHH
Confidence 58887 89999999999999999999999999887765541000 011 1123456777766
Q ss_pred cc---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEE-eCCCCcC-HHHHhccCCCC-CcEEEeccCCC---CCCCCeE
Q psy17416 194 ED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILS-SSTSSFL-PSVLSEHSTHR-SQFIVAHPVNP---PYFIPLV 264 (290)
Q Consensus 194 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~-~~~la~~~~~~-~r~ig~Hf~~p---~~~~~lv 264 (290)
+. +|+||.++|..-.+.. ++..+.+.+.++.|++ .+|++.. ..++++.+... .+|+++--... ....+ .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~ 145 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-S 145 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-e
Confidence 55 9999999998887755 4477888888888887 3333322 22444444322 33444333211 11233 3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-++.| ++++++++..+++.++.
T Consensus 146 im~GG---~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 146 LMPGG---SFEAYKNIEDILEKVAA 167 (493)
T ss_pred EEecC---CHHHHHHHHHHHHHHhh
Confidence 34555 89999999999999884
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-07 Score=82.74 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=110.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc----eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~----~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
-||++ +|.||.+++..+.+.|+ +|.++|++++.++++.+. .| +..+++.
T Consensus 5 IgfIG---~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g--------------~~~~~~~ 57 (272)
T PRK12491 5 IGFIG---CGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG--------------ITITTNN 57 (272)
T ss_pred EEEEC---ccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC--------------cEEeCCc
Confidence 47887 89999999999998875 699999999876654430 11 1234566
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~ 268 (290)
.+.+.+||+||.|++. ..-.++++++.+.++++++++|-..+++++.+.+.++.+.+++=.=|--|..... ..=+.+
T Consensus 58 ~e~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~ 135 (272)
T PRK12491 58 NEVANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCF 135 (272)
T ss_pred HHHHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEe
Confidence 6678899999999994 4577888999988889999999999999999998876444444333333332222 223467
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
++..+++..+.+..+|..+|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~ 156 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQ 156 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCC
Confidence 788899999999999999997
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-08 Score=86.39 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=94.7
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..++..+.+.|++|.+||+++. .++.. +.| .....+..+++
T Consensus 3 Ig~IG---lG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~-----------~~g--------------~~~~~s~~~~~ 53 (292)
T PRK15059 3 LGFIG---LGIMGTPMAINLARAGHQLHVTTIGPV-ADELL-----------SLG--------------AVSVETARQVT 53 (292)
T ss_pred EEEEc---cCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHH-----------HcC--------------CeecCCHHHHH
Confidence 36776 899999999999999999999999873 22211 111 12245666778
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCC-CCcEEEeccCCCC----CCCCe
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVNPP----YFIPL 263 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~-~~r~ig~Hf~~p~----~~~~l 263 (290)
++||+||.|+|.+..++..++. .+.+.+.++.+++ ++|+.++. ++++.+.. -.+|+- +|.... ....+
T Consensus 54 ~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l 131 (292)
T PRK15059 54 EASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTL 131 (292)
T ss_pred hcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcE
Confidence 8999999999988777665554 2555567788775 44544444 44444432 233444 232211 12335
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.-++.| +++.+++++.+++.+|++
T Consensus 132 ~~~~gG---~~~~~~~~~p~l~~~g~~ 155 (292)
T PRK15059 132 SIMVGG---DEAVFERVKPLFELLGKN 155 (292)
T ss_pred EEEEcC---CHHHHHHHHHHHHHHcCC
Confidence 555655 799999999999999973
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-07 Score=82.36 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=96.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
||++ +|.||..++..+.+.|++|.+||++++..++..+ .|.... ....++.+.+.
T Consensus 4 g~IG---lG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~~-----------~s~~~~~~~~~ 58 (298)
T TIGR00872 4 GLIG---LGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTGV-----------ANLRELSQRLS 58 (298)
T ss_pred EEEc---chHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCccc-----------CCHHHHHhhcC
Confidence 5666 7999999999999999999999999987765543 121100 00123333456
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccCC-CCCcEEEeccCCCCC--CCCeEEEecC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHST-HRSQFIVAHPVNPPY--FIPLVEIVPA 269 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~~-~~~r~ig~Hf~~p~~--~~~lvEvv~~ 269 (290)
++|+|+.|+|.. .-++++.++.+.++++.+++..+++. ...+++..+. ...+|+..+....+. ...+.-++.|
T Consensus 59 ~~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG 136 (298)
T TIGR00872 59 APRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG 136 (298)
T ss_pred CCCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC
Confidence 799999999987 35677889999999888887544443 3334444333 233555555432221 0113335555
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q psy17416 270 AWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 270 ~~t~~e~~~~~~~~~~~lgk 289 (290)
+++.++++..+++.+++
T Consensus 137 ---~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 137 ---DGEAFARAEPLFADVAP 153 (298)
T ss_pred ---CHHHHHHHHHHHHHhcC
Confidence 79999999999999875
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=91.34 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=99.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+++.|++|.+||++++..+...+...+ .|. .+..++++++++
T Consensus 4 IgvIG---LG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g~------------~i~~~~s~~e~v 61 (470)
T PTZ00142 4 IGLIG---LAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKE-------GNT------------RVKGYHTLEELV 61 (470)
T ss_pred EEEEe---EhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhh-------cCC------------cceecCCHHHHH
Confidence 46776 89999999999999999999999999988766542111 010 233467787776
Q ss_pred c---cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCCCCcEEEeccCCCCCC--------
Q psy17416 194 E---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPPYF-------- 260 (290)
Q Consensus 194 ~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~~~r~ig~Hf~~p~~~-------- 260 (290)
+ ++|+||.++|..-.+ .+++.++.+.+.++.||+..+++...+ ..+..+... |.||...|..
T Consensus 62 ~~l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~----Gi~fldapVSGG~~gA~~ 136 (470)
T PTZ00142 62 NSLKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK----GILYLGMGVSGGEEGARY 136 (470)
T ss_pred hcCCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEcCCCCCCHHHHhc
Confidence 5 589999998876655 556688999999999988555444333 333333222 5555443311
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.+ .-++.| ++++++++..+++.+++
T Consensus 137 G~-~lm~GG---~~~a~~~~~piL~~ia~ 161 (470)
T PTZ00142 137 GP-SLMPGG---NKEAYDHVKDILEKCSA 161 (470)
T ss_pred CC-EEEEeC---CHHHHHHHHHHHHHHhh
Confidence 22 224445 88999999999999875
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=84.15 Aligned_cols=140 Identities=20% Similarity=0.155 Sum_probs=93.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..++..+.+.|++|.+||++++..+.+.+ .| ...+.++++.+
T Consensus 3 Ig~IG---lG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g--------------~~~~~s~~~~~ 54 (299)
T PRK12490 3 LGLIG---LGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-----------LG--------------ITARHSLEELV 54 (299)
T ss_pred EEEEc---ccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CC--------------CeecCCHHHHH
Confidence 36776 8999999999999999999999999977655432 11 12345666666
Q ss_pred cc---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC-CC-CcCHHHHhccCCCCCcEEEeccCCCCCCC-------
Q psy17416 194 ED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS-TS-SFLPSVLSEHSTHRSQFIVAHPVNPPYFI------- 261 (290)
Q Consensus 194 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~-ts-~~~~~~la~~~~~~~r~ig~Hf~~p~~~~------- 261 (290)
++ +|+||.|+|.+..+ +.++.++.+.++++.+++.. |+ .....++++.+... |.+|...|...
T Consensus 55 ~~~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~ 129 (299)
T PRK12490 55 SKLEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRN 129 (299)
T ss_pred HhCCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhc
Confidence 55 69999999987444 45667788888888877632 22 22333555544322 34444322111
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
...-++.| +++++++++.+++.+|+
T Consensus 130 g~~~~~gG---~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 130 GYCLMVGG---DKEIYDRLEPVFKALAP 154 (299)
T ss_pred CCeEEecC---CHHHHHHHHHHHHHhcC
Confidence 11234555 78999999999999985
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-08 Score=86.29 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=98.2
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHH--HHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~--~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~- 75 (290)
+++++++++||+||.|+|++..+|.-+|.. +...+++++++. |+|+.++. ++++.++.+ |+||..+|-.
T Consensus 47 ~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g 121 (291)
T TIGR01505 47 ETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKEK----GIDYLDAPVSG 121 (291)
T ss_pred CCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCCEEecCCCC
Confidence 567889999999999999999998887643 556678888887 45555554 677766432 7888775421
Q ss_pred ------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee---eEEecccchh----HHHHHHHHHHcCceeEE
Q psy17416 76 ------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG---FALNRIHGLI----GQAWAMIFASAGYKVSL 142 (290)
Q Consensus 76 ------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g---f~~nri~G~~----g~~ia~~~~~~G~~V~l 142 (290)
...++++.| .++++++.+..+++.+|+.++.+....+| ++.|+++..+ ..++.....+.|
T Consensus 122 ~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G----- 194 (291)
T TIGR01505 122 GEIGAIEGTLSIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG----- 194 (291)
T ss_pred CHHHHhcCCEEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 234577777 47899999999999999999988444555 3667665433 222333333444
Q ss_pred ecCCHHHHHHHHH
Q psy17416 143 YDVLSEQIENAKN 155 (290)
Q Consensus 143 ~d~~~e~l~~a~~ 155 (290)
.+++.+.+++.
T Consensus 195 --id~~~~~~~l~ 205 (291)
T TIGR01505 195 --VDPVRVRQALR 205 (291)
T ss_pred --CCHHHHHHHHh
Confidence 77888777765
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-08 Score=86.81 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..+|..++..|+ +|.++|++++.. ++... . +.... .......+++.++|++ ++++||+||
T Consensus 6 aG~vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~--d-l~~~~---------~~~~~~~~I~~t~d~~-~l~dADiVI 71 (300)
T cd01339 6 AGNVGATLAQLLALKELGDVVLLDIVEGLP-QGKAL--D-ISQAA---------PILGSDTKVTGTNDYE-DIAGSDVVV 71 (300)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHH--H-HHHhh---------hhcCCCeEEEEcCCHH-HhCCCCEEE
Confidence 68999999999998876 999999997643 33321 1 11110 0011124666677776 589999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCcE-EEeCCCCcCHHHHhccCCC-CCcEEEec
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNTI-LSSSTSSFLPSVLSEHSTH-RSQFIVAH 253 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~i-i~s~ts~~~~~~la~~~~~-~~r~ig~H 253 (290)
+++ +++.++++++++++.+.++++.+ ++||.+.+....+.+.... |.|++|+-
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 866 88999999999999999988874 4588887777777766664 46888776
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=89.60 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=94.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh--
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-- 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-- 192 (290)
||++ +|.||..+|..+++.|++|.+||++++..++..+... .| ..+....++++.
T Consensus 3 G~IG---LG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~--------~g------------~~~~~~~s~~e~v~ 59 (467)
T TIGR00873 3 GVIG---LAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA--------KG------------KKIVGAYSIEEFVQ 59 (467)
T ss_pred EEEe---eHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhcc--------CC------------CCceecCCHHHHHh
Confidence 6776 8999999999999999999999999998776554100 00 011223444443
Q ss_pred -cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCcEEEeccCCCCC---CCCeEE
Q psy17416 193 -LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY---FIPLVE 265 (290)
Q Consensus 193 -l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r~ig~Hf~~p~~---~~~lvE 265 (290)
+.++|+||.++|....+ .+++.++.+.++++.+|+..+++...+ ..+..+. +-.+|+++.....+. ..+ .-
T Consensus 60 ~l~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~i 137 (467)
T TIGR00873 60 SLERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SI 137 (467)
T ss_pred hcCCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cC
Confidence 35799999999986555 457788989999998887444333222 3333332 223455554422211 111 11
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++. .++++++++..+++.++.
T Consensus 138 m~G---G~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 138 MPG---GSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred CCC---CCHHHHHHHHHHHHHHhh
Confidence 233 388999999999999875
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.7e-07 Score=81.53 Aligned_cols=143 Identities=18% Similarity=0.139 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHH-HHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIEN-AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~-a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
-|..+|..+.+.||+|.+||++++..+. ..+.+ .+. +....++..+++++||+||.|+
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~L-------aea--------------GA~~AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKV-------EDA--------------GVKVVSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHH-------HHC--------------CCeecCCHHHHHhCCCEEEEec
Confidence 3788999999999999999999876532 11111 111 1234567788899999999999
Q ss_pred ccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCC------CC-CcEEEeccCCCCCC-CCeEEEecC------
Q psy17416 204 PEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST------HR-SQFIVAHPVNPPYF-IPLVEIVPA------ 269 (290)
Q Consensus 204 pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~------~~-~r~ig~Hf~~p~~~-~~lvEvv~~------ 269 (290)
|..-.+ ++++..+.+.++++++++ ++|++++..+...+. +. -.+..+||-.-|-. ..-.=++.+
T Consensus 90 Pd~aaV-~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~ 167 (341)
T TIGR01724 90 PFGKGT-FSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGK 167 (341)
T ss_pred CCHHHH-HHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeecccccccc
Confidence 966555 445577888899999885 677777776554332 22 35667787543321 111112222
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q psy17416 270 AWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 270 ~~t~~e~~~~~~~~~~~lgk~ 290 (290)
...++|.++++.++.+..||+
T Consensus 168 ~~A~ee~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 168 EMATEEQISKCVELAKSTGKK 188 (341)
T ss_pred ccCCHHHHHHHHHHHHHhCCC
Confidence 355899999999999999984
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-07 Score=81.81 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=95.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
++++ +|.||..++..+++.|++|.+|+++++.++...+. +.............++..+++++++++
T Consensus 5 ~iiG---~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 5 AVLG---AGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD-----------RENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEC---CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------CcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 4555 79999999999999999999999999877654441 110000011111124455678877788
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-------HHhccCCCCCcEEEeccCCCCC-------C
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-------VLSEHSTHRSQFIVAHPVNPPY-------F 260 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-------~la~~~~~~~r~ig~Hf~~p~~-------~ 260 (290)
+||+||.|+|.. ....++.++.+.+++++++++.++++..+ .+.+......... -...|.. .
T Consensus 71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~--~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIA--VLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceE--EEECccHHHHHHcCC
Confidence 999999999974 47788899999989999887655444432 2222222100110 0111211 1
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lg 288 (290)
..++++.. .+.+.++++.++++..|
T Consensus 147 ~~~~~~~~---~~~~~~~~~~~~l~~~~ 171 (325)
T PRK00094 147 PTAVVIAS---TDEELAERVQELFHSPY 171 (325)
T ss_pred CcEEEEEe---CCHHHHHHHHHHhCCCC
Confidence 12344433 37888999999998766
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.5e-07 Score=88.29 Aligned_cols=144 Identities=16% Similarity=0.057 Sum_probs=94.6
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+|+ .|.||..++..+.+.|++|..||++... +.+.+ .| +...+++++.+
T Consensus 55 IgIIG---~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~-----------~G--------------v~~~~d~~e~~ 105 (667)
T PLN02712 55 IAIIG---FGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARS-----------LG--------------VSFFLDPHDLC 105 (667)
T ss_pred EEEEc---cCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHH-----------cC--------------CEEeCCHHHHh
Confidence 45565 7999999999999999999999998542 22211 11 12245666644
Q ss_pred -ccCcEEEEccccchHHHHHHHHHHh-hhCCCCcEEEeCCCCcC---HHHHhccCCCCCcEEEeccCCCCCCC-----Ce
Q psy17416 194 -EDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPPYFI-----PL 263 (290)
Q Consensus 194 -~~aDlVieavpe~~~~k~~~~~~l~-~~~~~~~ii~s~ts~~~---~~~la~~~~~~~r~ig~Hf~~p~~~~-----~l 263 (290)
.++|+||.|+|. ..-..++.++. +.++++++|+.- ++.. +..+...++...+|+|+||+..+... ..
T Consensus 106 ~~~aDvViLavP~--~~~~~vl~~l~~~~l~~g~iVvDv-~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~ 182 (667)
T PLN02712 106 ERHPDVILLCTSI--ISTENVLKSLPLQRLKRNTLFVDV-LSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGL 182 (667)
T ss_pred hcCCCEEEEcCCH--HHHHHHHHhhhhhcCCCCeEEEEC-CCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccC
Confidence 569999999994 45678888875 568889988633 3333 33444444433479999997776411 11
Q ss_pred EEEe-----cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIV-----PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv-----~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..+. +.+....+.++.+.++|+.+|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa 213 (667)
T PLN02712 183 RFVYEKVRIGNEELRVSRCKSFLEVFEREGC 213 (667)
T ss_pred cEEEeeccCCCccccHHHHHHHHHHHHHcCC
Confidence 1222 2333345667888899999985
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-07 Score=97.97 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=104.1
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..||..+.+.|++|.+||++++..++..+ .| ....+++.++.
T Consensus 7 IGfIG---LG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G--------------a~~~~s~~e~a 58 (1378)
T PLN02858 7 VGFVG---LDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE-----------LG--------------GHRCDSPAEAA 58 (1378)
T ss_pred EEEEc---hhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC--------------CeecCCHHHHH
Confidence 58887 8999999999999999999999999987766544 11 12357788888
Q ss_pred ccCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEE--eccCCCCC-------
Q psy17416 194 EDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIV--AHPVNPPY------- 259 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig--~Hf~~p~~------- 259 (290)
++||+||.|+|..-.++..++ ..+.+.++++.+++ +.|+++++ ++++.+... | .+|...|.
T Consensus 59 ~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A 133 (1378)
T PLN02858 59 KDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDL 133 (1378)
T ss_pred hcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHH
Confidence 999999999999988876665 35777788888775 44444444 454444322 3 44543332
Q ss_pred -CCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 260 -FIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 260 -~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
...|.-++.| +++.++++..+++.+|++
T Consensus 134 ~~G~L~imvGG---~~~~~~~~~p~l~~~g~~ 162 (1378)
T PLN02858 134 LNGKLMIIASG---RSDAITRAQPFLSAMCQK 162 (1378)
T ss_pred hcCCeEEEEcC---CHHHHHHHHHHHHHhcCc
Confidence 2447777777 889999999999999973
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=77.94 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=102.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCc----eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~----~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
||++ .|.||..++..+.+.|+ +|.+++++++..++..+ . . .++..+.+..
T Consensus 4 ~iIG---~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~----~------~-------------~g~~~~~~~~ 57 (273)
T PRK07680 4 GFIG---TGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKE----R------Y-------------PGIHVAKTIE 57 (273)
T ss_pred EEEC---ccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHH----H------c-------------CCeEEECCHH
Confidence 5666 79999999999988883 79999999977644322 0 0 0123355666
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCC-CCeEEEecC
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPA 269 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~-~~lvEvv~~ 269 (290)
+.+.++|+||.|+|... -.++++++.+.++++.+|++-+++++++.+...+.. +.+-.+|-.+... .-..=++.+
T Consensus 58 ~~~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~--~~~r~~p~~~~~~~~G~t~~~~g 133 (273)
T PRK07680 58 EVISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPC--QVARIIPSITNRALSGASLFTFG 133 (273)
T ss_pred HHHHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC--CEEEECCChHHHHhhccEEEeeC
Confidence 77889999999998444 568888888888888888888888998888876642 3333333111100 112223456
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q psy17416 270 AWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 270 ~~t~~e~~~~~~~~~~~lgk 289 (290)
...+++..+.+.++++.+|+
T Consensus 134 ~~~~~~~~~~~~~ll~~~G~ 153 (273)
T PRK07680 134 SRCSEEDQQKLERLFSNIST 153 (273)
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 67788889999999999985
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.1e-07 Score=80.69 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=92.7
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
||++ +|.||..++..+.+.|++|.+||++++..++..+ .| ....+++++.++
T Consensus 4 g~IG---lG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g--------------~~~~~~~~e~~~ 55 (301)
T PRK09599 4 GMIG---LGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-----------EG--------------ATGADSLEELVA 55 (301)
T ss_pred EEEc---ccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CC--------------CeecCCHHHHHh
Confidence 5666 8999999999999999999999999987765433 11 123456666555
Q ss_pred c---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCCCCcEEEeccCCCCCCC-------C
Q psy17416 195 D---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPYFI-------P 262 (290)
Q Consensus 195 ~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~~~r~ig~Hf~~p~~~~-------~ 262 (290)
. +|+||.++|....+ .+++..+.+.++++.+++..+++.+ ...++..+... |.+|...|... .
T Consensus 56 ~~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g 130 (301)
T PRK09599 56 KLPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERG 130 (301)
T ss_pred hcCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcC
Confidence 4 69999999976443 4566778888888887774332222 22444444322 44444332111 1
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+.-++.| +++++++++.+++.+|+
T Consensus 131 ~~~~~gG---~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 131 YCLMIGG---DKEAVERLEPIFKALAP 154 (301)
T ss_pred CeEEecC---CHHHHHHHHHHHHHHcc
Confidence 2333444 89999999999999986
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=82.95 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=83.2
Q ss_pred hhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCC-----------
Q psy17416 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY----------- 74 (290)
Q Consensus 6 ~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~----------- 74 (290)
+++++||+||.|+|++... ++++++...+++++++ +++++.+...+.....++.+|+|+|++....
T Consensus 53 ~~~~~aDlVilavp~~~~~--~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~l 129 (279)
T PRK07417 53 SLLKDCDLVILALPIGLLL--PPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGL 129 (279)
T ss_pred hHhcCCCEEEEcCCHHHHH--HHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHH
Confidence 4689999999999988765 4789999999999888 7777788887777666667899999876543
Q ss_pred -CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 75 -FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 75 -~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
.-+..-+++++.++++.++.+.++++.+|+.++.+.
T Consensus 130 f~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 130 FKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred hCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 123344788899999999999999999999998774
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=85.79 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=88.8
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..+|..++..|+ ++.++|++++... +. .++..... .......++..++|++ ++++||+||
T Consensus 14 aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~-----~ld~~~~~-------~~~~~~~~I~~~~d~~-~l~~aDiVI 79 (321)
T PTZ00082 14 SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GK-----ALDISHSN-------VIAGSNSKVIGTNNYE-DIAGSDVVI 79 (321)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HH-----HHHHHhhh-------hccCCCeEEEECCCHH-HhCCCCEEE
Confidence 79999999999999996 9999999998642 21 11111110 0011123677678886 689999999
Q ss_pred Ecc-------------------ccchHHHHHHHHHHhhhCCCC-cEEEeCCCCcCHHHHhccCCCC-CcEEEec
Q psy17416 201 ESV-------------------PEILQIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQFIVAH 253 (290)
Q Consensus 201 eav-------------------pe~~~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~la~~~~~~-~r~ig~H 253 (290)
++. +++..+++++++++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 955 778999999999999999775 5566999999888888777765 8999998
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=87.74 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=65.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH----HHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH----TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aD 197 (290)
+|.||..+|..++. |++|++||++++.+++..+.... .++++... ...+++.+++..+++++||
T Consensus 8 lGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~-----------~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 8 TGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS-----------DKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred CCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh-----------CCCcEEEecchhhhhcCCC
Confidence 79999999988875 99999999999998877652211 11111100 1123445566777789999
Q ss_pred EEEEccccchHHH---------HHHHHHHhhhCCCCcEEE
Q psy17416 198 FIQESVPEILQIK---------HQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 198 lVieavpe~~~~k---------~~~~~~l~~~~~~~~ii~ 228 (290)
+||+|+|++++.| .++++.+.+ ++++.+++
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV 114 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV 114 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE
Confidence 9999999986544 355567776 57777765
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=80.57 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=97.0
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hhh------hcccccCC
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EEQ------FGLISGTP 187 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~~------~~~i~~~~ 187 (290)
|+++ +|.||..+|..+++.|++|.+||++++.++...+ |...-..+. .+. .++++.++
T Consensus 4 ~vIG---lG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~------------g~~~~~e~~l~~~~~~~~~~g~l~~~~ 68 (411)
T TIGR03026 4 AVIG---LGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK------------GKSPIYEPGLDELLAKALAAGRLRATT 68 (411)
T ss_pred EEEC---CCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc------------CCCCCCCCCHHHHHHHhhhcCCeEEEC
Confidence 4555 7999999999999999999999999988765432 110000000 111 13466778
Q ss_pred chHhhcccCcEEEEccccchH--------HHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccC-C-------CCCc
Q psy17416 188 VLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHS-T-------HRSQ 248 (290)
Q Consensus 188 ~l~~~l~~aDlVieavpe~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~-~-------~~~r 248 (290)
++.+++++||+||.|+|.... ......+.+.+.++++++++. .|+.++. ++.... . ..+-
T Consensus 69 ~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~ 147 (411)
T TIGR03026 69 DYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDF 147 (411)
T ss_pred CHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCc
Confidence 888889999999999998743 345666788888899987762 3333222 332111 1 1122
Q ss_pred EEEeccCC--CCCCCC-eE---EEecCCCCCHHHHHHHHHHHHHcC
Q psy17416 249 FIVAHPVN--PPYFIP-LV---EIVPAAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 249 ~ig~Hf~~--p~~~~~-lv---Evv~~~~t~~e~~~~~~~~~~~lg 288 (290)
.+..+|-. +-.... +. -++.| .+++..+++.++++.++
T Consensus 148 ~v~~~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~ 191 (411)
T TIGR03026 148 YLAYNPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPII 191 (411)
T ss_pred eEEECCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhc
Confidence 34555411 111000 00 13333 48999999999999986
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-06 Score=74.99 Aligned_cols=146 Identities=12% Similarity=0.047 Sum_probs=103.2
Q ss_pred eeEEecccchhHHHHHHHHHHcC----ceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG----YKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G----~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
||++ .|.||..++..+.+.| ++|.+|+++++. .+.... . . .....+.+.
T Consensus 5 ~iIG---~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~----~------~-------------~~~~~~~~~ 58 (277)
T PRK06928 5 GFIG---YGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD----K------Y-------------PTVELADNE 58 (277)
T ss_pred EEEC---ccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH----H------c-------------CCeEEeCCH
Confidence 5665 7999999999999888 689999987542 211111 0 0 011234566
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~ 268 (290)
.+++.++|+||.|+|... -.++++++.+.++++++|+|-..+++.+++.+.++. .+++=.=|--|..... ..=+++
T Consensus 59 ~e~~~~aDvVilavpp~~--~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVPPLA--VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 677889999999999444 668889998888888888899999999999887643 2343333322222221 233566
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
++..+++..+.+..+++.+|+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~ 156 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSH 156 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 778899999999999999997
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=81.99 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=86.5
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..++..| .++.++|++++..+ +.. ++.... ........+++.+++++ ++++||+||
T Consensus 13 aG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-----lDl~~~-------~~~~~~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 13 AGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-----LDLKHF-------STLVGSNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-----HHHhhh-------ccccCCCeEEEeCCCHH-HhCCCCEEE
Confidence 6999999999999888 58999999987643 222 111000 00011123566667888 689999999
Q ss_pred Ecc--ccch------------HHHHHHHHHHhhhCCCC-cEEEeCCCCcCHHHHhccCCCC-CcEEEec
Q psy17416 201 ESV--PEIL------------QIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQFIVAH 253 (290)
Q Consensus 201 eav--pe~~------------~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~la~~~~~~-~r~ig~H 253 (290)
++. |++. .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 999 7766 88999999999998777 4555888888777777766666 8999888
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-07 Score=81.81 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=77.7
Q ss_pred cchhHHHHHHHHHHcC--------ceeEEecC-----CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 122 HGLIGQAWAMIFASAG--------YKVSLYDV-----LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--------~~V~l~d~-----~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
+|.||.++|..++..| ++|.+|++ +++..+...+..+ -..+++...+.++++.++|
T Consensus 7 aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~-----------n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 7 SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHE-----------NVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCC-----------CccccCCCcCCCCeEEECC
Confidence 6999999999999989 99999998 3333222222111 1112223334567888999
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 237 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~ 237 (290)
+++++.+||+||.|+|.+. -+++++++.+.++++.+++|.++++..+
T Consensus 76 l~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 76 LVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 9999999999999999666 7899999999999999888877777654
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=80.57 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=89.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
++++ +|.||..+|..+++.|++|.+|+++++..+...+..++. .. ++......++..+++++++++
T Consensus 8 ~iIG---~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--------~~---~~g~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 8 AVLG---AGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--------EY---LPGVALPAELYPTADPEEALA 73 (328)
T ss_pred EEEC---cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--------cc---CCCCcCCCCeEEeCCHHHHHc
Confidence 4554 799999999999999999999999988765544321111 00 001111223555678888889
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC-----HHHHhccCCC----CCcEEEe-ccCCCCC-C-CC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL-----PSVLSEHSTH----RSQFIVA-HPVNPPY-F-IP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-----~~~la~~~~~----~~r~ig~-Hf~~p~~-~-~~ 262 (290)
++|+||.|+|+.. -++++ +.+++++++++.++++. ...++..+.. ...+++. .+..... . ..
T Consensus 74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~ 147 (328)
T PRK14618 74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPA 147 (328)
T ss_pred CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCe
Confidence 9999999999774 23444 45667777776666554 3344443321 1112211 0000000 0 11
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+..+.. .+++.++++..+++..|.
T Consensus 148 ~~~~~~---~~~~~~~~v~~ll~~~~~ 171 (328)
T PRK14618 148 ATVVAS---PEPGLARRVQAAFSGPSF 171 (328)
T ss_pred EEEEEe---CCHHHHHHHHHHhCCCcE
Confidence 222332 378889999999987764
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=84.24 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc---CcEEEE
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQE 201 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~---aDlVie 201 (290)
||..+|..++++|++|.+||++++..+...+. .|. + .++....++++.++. +|+||.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~--~--------~g~~~~~s~~e~v~~l~~~~~Ii~ 60 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK--G--------KKIVPAYTLEEFVASLEKPRKILL 60 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC--C--------CCeEeeCCHHHHHhhCCCCCEEEE
Confidence 78999999999999999999999987765441 010 0 123456778877664 899999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEe-CCCCcCH-HHHhccCCCC-CcEEEeccCCCC---CCCCeEEEecCCCCCHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSS-STSSFLP-SVLSEHSTHR-SQFIVAHPVNPP---YFIPLVEIVPAAWTSER 275 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s-~ts~~~~-~~la~~~~~~-~r~ig~Hf~~p~---~~~~lvEvv~~~~t~~e 275 (290)
++|..-.++ +++..|.+.+.++.||+- +|+...- .+.+..+... .+|+++-....+ ...+ .-++.| +++
T Consensus 61 mv~~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG---~~~ 135 (459)
T PRK09287 61 MVKAGAPVD-AVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGG---QKE 135 (459)
T ss_pred ECCCchHHH-HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeC---CHH
Confidence 999887764 455788889999988873 3333332 2444444322 234333322111 1122 224445 799
Q ss_pred HHHHHHHHHHHcCC
Q psy17416 276 VITRTREIMTEIGM 289 (290)
Q Consensus 276 ~~~~~~~~~~~lgk 289 (290)
+++++..+++.++.
T Consensus 136 a~~~~~piL~~ia~ 149 (459)
T PRK09287 136 AYELVAPILEKIAA 149 (459)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.1e-06 Score=74.38 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=103.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHH-HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l-~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-||++ .|.||.++|..+...|++|.+++++.... +.+.+ .| +. ..+.+++
T Consensus 20 IgIIG---~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~-----------~G--------------~~-~~s~~ea 70 (330)
T PRK05479 20 VAIIG---YGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA-----------DG--------------FE-VLTVAEA 70 (330)
T ss_pred EEEEe---eHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH-----------CC--------------Ce-eCCHHHH
Confidence 46776 89999999999999999999887765432 22111 11 11 2367788
Q ss_pred cccCcEEEEccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-e-------
Q psy17416 193 LEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-L------- 263 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-l------- 263 (290)
+++||+|+.++|... ...++ +++.+.++++++| +-.+++.+.......+...+++-..|-.|.+..+ .
T Consensus 71 a~~ADVVvLaVPd~~--~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv 147 (330)
T PRK05479 71 AKWADVIMILLPDEV--QAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGV 147 (330)
T ss_pred HhcCCEEEEcCCHHH--HHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCc
Confidence 999999999999665 36787 7799999999988 7788888877765555445677777766665211 0
Q ss_pred EEEe-cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIV-PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv-~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-=++ .....+.+..+.+.+++..+|-
T Consensus 148 ~~l~av~~d~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 148 PCLIAVHQDASGNAKDLALAYAKGIGG 174 (330)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 0122 3445568889999999999985
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=78.86 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=96.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHH--HHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~--~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~- 75 (290)
+++++.+++||+||.|+|+...+|.-++. .+...+++++++. |+|+.++. ++++.+..+ |+||..+|-.
T Consensus 50 ~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g 124 (296)
T PRK11559 50 STAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSG 124 (296)
T ss_pred CCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCC
Confidence 57888899999999999999998877664 3666778899887 55666654 666666432 7888776532
Q ss_pred ------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeE---Eecccch----hHHHHHHHHHHcCceeEE
Q psy17416 76 ------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA---LNRIHGL----IGQAWAMIFASAGYKVSL 142 (290)
Q Consensus 76 ------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~---~nri~G~----~g~~ia~~~~~~G~~V~l 142 (290)
...++++.|. +++.++.+..+++.+|+.++.+....+|+. .|+++-. ...+....+.+.|
T Consensus 125 ~~~~a~~g~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G----- 197 (296)
T PRK11559 125 GEPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG----- 197 (296)
T ss_pred CHHHHhhCcEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 1446677774 689999999999999999998843445664 5554322 1223333334445
Q ss_pred ecCCHHHHHHHHH
Q psy17416 143 YDVLSEQIENAKN 155 (290)
Q Consensus 143 ~d~~~e~l~~a~~ 155 (290)
.+++.+.+++.
T Consensus 198 --i~~~~~~~~l~ 208 (296)
T PRK11559 198 --VNPDLVYQAIR 208 (296)
T ss_pred --CCHHHHHHHHh
Confidence 66777666554
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.9e-06 Score=72.11 Aligned_cols=146 Identities=13% Similarity=0.091 Sum_probs=102.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc---e-eEEecC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY---K-VSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~---~-V~l~d~-~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
-|+++ .|.||..++..+.+.|. . +..+++ +++..++..+ . . ++..+.+
T Consensus 7 I~iIG---~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~----~------~--------------~~~~~~~ 59 (245)
T PRK07634 7 ILFIG---AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA----R------Y--------------NVSTTTD 59 (245)
T ss_pred EEEEC---cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH----H------c--------------CcEEeCC
Confidence 35665 79999999998887763 2 666776 4555433222 0 0 1123467
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCe-EEEe
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL-VEIV 267 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~l-vEvv 267 (290)
+++++.++|+||.|+|... -+++++++.+.++ +.+|+|.+.+++++.+...++...+++-.||-.+.....- -=++
T Consensus 60 ~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~ 136 (245)
T PRK07634 60 WKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYT 136 (245)
T ss_pred hHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEe
Confidence 7778899999999999654 6788888887766 5678899999999999888765556666777333222111 1134
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 268 PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 268 ~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.+...+++..+.+.++++.+|+
T Consensus 137 ~~~~~~~~~~~~v~~lf~~~G~ 158 (245)
T PRK07634 137 MGQSVNETHKETLQLILKGIGT 158 (245)
T ss_pred eCCCCCHHHHHHHHHHHHhCCC
Confidence 4567789999999999999996
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.9e-06 Score=72.51 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=94.3
Q ss_pred eeEEecccchhHHHHHHHHHHcCce---eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYK---VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~---V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
||++ .|.||..++..+.+.|+. +.+++++++..++..+.. .....+.+..+
T Consensus 4 giIG---~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~-----------------------~~~~~~~~~~~ 57 (258)
T PRK06476 4 GFIG---TGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF-----------------------PKVRIAKDNQA 57 (258)
T ss_pred EEEC---cCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc-----------------------CCceEeCCHHH
Confidence 6676 799999999999988864 478999987765433310 01223467777
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEecCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAA 270 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~~~ 270 (290)
+++++|+||.|+|. ....+++.++. +.++.+++|...+++++.+........+.+-.+|..|..... +.-++++
T Consensus 58 ~~~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~- 132 (258)
T PRK06476 58 VVDRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP- 132 (258)
T ss_pred HHHhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-
Confidence 78899999999994 33567777763 467788888889999999988776444555555544332221 2223332
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q psy17416 271 WTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lgk~ 290 (290)
.+.+.++++.+|+.
T Consensus 133 ------~~~~~~l~~~lG~~ 146 (258)
T PRK06476 133 ------DPFVAALFDALGTA 146 (258)
T ss_pred ------HHHHHHHHHhcCCc
Confidence 15789999999863
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.9e-07 Score=81.99 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=78.7
Q ss_pred cchhHHHHHHHHHHcC-------ceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 122 HGLIGQAWAMIFASAG-------YKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-------~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
.|.||.++|..++..| ++|.+|.++++. -.+..+.+.+ .+.-..+++...+.++|..++|+++++
T Consensus 19 aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~-------~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 19 SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT-------KHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh-------cCCCcccCCCCcCCCceEEecCHHHHH
Confidence 6999999999999887 799999999863 1111111111 122223344555678899999999999
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhh--hCCCCcEEEeCCCCcCH
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDI--FMSSNTILSSSTSSFLP 236 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~--~~~~~~ii~s~ts~~~~ 236 (290)
++||+|+.|+|... -+++++++.+ .++++++++|-++++..
T Consensus 92 ~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 92 EDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred hcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 99999999999666 8899999998 78888888876666553
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-06 Score=91.69 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=99.7
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+...|++|.+||++++..++... .|. ....++.+++
T Consensus 327 IGfIG---lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~Ga--------------~~~~s~~e~~ 378 (1378)
T PLN02858 327 IGFIG---LGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFEN-----------AGG--------------LAGNSPAEVA 378 (1378)
T ss_pred EEEEC---chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC--------------eecCCHHHHH
Confidence 37776 8999999999999999999999999987765433 111 1246777788
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCC--------CC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPP--------YF 260 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~--------~~ 260 (290)
++||+||.|+|....++.-++. .+.+.++++.+++ +.|+.++. ++++.+.. .--|.+|...| ..
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 9999999999988877666553 3556677888776 44444443 44444332 00245554433 22
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
..+.-++.| +++.++++..+++.+|++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEK 482 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCc
Confidence 346667777 788999999999999873
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-06 Score=77.85 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=83.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHH----hcccCCCCceeeeccCCCCCC--
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL----SEHSTHRSQFIVAHPVNPPYF-- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l----~~~~~~~~r~~g~hf~~P~~~-- 75 (290)
+|..+++++||+||.|+|... ...+++..+-..+++++++. |+|+.+...+ +..+..+.+.+|+||++|...
T Consensus 73 sd~~eaa~~ADvVIlaVP~~~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 73 SDDAEAAKHGEIHILFTPFGK-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CCHHHHHhCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 577788899999999999654 56778889998899998877 6667776644 355555667889999988764
Q ss_pred --CCeeeEeeCCCC------CHHHHHHHHHHHHHhCCccEEE
Q psy17416 76 --IPLVEIVPAAWT------SERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 76 --~~lvEiv~~~~t------~~~~~~~~~~~~~~lgk~~v~v 109 (290)
..-++++.+..| +++.++.+..++..+|+.++.+
T Consensus 151 ae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~ 192 (342)
T PRK12557 151 TPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVV 192 (342)
T ss_pred cccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 233568877655 8999999999999999988776
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-05 Score=73.13 Aligned_cols=93 Identities=23% Similarity=0.268 Sum_probs=72.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||+.+|..+...|++|..||++++.... .+.+..++++++++||+|+.
T Consensus 154 ~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~-----------------------------~~~~~~~l~ell~~aDiVil 204 (330)
T PRK12480 154 TGRIGAATAKIYAGFGATITAYDAYPNKDLD-----------------------------FLTYKDSVKEAIKDADIISL 204 (330)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeCChhHhhh-----------------------------hhhccCCHHHHHhcCCEEEE
Confidence 7999999999999999999999998753210 01124578889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHS 243 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~ 243 (290)
++|...+.+..+.+++.+.++++++++..+.+..+. .+.+.+
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL 248 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAV 248 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHH
Confidence 999998888888888889999999998655555544 444444
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-06 Score=76.93 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=79.0
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..+|..++..|+ +|.++|++++.+......+.... .......+++.+++++ ++++||+||
T Consensus 10 aG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-------------~~~~~~~~i~~~~d~~-~~~~aDiVi 75 (307)
T PRK06223 10 AGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-------------PVEGFDTKITGTNDYE-DIAGSDVVV 75 (307)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-------------hhcCCCcEEEeCCCHH-HHCCCCEEE
Confidence 58999999999998875 99999998876532111111110 0011124566677886 589999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHHHHhccCCC-CCcEEEec
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSVLSEHSTH-RSQFIVAH 253 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~la~~~~~-~~r~ig~H 253 (290)
.++ .++..+++++++++.+.+++.. |++||.+.+-...+...... |.|++|+-
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 886 4788999999999999987763 33466665544444443333 36777773
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=79.27 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=63.7
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..+|..+...|++|.+|++++. .+++++++
T Consensus 8 ~iiG---~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------------------------~~~~~~~~ 46 (308)
T PRK14619 8 AILG---AGAWGSTLAGLASANGHRVRVWSRRSG--------------------------------------LSLAAVLA 46 (308)
T ss_pred EEEC---ccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------------------------CCHHHHHh
Confidence 5565 799999999999999999999998752 24456678
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhh-CCCCcEEEeCCCCcCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSSTSSFLP 236 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~ 236 (290)
++|+||.|+|.. ..+.+++++.+. +++++++++.++++..
T Consensus 47 ~advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 47 DADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred cCCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence 999999999974 477888888774 7888888877765554
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-06 Score=75.39 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHcC----ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 123 GLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 123 G~~g~~ia~~~~~~G----~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
|.+|..++..++..| .++.++|.+++.++.....+++.... . ...+++.++|+.+++++||+
T Consensus 8 G~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~-------------~-~~~~i~~~~d~~~~~~~aDi 73 (263)
T cd00650 8 GNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEP-------------L-ADIKVSITDDPYEAFKDADV 73 (263)
T ss_pred ChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhh-------------c-cCcEEEECCchHHHhCCCCE
Confidence 789999999999888 79999999997776655544433211 1 12466778887778999999
Q ss_pred EEE--------------ccccchHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHhccCC-CCCcEEEec
Q psy17416 199 IQE--------------SVPEILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLSEHST-HRSQFIVAH 253 (290)
Q Consensus 199 Vie--------------avpe~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la~~~~-~~~r~ig~H 253 (290)
||+ .+.++..+++++.+++.+.++...+|. ||--.+....+.+... .+.|++|+.
T Consensus 74 Vv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~ 144 (263)
T cd00650 74 VIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLG 144 (263)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEee
Confidence 999 788899999999999999985444333 2222221112222222 357788877
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-05 Score=69.12 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=86.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE- 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE- 80 (290)
++..++++++|+||-|++ .+...+++..+...++++.++.|.++++++.++....+.. +++++++..|.....-+.
T Consensus 53 ~~~~e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~ 129 (266)
T PLN02688 53 ASNTEVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASV 129 (266)
T ss_pred CChHHHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEE
Confidence 466778899999999994 6668889889988888999888999999999999877654 788888888876554444
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+..++++.++.+..++..+|+ ++.+
T Consensus 130 l~~~~~~~~~~~~~v~~l~~~~G~-~~~~ 157 (266)
T PLN02688 130 MSLGPAATADDRDLVATLFGAVGK-IWVV 157 (266)
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence 456778899999999999999998 7765
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-06 Score=78.59 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=85.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHh-hcCCCcEEeecCCC--CChHHHhcccCCCCceeeeccCCCC-----
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDI-FMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPP----- 73 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~-~~~~~~i~~snts~--~~~~~l~~~~~~~~r~~g~hf~~P~----- 73 (290)
+++++++++||+||.|+|.+ ...++++++.. ..++++++...+|. -.+..+.....+..+|+|.|++.=.
T Consensus 52 ~~~~~~~~~aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~ 129 (359)
T PRK06545 52 ADLQRAAAEADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGV 129 (359)
T ss_pred cCHHHHhcCCCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhH
Confidence 57788899999999999986 56899999987 37888888654443 3344555555667899999964321
Q ss_pred -----C--CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEec
Q psy17416 74 -----Y--FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 120 (290)
Q Consensus 74 -----~--~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nr 120 (290)
. .....=+++++.++++.++.+.+++..+|+.++.+..+....++..
T Consensus 130 ~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~ 183 (359)
T PRK06545 130 AAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVAL 183 (359)
T ss_pred HHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhH
Confidence 1 1122336788889999999999999999999988755554444443
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-05 Score=69.14 Aligned_cols=137 Identities=14% Similarity=0.086 Sum_probs=100.1
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc----eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~----~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
-||++ +|.||.+++..+.+.|. ++..++++++.. + .....+.
T Consensus 6 I~iIG---~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~--------------~~~~~~~ 51 (260)
T PTZ00431 6 VGFIG---LGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P--------------FVYLQSN 51 (260)
T ss_pred EEEEC---ccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C--------------eEEeCCh
Confidence 46776 89999999999988762 488888876431 0 0123455
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCC---CcEEEeccCCCCCCCCeEEE
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR---SQFIVAHPVNPPYFIPLVEI 266 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~---~r~ig~Hf~~p~~~~~lvEv 266 (290)
.+.+.++|+||.|+| ...-.++++++.+.++++ +++|...+++.+.+...++.. .|+++.|+-. ......-+
T Consensus 52 ~~~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~--~g~g~t~i 126 (260)
T PTZ00431 52 EELAKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSL--VGQGSLVF 126 (260)
T ss_pred HHHHHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhH--hcceeEEE
Confidence 556789999999999 444789999998887765 557899999998888776543 3566666511 11234557
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+++..++++..+.+.++|+.+|+
T Consensus 127 ~~~~~~~~~~~~~v~~l~~~~G~ 149 (260)
T PTZ00431 127 CANNNVDSTDKKKVIDIFSACGI 149 (260)
T ss_pred EeCCCCCHHHHHHHHHHHHhCCc
Confidence 88888899999999999999996
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-05 Score=73.64 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=65.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hhh------hcccccCC
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EEQ------FGLISGTP 187 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~~------~~~i~~~~ 187 (290)
++++ +|.||..+|..++..|++|++||++++.++... .|...-..+. .+. .+++..++
T Consensus 7 ~VIG---lG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~------------~g~~~~~e~~l~~~l~~~~~~g~l~~~~ 71 (415)
T PRK11064 7 SVIG---LGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN------------RGEIHIVEPDLDMVVKTAVEGGYLRATT 71 (415)
T ss_pred EEEC---cchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH------------CCCCCcCCCCHHHHHHHHhhcCceeeec
Confidence 4555 799999999999999999999999999877522 1221111010 011 12344444
Q ss_pred chHhhcccCcEEEEccccc--------hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 188 VLRECLEDAIFIQESVPEI--------LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 188 ~l~~~l~~aDlVieavpe~--------~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+ +++||+||.|+|.+ +..-...++.+.+.++++++++
T Consensus 72 ~----~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI 116 (415)
T PRK11064 72 T----PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVI 116 (415)
T ss_pred c----cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEE
Confidence 3 34899999999975 2445566788999999998876
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-05 Score=72.25 Aligned_cols=150 Identities=14% Similarity=0.065 Sum_probs=90.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh---hhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP---EEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~---~~~~~~i~~~~~l~~~l~~aDl 198 (290)
+|.||..+|..+.+.|++|.++|+++. .+...+ .|........ .....++..+++.+ ++.++|+
T Consensus 10 ~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~ 76 (341)
T PRK08229 10 AGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-----------HGLTLTDYRGRDVRVPPSAIAFSTDPA-ALATADL 76 (341)
T ss_pred CCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-----------cCceeecCCCcceecccceeEeccChh-hccCCCE
Confidence 799999999999999999999998642 222111 2211100000 00113444566664 6789999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCCCCCcEEEeccCCCCCCCC-eE------EEecCC
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTHRSQFIVAHPVNPPYFIP-LV------EIVPAA 270 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~~~~r~ig~Hf~~p~~~~~-lv------Evv~~~ 270 (290)
||.|++... ..++++++.+.++++++|++.+.++... .+...+.....+.|.+++......| .+ .+.-+
T Consensus 77 vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~~- 153 (341)
T PRK08229 77 VLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAIE- 153 (341)
T ss_pred EEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEec-
Confidence 999999654 6788999999999999888877777754 4555554322334444422111000 00 11111
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q psy17416 271 WTSERVITRTREIMTEIGM 289 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lgk 289 (290)
..+.++++.++++..|.
T Consensus 154 --~~~~~~~~~~~l~~~g~ 170 (341)
T PRK08229 154 --ASPALRPFAAAFARAGL 170 (341)
T ss_pred --CCchHHHHHHHHHhcCC
Confidence 12446778888877663
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00011 Score=67.20 Aligned_cols=146 Identities=13% Similarity=0.110 Sum_probs=101.2
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~-~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-||++ .|.||.+++..+...|++|.+++. +++..+++.+ .| +.. .+..++
T Consensus 6 IgiIG---~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~-----------~G--------------v~~-~s~~ea 56 (314)
T TIGR00465 6 VAIIG---YGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATE-----------DG--------------FKV-GTVEEA 56 (314)
T ss_pred EEEEe---EcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHH-----------CC--------------CEE-CCHHHH
Confidence 46776 899999999999999998876544 3444333322 11 112 246667
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCC-------CC-eE
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-------IP-LV 264 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~-------~~-lv 264 (290)
+++||+|+.++|.... ...+++++.+.++++. ++|-..++++..+...++...+++=.=|--|... .. .-
T Consensus 57 ~~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~ 134 (314)
T TIGR00465 57 IPQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVP 134 (314)
T ss_pred HhcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCee
Confidence 8999999999996632 4566777888888887 4577888888888766654445665555555542 22 11
Q ss_pred EEe-cCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 265 EIV-PAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 265 Evv-~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
=++ .+...+.+..+.+.+++..+|++
T Consensus 135 ~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 135 TLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 233 56677888899999999999974
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-05 Score=71.82 Aligned_cols=101 Identities=15% Similarity=0.032 Sum_probs=75.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-hhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLS-PEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~-~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..+|..+++.| +|.+|.++++..+...+. +.....++ ......++..++|+++++.++|+||
T Consensus 15 aGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~-----------~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi 82 (341)
T PRK12439 15 GGSWGTTVASICARRG-PTLQWVRSAETADDINDN-----------HRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV 82 (341)
T ss_pred CCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhc-----------CCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence 6999999999999998 788999999876655441 11111111 1122345677889988899999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
.|+|... -+++++++.+.++++++++|-+.++..
T Consensus 83 lavps~~--~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 83 MGVPSHG--FRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred EEeCHHH--HHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 9999554 778999999999999877776666664
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-06 Score=79.09 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=70.4
Q ss_pred CCcHHhhcccCcEEEEcc-------------------cCChHHHHHHHHHHHhhcCCC-cEEeecCCCCChHHHhcccCC
Q psy17416 1 TPVLRECLEDAIFIQESV-------------------PEILQIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTH 60 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~-------------------~e~~~~K~~~~~~~~~~~~~~-~i~~snts~~~~~~l~~~~~~ 60 (290)
++|.+ +++|||+||+++ .+|.++++++++++++.+|+. .|++||++++....+....++
T Consensus 66 ~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~ 144 (321)
T PTZ00082 66 TNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGL 144 (321)
T ss_pred CCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCC
Confidence 36774 899999999955 889999999999999999773 799999999999999988887
Q ss_pred C-CceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 61 R-SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 61 ~-~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
| +|++|++ |..+.......+++.+|..|-
T Consensus 145 p~~rviGlg------------------t~lds~R~~~~la~~l~v~~~ 174 (321)
T PTZ00082 145 PKNKVCGMA------------------GVLDSSRLRTYIAEKLGVNPR 174 (321)
T ss_pred ChhhEEEec------------------CcccHHHHHHHHHHHhCCCcc
Confidence 6 9999997 233344445556666776443
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00016 Score=62.66 Aligned_cols=148 Identities=17% Similarity=0.087 Sum_probs=91.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||..++..+.+.|++|.+++++++..+...+.....+. ..|.. .++. ..+..++++++|+||.
T Consensus 9 ~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~---~~g~~----------~~~~-~~~~~ea~~~aDvVil 74 (219)
T TIGR01915 9 TGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELG---HGGSD----------IKVT-GADNAEAAKRADVVIL 74 (219)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhcc---ccCCC----------ceEE-EeChHHHHhcCCEEEE
Confidence 48899999999999999999999999887654432211110 00100 0111 1344567889999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH-----------------HHHhccCCCCCcEEEeccCC------C-
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-----------------SVLSEHSTHRSQFIVAHPVN------P- 257 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------------~~la~~~~~~~r~ig~Hf~~------p- 257 (290)
|+|... -.++++++.+.++. .++++.+.++.. +.+++.++...|++..-... +
T Consensus 75 avp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~ 151 (219)
T TIGR01915 75 AVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDV 151 (219)
T ss_pred ECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCC
Confidence 999544 56777888776654 677766655554 34555554325666542211 1
Q ss_pred CC-CCCeEEEecCCCCCHHHHHHHHHHHHHc-CC
Q psy17416 258 PY-FIPLVEIVPAAWTSERVITRTREIMTEI-GM 289 (290)
Q Consensus 258 ~~-~~~lvEvv~~~~t~~e~~~~~~~~~~~l-gk 289 (290)
.. ...-+-++ |. +++..+++.++.+.+ |.
T Consensus 152 ~~~~~~~~~v~-Gd--d~~ak~~v~~L~~~~~G~ 182 (219)
T TIGR01915 152 DDEVDCDVLVC-GD--DEEAKEVVAELAGRIDGL 182 (219)
T ss_pred CCCCCCCEEEE-CC--CHHHHHHHHHHHHhcCCC
Confidence 11 11222233 32 677888999999988 75
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.5e-06 Score=64.74 Aligned_cols=113 Identities=23% Similarity=0.227 Sum_probs=70.7
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEE-ecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l-~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
.-|+|+ .|..|..++..+.+.|++|.. |.++++..+++...+.. . ...++++
T Consensus 12 ~I~iIG---aGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~-----------------------~-~~~~~~~ 64 (127)
T PF10727_consen 12 KIGIIG---AGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGA-----------------------G-AILDLEE 64 (127)
T ss_dssp EEEEEC---TSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----------------------------TTG
T ss_pred EEEEEC---CCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccc-----------------------c-ccccccc
Confidence 346666 688899999999999999864 67888776665542111 1 1245566
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhh--CCCCcEEEeCCCCcCHHHHhccCCCCCcEEEecc
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIF--MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 254 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf 254 (290)
.+.++|++|.++|++. ..++.++|.+. ..++.+++=.+.+++.+.+......-.....+||
T Consensus 65 ~~~~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 65 ILRDADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp GGCC-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred ccccCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 7899999999999997 77999999988 8889888744445555555443334445666775
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00015 Score=64.37 Aligned_cols=145 Identities=17% Similarity=0.168 Sum_probs=105.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcC----ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G----~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
-||++ .|.||.+++.-+.+.| .+|.+.+++++..+...+ . . +.. .+++.
T Consensus 4 IgfIG---~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~----~------~-------------g~~-~~~~~ 56 (266)
T COG0345 4 IGFIG---AGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAA----E------Y-------------GVV-TTTDN 56 (266)
T ss_pred EEEEc---cCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHH----H------c-------------CCc-ccCcH
Confidence 47887 7999999999999988 589999999987763222 1 1 011 15666
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCC-CeEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-PLVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~-~lvEvv~ 268 (290)
.+++.++|+||.|+.. ..-.++++++.+ ..++.+++|-.-+++++.+...++ ..+++=.=|--|.-.. -.-=++.
T Consensus 57 ~~~~~~advv~LavKP--q~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~ 132 (266)
T COG0345 57 QEAVEEADVVFLAVKP--QDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISA 132 (266)
T ss_pred HHHHhhCCEEEEEeCh--HhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeec
Confidence 6788899999999984 346788888888 778889999999999999988886 3333333232222111 1223566
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
+...+++..+.+.++++.+|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~ 153 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGK 153 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCC
Confidence 788899999999999999997
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.3e-06 Score=76.00 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=73.0
Q ss_pred CCcHHhhcccCcEEEEcc--cCCh------------HHHHHHHHHHHhhcCCC-cEEeecCCCCChHHHhcccCCC-Cce
Q psy17416 1 TPVLRECLEDAIFIQESV--PEIL------------QIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQF 64 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--~e~~------------~~K~~~~~~~~~~~~~~-~i~~snts~~~~~~l~~~~~~~-~r~ 64 (290)
++|++ +++|||+|++++ +++. ++++++.+++++.||+. .|++||++++....+....+.| +|+
T Consensus 65 ~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rv 143 (319)
T PTZ00117 65 TNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKI 143 (319)
T ss_pred CCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccE
Confidence 36777 899999999999 8877 99999999999999888 6889999999988888888777 999
Q ss_pred eeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 65 ~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+|++ |..++...-..+++.+|..|-.+
T Consensus 144 iG~g------------------t~lds~R~~~~la~~l~v~~~~v 170 (319)
T PTZ00117 144 CGMA------------------GVLDSSRFRCNLAEKLGVSPGDV 170 (319)
T ss_pred EEec------------------chHHHHHHHHHHHHHhCCCcccc
Confidence 9987 33445555566677788654433
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.6e-06 Score=76.42 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=72.3
Q ss_pred CcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCCc-EEeecCCCCChHHHhcccCC-CCcee
Q psy17416 2 PVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSVLSEHSTH-RSQFI 65 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~~-i~~snts~~~~~~l~~~~~~-~~r~~ 65 (290)
+|.+ ++++||+||+++ +||+++|+++++++++.++++. |+.||.+++....+....+. |+|++
T Consensus 59 ~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rvi 137 (300)
T cd01339 59 NDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVI 137 (300)
T ss_pred CCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEE
Confidence 5654 799999999866 8999999999999999998888 68899999999998888776 58999
Q ss_pred eeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 66 g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
|+- |..++...-..+++.++..|-.+
T Consensus 138 Glg------------------t~lds~r~~~~la~~l~v~~~~v 163 (300)
T cd01339 138 GMA------------------GVLDSARFRYFIAEELGVSVKDV 163 (300)
T ss_pred Eec------------------chHHHHHHHHHHHHHhCCCccce
Confidence 874 45566666677777888755433
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0008 Score=63.12 Aligned_cols=140 Identities=12% Similarity=0.035 Sum_probs=89.6
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ .|.||+.+|..+...|.+|..||+++...+...+ .++....++++.
T Consensus 201 tVGIVG---~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~l~el 252 (386)
T PLN03139 201 TVGTVG---AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE-------------------------TGAKFEEDLDAM 252 (386)
T ss_pred EEEEEe---ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhh-------------------------cCceecCCHHHH
Confidence 345565 7999999999999999999999987522111000 012234688899
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEecc--------CCCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVAHP--------VNPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~Hf--------~~p~~~~ 261 (290)
+++||+|+.++|...+.+.-+-+++...++++++++..+-+-.+. .+.+.+.. +-+..++=- -+|.+.+
T Consensus 253 l~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~ 332 (386)
T PLN03139 253 LPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYM 332 (386)
T ss_pred HhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcC
Confidence 999999999999888877766677888899999987433333332 45444431 222222221 1233456
Q ss_pred CeEEEecCC-CCCHHHHHHH
Q psy17416 262 PLVEIVPAA-WTSERVITRT 280 (290)
Q Consensus 262 ~lvEvv~~~-~t~~e~~~~~ 280 (290)
|.+-++|+- .++.+..++.
T Consensus 333 pNvilTPHiag~t~~~~~r~ 352 (386)
T PLN03139 333 PNHAMTPHISGTTIDAQLRY 352 (386)
T ss_pred CCeEEcccccccCHHHHHHH
Confidence 788888874 3344554443
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.8e-05 Score=63.30 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=65.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hh------hhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EE------QFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~------~~~~i~~~~~l~~~l~ 194 (290)
+|.+|.-+|..++..|++|+.+|.+++.++...+ |...-..+. .+ ..++++++++.+++++
T Consensus 8 lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~------------g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~ 75 (185)
T PF03721_consen 8 LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN------------GELPIYEPGLDELLKENVSAGRLRATTDIEEAIK 75 (185)
T ss_dssp -STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT------------TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh------------ccccccccchhhhhccccccccchhhhhhhhhhh
Confidence 6889999999999999999999999998776543 221111111 11 1357788999999999
Q ss_pred cCcEEEEccccch--------HHHHHHHHHHhhhCCCCcEEE
Q psy17416 195 DAIFIQESVPEIL--------QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 195 ~aDlVieavpe~~--------~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||++|.|+|-+. .--.+...+|.+.++++.+++
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV 117 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV 117 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE
Confidence 9999999998554 335677788999999988776
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0002 Score=63.10 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=90.4
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHH
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA 216 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~ 216 (290)
.++|.+++++++..++..+. .| +..+.+..+.+.++|+||.|++ ...-.+++.+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g--------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~ 62 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG--------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSE 62 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC--------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHH
Confidence 36899999998876544331 01 2234566667789999999999 4446788888
Q ss_pred HhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 217 IDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 217 l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~-~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+.+.+.++.+|+|-..+++++.+...++...+++=.=|-.|... ....-+.+++..+++..+.+..+|..+|+
T Consensus 63 l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~ 136 (245)
T TIGR00112 63 LKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE 136 (245)
T ss_pred HhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Confidence 88877778899999999999999887754333333222222222 12344677888899999999999999997
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.3e-05 Score=56.09 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=64.8
Q ss_pred eeEEecccchhHHHHHHHHHHcC---ceeEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC-ch
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG---YKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VL 189 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G---~~V~l~-d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~-~l 189 (290)
||++ .|.||..++..+.+.| .+|.++ +++++...+..++ . ...... +.
T Consensus 3 ~iIG---~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~--------------~~~~~~~~~ 55 (96)
T PF03807_consen 3 GIIG---AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------Y--------------GVQATADDN 55 (96)
T ss_dssp EEES---TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------C--------------TTEEESEEH
T ss_pred EEEC---CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------h--------------ccccccCCh
Confidence 5664 7999999999999999 899955 9999988766551 0 012223 67
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
.++++++|+||.|+|... -.+++.++ ....++.+++|-+
T Consensus 56 ~~~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~ 94 (96)
T PF03807_consen 56 EEAAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEES
T ss_pred HHhhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeC
Confidence 778999999999999555 77999999 6677777777643
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00041 Score=62.65 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=104.7
Q ss_pred cHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeec
Q psy17416 3 VLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 68 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~h 68 (290)
+.+++++++|.||==+| +++.+..++++ .+++.+++.+...+..+...+...+-+ ...
T Consensus 47 ~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~----~~~~~~~~~~G~~~~~l~~~a~~~gi~----v~~ 118 (287)
T TIGR02853 47 LLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLE----STKGHCTIYVGISNPYLEQLAADAGVK----LIE 118 (287)
T ss_pred chhhhhccCCEEEECCccccCCceEecccccCCccccHHHHH----hcCCCCEEEEecCCHHHHHHHHHCCCe----EEE
Confidence 45667899999997777 22223444444 445789999998888887655443211 111
Q ss_pred cCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHH
Q psy17416 69 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSE 148 (290)
Q Consensus 69 f~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e 148 (290)
|+- +.-+-+-.+..|.+.++..+.+. .++.+....-+.++ +|.+|+.+|..+...|.+|.+++++++
T Consensus 119 ~~~----~~~va~~n~~~~Ae~ai~~al~~------~~~~l~gk~v~IiG---~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 119 LFE----RDDVAIYNSIPTAEGAIMMAIEH------TDFTIHGSNVMVLG---FGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred EEe----ccceEEEccHhHHHHHHHHHHHh------cCCCCCCCEEEEEc---ChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 111 11111222333344444433332 12233223334454 799999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 149 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 149 ~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
...++.+ .|.. .+. ..++.+.++++|+||.++|..+- -++..+.+++++++.
T Consensus 186 ~~~~~~~-----------~g~~-----------~~~-~~~l~~~l~~aDiVint~P~~ii-----~~~~l~~~k~~aliI 237 (287)
T TIGR02853 186 DLARITE-----------MGLI-----------PFP-LNKLEEKVAEIDIVINTIPALVL-----TADVLSKLPKHAVII 237 (287)
T ss_pred HHHHHHH-----------CCCe-----------eec-HHHHHHHhccCCEEEECCChHHh-----CHHHHhcCCCCeEEE
Confidence 6544322 1110 011 23566778999999999996531 133445678888876
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=65.43 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=81.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE- 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE- 80 (290)
++.++.+.++|+||-|++-. .=.++++++.... +.++.|.++++++..+...+++..+++.+|+.+|.....-+.
T Consensus 54 ~~~~~~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~ 129 (267)
T PRK11880 54 TDNQEAAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTA 129 (267)
T ss_pred CChHHHHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEE
Confidence 46677789999999999533 3345666666555 578889999999999998887677999999999876555444
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+..++++.++.+.+++..+|+ ++.+
T Consensus 130 i~~~~~~~~~~~~~v~~l~~~lG~-~~~~ 157 (267)
T PRK11880 130 LTANALVSAEDRELVENLLSAFGK-VVWV 157 (267)
T ss_pred EecCCCCCHHHHHHHHHHHHhCCe-EEEE
Confidence 567778899999999999999997 5555
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.9e-05 Score=68.77 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=71.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc-ccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l-~~aDlVi 200 (290)
+|.||..++..+.+.|++|.+|+++++.++...+..+ +. ..++......++..++++.+++ .++|++|
T Consensus 8 aGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~---------~~--~~~~~~~~~~~i~~~~~~~~~~~~~~Dlii 76 (326)
T PRK14620 8 AGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRK---------NL--KYLPTCHLPDNISVKSAIDEVLSDNATCII 76 (326)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCC---------Cc--ccCCCCcCCCCeEEeCCHHHHHhCCCCEEE
Confidence 6999999999999999999999999876654433100 00 0011111224556677887766 5899999
Q ss_pred EccccchHHHHHHHHHHhh-hCCCCcEEEeCCCCcC
Q psy17416 201 ESVPEILQIKHQVYRAIDI-FMSSNTILSSSTSSFL 235 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~~ 235 (290)
.|+|... -.++++++.+ .+++++.+++-++++.
T Consensus 77 iavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 77 LAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 9999665 6788999988 8888876666666663
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=68.02 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=93.4
Q ss_pred cchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhh-----cccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQF-----GLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~-----~~i~~~~~l~~~l~ 194 (290)
+|.+|.-+|..++.. |++|+.+|.+++.++...+. +..-......+++ .+++++++++++++
T Consensus 9 ~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g-----------~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~ 77 (473)
T PLN02353 9 AGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSD-----------QLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA 77 (473)
T ss_pred CCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcC-----------CCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh
Confidence 689999999999987 58899999999988765541 1110000111221 24888999988899
Q ss_pred cCcEEEEccccch-------------HHHHHHHHHHhhhCCCCcEEE-eCCCCcCHH-HHhccC------------CCCC
Q psy17416 195 DAIFIQESVPEIL-------------QIKHQVYRAIDIFMSSNTILS-SSTSSFLPS-VLSEHS------------THRS 247 (290)
Q Consensus 195 ~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~-~la~~~------------~~~~ 247 (290)
+||++|.|||-.. .--....++|.+.++++.+++ .+|-..-.+ .+...+ ..|+
T Consensus 78 ~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 78 EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 9999999996333 245677788999999988776 222222211 222111 1344
Q ss_pred cEEEec----cCCCCCCCCeEEEecCCC--CCHHHHHHHHHHHHHc
Q psy17416 248 QFIVAH----PVNPPYFIPLVEIVPAAW--TSERVITRTREIMTEI 287 (290)
Q Consensus 248 r~ig~H----f~~p~~~~~lvEvv~~~~--t~~e~~~~~~~~~~~l 287 (290)
|+.-.. |.+|+.. |+.+.. +.++..+++.++++.+
T Consensus 158 rl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~ 198 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHW 198 (473)
T ss_pred ccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHh
Confidence 443333 3455532 345532 2356788888888765
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.1e-05 Score=71.52 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=86.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCC--CCChHHHhcccCCCCceeeeccCC----CCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVN----PPYF 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts--~~~~~~l~~~~~~~~r~~g~hf~~----P~~~ 75 (290)
+++++++.+||+||-|+|-+ .-.++++++...+++++++.+.+| ..++..+.+..+...+++|.|++. |...
T Consensus 50 ~~~~e~~~~aDvVIlavp~~--~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~ 127 (437)
T PRK08655 50 NDNIDAAKDADIVIISVPIN--VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLK 127 (437)
T ss_pred cCHHHHhccCCEEEEecCHH--HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccC
Confidence 47778899999999999975 335889999999999999998887 456667777765556899999653 3334
Q ss_pred CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 76 IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 76 ~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
...+-++++..++++.++.+.+++..+|..++.+..+
T Consensus 128 g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e 164 (437)
T PRK08655 128 GQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE 164 (437)
T ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence 4566678888889999999999999999988876433
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0007 Score=63.52 Aligned_cols=134 Identities=12% Similarity=-0.010 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||+.+|..+...|.+|..||++....+.... .++....++++.+++||+|+.
T Consensus 200 ~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~-------------------------~g~~~~~~l~ell~~aDvV~l 254 (385)
T PRK07574 200 AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE-------------------------LGLTYHVSFDSLVSVCDVVTI 254 (385)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh-------------------------cCceecCCHHHHhhcCCEEEE
Confidence 6899999999999999999999987632111000 012234678889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEec-c-------CCCCCCCCeEEEecCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVAH-P-------VNPPYFIPLVEIVPAA 270 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~H-f-------~~p~~~~~lvEvv~~~ 270 (290)
++|-..+.+.-+=++....++++++++..+.+-.+. .+.+.+.. +-+-.++= | -+|.+.+|.|-++|+-
T Consensus 255 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHi 334 (385)
T PRK07574 255 HCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHI 334 (385)
T ss_pred cCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCcc
Confidence 999888776655567888899999987433333332 44444431 22212221 1 1233456788888873
Q ss_pred -CCCHHHHHHH
Q psy17416 271 -WTSERVITRT 280 (290)
Q Consensus 271 -~t~~e~~~~~ 280 (290)
..+.+..+++
T Consensus 335 ag~T~e~~~~~ 345 (385)
T PRK07574 335 SGTTLSAQARY 345 (385)
T ss_pred ccCcHHHHHHH
Confidence 3345555443
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00045 Score=58.84 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=68.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||+-++..+.+.|+.|. +++||+||.
T Consensus 9 ~G~mG~~~~~~~~~~g~~v~---------------------------------------------------~~~~DlVil 37 (197)
T PRK06444 9 NGRLGRVLCSILDDNGLGVY---------------------------------------------------IKKADHAFL 37 (197)
T ss_pred CCcHHHHHHHHHHhCCCEEE---------------------------------------------------ECCCCEEEE
Confidence 47889988888888888774 247999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCC-----CeEEEecCCCCCHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-----PLVEIVPAAWTSERV 276 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~-----~lvEvv~~~~t~~e~ 276 (290)
|+|.+. -.++++++.+ ++ +..+|.... +... ..+|+|.||+..|... +.+-++ .+.++++.
T Consensus 38 avPv~~--~~~~i~~~~~------~v-~Dv~SvK~~-i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~~~ 103 (197)
T PRK06444 38 SVPIDA--ALNYIESYDN------NF-VEISSVKWP-FKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFI-NDISRDNY 103 (197)
T ss_pred eCCHHH--HHHHHHHhCC------eE-EeccccCHH-HHHh---cCCEEecCCCCCCCcCcccccceEEEE-CCCCCHHH
Confidence 999544 5577766542 44 455555553 3222 3489999997664332 233344 67889999
Q ss_pred HHHHHHHHH
Q psy17416 277 ITRTREIMT 285 (290)
Q Consensus 277 ~~~~~~~~~ 285 (290)
++++.++|+
T Consensus 104 ~~~~~~l~~ 112 (197)
T PRK06444 104 LNEINEMFR 112 (197)
T ss_pred HHHHHHHHc
Confidence 999999987
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00019 Score=65.28 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=80.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC---hHHHhcccCCCCceeeeccCCCCCCC--
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPPYFI-- 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~---~~~l~~~~~~~~r~~g~hf~~P~~~~-- 76 (290)
+++++++++||+||.|+|.. ...+++.++...+++++++... ++.. +..+.......-|+++.|++......
T Consensus 58 ~~~~~~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~ 134 (307)
T PRK07502 58 TSAAEAVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGP 134 (307)
T ss_pred CCHHHHhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccch
Confidence 46777899999999999974 3577888888888999877543 3334 33444454445589999999864421
Q ss_pred ----------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 77 ----------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 77 ----------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
..+.+.+...++++.++.+.+++..+|..++.+..+.
T Consensus 135 ~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~ 181 (307)
T PRK07502 135 DAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEH 181 (307)
T ss_pred hhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHH
Confidence 1234666777889999999999999999988874343
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=62.03 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCceeEEecCCHHHHHHH-HHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 126 GQAWAMIFASAGYKVSLYDVLSEQIENA-KNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 126 g~~ia~~~~~~G~~V~l~d~~~e~l~~a-~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
|..+|.-++..|++|++.|.|.+..+.. .++++. .+.+.++|-.++.+.+++.+.=+|
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~ved---------------------AGV~vv~dD~eaa~~~Ei~VLFTP 91 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVED---------------------AGVEVVSDDAEAAEHGEIHVLFTP 91 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHh---------------------cCcEEecCchhhhhcceEEEEecc
Confidence 6778999999999999999988776554 343332 234455665667899999998888
Q ss_pred cchH-HHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh----ccCCCCCc---EEEeccCCCCC--CCCeEEEecCCC---
Q psy17416 205 EILQ-IKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS----EHSTHRSQ---FIVAHPVNPPY--FIPLVEIVPAAW--- 271 (290)
Q Consensus 205 e~~~-~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la----~~~~~~~r---~ig~Hf~~p~~--~~~lvEvv~~~~--- 271 (290)
+. .-..+.++|.+.++.+++|+ ||-+.++-.+- ..++.+.+ +-.+||..-|- ..... ++.|..
T Consensus 92 --FGk~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g 167 (340)
T COG4007 92 --FGKATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEG 167 (340)
T ss_pred --cchhhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCc
Confidence 44 34567788999999999997 33333332332 33444433 33456533221 11121 333333
Q ss_pred ---CCHHHHHHHHHHHHHcCCC
Q psy17416 272 ---TSERVITRTREIMTEIGMK 290 (290)
Q Consensus 272 ---t~~e~~~~~~~~~~~lgk~ 290 (290)
..+|.++++.++++++||.
T Consensus 168 ~elATeEQi~r~velaes~Gk~ 189 (340)
T COG4007 168 KELATEEQIERCVELAESTGKE 189 (340)
T ss_pred eeeccHHHHHHHHHHHHhcCCc
Confidence 3688899999999999984
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00018 Score=72.47 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=69.3
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCC-CCcEEEeccCCCC------------CCCCe
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTH-RSQFIVAHPVNPP------------YFIPL 263 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~-~~r~ig~Hf~~p~------------~~~~l 263 (290)
||.|+| +..-.++++++.+.++++++++ +++++-.+..+...+.. +.+|+|.||+... +....
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 578999 6667899999999999999886 34444444454444442 3579999996554 35567
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+-++|.+.++++.++++.+||+.+|.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga 104 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA 104 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999999985
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0022 Score=59.19 Aligned_cols=123 Identities=19% Similarity=0.149 Sum_probs=80.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+++.... ... .| .. ..++++.+++||+|+.
T Consensus 158 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~--------------~~-~~~l~ell~~aDiV~l 210 (333)
T PRK13243 158 FGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKE-----------LG--------------AE-YRPLEELLRESDFVSL 210 (333)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHH-----------cC--------------CE-ecCHHHHHhhCCEEEE
Confidence 699999999999999999999999764321 000 00 11 2467888999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCCC-CCcEEEecc-------CCCCCCCCeEEEecCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHSTH-RSQFIVAHP-------VNPPYFIPLVEIVPAAW 271 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~~-~~r~ig~Hf-------~~p~~~~~lvEvv~~~~ 271 (290)
++|-..+.+.-+-++..+.++++++++..+.+-.+ ..+...+.. +-...++=- -+|.+.++.|-++|+-.
T Consensus 211 ~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia 290 (333)
T PRK13243 211 HVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIG 290 (333)
T ss_pred eCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCC
Confidence 99988877766667788889999998743333322 244444431 111111111 22445567777888753
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=58.75 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=71.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..+...|++|++++++++..+...+ .|.... .. .....+..+++.++. .++|+||.
T Consensus 8 ~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~--~~-~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 8 AGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRLE--DG-EITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCccc--CC-ceeecccCCCChhHc-CCCCEEEE
Confidence 6899999999999999999999998876654433 121110 00 011122334566654 89999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHS 243 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~ 243 (290)
|++... -..+++++.+.+.++++|++...++... .+...+
T Consensus 73 a~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 73 AVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred eccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 999654 5788899999998887777655566543 444433
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00025 Score=64.58 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.||..+|..++..|+ +|.++|.+++ +.++... ...+ .+. ......+|++++|+++ +++||+||
T Consensus 9 aG~vG~~iA~~la~~g~~~VvlvDi~~~-l~~g~a~--d~~~----~~~------~~~~~~~i~~t~d~~~-~~~aDiVI 74 (305)
T TIGR01763 9 AGFVGATTAFRLAEKELADLVLLDVVEG-IPQGKAL--DMYE----ASP------VGGFDTKVTGTNNYAD-TANSDIVV 74 (305)
T ss_pred cCHHHHHHHHHHHHcCCCeEEEEeCCCC-hhHHHHH--hhhh----hhh------ccCCCcEEEecCCHHH-hCCCCEEE
Confidence 68999999999999886 8999999755 3332211 1111 010 0111257888889886 79999999
Q ss_pred Eccc--------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 201 ESVP--------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 201 eavp--------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+++ .|...-+++.+++.+..+...+|.
T Consensus 75 itag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv 116 (305)
T TIGR01763 75 ITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVV 116 (305)
T ss_pred EcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9998 356677777788888865544433
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00082 Score=61.97 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=64.8
Q ss_pred eeeEEecccchhHHHHHHHH-HHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIF-ASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~-~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-|+++ +|.||+++|..+ ...|.+|..||+++.... . ..+...++++++
T Consensus 149 VgIIG---~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~-------------------------~~~~~~~~l~el 197 (332)
T PRK08605 149 VAVIG---TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---A-------------------------TYVDYKDTIEEA 197 (332)
T ss_pred EEEEC---CCHHHHHHHHHHHhcCCCEEEEECCCccHhH---H-------------------------hhccccCCHHHH
Confidence 44554 799999999998 456889999998864310 0 001234578889
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 237 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~ 237 (290)
+++||+|+.++|.....+.-+-+++.+.++++++++..+.+..+.
T Consensus 198 l~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 198 VEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred HHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 999999999999877664322245667799999887555544433
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=60.82 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=75.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH----HHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT----IQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~----i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aD 197 (290)
.|..|...+..++..||+|+.+|.+++.++...+. .+..++.+++++. ..+++++|+|++++++++|
T Consensus 8 tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~---------~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 8 TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL---------ASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc---------ccCcEEEEcCHHHHHhcCC
Confidence 47778888999999999999999999988765542 1112222222211 2246889999999999999
Q ss_pred EEEEccccchH--------HHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 198 FIQESVPEILQ--------IKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 198 lVieavpe~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
++|.|+|-+.. .-..+.+++.+.++..++++ .-|+.++
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPv 124 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPV 124 (414)
T ss_pred EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCC
Confidence 99999987553 34566678888888866664 4444443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0022 Score=61.05 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=65.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-hhh--hhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLS-PEE--QFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~-~~~--~~~~i~~~~~l~~ 191 (290)
||++ +|.||..+|..++. |++|+.||++++.++...+ |...-..+ ..+ ..+++.++++.+
T Consensus 10 ~vIG---lGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~------------G~~~~~e~~~~~l~~~g~l~~t~~~~- 72 (425)
T PRK15182 10 AIIG---LGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKN------------GVDVNLETTEEELREARYLKFTSEIE- 72 (425)
T ss_pred EEEC---cCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHC------------cCCCCCCCCHHHHHhhCCeeEEeCHH-
Confidence 5665 79999999999877 6999999999998776543 11100000 011 123556677776
Q ss_pred hcccCcEEEEccccch--------HHHHHHHHHHhhhCCCCcEEE
Q psy17416 192 CLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 192 ~l~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++++||++|.|||.+. .--....+.|.+.++++.+++
T Consensus 73 ~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI 117 (425)
T PRK15182 73 KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV 117 (425)
T ss_pred HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE
Confidence 5899999999999763 122222357888898888776
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=60.47 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=70.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH--------HHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT--------IQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
+|.+|--.|..+++.|++|..+|.++..+++.... ....+...+ ..++++.|+|.++ +
T Consensus 17 LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v-------------~~g~lraTtd~~~-l 82 (436)
T COG0677 17 LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAV-------------ESGKLRATTDPEE-L 82 (436)
T ss_pred cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHH-------------hcCCceEecChhh-c
Confidence 78999999999999999999999999988765431 111111122 2356778899986 7
Q ss_pred ccCcEEEEccccchHH--------HHHHHHHHhhhCCCCcEEEe
Q psy17416 194 EDAIFIQESVPEILQI--------KHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 194 ~~aDlVieavpe~~~~--------k~~~~~~l~~~~~~~~ii~s 229 (290)
+.||++|.|||-.+.- -.+..+.+.++++.|.+++-
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl 126 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVIL 126 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 8999999999976642 33455679999999987773
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=59.55 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=69.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..+|..+++.|++|.++++ ++.++...+ .|........ ...-.....++.++...++|+||.
T Consensus 8 ~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 8 AGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHG-DAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCC-eEEecceeecCHHHccCCCCEEEE
Confidence 699999999999999999999999 766554332 2211100000 000111224566665689999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH-HHHhccC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHS 243 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~la~~~ 243 (290)
|++... -.++++++.+.++++++|.+..-++.. +.+...+
T Consensus 75 avk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~ 115 (305)
T PRK12921 75 AVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYF 115 (305)
T ss_pred EecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhC
Confidence 999664 467888898888888877765556653 3444443
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0022 Score=54.70 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=88.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..+|..++..|++|.+-.++.+...++..... + ..++. .+.+++.+.||+|+.
T Consensus 9 tGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l-------------~--------~~i~~-~~~~dA~~~aDVVvL 66 (211)
T COG2085 9 TGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL-------------G--------PLITG-GSNEDAAALADVVVL 66 (211)
T ss_pred cChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh-------------c--------ccccc-CChHHHHhcCCEEEE
Confidence 6899999999999999999998666554443333111 0 11333 345567899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC----------------cCHH-HHhccCCCCCcEEE-ec------cCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS----------------FLPS-VLSEHSTHRSQFIV-AH------PVNP 257 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~----------------~~~~-~la~~~~~~~r~ig-~H------f~~p 257 (290)
+|| ++.-..+.+++...+. +.|+++.|-. -+.+ .+++.++.. +++. .| +-+.
T Consensus 67 AVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~ 142 (211)
T COG2085 67 AVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADL 142 (211)
T ss_pred ecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccC
Confidence 999 7778899999998877 6777743332 2223 333344433 3332 11 2222
Q ss_pred CCC--CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 258 PYF--IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 258 ~~~--~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++. .+-+-|+. -|.++.+.+.++.+.+|.
T Consensus 143 ~~~~~~~~v~vag---DD~~Ak~~v~~L~~~iG~ 173 (211)
T COG2085 143 AKPGGRRDVLVAG---DDAEAKAVVAELAEDIGF 173 (211)
T ss_pred CCcCCceeEEEec---CcHHHHHHHHHHHHhcCc
Confidence 222 22223333 378899999999999885
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0013 Score=59.74 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=88.3
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|.+|..||++... .|. . ....++++.
T Consensus 124 tvgIiG---~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-----~--------~~~~~l~el 170 (303)
T PRK06436 124 SLGILG---YGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-----S--------SIYMEPEDI 170 (303)
T ss_pred EEEEEC---cCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-----c--------cccCCHHHH
Confidence 345555 7999999999888889999999987321 000 0 012478888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCCC-CCcEEEeccCC--C---CCCCCeE
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHSTH-RSQFIVAHPVN--P---PYFIPLV 264 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~~-~~r~ig~Hf~~--p---~~~~~lv 264 (290)
+++||+|+.++|...+.+.-+-++....++++++++..+. ...-..+...+.. +....++=-|. | .+..+.|
T Consensus 171 l~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nv 250 (303)
T PRK06436 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNV 250 (303)
T ss_pred HhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCE
Confidence 9999999999998887766555677778999998873332 2333355555542 23333332221 2 2345788
Q ss_pred EEecC-C-CCCHHHHHHHHH
Q psy17416 265 EIVPA-A-WTSERVITRTRE 282 (290)
Q Consensus 265 Evv~~-~-~t~~e~~~~~~~ 282 (290)
-++|+ . .++++..+++..
T Consensus 251 iiTPHi~g~~t~e~~~~~~~ 270 (303)
T PRK06436 251 ILSPHVAGGMSGEIMQPAVA 270 (303)
T ss_pred EECCccccccCHHHHHHHHH
Confidence 88998 3 356666555443
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0029 Score=57.75 Aligned_cols=130 Identities=19% Similarity=0.154 Sum_probs=82.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+..... . . + +. ..++++.++.||+|+.
T Consensus 153 ~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~-----------~----~----------~~-~~~l~ell~~sDvv~l 202 (311)
T PRK08410 153 LGTIGKRVAKIAQAFGAKVVYYSTSGKNK----N-----------E----E----------YE-RVSLEELLKTSDIISI 202 (311)
T ss_pred CCHHHHHHHHHHhhcCCEEEEECCCcccc----c-----------c----C----------ce-eecHHHHhhcCCEEEE
Confidence 68999999999998999999999853210 0 0 0 11 2478889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccCC--C------CCC---CCeEEEe
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPVN--P------PYF---IPLVEIV 267 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~~--p------~~~---~~lvEvv 267 (290)
++|-..+-+.-+=++.-..++++++++..+-+ +.-..+.+.+.. +-+ .++=-|. | .+. .+.|-++
T Consensus 203 h~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilT 281 (311)
T PRK08410 203 HAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLIT 281 (311)
T ss_pred eCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEEC
Confidence 99988776555556777789999999743323 333355555542 223 3333221 1 111 2567788
Q ss_pred cCC-CCCHHHHHHHHH
Q psy17416 268 PAA-WTSERVITRTRE 282 (290)
Q Consensus 268 ~~~-~t~~e~~~~~~~ 282 (290)
|+- ..+.+...++..
T Consensus 282 PH~a~~t~e~~~~~~~ 297 (311)
T PRK08410 282 PHIAWASKEARKTLIE 297 (311)
T ss_pred CccccCCHHHHHHHHH
Confidence 874 334555544433
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00069 Score=68.97 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=82.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCC--CCChHHHhcccC-CCCceeeeccCCCCC----
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHST-HRSQFIVAHPVNPPY---- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts--~~~~~~l~~~~~-~~~r~~g~hf~~P~~---- 74 (290)
+|+++++.++|+|+.|+|.+ .-.++++++.+..++++++...+| .-.+..+.+.+. .+-|+++.|++.=..
T Consensus 55 ~~~~~~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~ 132 (735)
T PRK14806 55 EDLAEAVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGV 132 (735)
T ss_pred CCHHHHhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchh
Confidence 46788899999999999964 578999999998889987754443 223666766553 367999999975111
Q ss_pred --------CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 75 --------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 75 --------~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
.-..+.+.++..++++.++.+.+++..+|+.++.+..+
T Consensus 133 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~ 178 (735)
T PRK14806 133 HAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDVA 178 (735)
T ss_pred hhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence 12456778888899999999999999999988877443
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0013 Score=59.79 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=80.4
Q ss_pred CcHHhhc-ccCcEEEEcccCChHHHHHHHHHH-HhhcCCCcEEeecCC--CCChHHHhcccCCCCceeeeccCCCCCCCC
Q psy17416 2 PVLRECL-EDAIFIQESVPEILQIKHQVYRAI-DIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVNPPYFIP 77 (290)
Q Consensus 2 ~~l~~~~-~~~d~viea~~e~~~~K~~~~~~~-~~~~~~~~i~~snts--~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~ 77 (290)
+|+++.+ .++|+|+-|+|-. .=.+++.++ ...+++++++.+-+| ..++..+.+.++...+|+|.|++.++....
T Consensus 83 ~~~~e~~~~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~ 160 (304)
T PLN02256 83 RDPDDFCEEHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGK 160 (304)
T ss_pred CCHHHHhhCCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCc
Confidence 4566665 4799999999843 446777887 456789999988888 567777877775556899999999886421
Q ss_pred ----eeeEee------CCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 78 ----LVEIVP------AAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 78 ----lvEiv~------~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
-..++. .+.++++.++.+.++++.+|..++.+..+
T Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~e 205 (304)
T PLN02256 161 GGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCE 205 (304)
T ss_pred cccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 011111 15678899999999999999999887543
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0045 Score=56.43 Aligned_cols=140 Identities=18% Similarity=0.194 Sum_probs=85.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ .|.||..+|..+...|++|.++++.....+.+.. .| .. ..++++++
T Consensus 19 VGIIG---~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-----------~G--------------~~-v~sl~Eaa 69 (335)
T PRK13403 19 VAVIG---YGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-----------DG--------------FE-VMSVSEAV 69 (335)
T ss_pred EEEEe---EcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH-----------cC--------------CE-ECCHHHHH
Confidence 46666 8999999999999999999999865433222222 11 11 13788899
Q ss_pred ccCcEEEEccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCcCHHHHhccCCCC--CcEEEeccCCCCCCCC--------
Q psy17416 194 EDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR--SQFIVAHPVNPPYFIP-------- 262 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~--~r~ig~Hf~~p~~~~~-------- 262 (290)
+.||+|+.++|.. +. +.++ +++.+.++++++++-++ +..+ .... ...| ..++-.-|-.|-+..+
T Consensus 70 k~ADVV~llLPd~-~t-~~V~~~eil~~MK~GaiL~f~h-gfni-~~~~-i~pp~~vdv~mvaPKgpG~~vR~~y~~G~G 144 (335)
T PRK13403 70 RTAQVVQMLLPDE-QQ-AHVYKAEVEENLREGQMLLFSH-GFNI-HFGQ-INPPSYVDVAMVAPKSPGHLVRRVFQEGNG 144 (335)
T ss_pred hcCCEEEEeCCCh-HH-HHHHHHHHHhcCCCCCEEEECC-Ccce-ecCc-eeCCCCCeEEEECCCCCChHHHHHHHcCCC
Confidence 9999999999963 44 4665 57899999999886332 3322 1111 1111 2344444433333221
Q ss_pred ---eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 ---LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 ---lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
|+-|-. ..+-.+.+.+.++...+|-
T Consensus 145 vp~l~av~q--d~sg~a~~~ala~a~~iG~ 172 (335)
T PRK13403 145 VPALVAVHQ--DATGTALHVALAYAKGVGC 172 (335)
T ss_pred ceeEEEEEE--CCCCcHHHHHHHHHHHcCC
Confidence 222222 3344567778888888774
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0019 Score=58.99 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=83.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.+|+.+|..+...|++|..||++++.... . .......++++++
T Consensus 139 vgIvG---~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~---------------------~------~~~~~~~~l~e~l 188 (312)
T PRK15469 139 IGILG---AGVLGSKVAQSLQTWGFPLRCWSRSRKSWPG---------------------V------QSFAGREELSAFL 188 (312)
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCEEEEEeCCCCCCCC---------------------c------eeecccccHHHHH
Confidence 34444 7899999999999999999999986532110 0 0001135788899
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC--CCcCHHHHhccCCC-CCcEEEeccC--------CCCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST--SSFLPSVLSEHSTH-RSQFIVAHPV--------NPPYFIP 262 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t--s~~~~~~la~~~~~-~~r~ig~Hf~--------~p~~~~~ 262 (290)
++||+|+.++|...+.+.-+-++....++++++++... .-+.-..+...+.. +-+..++=-| +|.+..+
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999887777777888899999887333 23333355555542 2222333211 2334556
Q ss_pred eEEEecCC
Q psy17416 263 LVEIVPAA 270 (290)
Q Consensus 263 lvEvv~~~ 270 (290)
.|-++|+-
T Consensus 269 nvi~TPHi 276 (312)
T PRK15469 269 RVAITPHV 276 (312)
T ss_pred CeEECCcC
Confidence 77788864
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00019 Score=63.90 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=61.5
Q ss_pred CCcHHhhcccCcEEEE--------------cccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhccc----CC-C
Q psy17416 1 TPVLRECLEDAIFIQE--------------SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHS----TH-R 61 (290)
Q Consensus 1 ~~~l~~~~~~~d~vie--------------a~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~----~~-~ 61 (290)
++|++++++|||+|++ .+.++.++++++++++++.| |++++..-| -|..-++..+ .. |
T Consensus 61 ~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~t--NP~d~~t~~~~~~sg~~~ 137 (263)
T cd00650 61 TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVS--NPVDIITYLVWRYSGLPK 137 (263)
T ss_pred CCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec--CcHHHHHHHHHHHhCCCc
Confidence 5788999999999999 88899999999999999999 777544332 3555444333 22 5
Q ss_pred CceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 62 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 62 ~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
.|++|+. | -+....-..+++.+|..|-
T Consensus 138 ~kviG~~------------------~-ld~~r~~~~la~~l~v~~~ 164 (263)
T cd00650 138 EKVIGLG------------------T-LDPIRFRRILAEKLGVDPD 164 (263)
T ss_pred hhEEEee------------------c-chHHHHHHHHHHHhCCCcc
Confidence 7787775 4 4555566667777886443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0029 Score=54.05 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCC---HHHHHHHH---HHHHH-----HHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVL---SEQIENAK---NTIQH-----TLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~---~e~l~~a~---~~i~~-----~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
+|.+|..+|..+++.|. +++++|.+ +..+.+-. +.+.+ ....+.+. .+..........++ ..++
T Consensus 29 ~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~i---np~~~i~~~~~~i~-~~~~ 104 (200)
T TIGR02354 29 LGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEI---NPYTEIEAYDEKIT-EENI 104 (200)
T ss_pred cCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHH---CCCCEEEEeeeeCC-HhHH
Confidence 68999999999999998 79999998 55554311 00100 00000000 00000000111111 1345
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+.++++|+||+| .++.+.|..+++++....+...+++
T Consensus 105 ~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 105 DKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 5568899999999 7999999999999999888877776
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.011 Score=53.65 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=55.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+...|.+|.++|++++....+.. .|... + ...++.+.++++|+||.
T Consensus 160 ~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~~~-----------~-~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 160 FGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGLSP-----------F-HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCee-----------e-cHHHHHHHhCCCCEEEE
Confidence 6889999999999999999999999876544332 11100 0 12356667889999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++|..+ +-++..+.++++++++
T Consensus 217 t~p~~~-----i~~~~l~~~~~g~vII 238 (296)
T PRK08306 217 TIPALV-----LTKEVLSKMPPEALII 238 (296)
T ss_pred CCChhh-----hhHHHHHcCCCCcEEE
Confidence 998432 2234445677888877
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=58.14 Aligned_cols=123 Identities=20% Similarity=0.143 Sum_probs=79.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+.... +.+.. . .+... ++++.+++||+|+.
T Consensus 148 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-----------~--------------g~~~~-~l~ell~~aDiV~l 200 (526)
T PRK13581 148 LGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQ-----------L--------------GVELV-SLDELLARADFITL 200 (526)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh-----------c--------------CCEEE-cHHHHHhhCCEEEE
Confidence 6899999999999999999999985421 11111 0 11222 68888999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccC-------CCCCCCCeEEEecCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPV-------NPPYFIPLVEIVPAAW 271 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~-------~p~~~~~lvEvv~~~~ 271 (290)
++|-..+.+.-+-++..+.++++++++..+-+ +.-..+...+.. +-+-.++--| +|.+..+.|-++|+-.
T Consensus 201 ~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia 280 (526)
T PRK13581 201 HTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLG 280 (526)
T ss_pred ccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccc
Confidence 99988776555546777889999988743332 223355555432 2222233221 2444556777888743
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00029 Score=64.06 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=65.6
Q ss_pred CcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCC-cEEeecCCCCChHHHhcccCC-CCcee
Q psy17416 2 PVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTH-RSQFI 65 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~-~i~~snts~~~~~~l~~~~~~-~~r~~ 65 (290)
+|. +++++||+||.++ .+|.++++++++++.+.+++. .|++||.+++-..-+....+. |+|++
T Consensus 63 ~d~-~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~vi 141 (307)
T PRK06223 63 NDY-EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVI 141 (307)
T ss_pred CCH-HHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEE
Confidence 566 4799999999876 589999999999999999776 577788877666655554443 36677
Q ss_pred eeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEE
Q psy17416 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 108 (290)
Q Consensus 66 g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~ 108 (290)
|+- |..++...-..++++++..|-.
T Consensus 142 G~g------------------t~lds~r~~~~la~~l~v~~~~ 166 (307)
T PRK06223 142 GMA------------------GVLDSARFRTFIAEELNVSVKD 166 (307)
T ss_pred EeC------------------CCcHHHHHHHHHHHHhCcChhh
Confidence 663 5556667777788888875543
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0099 Score=51.66 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+...+...|++|+.||++++..+.+.. .| .++..+..+... -+..--.|-.
T Consensus 8 LGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-a~~a~sl~el~~----------~L~~pr~vWl 65 (300)
T COG1023 8 LGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-ATGAASLDELVA----------KLSAPRIVWL 65 (300)
T ss_pred cchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-CccccCHHHHHH----------hcCCCcEEEE
Confidence 7899999999999999999999999999888776 22 122111111111 1223344445
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEe-CCCCcCHH-HHhccCCCCCcEEEeccCCCCCC-------CCeEEEecCCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSS-STSSFLPS-VLSEHSTHRSQFIVAHPVNPPYF-------IPLVEIVPAAWT 272 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s-~ts~~~~~-~la~~~~~~~r~ig~Hf~~p~~~-------~~lvEvv~~~~t 272 (290)
.+|-- ++-.+++.+|.+.+.++-+++- ..|.+.-+ .-+..+..+ |+||++.-.- .-..-++.|
T Consensus 66 MvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~k----gi~flD~GTSGG~~G~~~G~~lMiGG--- 137 (300)
T COG1023 66 MVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEK----GIHFLDVGTSGGVWGAERGYCLMIGG--- 137 (300)
T ss_pred EccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhc----CCeEEeccCCCCchhhhcCceEEecC---
Confidence 55533 1356888999999999888873 23333222 222223222 7787543211 113446666
Q ss_pred CHHHHHHHHHHHHHc
Q psy17416 273 SERVITRTREIMTEI 287 (290)
Q Consensus 273 ~~e~~~~~~~~~~~l 287 (290)
++++++++..+++.+
T Consensus 138 ~~~a~~~~~pif~~l 152 (300)
T COG1023 138 DEEAVERLEPIFKAL 152 (300)
T ss_pred cHHHHHHHHHHHHhh
Confidence 899999999999876
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0046 Score=50.79 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|..|+.+|+.+...|..|.+++.+|...-+|.- ++ .+ +.++++++..+|++|-
T Consensus 31 YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~---------------dG----------f~-v~~~~~a~~~adi~vt 84 (162)
T PF00670_consen 31 YGKVGKGIARALRGLGARVTVTEIDPIRALQAAM---------------DG----------FE-VMTLEEALRDADIFVT 84 (162)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH---------------TT-----------E-EE-HHHHTTT-SEEEE
T ss_pred CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh---------------cC----------cE-ecCHHHHHhhCCEEEE
Confidence 6899999999999999999999999976544433 12 12 3467889999999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC---cCHHHHhcc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS---FLPSVLSEH 242 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~la~~ 242 (290)
++-..--+..+-| +.+++++|+++.++. +.+..+.+.
T Consensus 85 aTG~~~vi~~e~~----~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 85 ATGNKDVITGEHF----RQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp -SSSSSSB-HHHH----HHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CCCCccccCHHHH----HHhcCCeEEeccCcCceeEeecccccc
Confidence 7764332233333 358999999854442 344455443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0027 Score=51.99 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=83.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e-~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|..|...|+.|...|++|.+-.+... ..++|.+ .|+ + ..+.+|+++.+|+|+
T Consensus 12 yGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~-----------~Gf--------------~-v~~~~eAv~~aDvV~ 65 (165)
T PF07991_consen 12 YGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA-----------DGF--------------E-VMSVAEAVKKADVVM 65 (165)
T ss_dssp -SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH-----------TT---------------E-CCEHHHHHHC-SEEE
T ss_pred CChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH-----------CCC--------------e-eccHHHHHhhCCEEE
Confidence 578899999999999999998777665 5555555 222 1 357788999999999
Q ss_pred EccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCcCHHHHhccCCCC--CcEEEeccCCCCCCCC-----------eEEE
Q psy17416 201 ESVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR--SQFIVAHPVNPPYFIP-----------LVEI 266 (290)
Q Consensus 201 eavpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~--~r~ig~Hf~~p~~~~~-----------lvEv 266 (290)
..+|+.. -.++| +++.+.++++..+.. +.++.+- ......| ..++-.+|-.|-+..+ ++-|
T Consensus 66 ~L~PD~~--q~~vy~~~I~p~l~~G~~L~f-ahGfni~--~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV 140 (165)
T PF07991_consen 66 LLLPDEV--QPEVYEEEIAPNLKPGATLVF-AHGFNIH--YGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAV 140 (165)
T ss_dssp E-S-HHH--HHHHHHHHHHHHS-TT-EEEE-SSSHHHH--CTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEE
T ss_pred EeCChHH--HHHHHHHHHHhhCCCCCEEEe-CCcchhh--cCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEE
Confidence 9999777 66888 789999999998863 3344432 1222222 4567777755554322 2222
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk 289 (290)
- ...+-.+.+.+.++.+.+|-
T Consensus 141 ~--qD~sg~A~~~ala~A~~iG~ 161 (165)
T PF07991_consen 141 H--QDASGKAKELALAYAKAIGG 161 (165)
T ss_dssp E--E-SSS-HHHHHHHHHHHTTH
T ss_pred E--ECCCchHHHHHHHHHHHhCC
Confidence 2 34456777888888888773
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0059 Score=59.81 Aligned_cols=124 Identities=21% Similarity=0.103 Sum_probs=78.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+.... +.+.. . .+...+++++.+++||+|+.
T Consensus 146 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-----------~--------------g~~~~~~l~ell~~aDvV~l 199 (525)
T TIGR01327 146 LGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQ-----------L--------------GVELVDDLDELLARADFITV 199 (525)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh-----------c--------------CCEEcCCHHHHHhhCCEEEE
Confidence 6899999999999999999999975211 11111 1 11224578889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccCCC-CCcEEEecc-------CCCCCCCCeEEEecCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHSTH-RSQFIVAHP-------VNPPYFIPLVEIVPAAW 271 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~~~-~~r~ig~Hf-------~~p~~~~~lvEvv~~~~ 271 (290)
++|-..+.+.-+=++....++++++++..+-+- .-..+...+.. +-+..++=- -+|.+..+.|-++|+-.
T Consensus 200 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia 279 (525)
T TIGR01327 200 HTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLG 279 (525)
T ss_pred ccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCcc
Confidence 999877665444456666899999887333332 23355555432 222222221 23445566777888743
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=53.90 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|..||+.... . . . . ..++++.++.||+|+.
T Consensus 156 ~G~IG~~vA~~l~~fgm~V~~~~~~~~~-----~----------------~-~---------~-~~~l~ell~~sDiv~l 203 (317)
T PRK06487 156 HGELGGAVARLAEAFGMRVLIGQLPGRP-----A----------------R-P---------D-RLPLDELLPQVDALTL 203 (317)
T ss_pred CCHHHHHHHHHHhhCCCEEEEECCCCCc-----c----------------c-c---------c-ccCHHHHHHhCCEEEE
Confidence 6899999999999899999999975310 0 0 0 0 2368889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCC-CCcEEEeccC--------CCCCC--CCeEEEec
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPV--------NPPYF--IPLVEIVP 268 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~-~~r~ig~Hf~--------~p~~~--~~lvEvv~ 268 (290)
++|-+.+-+.-+=++.-..++++++++..+-+-. -..+...+.. +-+-.++=-| +|.+. .|.|-++|
T Consensus 204 ~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTP 283 (317)
T PRK06487 204 HCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTP 283 (317)
T ss_pred CCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECC
Confidence 9998887655555677778999999974333333 3355555542 2222222211 12221 56777888
Q ss_pred CCC-CCHHHHHHHHH
Q psy17416 269 AAW-TSERVITRTRE 282 (290)
Q Consensus 269 ~~~-t~~e~~~~~~~ 282 (290)
+-. .+.+..+++..
T Consensus 284 Hia~~t~e~~~~~~~ 298 (317)
T PRK06487 284 HSAWGSREARQRIVG 298 (317)
T ss_pred ccccCCHHHHHHHHH
Confidence 743 34444444433
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.021 Score=52.06 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=70.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|..+|..++..|++|.++++++. + +.. +.|..................++.+ ....+|+||.
T Consensus 13 ~GaiG~~lA~~L~~~g~~V~~~~r~~~--~-~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vil 78 (313)
T PRK06249 13 TGAIGGFYGAMLARAGFDVHFLLRSDY--E-AVR----------ENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLV 78 (313)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEeCCH--H-HHH----------hCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEE
Confidence 799999999999999999999999763 2 221 1221110000000001122234444 3678999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH-HhccCCCCCcEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV-LSEHSTHRSQFIV 251 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-la~~~~~~~r~ig 251 (290)
|++... -.++++.+.+.+.+++++.+-.-++...+ +...++ +.++++
T Consensus 79 avK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~ 126 (313)
T PRK06249 79 GLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLG 126 (313)
T ss_pred EecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEE
Confidence 999665 35788889999988888877666666544 443433 335443
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.009 Score=55.41 Aligned_cols=153 Identities=13% Similarity=-0.004 Sum_probs=88.7
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.+|+.+|..+...|.+|..||++...-.. . . .+...... ...........++++.
T Consensus 161 tvGIiG---~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~--~----~------~~~~~~~~--~~~~~~~~~~~~L~el 223 (347)
T PLN02928 161 TVFILG---YGAIGIELAKRLRPFGVKLLATRRSWTSEPE--D----G------LLIPNGDV--DDLVDEKGGHEDIYEF 223 (347)
T ss_pred EEEEEC---CCHHHHHHHHHHhhCCCEEEEECCCCChhhh--h----h------hccccccc--cccccccCcccCHHHH
Confidence 344554 7999999999999999999999987321110 0 0 00000000 0000000023578899
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCC-CCcEEEeccC--------CCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPV--------NPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~-~~r~ig~Hf~--------~p~~~~ 261 (290)
+++||+|+.++|-+.+-+.-+-++....++++++|+...-+-. -..+...+.. +-...++=-| +|.+..
T Consensus 224 l~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~ 303 (347)
T PLN02928 224 AGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKH 303 (347)
T ss_pred HhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcC
Confidence 9999999999998877655555677778999999974333333 3355555432 2222222222 234556
Q ss_pred CeEEEecCCC-CCHHHHHHHHH
Q psy17416 262 PLVEIVPAAW-TSERVITRTRE 282 (290)
Q Consensus 262 ~lvEvv~~~~-t~~e~~~~~~~ 282 (290)
+.|-++|+-. ...+..+++..
T Consensus 304 ~nviiTPHia~~t~~~~~~~~~ 325 (347)
T PLN02928 304 PNVIITPHVAGVTEYSYRSMGK 325 (347)
T ss_pred CCEEECCcCCCChHHHHHHHHH
Confidence 7888888753 34444444433
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.014 Score=52.37 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=82.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCC-CCeee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~-~~lvE 80 (290)
++..+.+++||+||=|++-+- + .+++..+.....++.++.|-.+++++..+.+......++++.|+..|... ..+.=
T Consensus 57 ~~~~e~~~~aDvVilav~p~~-~-~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~ 134 (279)
T PRK07679 57 HNKKELLTDANILFLAMKPKD-V-AEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATA 134 (279)
T ss_pred CCHHHHHhcCCEEEEEeCHHH-H-HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEE
Confidence 466778899999999998443 2 34567887777889999998899999999988765567999998766544 34554
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+...+++.++.+..++..+|+ ++.+
T Consensus 135 ~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 162 (279)
T PRK07679 135 ISPSKHATAEHIQTAKALFETIGL-VSVV 162 (279)
T ss_pred EeeCCCCCHHHHHHHHHHHHhCCc-EEEe
Confidence 457777889999999999999998 6666
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0019 Score=54.06 Aligned_cols=109 Identities=20% Similarity=0.142 Sum_probs=70.9
Q ss_pred EEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC
Q psy17416 107 VTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT 186 (290)
Q Consensus 107 v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 186 (290)
..+.+-+-|.++ .|.+|+.+|..+...|.+|..||++......... ... ..
T Consensus 32 ~~l~g~tvgIiG---~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~-------------------------~~~-~~ 82 (178)
T PF02826_consen 32 RELRGKTVGIIG---YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE-------------------------FGV-EY 82 (178)
T ss_dssp S-STTSEEEEES---TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH-------------------------TTE-EE
T ss_pred cccCCCEEEEEE---EcCCcCeEeeeeecCCceeEEecccCChhhhccc-------------------------ccc-ee
Confidence 334333445555 7999999999999999999999999875441111 011 13
Q ss_pred CchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC
Q psy17416 187 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST 244 (290)
Q Consensus 187 ~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~ 244 (290)
.++++.++.||+|+.++|-+.+-+.-+=++.-..++++++++...-+-.+. .+.+.+.
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 588889999999999999766544434456677899999998544333333 4555443
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0087 Score=53.60 Aligned_cols=104 Identities=23% Similarity=0.185 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
+|..+|..|.+.|++|++++++ +..+...+ .|..-...........+..++++++ +...|+||.|++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~-----------~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vK 68 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQ-----------EGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVK 68 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHH-----------CCcEEEecCCcEEEcccccccChhh-cCCCCEEEEecc
Confidence 6788888999999999999996 44433222 2321100000000012334556665 678999999999
Q ss_pred cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH-HhccC
Q psy17416 205 EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV-LSEHS 243 (290)
Q Consensus 205 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-la~~~ 243 (290)
... -.+.++.+.+.+.++++|.+-.-++...+ +....
T Consensus 69 s~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~ 106 (293)
T TIGR00745 69 AYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELL 106 (293)
T ss_pred chh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHh
Confidence 764 46788899999999888887655665443 44433
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0071 Score=57.73 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=42.2
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE 205 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe 205 (290)
.|.+|.++|++++.++.+...+++.+... + ...+++.++|+.+++++||+||+++-.
T Consensus 29 ~~~evvLvDid~er~~~~~~l~~~~~~~~---~----------~~~~i~~ttD~~eal~dADfVv~ti~v 85 (431)
T PRK15076 29 RDAEIALMDIDPERLEESEIVARKLAESL---G----------ASAKITATTDRREALQGADYVINAIQV 85 (431)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHhc---C----------CCeEEEEECCHHHHhCCCCEEeEeeee
Confidence 45699999999999887666555554321 1 124677789988899999999998765
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.012 Score=52.61 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=72.5
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccC--CCCceeeeccCC------CCC
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST--HRSQFIVAHPVN------PPY 74 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~--~~~r~~g~hf~~------P~~ 74 (290)
+++++ .+||+||-|+|.+. -.+++.++.. +++++++..-+|+ ...+...+. .+.+|++.|+.. |..
T Consensus 52 ~~~~~-~~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~--k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~ 125 (275)
T PRK08507 52 SFEEL-KKCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGST--KAKIIESVPKHIRKNFIAAHPMAGTENSGPKA 125 (275)
T ss_pred CHHHH-hcCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccc--hHHHHHHHHHhcCCCEEecCCcCcCchhhHHh
Confidence 45554 46999999998765 3557788877 7888888764443 223333221 236899999974 322
Q ss_pred ------CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEec
Q psy17416 75 ------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 111 (290)
Q Consensus 75 ------~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~ 111 (290)
.-..+-++++..++++.++.+..+++.+|..++.+..
T Consensus 126 a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 126 AIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred ccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 1235566777788999999999999999998888743
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.036 Score=48.41 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=79.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+++.+.++|+|+=|+|-. .=.++++++....+ +.++.|.+.++++..|...++...+++-+|+..|.....-+-.
T Consensus 58 ~~~~~~~~~~DiViiavp~~--~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~ 134 (245)
T PRK07634 58 TDWKQHVTSVDTIVLAMPPS--AHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISL 134 (245)
T ss_pred CChHHHHhcCCEEEEecCHH--HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeE
Confidence 57788899999999999965 33778888877655 5688999999999999998876567777887666543322222
Q ss_pred -eeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 82 -VPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 82 -v~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
..+...+++..+.+.+++..+|.... +
T Consensus 135 ~~~~~~~~~~~~~~v~~lf~~~G~~~~-~ 162 (245)
T PRK07634 135 YTMGQSVNETHKETLQLILKGIGTSQL-C 162 (245)
T ss_pred EeeCCCCCHHHHHHHHHHHHhCCCEEE-E
Confidence 24455688999999999999999775 5
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.013 Score=51.96 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=73.8
Q ss_pred HhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCC--CChHHHhcccCCCCceeeeccCCCC---------
Q psy17416 5 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPP--------- 73 (290)
Q Consensus 5 ~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~--~~~~~l~~~~~~~~r~~g~hf~~P~--------- 73 (290)
.++++++|+||=|+|- +.=.++++++....++++++.--+|. -++..+........+|+|.|++.=+
T Consensus 40 ~~~~~~~DlvvlavP~--~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~ 117 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPV--SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAAD 117 (258)
T ss_dssp HHHGGCCSEEEE-S-H--HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-T
T ss_pred HhHhcCCCEEEEcCCH--HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhc
Confidence 4679999999999974 45678999999999999999866554 2333444455456899999998766
Q ss_pred -CC--CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 74 -YF--IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 74 -~~--~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
.+ -..+=++++..++++.++.+.+|++.+|-.++.+.
T Consensus 118 ~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 118 ADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMD 157 (258)
T ss_dssp TTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--
T ss_pred ccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcC
Confidence 21 24566778888999999999999999999888764
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.012 Score=53.41 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=79.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccC----CCCceeeeccCCCCC--C
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST----HRSQFIVAHPVNPPY--F 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~----~~~r~~g~hf~~P~~--~ 75 (290)
++..++.+++|+||=++|..-.. .+++..+-..+++++++ .++||+++..+...+. ...+=+|+--|+|+- -
T Consensus 73 aS~aEAAa~ADVVIL~LPd~aaV-~eVl~GLaa~L~~GaIV-ID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 73 SDDKEAAKHGEIHVLFTPFGKGT-FSIARTIIEHVPENAVI-CNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CCHHHHHhCCCEEEEecCCHHHH-HHHHHHHHhcCCCCCEE-EECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 57888999999999999955545 44567777778888877 5678888886665443 245567777777763 2
Q ss_pred CCee--eEeeC------CCCCHHHHHHHHHHHHHhCCccEEEeccceee
Q psy17416 76 IPLV--EIVPA------AWTSERVITRTREIMTEIGMKPVTLTTEIRGF 116 (290)
Q Consensus 76 ~~lv--Eiv~~------~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf 116 (290)
|+-= -++.| ...+++.++.+.++++..||.+..+..+.-+-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~ 199 (341)
T TIGR01724 151 TPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSA 199 (341)
T ss_pred CCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcch
Confidence 3222 22222 33478999999999999999999986554333
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0042 Score=50.21 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.+|..++..+...| ..|.++|++++..++..+.+... + .. ....+..+.+.++|+||
T Consensus 27 ~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~-~~------------~~~~~~~~~~~~~Dvvi 86 (155)
T cd01065 27 AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------G-IA------------IAYLDLEELLAEADLII 86 (155)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------c-cc------------eeecchhhccccCCEEE
Confidence 5889999999998885 78999999998776544422210 0 00 01245555678999999
Q ss_pred EccccchH-HHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCC-CCCcEEEecc
Q psy17416 201 ESVPEILQ-IKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST-HRSQFIVAHP 254 (290)
Q Consensus 201 eavpe~~~-~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~-~~~r~ig~Hf 254 (290)
.|+|.... .....+. ...+++++++...++....+++..... .-.+++..|.
T Consensus 87 ~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~ 140 (155)
T cd01065 87 NTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLE 140 (155)
T ss_pred eCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHH
Confidence 99998763 1111111 123577887763332222224444433 2235555554
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0052 Score=55.84 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=76.8
Q ss_pred cchhHHHHHHHHHHc-------CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASA-------GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~-------G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
.|.||+.+|..+.+. ...|.+|-...+.-.+ .+.+...... ......+++....+.++..++|+.+++.
T Consensus 29 sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~---~heN~KYlpg~~lP~NvvAv~dl~ea~~ 104 (372)
T KOG2711|consen 29 SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINS---RHENVKYLPGIKLPENVVAVPDLVEAAK 104 (372)
T ss_pred cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhcc---ccccccccCCccCCCCeEecchHHHHhc
Confidence 689999999887642 1367777655443332 1111111111 1111234556667788888999999999
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
|||++|.++|-+. ...++++|..+.++++.-+|-++++..
T Consensus 105 dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 105 DADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred cCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceec
Confidence 9999999999877 679999999999999998887777664
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.013 Score=53.39 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=59.2
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..++..| .++.++|++++..+.....+.+.... .+ ....+. ..+++ .+++||+|
T Consensus 8 aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~-------~~------~~~~i~-~~~~~-~l~~aDIV 72 (306)
T cd05291 8 AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF-------LP------SPVKIK-AGDYS-DCKDADIV 72 (306)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc-------cC------CCeEEE-cCCHH-HhCCCCEE
Confidence 6889999999999888 58999999988765444433322110 00 001122 34555 47999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
|.+... |..+-+++.+++.+..+...+|
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vi 114 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFL 114 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 998875 3445567777888877654433
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.02 Score=54.30 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=78.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+.+... . .......++++.++.||+|+.
T Consensus 159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~-------------~~~~~~~~l~ell~~sDiVsl 209 (409)
T PRK11790 159 YGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------L-------------GNARQVGSLEELLAQSDVVSL 209 (409)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCcccc----------------c-------------CCceecCCHHHHHhhCCEEEE
Confidence 68999999999999999999999753210 0 011224588999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEec-c-C----------CCCCCCCeEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAH-P-V----------NPPYFIPLVEI 266 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~H-f-~----------~p~~~~~lvEv 266 (290)
++|-..+-+.-+=++....++++++++..+-+ +.-..+...+.. +-+-.++= | . +|.+..+.|-+
T Consensus 210 h~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvil 289 (409)
T PRK11790 210 HVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVIL 289 (409)
T ss_pred cCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEE
Confidence 99988776555546677789999998733322 223344444432 22222221 1 1 23445577778
Q ss_pred ecCCC
Q psy17416 267 VPAAW 271 (290)
Q Consensus 267 v~~~~ 271 (290)
+|+-.
T Consensus 290 TPHia 294 (409)
T PRK11790 290 TPHIG 294 (409)
T ss_pred CCcCC
Confidence 88743
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=47.66 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=68.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC-CCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL-KGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~-~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.+|.-+|..|.+.|++|.++++.+ .++...+ .|.. ... .............+..+.....|+||
T Consensus 6 ~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 6 AGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGP-DGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEET-TEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred cCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEec-ccceecccccccCcchhccCCCcEEE
Confidence 68999999999999999999999988 6554322 2221 111 00111111111122222457899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCCC
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTH 245 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~~ 245 (290)
.|+...- -.+.++.+.+.+.+++.|.+---++... .+.+..+.
T Consensus 73 v~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 73 VAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp E-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred EEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 9998655 4578889999999997777655556644 45445433
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.16 Score=44.74 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=79.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCC-Ceee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-PLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~-~lvE 80 (290)
+|..+.++++|+||=||+ +-. =.+++.++.....++.++.|-..++++.+|...++...+++-+=+..|...- -..=
T Consensus 35 ~~~~e~~~~aDiIiLaVk-P~~-i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~ 112 (245)
T TIGR00112 35 SDAQEAVKEADVVFLAVK-PQD-LEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTA 112 (245)
T ss_pred CChHHHHhhCCEEEEEeC-HHH-HHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEE
Confidence 466677889999999998 444 4577888887677889999999999999999988643456554444444332 3444
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
+..+...+++-.+.+.+++..+|+ ++.+.
T Consensus 113 ~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~ 141 (245)
T TIGR00112 113 IAANANVSEEDRALVLALFKAVGE-VVELP 141 (245)
T ss_pred EecCCCCCHHHHHHHHHHHHhCCC-EEEEC
Confidence 556777888889999999999997 66663
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.01 Score=55.72 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=66.5
Q ss_pred ccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 111 TEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 111 ~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
+-+-|+++ .|.+|+.+|..+...|++|..||+..... . + .. ...+++
T Consensus 116 gktvGIIG---~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~----------------~---------~~-~~~~l~ 162 (381)
T PRK00257 116 ERTYGVVG---AGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E----------------G---------DG-DFVSLE 162 (381)
T ss_pred cCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCccccc----c----------------c---------Cc-cccCHH
Confidence 34456666 79999999999999999999999753210 0 0 00 124688
Q ss_pred hhcccCcEEEEccccchH---HHHHHH-HHHhhhCCCCcEEEeCCCCcCH--HHHhccC
Q psy17416 191 ECLEDAIFIQESVPEILQ---IKHQVY-RAIDIFMSSNTILSSSTSSFLP--SVLSEHS 243 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~---~k~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~la~~~ 243 (290)
+.+++||+|+.++|-..+ .-+.++ ++....++++++++..+-+-.+ ..+.+.+
T Consensus 163 ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 163 RILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred HHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 888999999999996543 122333 4566678999998743333333 3444444
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.025 Score=45.45 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|..|..++..+...|+ ++.++|.+++.++.-...+++.... .........+..+++++||+||
T Consensus 10 G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~---------------~~~~~~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 10 GNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP---------------LPSPVRITSGDYEALKDADIVV 74 (141)
T ss_dssp SHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG---------------STEEEEEEESSGGGGTTESEEE
T ss_pred ChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh---------------cccccccccccccccccccEEE
Confidence 8899999999888765 7999999987544333323222110 0012222334445689999999
Q ss_pred Ecccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 201 ESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 201 eavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+.-. |..+-+++.+++.+..+...++.
T Consensus 75 itag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~viv 116 (141)
T PF00056_consen 75 ITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIV 116 (141)
T ss_dssp ETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE
T ss_pred EeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEE
Confidence 87733 23355666677888885554443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.038 Score=49.67 Aligned_cols=106 Identities=16% Similarity=0.278 Sum_probs=79.5
Q ss_pred HhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC--hHHHhcccCCCCceeeeccCCCCC------CC
Q psy17416 5 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPY------FI 76 (290)
Q Consensus 5 ~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~--~~~l~~~~~~~~r~~g~hf~~P~~------~~ 76 (290)
.++.++||+||=||| +..=-++++++....++++++.=-||.=. +..+......-.+|+|.|++.=+. ..
T Consensus 59 ~~~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~ 136 (279)
T COG0287 59 AEAAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFEN 136 (279)
T ss_pred hhhcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCC
Confidence 567889999999997 56667899999999999999997776532 233333332212899999987661 22
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
..+=+.+++.++.+.+..+.++++.+|-..+.+..+
T Consensus 137 ~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~e 172 (279)
T COG0287 137 AVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAE 172 (279)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChH
Confidence 445567777888999999999999999888877443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.074 Score=48.15 Aligned_cols=160 Identities=11% Similarity=0.091 Sum_probs=101.7
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
+.-+...+|+..- .++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|+.|-..++.= .+.
T Consensus 63 ~~~~~~l~~~~~~-~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~-----~~~ 136 (296)
T PRK14188 63 ASFEHKLPADTSQ-AELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATG-----ETA 136 (296)
T ss_pred EEEEEECCCCCCH-HHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCC-----CCC
Confidence 3334445555433 4677777777554 35666544 46677788888876677779999887653311 111
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEec-CCHHHHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d-~~~e~l~~a~~~i~~~~~~~~ 165 (290)
--|.|-..+.++++..+- + + ..-.-.+++| .+.||..+|.++.+.|++|++|+ +++
T Consensus 137 ~~PcTp~ai~~ll~~~~i-~--~-~Gk~V~viGr-s~~mG~PmA~~L~~~g~tVtv~~~rT~------------------ 193 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHG-D--L-SGLNAVVIGR-SNLVGKPMAQLLLAANATVTIAHSRTR------------------ 193 (296)
T ss_pred CcCCCHHHHHHHHHHhCC-C--C-CCCEEEEEcC-CcchHHHHHHHHHhCCCEEEEECCCCC------------------
Confidence 224455555666666542 1 1 1112234556 68999999999999999999995 432
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++++.++.||+||-|++..-.++.. .+++|++++.
T Consensus 194 ----------------------~l~e~~~~ADIVIsavg~~~~v~~~-------~lk~GavVID 228 (296)
T PRK14188 194 ----------------------DLPAVCRRADILVAAVGRPEMVKGD-------WIKPGATVID 228 (296)
T ss_pred ----------------------CHHHHHhcCCEEEEecCChhhcchh-------eecCCCEEEE
Confidence 2344678899999999965433222 2789998873
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.012 Score=55.20 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy17416 92 ITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK 171 (290)
Q Consensus 92 ~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~ 171 (290)
+..+..+.++.|. .+.+-+-|+++ .|.+|+.+|..+...|.+|..||+.... .
T Consensus 100 ~~~lL~l~r~~g~---~L~gktvGIIG---~G~IG~~vA~~l~a~G~~V~~~dp~~~~-----~---------------- 152 (378)
T PRK15438 100 FSSLLMLAERDGF---SLHDRTVGIVG---VGNVGRRLQARLEALGIKTLLCDPPRAD-----R---------------- 152 (378)
T ss_pred HHHHHHHhccCCC---CcCCCEEEEEC---cCHHHHHHHHHHHHCCCEEEEECCcccc-----c----------------
Confidence 3444444554443 34455667776 8999999999999999999999964211 0
Q ss_pred CCCChhhhhcccccCCchHhhcccCcEEEEccccchHH---HHHHH-HHHhhhCCCCcEEEeCCCCcCH--HHHhccC
Q psy17416 172 GSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQI---KHQVY-RAIDIFMSSNTILSSSTSSFLP--SVLSEHS 243 (290)
Q Consensus 172 ~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~---k~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~la~~~ 243 (290)
+. .. ...++++.+++||+|+.++|-..+- -+.++ ++....++++++++..+-+-.+ ..+.+.+
T Consensus 153 ~~--------~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 153 GD--------EG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred cc--------cc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH
Confidence 00 00 1357888899999999999955431 11223 4566678999999743333333 2444444
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.15 Score=47.62 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=89.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC- 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~- 192 (290)
-|.++ ++.||..+|..++++|+.|.+|+|+.+..++.++... . ..+|..+.++++-
T Consensus 6 iGviG---LaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~----------~----------~k~i~~~~sieefV 62 (473)
T COG0362 6 IGVIG---LAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERA----------K----------GKNIVPAYSIEEFV 62 (473)
T ss_pred eeeEe---hhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCc----------c----------CCCccccCcHHHHH
Confidence 45665 8999999999999999999999999998887766211 0 0234445555543
Q ss_pred --cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC-CCCcCHH-HHhccC-CCCCcEEEecc-------CCCCCC
Q psy17416 193 --LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS-TSSFLPS-VLSEHS-THRSQFIVAHP-------VNPPYF 260 (290)
Q Consensus 193 --l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~-ts~~~~~-~la~~~-~~~~r~ig~Hf-------~~p~~~ 260 (290)
++.---|+..|-.-. .--.++++|.+++.++=||+-. .|.+.-+ .--..+ ..--.|+|+.- .+.|.
T Consensus 63 ~~Le~PRkI~lMVkAG~-~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS- 140 (473)
T COG0362 63 ASLEKPRKILLMVKAGT-PVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS- 140 (473)
T ss_pred HHhcCCceEEEEEecCC-cHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-
Confidence 233333444333221 1246778899999999988842 2333222 111222 23357888775 44554
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHc
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEI 287 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~l 287 (290)
|+|| .++++.+.+..+++.+
T Consensus 141 -----iMpG--G~~eay~~v~pil~~I 160 (473)
T COG0362 141 -----IMPG--GQKEAYELVAPILTKI 160 (473)
T ss_pred -----cCCC--CCHHHHHHHHHHHHHH
Confidence 4444 4788999999998875
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.07 Score=49.00 Aligned_cols=121 Identities=17% Similarity=0.057 Sum_probs=76.8
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|+.+|..+. ..|.+|..||+....-. .. . ..+. ..++++.++.||+|+
T Consensus 153 ~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~--~~----------~--------------~~~~-~~~l~ell~~sDvv~ 205 (323)
T PRK15409 153 MGRIGMALAQRAHFGFNMPILYNARRHHKEA--EE----------R--------------FNAR-YCDLDTLLQESDFVC 205 (323)
T ss_pred ccHHHHHHHHHHHhcCCCEEEEECCCCchhh--HH----------h--------------cCcE-ecCHHHHHHhCCEEE
Confidence 6899999999887 77889999987632100 00 0 0112 247888999999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCCCCCcEEEe--cc--------CCCCCCCCeEEEec
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVA--HP--------VNPPYFIPLVEIVP 268 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~~~~r~ig~--Hf--------~~p~~~~~lvEvv~ 268 (290)
.++|-+.+-+.-+=++....++++++++...- -+.-..+...+... ++.|. =- -+|.+..+.|-++|
T Consensus 206 lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g-~i~gAaLDVf~~EP~~~~~pL~~~~nvilTP 284 (323)
T PRK15409 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG-EIHAAGLDVFEQEPLSVDSPLLSLPNVVAVP 284 (323)
T ss_pred EeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC-CeeEEEeecCCCCCCCCCchhhcCCCEEEcC
Confidence 99998887655555677778999999973332 23333555555421 22222 11 12334557777888
Q ss_pred CC
Q psy17416 269 AA 270 (290)
Q Consensus 269 ~~ 270 (290)
+-
T Consensus 285 Hi 286 (323)
T PRK15409 285 HI 286 (323)
T ss_pred cC
Confidence 74
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.042 Score=50.25 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|..||+.... . . . . ...++++.++.||+|+.
T Consensus 155 ~G~IG~~va~~l~~fg~~V~~~~~~~~~-----~-----------~----~----------~-~~~~l~ell~~sDiv~l 203 (314)
T PRK06932 155 KGCLGTEVGRLAQALGMKVLYAEHKGAS-----V-----------C----R----------E-GYTPFEEVLKQADIVTL 203 (314)
T ss_pred CCHHHHHHHHHHhcCCCEEEEECCCccc-----c-----------c----c----------c-ccCCHHHHHHhCCEEEE
Confidence 6899999999999889999999875320 0 0 0 0 02478889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccC--------CCCC----CCCeEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPV--------NPPY----FIPLVEI 266 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~--------~p~~----~~~lvEv 266 (290)
++|-..+-+.-+=++.-..++++++++...-+ +.-..+.+.+.. +-+-.++=-| +|.+ ..|.|-+
T Consensus 204 ~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvil 283 (314)
T PRK06932 204 HCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLI 283 (314)
T ss_pred cCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEE
Confidence 99988776555556777789999999743322 333355555542 2222233222 1111 2577788
Q ss_pred ecCCC-CCHHHHHHHHH
Q psy17416 267 VPAAW-TSERVITRTRE 282 (290)
Q Consensus 267 v~~~~-t~~e~~~~~~~ 282 (290)
+|+-. .+.+..+++..
T Consensus 284 TPHia~~t~e~~~~~~~ 300 (314)
T PRK06932 284 TPHIAWASDSAVTTLVN 300 (314)
T ss_pred CCccccCcHHHHHHHHH
Confidence 88743 34444444443
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.032 Score=50.67 Aligned_cols=92 Identities=20% Similarity=0.158 Sum_probs=60.1
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..++..| .++.++|++++.++.-...+++... .. ...++..+++++ ++++||+|
T Consensus 6 aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~-------------~~-~~~~i~~~~~~~-~l~~aDiV 70 (300)
T cd00300 6 AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASA-------------FL-ATGTIVRGGDYA-DAADADIV 70 (300)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcc-------------cc-CCCeEEECCCHH-HhCCCCEE
Confidence 5788999999998888 5899999998765543333332210 00 012334345665 68999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+..- +..+-+++.+++.+.++...+|.
T Consensus 71 Iitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv 113 (300)
T cd00300 71 VITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILV 113 (300)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 998863 33456667778888885544433
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.016 Score=53.13 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=78.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~-~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|+.+|..+...|.+|..||+ .+...... .......++++.++.||+|+
T Consensus 150 ~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~---------------------------~~~~~~~~Ld~lL~~sDiv~ 202 (324)
T COG0111 150 LGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV---------------------------DGVVGVDSLDELLAEADILT 202 (324)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc---------------------------ccceecccHHHHHhhCCEEE
Confidence 799999999999999999999999 44432110 11122477999999999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCC-CcC--HHHHhccCCC-CCcEEEeccC--------CCCCCCCeEEEec
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTS-SFL--PSVLSEHSTH-RSQFIVAHPV--------NPPYFIPLVEIVP 268 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts-~~~--~~~la~~~~~-~~r~ig~Hf~--------~p~~~~~lvEvv~ 268 (290)
..+|...+-+.=+=++.-..++++++++ |++ +-. -..+...+.. +-+-.++=.| .|.+..+.|-++|
T Consensus 203 lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TP 281 (324)
T COG0111 203 LHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTP 281 (324)
T ss_pred EcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECC
Confidence 9999888765444466777899999886 444 222 2244444431 1111111111 2445567777888
Q ss_pred CC
Q psy17416 269 AA 270 (290)
Q Consensus 269 ~~ 270 (290)
+-
T Consensus 282 Hi 283 (324)
T COG0111 282 HI 283 (324)
T ss_pred cc
Confidence 64
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.088 Score=47.71 Aligned_cols=161 Identities=10% Similarity=0.022 Sum_probs=105.4
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......||+. -+.++++.|+++-.++ -|+.--- +++.-..+......-..+=|+|+.|=..+.. ..+
T Consensus 63 i~~~~~~l~~~~-t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~~ 136 (301)
T PRK14194 63 IRSLEHRLPADT-SQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQ-----GRD 136 (301)
T ss_pred CEEEEEECCCCC-CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhc-----CCC
Confidence 344445566663 3447788888875543 3555433 5677778888887667777999887654321 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..|- ++ .+-.-+|++ | .+.||..+|.++.+.|++|++|++..
T Consensus 137 ~~~PcTp~aii~lL~~~~i-~l--~Gk~V~vIG-~-s~ivG~PmA~~L~~~gatVtv~~~~t------------------ 193 (301)
T PRK14194 137 VLTPCTPSGCLRLLEDTCG-DL--TGKHAVVIG-R-SNIVGKPMAALLLQAHCSVTVVHSRS------------------ 193 (301)
T ss_pred CCCCCcHHHHHHHHHHhCC-CC--CCCEEEEEC-C-CCccHHHHHHHHHHCCCEEEEECCCC------------------
Confidence 1235556666677776653 22 133344554 2 46999999999999999999997432
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++.+.+++||+||-|++..-.++..+ ++++++++
T Consensus 194 ---------------------~~l~e~~~~ADIVIsavg~~~~v~~~~-------ik~GaiVI 228 (301)
T PRK14194 194 ---------------------TDAKALCRQADIVVAAVGRPRLIDADW-------LKPGAVVI 228 (301)
T ss_pred ---------------------CCHHHHHhcCCEEEEecCChhcccHhh-------ccCCcEEE
Confidence 245567789999999999665444333 78999887
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.025 Score=51.63 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=59.5
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHH-HHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIEN-AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~-a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
.|.+|..+|..++..| .++.++|++++..+. +.. +... . ..... ..+. +++++ ++++||+
T Consensus 8 aG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~d-l~~~--------~--~~~~~----~~i~-~~d~~-~l~~aDi 70 (308)
T cd05292 8 AGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMD-LAHG--------T--PFVKP----VRIY-AGDYA-DCKGADV 70 (308)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHH-HHcc--------c--cccCC----eEEe-eCCHH-HhCCCCE
Confidence 5889999999999988 589999999876542 222 1110 0 00000 1222 45665 5899999
Q ss_pred EEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
||.+++. +..+-+++.++|.++.+.+.++.
T Consensus 71 Viita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv 114 (308)
T cd05292 71 VVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114 (308)
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9999986 34456677778888876665554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.072 Score=47.31 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=74.6
Q ss_pred cccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh---ccCCCC-CcEEEeccCC
Q psy17416 181 GLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS---EHSTHR-SQFIVAHPVN 256 (290)
Q Consensus 181 ~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la---~~~~~~-~r~ig~Hf~~ 256 (290)
.++..++|-.++++++|++|.=+|---. -..+.+++.+.+++|+||+ ||=+++...+. +.+++. -.+..+||-.
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 3556666666689999999998884331 2577888999999999885 66666665443 344433 3677888855
Q ss_pred CCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 257 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 257 p~~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-|-.-.-+=|+ ....++|.++++.++.++.||+
T Consensus 203 VPgt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 203 VPEMKGQVYIA-EGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred CCCCCCceEee-cccCCHHHHHHHHHHHHHhCCC
Confidence 44322222334 3577899999999999999984
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.14 Score=47.04 Aligned_cols=83 Identities=27% Similarity=0.219 Sum_probs=63.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|..+|..+...|.+|..||+++. .+..+. .+.++.. +++.++.+|+|+.
T Consensus 154 ~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~------------------------~~~~y~~-l~ell~~sDii~l 206 (324)
T COG1052 154 LGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKE------------------------LGARYVD-LDELLAESDIISL 206 (324)
T ss_pred CCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhh------------------------cCceecc-HHHHHHhCCEEEE
Confidence 589999999999988899999999874 111110 0122334 8889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts 232 (290)
.+|-..+-..-+=++..+.++++++|+ ||+
T Consensus 207 ~~Plt~~T~hLin~~~l~~mk~ga~lV-Nta 236 (324)
T COG1052 207 HCPLTPETRHLINAEELAKMKPGAILV-NTA 236 (324)
T ss_pred eCCCChHHhhhcCHHHHHhCCCCeEEE-ECC
Confidence 999998876666678888899999987 444
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.38 Score=42.45 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=68.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|..+.++++|+|+-|++ + +.-.+++.++. ..++.++.|-.+++++.+|........+++-+++..|.....-+-.
T Consensus 53 ~~~~~~~~~aDvVilav~-p-~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~ 128 (258)
T PRK06476 53 KDNQAVVDRSDVVFLAVR-P-QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTA 128 (258)
T ss_pred CCHHHHHHhCCEEEEEeC-H-HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeE
Confidence 467777899999999999 3 44477777773 4677788888899999999998865556666666655542222222
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEE
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVT 108 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~ 108 (290)
+.+ + .+.+..++..+|.....
T Consensus 129 ~~~---~---~~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 129 IYP---P---DPFVAALFDALGTAVEC 149 (258)
T ss_pred ecC---C---HHHHHHHHHhcCCcEEE
Confidence 221 1 25788999999986653
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.15 Score=47.95 Aligned_cols=137 Identities=16% Similarity=0.127 Sum_probs=78.3
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|+.+|..+. ..|.+|..||+.+.. ...........+ ... + .. ........++++.++.||+|
T Consensus 173 ~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l---~~~----~---~~--~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 173 AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFL---KAN----G---EQ--PVTWKRASSMEEVLREADVI 240 (386)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccc---ccc----c---cc--cccccccCCHHHHHhhCCEE
Confidence 6899999999975 679999999987642 111001000000 000 0 00 01122346899999999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCCC-CCcEEEeccC-------CCCCCCCeEEEecC
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHSTH-RSQFIVAHPV-------NPPYFIPLVEIVPA 269 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~~-~~r~ig~Hf~-------~p~~~~~lvEvv~~ 269 (290)
+.++|-..+-+.-+=++.-+.++++++++..+-+-.+ ..+...+.. +-...++=-| .|.+..+.|-++|+
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH 320 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH 320 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence 9999987766555556777789999999733323222 344444432 1111222111 12334567778887
Q ss_pred C
Q psy17416 270 A 270 (290)
Q Consensus 270 ~ 270 (290)
-
T Consensus 321 i 321 (386)
T PLN02306 321 I 321 (386)
T ss_pred c
Confidence 4
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.098 Score=49.49 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=55.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..+++.+...|.+|.++|+++.....+.. .|. . ..+++++++++|+||.
T Consensus 203 ~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-----------~G~--------------~-v~~leeal~~aDVVIt 256 (406)
T TIGR00936 203 YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-----------DGF--------------R-VMTMEEAAKIGDIFIT 256 (406)
T ss_pred CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-----------cCC--------------E-eCCHHHHHhcCCEEEE
Confidence 6899999999999999999999999975443332 111 1 1234567889999999
Q ss_pred ccccchHHHHHHHH-HHhhhCCCCcEEEe
Q psy17416 202 SVPEILQIKHQVYR-AIDIFMSSNTILSS 229 (290)
Q Consensus 202 avpe~~~~k~~~~~-~l~~~~~~~~ii~s 229 (290)
++.. +.++. +....++++++++.
T Consensus 257 aTG~-----~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 257 ATGN-----KDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred CCCC-----HHHHHHHHHhcCCCCcEEEE
Confidence 8762 23443 35668899998874
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.15 Score=48.38 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=56.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+...|.+|+++|+++..++.|.. .|.. ..++++++.++|+||+
T Consensus 210 ~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~~---------------~~~~~e~v~~aDVVI~ 263 (413)
T cd00401 210 YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGYE---------------VMTMEEAVKEGDIFVT 263 (413)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCCE---------------EccHHHHHcCCCEEEE
Confidence 6899999999999999999999999988776655 2220 1123456789999999
Q ss_pred ccccchHHHHHHH-HHHhhhCCCCcEEEe
Q psy17416 202 SVPEILQIKHQVY-RAIDIFMSSNTILSS 229 (290)
Q Consensus 202 avpe~~~~k~~~~-~~l~~~~~~~~ii~s 229 (290)
|+... .++ +...+.++++++++.
T Consensus 264 atG~~-----~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 264 TTGNK-----DIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred CCCCH-----HHHHHHHHhcCCCCcEEEE
Confidence 97632 233 334557889888863
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.3 Score=44.91 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=77.2
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHH-HHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCee-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLV- 79 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~-~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lv- 79 (290)
.|++++++.||+|+=++|.... .+++ .++...+++++++ +-.+++++..+....+..-+++-+.+-.|.+..+=.
T Consensus 65 ~s~~eaa~~ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~ 141 (330)
T PRK05479 65 LTVAEAAKWADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREY 141 (330)
T ss_pred CCHHHHHhcCCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhh
Confidence 3678899999999999996544 6787 7898889999999 888999999887666544567777766666622111
Q ss_pred --------eEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 80 --------EIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 80 --------Eiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
=+..+...+.+..+.+..++..+|-++.
T Consensus 142 ~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 142 EEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred hcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 1113445567889999999999998875
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.038 Score=50.39 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLS--EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~--e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
|..|..++..++..|+ +|.++|+++ +.++.....+.+. +.. .....+++.+++++ .+++||+
T Consensus 10 G~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~---~~~----------~~~~~~i~~~~d~~-~l~~aDi 75 (309)
T cd05294 10 GRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDA---LAA----------AGIDAEIKISSDLS-DVAGSDI 75 (309)
T ss_pred ChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhc---hhc----------cCCCcEEEECCCHH-HhCCCCE
Confidence 7889999999999886 499999954 2222111111110 000 00012455566766 4999999
Q ss_pred EEEcccc------c-h-------HHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEe
Q psy17416 199 IQESVPE------I-L-------QIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVA 252 (290)
Q Consensus 199 Vieavpe------~-~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~ 252 (290)
||.++.- + . ..-+++.+.|.+.++ ++++...++...+- .+....+. |.|++|+
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 9999851 1 1 335566667787775 55555444443322 22222333 3567776
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.059 Score=50.45 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCccEEEecccee----eEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHc
Q psy17416 92 ITRTREIMTEIGMKPVTLTTEIRG----FALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK 167 (290)
Q Consensus 92 ~~~~~~~~~~lgk~~v~v~~d~~g----f~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~ 167 (290)
+..+..+.+..+..++.. ...+| -++-=-.|.+|..++..+...|.+|.++|++++.++.+....
T Consensus 142 ~~aa~~~~~~~~g~~~~~-~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---------- 210 (370)
T TIGR00518 142 QVGAYHLEKTQGGRGVLL-GGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---------- 210 (370)
T ss_pred HHHHHHhHhhcCCcceee-cCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc----------
Confidence 344444555555444544 23222 121112589999999999999999999999998765443311
Q ss_pred CCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHH-HHHHHhhhCCCCcEEE
Q psy17416 168 GCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQ-VYRAIDIFMSSNTILS 228 (290)
Q Consensus 168 g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~-~~~~l~~~~~~~~ii~ 228 (290)
+.. .. .......++.+.++++|+||.|++-...-... +-++..+.++++.+|+
T Consensus 211 g~~---v~-----~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 211 GGR---IH-----TRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred Cce---eE-----eccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEE
Confidence 100 00 00001134566788999999997421100001 1233334567887766
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.16 Score=48.43 Aligned_cols=139 Identities=16% Similarity=0.199 Sum_probs=86.1
Q ss_pred cchhHHHHHHHHHHcCceeE------EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 122 HGLIGQAWAMIFASAGYKVS------LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~------l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
.|.+|..-|..+...|++|+ .+|.+....++|.+ .|+ . ..+++++++.
T Consensus 44 yGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-----------dGF--------------~-v~~~~Ea~~~ 97 (487)
T PRK05225 44 CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-----------NGF--------------K-VGTYEELIPQ 97 (487)
T ss_pred cCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-----------cCC--------------c-cCCHHHHHHh
Confidence 58888988888888898887 33333334443333 222 2 2467888999
Q ss_pred CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-----------eE
Q psy17416 196 AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-----------LV 264 (290)
Q Consensus 196 aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-----------lv 264 (290)
||+|+..+|... ...+++++.+.+++++.+.-++. ..+....-..+....++-.-|-.|-+..+ ++
T Consensus 98 ADvVviLlPDt~--q~~v~~~i~p~LK~Ga~L~fsHG-Fni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~ 174 (487)
T PRK05225 98 ADLVINLTPDKQ--HSDVVRAVQPLMKQGAALGYSHG-FNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLI 174 (487)
T ss_pred CCEEEEcCChHH--HHHHHHHHHhhCCCCCEEEecCC-ceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEE
Confidence 999999999883 78888999999999998874333 22322211222223455555543333221 33
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-|-+-...+-.+.+.+.++...+|-
T Consensus 175 AV~~~qD~~g~a~~~ala~a~~iG~ 199 (487)
T PRK05225 175 AVHPENDPKGEGMAIAKAWAAATGG 199 (487)
T ss_pred EEeecCCCCchHHHHHHHHHHHhCC
Confidence 3332234455677888888888774
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.13 Score=48.15 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=71.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhh---cCCCcEEeecCCCC--ChHHHhcccCCCCceeeeccCCCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF---MSSNTILSSSTSSF--LPSVLSEHSTHRSQFIVAHPVNPPYFI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~---~~~~~i~~snts~~--~~~~l~~~~~~~~r~~g~hf~~P~~~~ 76 (290)
+++++.+++||+||=|+|... =.++++++... .+++|++.=-+|.= ++..+ ....-+|+|.|++.=+...
T Consensus 43 ~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s 117 (370)
T PRK08818 43 LDPATLLQRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKS 117 (370)
T ss_pred CCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCC
Confidence 467788999999999998654 45678888765 68999998655543 22322 2223469999998866433
Q ss_pred Ceee---EeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 77 PLVE---IVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 77 ~lvE---iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
.+.| ++-.+...++.+..+.++++.+|..++.+..+
T Consensus 118 ~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~ae 156 (370)
T PRK08818 118 PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATPE 156 (370)
T ss_pred cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCHH
Confidence 2211 12223355566788999999999988887443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.1 Score=49.64 Aligned_cols=79 Identities=18% Similarity=0.102 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+...|.+|+++|+++.....+.. .|. . ..++++++.++|+||.
T Consensus 220 ~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G~--------------~-v~~l~eal~~aDVVI~ 273 (425)
T PRK05476 220 YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DGF--------------R-VMTMEEAAELGDIFVT 273 (425)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cCC--------------E-ecCHHHHHhCCCEEEE
Confidence 6899999999999999999999999976544332 111 1 1245667889999999
Q ss_pred ccccchHHHHHHHH-HHhhhCCCCcEEEeCC
Q psy17416 202 SVPEILQIKHQVYR-AIDIFMSSNTILSSST 231 (290)
Q Consensus 202 avpe~~~~k~~~~~-~l~~~~~~~~ii~s~t 231 (290)
|+. + +.++. +....++++++++..+
T Consensus 274 aTG-~----~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 274 ATG-N----KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CCC-C----HHHHHHHHHhcCCCCCEEEEcC
Confidence 874 2 23443 5666789999887433
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.25 Score=44.46 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=104.1
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-.-..+|+..- .++++.|+++-.+ |-|+.--- .++.-..+.....--..+=|+|++|-..+.. ..+
T Consensus 62 i~~~~~~l~~~~~~-~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~~ 135 (284)
T PRK14179 62 FKSEVVRLPETISQ-EELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWS-----GRP 135 (284)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhC-----CCC
Confidence 44445566776433 4677778777544 35666543 5667777888887666777999988765431 112
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..|- ++ .+-.-++++ | .+.||+-+|.+|.+.|+.|++|...
T Consensus 136 ~~~PcTp~avi~lL~~~~i-~l--~Gk~v~vIG-~-S~ivG~Pla~lL~~~gatVtv~~s~------------------- 191 (284)
T PRK14179 136 VMIPCTPAGIMEMFREYNV-EL--EGKHAVVIG-R-SNIVGKPMAQLLLDKNATVTLTHSR------------------- 191 (284)
T ss_pred CCcCCCHHHHHHHHHHhCC-CC--CCCEEEEEC-C-CCcCcHHHHHHHHHCCCEEEEECCC-------------------
Confidence 2235555556666666543 11 122223332 3 5889999999999999999988210
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++.+.+++||+||-|++..-.++.. .++++++++-
T Consensus 192 --------------------t~~l~~~~~~ADIVI~avg~~~~v~~~-------~ik~GavVID 228 (284)
T PRK14179 192 --------------------TRNLAEVARKADILVVAIGRGHFVTKE-------FVKEGAVVID 228 (284)
T ss_pred --------------------CCCHHHHHhhCCEEEEecCccccCCHH-------HccCCcEEEE
Confidence 235666789999999999955544333 3789998873
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.072 Score=51.12 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=61.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|+.+...|.+|+++++++.....+.. .|. . ..+++++++.+|+||.
T Consensus 262 yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G~--------------~-vv~leEal~~ADVVI~ 315 (477)
T PLN02494 262 YGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EGY--------------Q-VLTLEDVVSEADIFVT 315 (477)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cCC--------------e-eccHHHHHhhCCEEEE
Confidence 6999999999999999999999999876544433 111 1 1245677889999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC---CcCHHHHhcc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS---SFLPSVLSEH 242 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts---~~~~~~la~~ 242 (290)
+.... .-+..+.-+.++++++++..+. -+....+.+.
T Consensus 316 tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 316 TTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 66522 1233555667999999874333 3334444443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.049 Score=49.59 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=63.5
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhh-cCCCcEEeecCCCCChHHHhcccCCCCceeeeccC--------CC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPV--------NP 72 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~-~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~--------~P 72 (290)
++++++++++|+|+-++|. +.-++++.++... .++++++.+.|..++..... .....+.-+|. .|
T Consensus 39 ~~~~~~~~~advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~----~~s~~~~~~~~~~~v~~i~gp 112 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTR----TPSQIWQAAFPNHPVVVLSGP 112 (308)
T ss_pred CCHHHHHhcCCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCc----CHHHHHHHHcCCCceEEEECC
Confidence 4788899999999999997 3677788998764 68889888877655544211 11112222222 22
Q ss_pred CCC------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 73 PYF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 73 ~~~------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
... .+..=++. ..+++..+.+..++...+..+... .|.
T Consensus 113 ~~a~ei~~~~~~~~~~a--g~~~~~~~~v~~ll~~~~~~~~~~-~d~ 156 (308)
T PRK14619 113 NLSKEIQQGLPAATVVA--SRDLAAAETVQQIFSSERFRVYTN-SDP 156 (308)
T ss_pred CcHHHHhcCCCeEEEEE--eCCHHHHHHHHHHhCCCcEEEEec-CCc
Confidence 110 01111111 236788888999999888766654 443
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.094 Score=46.54 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=74.2
Q ss_pred cccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhcc---CCCC-CcEEEeccCC
Q psy17416 181 GLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH---STHR-SQFIVAHPVN 256 (290)
Q Consensus 181 ~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~---~~~~-~r~ig~Hf~~ 256 (290)
.++..++|-.++++++|++|.=+|---. -..+.+++.+.+++|+||+ ||=+++...+... +++. -.+..+||-.
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 4556666666689999999998884321 2577889999999999885 6666666655543 3333 3677888865
Q ss_pred CCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 257 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 257 p~~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-|-.-.-+ .+.....++|.++++.++.++.||+
T Consensus 205 VPgt~Gq~-~i~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 205 VPEMKGQV-YIAEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred CCCCCCce-ecccccCCHHHHHHHHHHHHHhCCC
Confidence 44221111 1234577999999999999999984
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.16 Score=45.56 Aligned_cols=104 Identities=13% Similarity=-0.012 Sum_probs=78.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCe-ee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL-VE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~l-vE 80 (290)
+|.++.++++|+||-|++ ...=.++++++....++++++.|-..++++.+|...++. .+++-+=+.-|...-.- .=
T Consensus 56 ~~~~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~ 132 (277)
T PRK06928 56 DNEAEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSL 132 (277)
T ss_pred CCHHHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEE
Confidence 567778899999999998 333447888888888889999999999999999998753 36665555555443322 23
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..++..+++-.+.+..++..+|+ ++.+
T Consensus 133 ~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 160 (277)
T PRK06928 133 VAHAETVNEANKSRLEETLSHFSH-VMTI 160 (277)
T ss_pred EecCCCCCHHHHHHHHHHHHhCCC-EEEE
Confidence 345667788999999999999998 5566
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.17 Score=46.07 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=73.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|.-++..+.+.|.+|.++.+++. +++..+ .|..-..... .......+.+..+.+..+|+||.
T Consensus 8 aGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~--~~~~~~~~~~~~~~~~~~Dlviv 73 (307)
T COG1893 8 AGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGG--NFTTPVVAATDAEALGPADLVIV 73 (307)
T ss_pred CcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCC--ccccccccccChhhcCCCCEEEE
Confidence 689999999999999988888888775 554444 2332211111 11111222333345779999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH-HhccCCCCCcEEEecc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV-LSEHSTHRSQFIVAHP 254 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-la~~~~~~~r~ig~Hf 254 (290)
++-.-. -.+.++.+.+.++++++|.+.--++...+ +....+....+.|+=+
T Consensus 74 ~vKa~q--~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~ 125 (307)
T COG1893 74 TVKAYQ--LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTT 125 (307)
T ss_pred Eecccc--HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEee
Confidence 987544 56888999999999998876555555555 4444333322444443
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.23 Score=44.65 Aligned_cols=162 Identities=16% Similarity=0.180 Sum_probs=105.6
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-.-..+|+.. +.++++.|+++-.+ |-|+.--- .++...++.....--..+=|+|++|-..+.. ...
T Consensus 62 i~~~~~~l~~~~~-~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 135 (285)
T PRK14189 62 FHSLKDRYPADLS-EAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMT-----GQP 135 (285)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhC-----CCC
Confidence 3444445566543 44778888887554 34666544 5677778888887667777999998776432 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..|- .+ ....-.+++| .+..|+-++.++.+.|..|++...
T Consensus 136 ~~~PcTp~aii~lL~~~~i---~l-~Gk~vvViGr-s~iVGkPla~lL~~~~atVt~~hs-------------------- 190 (285)
T PRK14189 136 LFRPCTPYGVMKMLESIGI---PL-RGAHAVVIGR-SNIVGKPMAMLLLQAGATVTICHS-------------------- 190 (285)
T ss_pred CCcCCCHHHHHHHHHHcCC---CC-CCCEEEEECC-CCccHHHHHHHHHHCCCEEEEecC--------------------
Confidence 1235556666677776652 11 1222234444 466799999999999999987431
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
-+.++.+.+++||+||-|++ +..++.. ..++++++++.
T Consensus 191 -------------------~t~~l~~~~~~ADIVV~avG-----~~~~i~~--~~ik~gavVID 228 (285)
T PRK14189 191 -------------------KTRDLAAHTRQADIVVAAVG-----KRNVLTA--DMVKPGATVID 228 (285)
T ss_pred -------------------CCCCHHHHhhhCCEEEEcCC-----CcCccCH--HHcCCCCEEEE
Confidence 13466667899999999999 4445553 67889998873
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.041 Score=51.85 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=36.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHH---------HHHHHHHHhhcCCCcEEeecCCCCChH
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIK---------HQVYRAIDIFMSSNTILSSSTSSFLPS 52 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K---------~~~~~~~~~~~~~~~i~~snts~~~~~ 52 (290)
+|.++++++||+||+|||++++.| .++.+.+.+ .+++.++ ...||+|++
T Consensus 65 ~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lV-V~~STv~pg 122 (388)
T PRK15057 65 LDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVM-VIKSTVPVG 122 (388)
T ss_pred cchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEE-EEeeecCCc
Confidence 457788899999999999998777 355567766 4666655 455666665
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.1 Score=47.31 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=66.2
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHH--HHHhhcCCCcEEeecCCCCChH---HHhcccC-CCCceeeeccCCCCC-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPY- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~--~~~~~~~~~~i~~snts~~~~~---~l~~~~~-~~~r~~g~hf~~P~~- 74 (290)
+++.+++++||+||.|+|.+..++.-++. .+-+.+++++++ .|+|+.++. ++++.+. +.-+++-..-..-+.
T Consensus 49 ~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lv-id~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~ 127 (296)
T PRK15461 49 ASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALV-IDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDN 127 (296)
T ss_pred CCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHH
Confidence 56788899999999999999888865543 344456777776 566666665 5555443 222232221111111
Q ss_pred CC-CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 75 FI-PLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 75 ~~-~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.. .-.=++.| .+++.++++..+++.+|+..+.+
T Consensus 128 a~~g~l~~~~g--g~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 128 AITGTLLLLAG--GTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred HHhCcEEEEEC--CCHHHHHHHHHHHHHHcCCeEee
Confidence 00 11113333 37889999999999999977766
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.087 Score=48.22 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..+...|. ++.++|++.+.+..-...+++... .. ....+. +++++ ++++||+|
T Consensus 14 aG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----------~~---~~~~i~-~~~~~-~~~~adiv 77 (315)
T PRK00066 14 DGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----------FT---SPTKIY-AGDYS-DCKDADLV 77 (315)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----------cc---CCeEEE-eCCHH-HhCCCCEE
Confidence 58999999999988887 799999988765433332332210 00 001233 35565 58999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
|.+.-. |..+-+++..++.++.+...++
T Consensus 78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vi 119 (315)
T PRK00066 78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFL 119 (315)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 986543 3334566666777776554443
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.04 Score=47.05 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=36.6
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEee
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 44 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~s 44 (290)
++.+.++++|+|||| .|+.+.|+.++.++.+..+..+++++
T Consensus 103 ~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 103 NIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred HHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 456678999999999 79999999999999999998888874
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.077 Score=48.51 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=59.5
Q ss_pred eeeEEecccchhHHHHHHHHH--HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFA--SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~--~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-++++ .|.+|+.++..+. ..+.+|.+|+++++..++..+.+++ .|. .+....++++
T Consensus 128 v~iiG---~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~------------~~~~~~~~~~ 185 (314)
T PRK06141 128 LLVVG---TGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF------------DAEVVTDLEA 185 (314)
T ss_pred EEEEC---CcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC------------ceEEeCCHHH
Confidence 35565 6889998876444 3457899999999887665553321 110 1233567788
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts 232 (290)
++.+||+|+-|.+... .++.. +.+++++.|...++
T Consensus 186 av~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 186 AVRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred HHhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 8999999999998663 33321 45788886654333
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.086 Score=48.19 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=57.4
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..+...|. ++.++|.+++.++.-...+.... ... ....+..+.++++ +++||+|
T Consensus 11 aG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~--------~~~~v~~~~dy~~-~~~adiv 75 (312)
T cd05293 11 VGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL--------KNPKIEADKDYSV-TANSKVV 75 (312)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC--------CCCEEEECCCHHH-hCCCCEE
Confidence 68999999999888876 78999998865433222222210 000 0125555678885 8999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.-. |..+-+++.+++.++.+.+.+|.
T Consensus 76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~viv 118 (312)
T cd05293 76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLV 118 (312)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 985432 12234556667888865555444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.094 Score=49.92 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=61.7
Q ss_pred CceeEEecCC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccc---------
Q psy17416 137 GYKVSLYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI--------- 206 (290)
Q Consensus 137 G~~V~l~d~~-~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~--------- 206 (290)
+-++.++|++ ++.++......++..++. + ..-.+..|+|..+++.+||+||.++-..
T Consensus 29 ~~ei~L~Did~~~rl~~v~~~~~~~~~~~-------~------~~~~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de 95 (419)
T cd05296 29 VTELVLVDIDEEEKLEIVGALAKRMVKKA-------G------LPIKVHLTTDRREALEGADFVFTQIRVGGLEARALDE 95 (419)
T ss_pred CCEEEEecCChHHHHHHHHHHHHHHHHhh-------C------CCeEEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhh
Confidence 4689999999 888766444444443321 0 0124667899999999999999664211
Q ss_pred -----h--------------------HHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCCCCcEEEec
Q psy17416 207 -----L--------------------QIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQFIVAH 253 (290)
Q Consensus 207 -----~--------------------~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~~~r~ig~H 253 (290)
. .+-+++.+++.+.++ ++++. ||-..+-...+.... +.|++|+-
T Consensus 96 ~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~P-da~lin~TNP~~ivt~a~~k~~--~~rviGlc 166 (419)
T cd05296 96 RIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAP-DAWLINFTNPAGIVTEAVLRHT--GDRVIGLC 166 (419)
T ss_pred hhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHHHhc--cCCEEeeC
Confidence 1 345577778888875 45444 454443333332222 56677764
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.27 Score=44.01 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=83.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE- 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE- 80 (290)
+|.++.+++||+||=|++ + ..=.++++++.....+++++.|=-.++++.+|...+..+.+++-+=+.-|...-.-+=
T Consensus 55 ~~~~e~~~~aDiIiLavk-P-~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~ 132 (272)
T PRK12491 55 TNNNEVANSADILILSIK-P-DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSA 132 (272)
T ss_pred CCcHHHHhhCCEEEEEeC-h-HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEE
Confidence 466777899999999999 3 5566778888888889999999999999999999987556777666666654433333
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+...+++-.+.+.+++..+|+. +.+
T Consensus 133 ~~~~~~~~~~~~~~v~~lf~~~G~~-~~~ 160 (272)
T PRK12491 133 LCFNEMVTEKDIKEVLNIFNIFGQT-EVV 160 (272)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCCE-EEE
Confidence 3466777888899999999999984 666
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.23 Score=44.24 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=73.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCC-CCeee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~-~~lvE 80 (290)
+|.++.+.++|+|+-|++ ...=.++++++....+++.++.|-++.+++..|....+ .+++-+++.-|... .-..=
T Consensus 54 ~~~~~~~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~ 129 (273)
T PRK07680 54 KTIEEVISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASL 129 (273)
T ss_pred CCHHHHHHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEE
Confidence 466777899999999996 33335677888777888889999999999999998774 23333333222111 11112
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
+..+...+++..+.+.+++..+|. ++.+..+
T Consensus 130 ~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e~ 160 (273)
T PRK07680 130 FTFGSRCSEEDQQKLERLFSNIST-PLVIEED 160 (273)
T ss_pred EeeCCCCCHHHHHHHHHHHHcCCC-EEEEChH
Confidence 234666678888999999999995 7777433
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.074 Score=48.83 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|..|..++..+...|+ ++.++|+++ ....+++ +.+ .. .......+..++++.+++++||+||
T Consensus 28 G~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D-l~~------------~~--~~~~i~~~~~~~d~~~~l~~aDiVV 91 (323)
T PLN00106 28 GGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD-VSH------------IN--TPAQVRGFLGDDQLGDALKGADLVI 91 (323)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEch-hhh------------CC--cCceEEEEeCCCCHHHHcCCCCEEE
Confidence 8899999999987665 899999977 1111111 000 00 0000111123455667899999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCcEEEeCCCCc----CHHH-HhccCC-CCCcEEEec
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNTILSSSTSSF----LPSV-LSEHST-HRSQFIVAH 253 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~----~~~~-la~~~~-~~~r~ig~H 253 (290)
.+. +.|..+-+++++++.++.++..+++++.-.- .++. +..... .|.+++|+-
T Consensus 92 itAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 92 IPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 654 3344566677777888775554444222221 2332 223332 356777765
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.21 Score=45.40 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|.-+|..+.+.|++|+++++..+.++...+ +.|..-.. ......-.... .+.+ .....|+||.
T Consensus 10 aGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~-~g~~~~~~~~~-~~~~-~~~~~D~viv 76 (305)
T PRK05708 10 AGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVE-QGQASLYAIPA-ETAD-AAEPIHRLLL 76 (305)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEee-CCcceeeccCC-CCcc-cccccCEEEE
Confidence 6899999999999999999999998876654433 11211000 00000001111 1112 2457899999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHST 244 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~ 244 (290)
|+=..- -.+.++.+.+.+.+++++.+---++... .++..+.
T Consensus 77 ~vK~~~--~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 77 ACKAYD--AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred ECCHHh--HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 986443 3467788999999999887655555544 4544443
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=46.60 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..++..|+ ++.++|++.+.+..-...+.+... .. . ....++ ..+++ ++++||+|
T Consensus 4 aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~------~~-~------~~~~i~-~~~~~-~~~daDiv 68 (299)
T TIGR01771 4 AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS------FL-P------TPKKIR-SGDYS-DCKDADLV 68 (299)
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc------cc-C------CCeEEe-cCCHH-HHCCCCEE
Confidence 58889999999888776 799999987654332222222110 00 0 001233 34555 68999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
|.+.-. |..+-+++..++.+..+...+|
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 110 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFL 110 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 986653 3345566667788775444433
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.13 Score=49.14 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=38.8
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
.+-++.++|.++++++...+..++..++. + ..-++..|+|..+|+.+||+||.++
T Consensus 28 ~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-------g------~~~~v~~ttD~~~Al~gADfVi~~i 82 (425)
T cd05197 28 PISEVTLYDIDEERLDIILTIAKRYVEEV-------G------ADIKFEKTMDLEDAIIDADFVINQF 82 (425)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHHHhh-------C------CCeEEEEeCCHHHHhCCCCEEEEee
Confidence 35689999999999877444444433321 1 0125677999999999999999654
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.18 Score=46.33 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=59.0
Q ss_pred eeeEEecccchhHHHHHHHHH--HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFA--SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~--~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ .|.+++..+..+. ....+|.+||++++..+...+++++ .|. .+....+.++
T Consensus 131 lgiiG---~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~------------~v~~~~~~~e 188 (325)
T TIGR02371 131 LGIIG---AGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV------------PVRAATDPRE 188 (325)
T ss_pred EEEEC---CCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC------------cEEEeCCHHH
Confidence 46776 6777776443333 3456899999999987765554331 110 1234678888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
++++||+|+.|+|..- .++. .+.+++++.|..-.
T Consensus 189 av~~aDiVitaT~s~~----P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 189 AVEGCDILVTTTPSRK----PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred HhccCCEEEEecCCCC----cEec--HHHcCCCCEEEecC
Confidence 9999999999998754 3332 23568998776433
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.5 Score=40.40 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=90.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh-hcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE-CLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~-~l~~aDlVi 200 (290)
+|.||.-.|..+.++|+.|...||++. +.+.+++... ..+++.+ +-+..|+|+
T Consensus 60 fGnmGqflAetli~aGh~li~hsRsdy--ssaa~~yg~~------------------------~ft~lhdlcerhpDvvL 113 (480)
T KOG2380|consen 60 FGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEKYGSA------------------------KFTLLHDLCERHPDVVL 113 (480)
T ss_pred cCcHHHHHHHHHHhcCceeEecCcchh--HHHHHHhccc------------------------ccccHHHHHhcCCCEEE
Confidence 799999999999999999999999873 3333322211 1122222 336789999
Q ss_pred EccccchHHHHHHHHHHhhh-CCCCcEEEeCCC--CcCHHHHhccCCCCCcEEEeccCCCCC-C------CCeEEEe-c-
Q psy17416 201 ESVPEILQIKHQVYRAIDIF-MSSNTILSSSTS--SFLPSVLSEHSTHRSQFIVAHPVNPPY-F------IPLVEIV-P- 268 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~-~~~~~ii~s~ts--~~~~~~la~~~~~~~r~ig~Hf~~p~~-~------~~lvEvv-~- 268 (290)
.|+. ..-...+++..-.. ++.++++..-+| -...+.+.+-++..-.++-.|++..|. . .|+|-+- +
T Consensus 114 lcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRi 191 (480)
T KOG2380|consen 114 LCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRI 191 (480)
T ss_pred EEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeec
Confidence 9987 44455677766655 778999985444 444555555665556889999976664 1 1454431 1
Q ss_pred -CCCCCHHHHHHHHHHHHHcC
Q psy17416 269 -AAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 269 -~~~t~~e~~~~~~~~~~~lg 288 (290)
-...-+|-.+.+.+.+...|
T Consensus 192 g~~~~r~ercE~fleIf~ceg 212 (480)
T KOG2380|consen 192 GYAASRPERCEFFLEIFACEG 212 (480)
T ss_pred cccccchHHHHHHHHHHHhcC
Confidence 12334777787777777665
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.21 Score=47.79 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=62.4
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccc----------
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI---------- 206 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~---------- 206 (290)
+-++.++|.++++++......++..++ .| ..-++..|+|..+|+.+||+||-++-.-
T Consensus 29 ~~ei~L~DId~~rl~~v~~l~~~~~~~---~g----------~~~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~ 95 (437)
T cd05298 29 LRELVLYDIDAERQEKVAEAVKILFKE---NY----------PEIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEK 95 (437)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHh---hC----------CCeEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHh
Confidence 468999999999987744444433322 11 1135677999999999999999654322
Q ss_pred ------------------------hHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHhccCCCCCcEEEec
Q psy17416 207 ------------------------LQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLSEHSTHRSQFIVAH 253 (290)
Q Consensus 207 ------------------------~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la~~~~~~~r~ig~H 253 (290)
..+-.++.+++.+.+++.-+|- ||-...-...+... ....|++|+.
T Consensus 96 Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~-~~~~kviGlC 166 (437)
T cd05298 96 IPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL-FPNARILNIC 166 (437)
T ss_pred HHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH-CCCCCEEEEC
Confidence 1244567778888874444333 44443333233222 2235788765
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.93 Score=40.82 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=101.4
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......+|+. -+.++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|++|-..+.. ..+
T Consensus 63 i~~~~~~l~~~~-s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 136 (285)
T PRK10792 63 FVSRSYDLPETT-SEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQ-----RIP 136 (285)
T ss_pred CEEEEEECCCCC-CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhC-----CCC
Confidence 344444555553 334788888877544 34665444 5677778888887667777999888665321 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..+. + + ....-.+++| ....|+-++++|.+.|..|++....
T Consensus 137 ~~~PcTp~av~~ll~~~~i-~--l-~Gk~vvViGr-s~iVG~Pla~lL~~~~atVtv~hs~------------------- 192 (285)
T PRK10792 137 LLRPCTPRGIMTLLERYGI-D--T-YGLNAVVVGA-SNIVGRPMSLELLLAGCTVTVCHRF------------------- 192 (285)
T ss_pred CCCCCCHHHHHHHHHHcCC-C--C-CCCEEEEECC-CcccHHHHHHHHHHCCCeEEEEECC-------------------
Confidence 1234455556666666542 1 1 1223334555 5668999999999999999887532
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. .+.++++++++
T Consensus 193 --------------------T~~l~~~~~~ADIvi~avG-----~p~~v~--~~~vk~gavVI 228 (285)
T PRK10792 193 --------------------TKNLRHHVRNADLLVVAVG-----KPGFIP--GEWIKPGAIVI 228 (285)
T ss_pred --------------------CCCHHHHHhhCCEEEEcCC-----Cccccc--HHHcCCCcEEE
Confidence 2456667889999999994 222332 25688999887
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.34 Score=46.66 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=58.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|.++++++.....+.. .|. . ..+++++++.+|+|+.
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G~--------------~-~~~leell~~ADIVI~ 315 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EGY--------------Q-VVTLEDVVETADIFVT 315 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cCc--------------e-eccHHHHHhcCCEEEE
Confidence 6899999999999999999999998875433322 111 1 2356778899999999
Q ss_pred ccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCcC
Q psy17416 202 SVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSFL 235 (290)
Q Consensus 202 avpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~ 235 (290)
++. .+.++ ++.-+.++++++++ |++...
T Consensus 316 atG-----t~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 316 ATG-----NKDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCC-----cccccCHHHHhccCCCcEEE-EcCCCc
Confidence 864 23444 35566789999886 444444
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.66 Score=42.70 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=57.4
Q ss_pred eeeEEecccchhHHHHHHHHH--HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFA--SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~--~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|.|++ |...+.-.+.+. ...-++.+|+++++..++...+.++.+. ..+....+.++
T Consensus 133 laiIGa---G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~------------------~~v~a~~s~~~ 191 (330)
T COG2423 133 LAIIGA---GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG------------------EAVGAADSAEE 191 (330)
T ss_pred EEEECC---cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC------------------ccceeccCHHH
Confidence 355664 444443333332 2234899999999998877765544321 12345688899
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++.+||+|+-|+|..- .+++ .+.+++++.|..
T Consensus 192 av~~aDiIvt~T~s~~----Pil~--~~~l~~G~hI~a 223 (330)
T COG2423 192 AVEGADIVVTATPSTE----PVLK--AEWLKPGTHINA 223 (330)
T ss_pred HhhcCCEEEEecCCCC----Ceec--HhhcCCCcEEEe
Confidence 9999999999999766 3332 345678887754
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.27 Score=43.77 Aligned_cols=112 Identities=10% Similarity=0.102 Sum_probs=76.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccC-CCCceeeeccCCCCC--CCCe
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST-HRSQFIVAHPVNPPY--FIPL 78 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~-~~~r~~g~hf~~P~~--~~~l 78 (290)
+|=.||++++|++|==.|.-- .--.+.+++-...++++|++ ||=++|...|...+. -..+=+|+--|+|+- -|+=
T Consensus 133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVPgt~G 210 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVPEMKG 210 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCCCCCC
Confidence 444569999999996665432 22567888888999999986 555777776655442 123446666666653 2442
Q ss_pred eeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 79 VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 79 vEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
--.+.-...+++.++...++++..||.+..+..+.-+
T Consensus 211 q~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvs 247 (342)
T PRK00961 211 QVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIG 247 (342)
T ss_pred ceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 2223345668999999999999999999988655433
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.6 Score=41.36 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=75.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCC-Ceee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-PLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~-~lvE 80 (290)
+|..+.+.++|+||=|++ ...=.+++.++....+++ ++.|-..+++++.+....+...+++.+-+..|...- ...=
T Consensus 49 ~~~~~~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~ 125 (260)
T PTZ00431 49 QSNEELAKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLV 125 (260)
T ss_pred CChHHHHHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEE
Confidence 355667889999999975 444567788887766654 568888999999999887654445555555555433 3344
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+..++++..+.+.+++..+|+ ++.+
T Consensus 126 i~~~~~~~~~~~~~v~~l~~~~G~-~~~v 153 (260)
T PTZ00431 126 FCANNNVDSTDKKKVIDIFSACGI-IQEI 153 (260)
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCc-EEEE
Confidence 556667788889999999999998 5556
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.57 Score=42.98 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=67.5
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH-HHhcccCCCCceeeeccC-----CCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTHRSQFIVAHPV-----NPPYF 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~-~l~~~~~~~~r~~g~hf~-----~P~~~ 75 (290)
+++ ++++++|+||.|++-. .+.++++++....++++++.+.+.++... .+...+.....+.|.+++ .|...
T Consensus 66 ~~~-~~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~ 142 (341)
T PRK08229 66 TDP-AALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAF 142 (341)
T ss_pred cCh-hhccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceE
Confidence 344 4688999999999754 45789999999999999998888887754 566666543334454542 22211
Q ss_pred C--CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 76 I--PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 76 ~--~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
. ..-++.-+. .+.++...+++...|...... .|..+
T Consensus 143 ~~~~~g~l~~~~---~~~~~~~~~~l~~~g~~~~~~-~di~~ 180 (341)
T PRK08229 143 HQGTSGALAIEA---SPALRPFAAAFARAGLPLVTH-EDMRA 180 (341)
T ss_pred EecCCCceEecC---CchHHHHHHHHHhcCCCceec-chhHH
Confidence 0 011122221 244677888888888766654 56443
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.82 Score=38.91 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHh-CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 84 AAWTSERVITRTREIMTEI-GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 84 ~~~t~~~~~~~~~~~~~~l-gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++.|.--++..+.+.++.+ +...+ ++-.-++++ +|.+|..++..+.+.|++|+++|++++.++...+
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l--~gk~v~I~G---~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSL--EGKTVAVQG---LGKVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCC--CCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4556677777777777775 32222 122223333 6899999999999999999999999876655443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.17 Score=45.94 Aligned_cols=106 Identities=25% Similarity=0.302 Sum_probs=67.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH-------HHhcccCCCCceeeeccCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-------VLSEHSTHRSQFIVAHPVNPPY 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~-------~l~~~~~~~~r~~g~hf~~P~~ 74 (290)
+|++++++++|+||-|++. ....+++.++.+.+.+++++.+.+++++.. .+.+......+. .-+..|..
T Consensus 63 ~~~~~~~~~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~ 138 (325)
T PRK00094 63 TDLAEALADADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSF 138 (325)
T ss_pred CCHHHHHhCCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccH
Confidence 4677788999999999998 467888899999999999887766555542 222222210011 11222332
Q ss_pred C-------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 75 F-------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 75 ~-------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
. ..++.+. ..+++.++.+..++...|..+... .|..|
T Consensus 139 ~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~-~d~~g 182 (325)
T PRK00094 139 AKEVARGLPTAVVIA---STDEELAERVQELFHSPYFRVYTN-TDVIG 182 (325)
T ss_pred HHHHHcCCCcEEEEE---eCCHHHHHHHHHHhCCCCEEEEec-CCcch
Confidence 1 1223322 236888999999999988766554 45544
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.19 Score=46.71 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=56.3
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..+...|. ++.++|++++.++.-...+.+... .. + . ..+..+.++++ +++||+|
T Consensus 45 aG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~------~~-~------~-~~i~~~~dy~~-~~daDiV 109 (350)
T PLN02602 45 VGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA------FL-P------R-TKILASTDYAV-TAGSDLC 109 (350)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh------cC-C------C-CEEEeCCCHHH-hCCCCEE
Confidence 68999999999888776 799999987654332222222110 00 0 0 23444457775 8999999
Q ss_pred EEcccc-------c-------hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE-------I-------LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe-------~-------~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.-. . ..+-+++.+++.+.++...+|.
T Consensus 110 VitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~iviv 152 (350)
T PLN02602 110 IVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLI 152 (350)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 987432 1 1234455667887766655443
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.1 Score=43.89 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=37.9
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
+.++.++|++++.++......++..++. | ..-++..++|..+++++||+||-++
T Consensus 28 ~~ei~L~Did~~RL~~~~~~~~~~~~~~---~----------~~~~v~~ttd~~eAl~gADfVi~~i 81 (183)
T PF02056_consen 28 GSEIVLMDIDEERLEIVERLARRMVEEA---G----------ADLKVEATTDRREALEGADFVINQI 81 (183)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHHHHHHC---T----------TSSEEEEESSHHHHHTTESEEEE--
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHhc---C----------CCeEEEEeCCHHHHhCCCCEEEEEe
Confidence 4589999999999987766666554421 1 1135667899999999999999654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.44 Score=42.62 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=50.3
Q ss_pred eeEEecccchhHHHHHHHHHH--cCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFAS--AGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~--~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ .|.||...+..+.. .++++. ++|++++..++..+. .|. ....+++++
T Consensus 10 GIIG---~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g~-------------~~~~~~~ee 63 (271)
T PRK13302 10 AIAG---LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LRR-------------PPPVVPLDQ 63 (271)
T ss_pred EEEC---ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cCC-------------CcccCCHHH
Confidence 5565 79999998888876 377775 789998765433220 110 123467787
Q ss_pred hcccCcEEEEccccchHHHHHHHHHH
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAI 217 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l 217 (290)
.+.++|+|++|.|.+. -.++..+.
T Consensus 64 ll~~~D~Vvi~tp~~~--h~e~~~~a 87 (271)
T PRK13302 64 LATHADIVVEAAPASV--LRAIVEPV 87 (271)
T ss_pred HhcCCCEEEECCCcHH--HHHHHHHH
Confidence 7889999999999665 34554443
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.3 Score=40.61 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=55.4
Q ss_pred cchhHHHHHHHHH-HcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA-SAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+++..+..+. ..+ -.|.+|+++++..++..+.++..+ +. .+....+++++++++|+|
T Consensus 135 aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~~------------~~~~~~~~~~~~~~aDiV 196 (325)
T PRK08618 135 TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------NT------------EIYVVNSADEAIEEADII 196 (325)
T ss_pred CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------CC------------cEEEeCCHHHHHhcCCEE
Confidence 5777776655543 334 479999999988766555443211 10 122346788889999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
+-|+|..- .++. ..+++|+.+.+-
T Consensus 197 i~aT~s~~----p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 197 VTVTNAKT----PVFS---EKLKKGVHINAV 220 (325)
T ss_pred EEccCCCC----cchH---HhcCCCcEEEec
Confidence 99999663 4443 467889877643
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.58 Score=38.94 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=53.3
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH---HHHHHHH--------HHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS---EQIENAK--------NTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~---e~l~~a~--------~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
+|.+|..++..+++.|. +++++|.+. ..+.+-. .+.+....++.+.. +..........+. ..++
T Consensus 7 ~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln---p~v~i~~~~~~~~-~~~~ 82 (174)
T cd01487 7 AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN---PFVKIEAINIKID-ENNL 82 (174)
T ss_pred cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC---CCCEEEEEEeecC-hhhH
Confidence 68899999999999998 599998875 2222111 00000000110000 0000000001111 1234
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhh
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIF 220 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~ 220 (290)
++.++++|+||+| .++.+.|+.+.....+.
T Consensus 83 ~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 83 EGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 5568899999999 77898888888877665
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.67 Score=41.26 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=53.0
Q ss_pred eeEEecccchhHHHHHHHHHHc--Cce-eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA--GYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~--G~~-V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ .|.||..++..+.+. +++ +.++|++++..++..+. .| ....+++++
T Consensus 5 gIIG---~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~--------------~~~~~~~~e 57 (265)
T PRK13304 5 GIVG---CGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG--------------AKACLSIDE 57 (265)
T ss_pred EEEC---ccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC--------------CeeECCHHH
Confidence 4555 689999998887765 455 45799998776543330 00 123467777
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEE
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 227 (290)
.+.++|+|++|.|.+. -.++..++.+ ...+.++
T Consensus 58 ll~~~DvVvi~a~~~~--~~~~~~~al~-~Gk~Vvv 90 (265)
T PRK13304 58 LVEDVDLVVECASVNA--VEEVVPKSLE-NGKDVII 90 (265)
T ss_pred HhcCCCEEEEcCChHH--HHHHHHHHHH-cCCCEEE
Confidence 7789999999998444 4455555443 2344444
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.87 Score=40.87 Aligned_cols=156 Identities=10% Similarity=0.135 Sum_probs=102.3
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....+|+..- .++++.|+++-.+ |-|+.--- +++.-.++......-..+=|+|++|...+..= .+
T Consensus 62 i~~~~~~l~~~~~~-~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g-----~~ 135 (278)
T PRK14172 62 IDFKKIKLDESISE-EDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG-----EK 135 (278)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCC-----CC
Confidence 34444456666533 3677777777544 45666544 57777788888876677779999987764421 11
Q ss_pred CCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
.--|.|-..+.++++.. ||..+ +++| ....|+-++++|.+.|..|++....
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vv---------ViGr-S~~VGkPla~lL~~~~AtVt~chs~-------------- 191 (278)
T PRK14172 136 CFLPCTPNSVITLIKSLNIDIEGKEVV---------VIGR-SNIVGKPVAQLLLNENATVTICHSK-------------- 191 (278)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEE---------EECC-CccchHHHHHHHHHCCCEEEEeCCC--------------
Confidence 11244445555555554 44444 3445 5778999999999999999877621
Q ss_pred HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 161 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 192 -------------------------T~~l~~~~~~ADIvIsAvG-----kp~~i~--~~~ik~gavVI 227 (278)
T PRK14172 192 -------------------------TKNLKEVCKKADILVVAIG-----RPKFID--EEYVKEGAIVI 227 (278)
T ss_pred -------------------------CCCHHHHHhhCCEEEEcCC-----CcCccC--HHHcCCCcEEE
Confidence 3456667889999999998 444443 34577999887
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.3 Score=39.89 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=104.0
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......||+.. +.++++.|+++-.+ |-|+.--- .++.-.++...+..-..+=|+|++|-..+.. ..+
T Consensus 61 i~~~~~~l~~~~~-~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----g~~ 134 (281)
T PRK14183 61 IYSITHEMPSTIS-QKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVT-----GLD 134 (281)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhc-----CCC
Confidence 3444556677764 44688888888554 35665444 5777778888887667777999888765321 112
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.+++++.+- ++ ....-.+++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~~VG~Pla~lL~~~~AtVti~hs~------------------- 190 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEI-DV---KGKDVCVVGA-SNIVGKPMAALLLNANATVDICHIF------------------- 190 (281)
T ss_pred CCCCCcHHHHHHHHHHcCC-CC---CCCEEEEECC-CCcchHHHHHHHHHCCCEEEEeCCC-------------------
Confidence 2235556666777776642 11 1122234445 4677899999999999888765321
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.++.||+||-|+. |..++. .+.+++|++++
T Consensus 191 --------------------T~~l~~~~~~ADIvV~AvG-----kp~~i~--~~~vk~gavvI 226 (281)
T PRK14183 191 --------------------TKDLKAHTKKADIVIVGVG-----KPNLIT--EDMVKEGAIVI 226 (281)
T ss_pred --------------------CcCHHHHHhhCCEEEEecC-----cccccC--HHHcCCCcEEE
Confidence 2345556889999999998 445544 34677999887
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.3 Score=39.94 Aligned_cols=162 Identities=10% Similarity=0.080 Sum_probs=104.6
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+......+|+.. ..++.+.|+++-.+ |-|+.--- .++.-.++.+.+..-..+=|+|++|-..+..- .
T Consensus 59 Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~-----~ 132 (282)
T PRK14169 59 GVRSLMFRLPEATT-QADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWAN-----E 132 (282)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcC-----C
Confidence 34555666777744 33677888877543 45666555 57777788888876677779999887654321 1
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-..+.++++..|- ++ ..-.-.+++| ....|+-++++|.+.|..|++...
T Consensus 133 ~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~atVtichs------------------- 188 (282)
T PRK14169 133 PTVVASTPYGIMALLDAYDI-DV---AGKRVVIVGR-SNIVGRPLAGLMVNHDATVTIAHS------------------- 188 (282)
T ss_pred CCCCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHHHCCCEEEEECC-------------------
Confidence 11234555555666665542 11 1112234455 577899999999999998886631
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 189 --------------------~T~~l~~~~~~ADIvI~AvG-----~p~~i~--~~~vk~GavVI 225 (282)
T PRK14169 189 --------------------KTRNLKQLTKEADILVVAVG-----VPHFIG--ADAVKPGAVVI 225 (282)
T ss_pred --------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCcEEE
Confidence 13456667889999999998 444544 34678999887
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.52 Score=42.45 Aligned_cols=140 Identities=13% Similarity=0.136 Sum_probs=90.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH--HHhcccCCCCceeeeccCCCCC---
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPPY--- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~--~l~~~~~~~~r~~g~hf~~P~~--- 74 (290)
++..|+.++||+||=+++.+-+++.=+| ..+-+.+++++++...|+.=|.. ++++.... .|.+|.-=|-
T Consensus 49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg 124 (286)
T COG2084 49 ASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA----KGLEFLDAPVSGG 124 (286)
T ss_pred CCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCcEEecCccCC
Confidence 4567899999999999999999988888 45666677888777554333332 66666642 3556654221
Q ss_pred ----CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc-eee---EEecc-cchhHHHHH--HHHH-HcCceeEE
Q psy17416 75 ----FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI-RGF---ALNRI-HGLIGQAWA--MIFA-SAGYKVSL 142 (290)
Q Consensus 75 ----~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~-~gf---~~nri-~G~~g~~ia--~~~~-~~G~~V~l 142 (290)
..-..-|+.| -+++.++++..++..+|+..+.+ ++. .|. +.|.+ .+.....++ +.++ +.|
T Consensus 125 ~~~A~~GtLtimvG--G~~~~f~r~~pvl~~~g~~i~~~-G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G----- 196 (286)
T COG2084 125 VPGAAAGTLTIMVG--GDAEAFERAKPVLEAMGKNIVHV-GPVGAGQAAKLANNILLAGNIAALAEALALAEKAG----- 196 (286)
T ss_pred chhhhhCceEEEeC--CCHHHHHHHHHHHHHhcCceEEE-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 1223334444 58999999999999999999998 565 222 34443 232222222 2333 445
Q ss_pred ecCCHHHHHHHHH
Q psy17416 143 YDVLSEQIENAKN 155 (290)
Q Consensus 143 ~d~~~e~l~~a~~ 155 (290)
.+++.+.+++.
T Consensus 197 --ld~~~~~~vi~ 207 (286)
T COG2084 197 --LDPDVVLEVIS 207 (286)
T ss_pred --CCHHHHHHHHh
Confidence 77887777665
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=1 Score=40.45 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=100.6
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....+|+..- .++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|+.|-..+..=.+ +
T Consensus 60 i~~~~~~l~~~~t~-~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~----~ 134 (282)
T PRK14166 60 IKSLVYHLNENTTQ-NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLE----S 134 (282)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCC----C
Confidence 34444455666433 3688888877544 35666544 5777778888887667777999888765321101 1
Q ss_pred CCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
.--|.|-..+.++++.. ||..++ ++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvV---------vGr-S~iVGkPla~lL~~~~atVt~chs~-------------- 190 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVI---------IGA-SNIVGRPMATMLLNAGATVSVCHIK-------------- 190 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CCcchHHHHHHHHHCCCEEEEeCCC--------------
Confidence 11233444455555554 454443 444 5677899999999989888865521
Q ss_pred HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 161 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. ...+++|++++
T Consensus 191 -------------------------T~nl~~~~~~ADIvIsAvG-----kp~~i~--~~~vk~GavVI 226 (282)
T PRK14166 191 -------------------------TKDLSLYTRQADLIIVAAG-----CVNLLR--SDMVKEGVIVV 226 (282)
T ss_pred -------------------------CCCHHHHHhhCCEEEEcCC-----CcCccC--HHHcCCCCEEE
Confidence 3456667889999999998 444544 34678999887
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.5 Score=39.37 Aligned_cols=160 Identities=12% Similarity=0.095 Sum_probs=101.0
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC--
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA-- 84 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~-- 84 (290)
+.-....+|+.. +.++++.|+++-.++ -|+.--- ..+.-.++.....--..+=|+|+.|...++. +
T Consensus 62 ~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~------g~~ 134 (282)
T PRK14180 62 DSQVITLPEHTT-ESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQL------RDK 134 (282)
T ss_pred EEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhc------CCC
Confidence 333444566643 346777777775443 4666544 5677778888887666777999999876431 2
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
..--|.|-.++.++++..|- ++ ..-.-.+++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~~PcTp~aii~lL~~y~i-~l---~Gk~vvViGr-S~~VGkPla~lL~~~~ATVt~chs~------------------ 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGI-KT---EGAYAVVVGA-SNVVGKPVSQLLLNAKATVTTCHRF------------------ 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CCcchHHHHHHHHHCCCEEEEEcCC------------------
Confidence 11123444555555555432 11 1112234445 5778999999999999998876521
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
|.|+.+.++.||+||-|+. |..++. ...++++++++-
T Consensus 192 ---------------------T~dl~~~~k~ADIvIsAvG-----kp~~i~--~~~vk~gavVID 228 (282)
T PRK14180 192 ---------------------TTDLKSHTTKADILIVAVG-----KPNFIT--ADMVKEGAVVID 228 (282)
T ss_pred ---------------------CCCHHHHhhhcCEEEEccC-----CcCcCC--HHHcCCCcEEEE
Confidence 3455556789999999998 555554 256789998873
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.56 Score=44.46 Aligned_cols=106 Identities=18% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCcHHhhcccCcEEEEcccCChH--------HHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhc-ccCC--CCc-ee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSE-HSTH--RSQ-FI 65 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~--------~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~-~~~~--~~r-~~ 65 (290)
++|+++++++||+||-|+|-... .-.+..+.+.+.+++++++. ++|+++++ +++. ...+ .-+ ..
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi-~~STv~pgt~~~l~~~~~~~~~g~~~~~ 145 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVV-LESTVPPGTTEEVVKPILERASGLKLGE 145 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEE-EeCcCCCCchHHHHHHHHHhhcCCCCCC
Confidence 35778889999999999997743 34556677888888888776 45676655 4432 2111 000 11
Q ss_pred eec-cCCCCCCCCee---------eEeeCCCCCHHHHHHHHHHHHHhC-CccEEE
Q psy17416 66 VAH-PVNPPYFIPLV---------EIVPAAWTSERVITRTREIMTEIG-MKPVTL 109 (290)
Q Consensus 66 g~h-f~~P~~~~~lv---------Eiv~~~~t~~~~~~~~~~~~~~lg-k~~v~v 109 (290)
..+ -++|....+-- -++.| .+++..+.+..++..++ +.++.+
T Consensus 146 d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~ 198 (411)
T TIGR03026 146 DFYLAYNPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLV 198 (411)
T ss_pred CceEEECCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEc
Confidence 111 22444333211 35666 58999999999999998 566665
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.17 Score=46.20 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-C-C-chHhhcccCc
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-T-P-VLRECLEDAI 197 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~-~-~l~~~l~~aD 197 (290)
|..|..+|..+...|+ ++.++|+++ ..-.++. +. +.. ...++.. + + ++.+++++||
T Consensus 9 G~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L~------------~~~-----~~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 9 GGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-LS------------HIP-----TAASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-hh------------cCC-----cCceEEEecCCCchHHHcCCCC
Confidence 8899999999888776 799999987 2111111 00 000 1123332 1 2 3345799999
Q ss_pred EEEEccc--------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 198 FIQESVP--------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 198 lVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||.+.- .|..+-+++.+++.++. +++++.
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iii 113 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMIL 113 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEE
Confidence 9996643 23445566666788775 455444
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.66 Score=39.00 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQ 166 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~ 166 (290)
|.-..++.+.+.++++|.. . ++..-.++- -.|.+|+.++..++..|++|.+++++++.++...+.+....
T Consensus 7 ta~aav~~~~~~l~~~~~~---l-~~~~vlVlG-gtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~----- 76 (194)
T cd01078 7 TAAAAVAAAGKALELMGKD---L-KGKTAVVLG-GTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF----- 76 (194)
T ss_pred HHHHHHHHHHHHHHHhCcC---C-CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc-----
Confidence 3455667777777766531 2 222222221 13788999999999999999999999877665544332110
Q ss_pred cCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccch
Q psy17416 167 KGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL 207 (290)
Q Consensus 167 ~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~ 207 (290)
+.. .. . ....-..++.++++++|+||-|.|...
T Consensus 77 -~~~---~~---~-~~~~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 77 -GEG---VG---A-VETSDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred -CCc---EE---E-eeCCCHHHHHHHHhcCCEEEECCCCCc
Confidence 000 00 0 000011234457889999999998665
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.86 E-value=2.8 Score=41.01 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|...+..+...|..|.++|.+++.++.+.+
T Consensus 172 aG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 172 AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999999888899999999999998766554
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.80 E-value=1 Score=40.52 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=65.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF 75 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~ 75 (290)
+++++++++++|+||=|+|-+-.++.=++ ..+-...+++.++. ++|++++. ++++.+.. -|.+|..-| .
T Consensus 43 ~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vi-d~st~~p~~~~~~~~~~~~----~g~~~vdaP-v 116 (288)
T TIGR01692 43 AASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLI-DCSTIDPDSARKLAELAAA----HGAVFMDAP-V 116 (288)
T ss_pred cCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEECC-C
Confidence 35788899999999999998776653332 56666667777665 44466665 44444421 255554421 1
Q ss_pred C---------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 76 I---------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 76 ~---------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+ .+. ++.| .+++.++.+..++..+|+..+.+
T Consensus 117 ~Gg~~~a~~g~l~-~~~g--g~~~~~~~~~~~l~~~g~~~~~~ 156 (288)
T TIGR01692 117 SGGVGGARAGTLT-FMVG--GVAEEFAAAEPVLGPMGRNIVHC 156 (288)
T ss_pred CCCHHHHhhCcEE-EEEC--CCHHHHHHHHHHHHHhcCCeEee
Confidence 1 222 2233 35788999999999999988887
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.53 Score=42.93 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=54.2
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..+...|. ++.++|.+++..+.-...+.+.. ..... ..-.+. +.+++ .+++||+|
T Consensus 7 aG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~------~~~~~------~~~~i~-~~~y~-~~~~aDiv 72 (307)
T cd05290 7 AGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT------ALTYS------TNTKIR-AGDYD-DCADADII 72 (307)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh------ccCCC------CCEEEE-ECCHH-HhCCCCEE
Confidence 58899999999888876 79999998765432222222110 00000 001233 35666 58999999
Q ss_pred EEcccc----------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE----------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe----------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.-. |..+-+++..++.+..+.+.+|.
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv 117 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL 117 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 987542 12244555566777775554443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.14 Score=47.86 Aligned_cols=142 Identities=17% Similarity=0.060 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHH
Q psy17416 22 LQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTE 101 (290)
Q Consensus 22 ~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~ 101 (290)
++.|-+++-+|+.+|..- ++.+.+++.++.. +.-||-||.||..- .|...=|-=..+....++.
T Consensus 213 LAtKIsFiNEia~ice~~--------g~D~~~V~~gIGl-D~RIG~~fl~aG~G-------yGGsCfPKD~~AL~~~a~~ 276 (414)
T COG1004 213 LATKISFINEIANICEKV--------GADVKQVAEGIGL-DPRIGNHFLNAGFG-------YGGSCFPKDTKALIANAEE 276 (414)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCHHHHHHHcCC-CchhhHhhCCCCCC-------CCCcCCcHhHHHHHHHHHh
Confidence 445666666666666432 5677888887763 44589999999751 1222223333333344444
Q ss_pred hCCccEE------EeccceeeEEecc-------------cc------------hhHHHHHHHHHHcCceeEEecCCHHHH
Q psy17416 102 IGMKPVT------LTTEIRGFALNRI-------------HG------------LIGQAWAMIFASAGYKVSLYDVLSEQI 150 (290)
Q Consensus 102 lgk~~v~------v~~d~~gf~~nri-------------~G------------~~g~~ia~~~~~~G~~V~l~d~~~e~l 150 (290)
+|-.+-. ++...+.+++..+ +| .=...++..+.+.|.+|..||....
T Consensus 277 ~~~~~~ll~avv~vN~~qk~~~~~~i~~~~~l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~-- 354 (414)
T COG1004 277 LGYDPNLLEAVVEVNERRKDKLAEKILNHLGLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM-- 354 (414)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh--
Confidence 4422211 1111111111110 11 1122455667778889999885432
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 151 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 151 ~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
+.+.. ....+.+.+++++++++||.++.+..
T Consensus 355 ~~~~~-----------------------~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 355 ENAFR-----------------------NFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred HHHHh-----------------------cCCCceEeCCHHHHHhhCCEEEEecc
Confidence 22222 00134667899999999999998765
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=2 Score=36.89 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=55.8
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH---HHHHHH--------HHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS---EQIENA--------KNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~---e~l~~a--------~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
+|.+|..++..+++.|. +++++|.+. ..+.+- ..+.+....++.+.. ...........+. ..+.
T Consensus 36 ~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln---p~v~v~~~~~~i~-~~~~ 111 (212)
T PRK08644 36 AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN---PFVEIEAHNEKID-EDNI 111 (212)
T ss_pred cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC---CCCEEEEEeeecC-HHHH
Confidence 68999999999999997 588998872 222110 011111111111100 0000000011111 1234
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++.++++|+||+| .++.+.|..+........+...|.++
T Consensus 112 ~~~~~~~DvVI~a-~D~~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 112 EELFKDCDIVVEA-FDNAETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHcCCCEEEEC-CCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 4567899999999 57888888777766665444445443
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.28 Score=40.43 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=56.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+.+.|++|+.+.++++.++. .. ...... ..+.-..++.++++++|.||.
T Consensus 7 tG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~----------~~~~~~---------~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 7 TGFVGRALAKQLLRRGHEVTALVRSPSKAED-SP----------GVEIIQ---------GDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CT----------TEEEEE---------SCTTCHHHHHHHHTTSSEEEE
T ss_pred CChHHHHHHHHHHHCCCEEEEEecCchhccc-cc----------ccccce---------eeehhhhhhhhhhhhcchhhh
Confidence 3788999999999999999999999986654 00 000001 111112456678899999999
Q ss_pred cccc---chHHHHHHHHHHhhhCCCCcEEEeCCC
Q psy17416 202 SVPE---ILQIKHQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 202 avpe---~~~~k~~~~~~l~~~~~~~~ii~s~ts 232 (290)
+++. +.+.-+.+++.+...=.+..++.|+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 67 AAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp CCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhcccccccccccccccccccccceeeeccc
Confidence 9983 333444555555543223334445443
|
... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=1 Score=35.83 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=59.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.| .|.++|..+.+.|++|+..|.+++.++.+.+. +. . ...+.+ +..+++ .-+++|+|-+
T Consensus 25 ~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~--~-----~v~dDl-f~p~~~-~y~~a~liys 83 (134)
T PRK04148 25 IG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL--N-----AFVDDL-FNPNLE-IYKNAKLIYS 83 (134)
T ss_pred ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC--e-----EEECcC-CCCCHH-HHhcCCEEEE
Confidence 46 67778888999999999999999987776552 11 0 011111 133443 4578999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
.-| ....+.-+.+|.+....+.+|..-
T Consensus 84 irp--p~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 84 IRP--PRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred eCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 887 333567777899999999888643
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=3.6 Score=37.16 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=103.9
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+.-....+|+.. +.++++.|+++-.+ |-|+.--- .++.-.++.....--..+=|+|.+|=..+.. ..
T Consensus 61 Gi~~~~~~l~~~~~-~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~ 134 (286)
T PRK14175 61 GMISEIVHLEETAT-EEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYI-----DE 134 (286)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhc-----CC
Confidence 34555556677753 45788888887544 24555433 4677778888887666777999887554321 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-..+.++++..+. .+ ....-.+++| .+.+|+-++.++.+.|..|++.....
T Consensus 135 ~~~~PcTp~ai~~ll~~~~i---~l-~Gk~vvVIGr-s~~VG~pla~lL~~~gatVtv~~s~t----------------- 192 (286)
T PRK14175 135 QTFVPCTPLGIMEILKHADI---DL-EGKNAVVIGR-SHIVGQPVSKLLLQKNASVTILHSRS----------------- 192 (286)
T ss_pred CCCCCCcHHHHHHHHHHcCC---CC-CCCEEEEECC-CchhHHHHHHHHHHCCCeEEEEeCCc-----------------
Confidence 12235555666666666542 12 2223344444 45689999999999999999887432
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
.++.+.+++||+||-|++-. .++.. +.++++++++-
T Consensus 193 ----------------------~~l~~~~~~ADIVIsAvg~p-----~~i~~--~~vk~gavVID 228 (286)
T PRK14175 193 ----------------------KDMASYLKDADVIVSAVGKP-----GLVTK--DVVKEGAVIID 228 (286)
T ss_pred ----------------------hhHHHHHhhCCEEEECCCCC-----cccCH--HHcCCCcEEEE
Confidence 23445678999999999843 33332 35688888873
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.5 Score=38.10 Aligned_cols=157 Identities=12% Similarity=0.150 Sum_probs=103.8
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....+|+.. ..++++.|+++-.++ -|+.--- .++.-.++...+..-..+=|+|++|-..+.. ..+
T Consensus 61 i~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~-----~~~ 134 (284)
T PRK14170 61 MKSVLIELPENVT-EEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-----GKD 134 (284)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhC-----CCC
Confidence 4455556677754 457888888875543 3665444 5777778888887667777999988766432 111
Q ss_pred CCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
.--|.|-..+.++++.. ||..++ ++| ....|+-++++|.+.|..|++...
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvV---------vGr-S~iVGkPla~lL~~~~atVtichs--------------- 189 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEGKRAVV---------IGR-SNIVGKPVAQLLLNENATVTIAHS--------------- 189 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CCcchHHHHHHHHHCCCEEEEeCC---------------
Confidence 12244445555555554 454444 444 567789999999999999987642
Q ss_pred HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 161 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
-|.++.+.+++||+||-|+. |..++. .+.+++|++++-
T Consensus 190 ------------------------~T~~l~~~~~~ADIvI~AvG-----~~~~i~--~~~vk~GavVID 227 (284)
T PRK14170 190 ------------------------RTKDLPQVAKEADILVVATG-----LAKFVK--KDYIKPGAIVID 227 (284)
T ss_pred ------------------------CCCCHHHHHhhCCEEEEecC-----CcCccC--HHHcCCCCEEEE
Confidence 13456667899999999998 444443 345779998873
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=2 Score=38.85 Aligned_cols=160 Identities=10% Similarity=0.073 Sum_probs=103.1
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-.-..+|+..- .++++.|+++-.+ |-|+.--- .++.-.++.+....-..+=|+|++|-..++. +.
T Consensus 62 i~~~~~~l~~~~~e-~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~------g~ 134 (294)
T PRK14187 62 LRSETILLPSTISE-SSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFT------GQ 134 (294)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhC------CC
Confidence 34444456666533 3677888887554 34666554 5777788888888667788999988765431 21
Q ss_pred ---CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHH
Q psy17416 86 ---WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQ 162 (290)
Q Consensus 86 ---~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~ 162 (290)
.--|.|-..+.++++..|- ++ ....-.+++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~aTVt~chs~---------------- 193 (294)
T PRK14187 135 KKNCLIPCTPKGCLYLIKTITR-NL---SGSDAVVIGR-SNIVGKPMACLLLGENCTVTTVHSA---------------- 193 (294)
T ss_pred CCCCccCcCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHhhCCCEEEEeCCC----------------
Confidence 1124455555666665542 11 1112234555 5778999999999999999876631
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. ...++++++++
T Consensus 194 -----------------------T~~l~~~~~~ADIvVsAvG-----kp~~i~--~~~ik~gaiVI 229 (294)
T PRK14187 194 -----------------------TRDLADYCSKADILVAAVG-----IPNFVK--YSWIKKGAIVI 229 (294)
T ss_pred -----------------------CCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEE
Confidence 3456667889999999998 444443 34567899887
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=2 Score=38.81 Aligned_cols=157 Identities=10% Similarity=0.112 Sum_probs=103.3
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......+|+..- .++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|+.|-..+..=- .+
T Consensus 62 i~~~~~~l~~~~~~-~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~----~~ 136 (288)
T PRK14171 62 IDTLLVNLSTTIHT-NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGI----SQ 136 (288)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCC----CC
Confidence 44445556666543 4688888887544 35666544 577788888888766777799999876643110 01
Q ss_pred CCCHHHHHHHHHHHHHhC-----CccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIG-----MKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lg-----k~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
.--|.|-..+.++++..+ |..+ +++| ....|+-++++|.+.|..|++....
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vv---------ViGr-S~iVGkPla~lL~~~~ATVtichs~-------------- 192 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVV---------IIGR-SNIVGKPLSALLLKENCSVTICHSK-------------- 192 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEE---------EECC-CCcchHHHHHHHHHCCCEEEEeCCC--------------
Confidence 123445555666666654 4433 4445 5678999999999999998876521
Q ss_pred HHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 161 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+.-. .++. ...+++|++++
T Consensus 193 -------------------------T~~L~~~~~~ADIvV~AvGkp-----~~i~--~~~vk~GavVI 228 (288)
T PRK14171 193 -------------------------THNLSSITSKADIVVAAIGSP-----LKLT--AEYFNPESIVI 228 (288)
T ss_pred -------------------------CCCHHHHHhhCCEEEEccCCC-----CccC--HHHcCCCCEEE
Confidence 345666788999999999833 3333 34577999887
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.4 Score=38.20 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=104.3
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+......+|+.. ..++.+.|+++-.+ |-|+.--- .++.-.++.+....-..+=|+|+.|-..+.. ..
T Consensus 58 Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~ 131 (287)
T PRK14173 58 GLRSQVEVLPESTS-QEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWM-----GG 131 (287)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhc-----CC
Confidence 34555666777752 34677777776443 45666544 5777778888887667777999888765331 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-..+.++++..|- ++ ..-.-.+++| ....|+-++++|.+.|..|++...
T Consensus 132 ~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~aTVtichs------------------- 187 (287)
T PRK14173 132 EALEPCTPAGVVRLLKHYGI-PL---AGKEVVVVGR-SNIVGKPLAALLLREDATVTLAHS------------------- 187 (287)
T ss_pred CCCCCCCHHHHHHHHHHcCC-CC---CCCEEEEECC-CCccHHHHHHHHHHCCCEEEEeCC-------------------
Confidence 11234455555666666542 11 1112234445 577899999999999999886641
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 188 --------------------~T~~l~~~~~~ADIvIsAvG-----kp~~i~--~~~vk~GavVI 224 (287)
T PRK14173 188 --------------------KTQDLPAVTRRADVLVVAVG-----RPHLIT--PEMVRPGAVVV 224 (287)
T ss_pred --------------------CCCCHHHHHhhCCEEEEecC-----CcCccC--HHHcCCCCEEE
Confidence 13466667899999999998 444543 45678999887
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.6 Score=38.18 Aligned_cols=162 Identities=11% Similarity=0.096 Sum_probs=101.4
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+..+...+|+. .+.++.+.|+++-.+ |-|+.--- +++.-.++......-..+=|+|++|-..++.= ..
T Consensus 62 i~~~~~~l~~~~-~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~-----~~ 135 (297)
T PRK14186 62 IASFGKHLPADT-SQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKG-----EP 135 (297)
T ss_pred CEEEEEECCCCC-CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC-----CC
Confidence 444445566664 455777777777443 35665544 57777788888876677779998886543210 01
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-.++.++++..|- + + ....-.+++| ....|+-++++|.+.|..|+....
T Consensus 136 ~~~PcTp~aii~lL~~~~i-~--l-~Gk~vvVIGr-S~iVGkPla~lL~~~~atVtv~hs-------------------- 190 (297)
T PRK14186 136 GLRSCTPAGVMRLLRSQQI-D--I-AGKKAVVVGR-SILVGKPLALMLLAANATVTIAHS-------------------- 190 (297)
T ss_pred CCCCCCHHHHHHHHHHhCC-C--C-CCCEEEEECC-CccchHHHHHHHHHCCCEEEEeCC--------------------
Confidence 1123445555555655542 1 1 1112234455 577899999999999999877631
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
-|.++.+.+++||+||-|+. |..++. ...+++|++++-
T Consensus 191 -------------------~T~~l~~~~~~ADIvIsAvG-----kp~~i~--~~~ik~gavVID 228 (297)
T PRK14186 191 -------------------RTQDLASITREADILVAAAG-----RPNLIG--AEMVKPGAVVVD 228 (297)
T ss_pred -------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEEE
Confidence 13456667889999999998 444443 346789998873
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.6 Score=41.87 Aligned_cols=92 Identities=15% Similarity=0.052 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CC---chHhhccc
Q psy17416 122 HGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TP---VLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~---~l~~~l~~ 195 (290)
.|++--....+.... |..|..+|+++++.+.+.+-+....+- -.++++ +. +....+++
T Consensus 129 SGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----------------~~~m~f~~~d~~~~~~dl~~ 192 (276)
T PF03059_consen 129 SGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----------------SKRMSFITADVLDVTYDLKE 192 (276)
T ss_dssp --SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----------------SSEEEEES-GGGG-GG---
T ss_pred CCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----------------cCCeEEEecchhcccccccc
Confidence 465544433333333 467889999999998887755522210 011222 11 22223678
Q ss_pred CcEEEEcccc--chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 196 AIFIQESVPE--ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 196 aDlVieavpe--~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
.|+|+.|.-- +.+-|.+++..|.+.+++|+++..
T Consensus 193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9999988652 233699999999999999998873
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.7 Score=41.02 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHcCc-------eeEEe--cCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC-CchHhh
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLY--DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT-PVLREC 192 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~--d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~l~~~ 192 (290)
|..|..+|..+...|. .+.++ |.+.+.++.-.-.+.+... ..+.+++++ .+++ +
T Consensus 54 G~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~---------------~~~~~v~i~~~~y~-~ 117 (387)
T TIGR01757 54 GMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY---------------PLLREVSIGIDPYE-V 117 (387)
T ss_pred cHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh---------------hhcCceEEecCCHH-H
Confidence 8899999999887764 24455 7777655432222222110 111233433 4444 6
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++|||+||.+.-- |..+-+++..+|.++.++++++.
T Consensus 118 ~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~ivi 167 (387)
T TIGR01757 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVL 167 (387)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 8999999975432 23345566667888776777655
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.99 Score=41.16 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.||..++..+...| ..|.+++++++......+. .|. .....+++.+.+.++|+||
T Consensus 186 aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~------------~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 186 AGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG------------NAVPLDELLELLNEADVVI 243 (311)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC------------eEEeHHHHHHHHhcCCEEE
Confidence 5889998888887755 6899999999766543331 111 0001134566788999999
Q ss_pred EccccchH
Q psy17416 201 ESVPEILQ 208 (290)
Q Consensus 201 eavpe~~~ 208 (290)
.|++..-.
T Consensus 244 ~at~~~~~ 251 (311)
T cd05213 244 SATGAPHY 251 (311)
T ss_pred ECCCCCch
Confidence 99997664
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.9 Score=36.48 Aligned_cols=90 Identities=16% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcC
Q psy17416 89 ERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKG 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g 168 (290)
+.+.+.+.+++++.|. ++ +...-.++|| ....|..++.++.+.|..|...+.+
T Consensus 9 p~t~~a~~~ll~~~~~-~~---~gk~v~VvGr-s~~vG~pla~lL~~~gatV~~~~~~---------------------- 61 (140)
T cd05212 9 SPVAKAVKELLNKEGV-RL---DGKKVLVVGR-SGIVGAPLQCLLQRDGATVYSCDWK---------------------- 61 (140)
T ss_pred ccHHHHHHHHHHHcCC-CC---CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEeCCC----------------------
Confidence 4455666666666553 22 1223345555 4566777777777777777766632
Q ss_pred CCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 169 CLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 169 ~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++++.+++||+||-|+....-++.+ .+++|+++..
T Consensus 62 -----------------t~~l~~~v~~ADIVvsAtg~~~~i~~~-------~ikpGa~Vid 98 (140)
T cd05212 62 -----------------TIQLQSKVHDADVVVVGSPKPEKVPTE-------WIKPGATVIN 98 (140)
T ss_pred -----------------CcCHHHHHhhCCEEEEecCCCCccCHH-------HcCCCCEEEE
Confidence 225566789999999999866434333 4779998874
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.3 Score=39.66 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=73.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHH---hcccCCCCceeeeccCCCCC--CC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL---SEHSTHRSQFIVAHPVNPPY--FI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l---~~~~~~~~r~~g~hf~~P~~--~~ 76 (290)
+|=.||++++|++|==.|.-- ..-.+.+++-...++++|++ ||=++|...| .+.++| +=+|+--|+|+- -|
T Consensus 131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R--~DvgVsS~HPaaVPgt 206 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGR--EDLNVTSYHPGCVPEM 206 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCc--ccCCeeccCCCCCCCC
Confidence 444569999999997665432 22567888888999999986 5556676644 444443 445655555542 23
Q ss_pred C-eeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 77 P-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 77 ~-lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
+ =+-|+ ....+++.++...++++..||.+..+..+.
T Consensus 207 ~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~PA~L 243 (340)
T TIGR01723 207 KGQVYIA-EGYASEEAVNKLYELGKKARGKAFKMPANL 243 (340)
T ss_pred CCceEee-cccCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 2 23333 457789999999999999999999886553
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=6.5 Score=38.50 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|.+|...++.+...|..|..+|++++.++.+.+
T Consensus 173 aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 173 AGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999888888889999999999999887766
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=2.3 Score=38.37 Aligned_cols=162 Identities=12% Similarity=0.109 Sum_probs=100.3
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+......||+.. ..++++.|+++-.+ |-|+.--- .++.-..+.....--..+=|+|++|-..+.. ..
T Consensus 60 Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----g~ 133 (285)
T PRK14191 60 GMDSDLHTLQENTT-EAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCS-----QL 133 (285)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhc-----CC
Confidence 34455556677643 34777888887544 35666544 5777778888887666777999888665321 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-..+.++++..+- ++ ..-.-.+++| ....|+-+|.++.+.|..|++....
T Consensus 134 ~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvVvGr-s~~VG~Pla~lL~~~gAtVtv~hs~------------------ 190 (285)
T PRK14191 134 DGFVPATPMGVMRLLKHYHI-EI---KGKDVVIIGA-SNIVGKPLAMLMLNAGASVSVCHIL------------------ 190 (285)
T ss_pred CCCCCCcHHHHHHHHHHhCC-CC---CCCEEEEECC-CchhHHHHHHHHHHCCCEEEEEeCC------------------
Confidence 11224555555666665432 11 1112223444 4577999999999999999887421
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++.+.+++||+||-|+.-. .++. .+.++++++++
T Consensus 191 ---------------------t~~l~~~~~~ADIvV~AvG~p-----~~i~--~~~vk~GavVI 226 (285)
T PRK14191 191 ---------------------TKDLSFYTQNADIVCVGVGKP-----DLIK--ASMVKKGAVVV 226 (285)
T ss_pred ---------------------cHHHHHHHHhCCEEEEecCCC-----CcCC--HHHcCCCcEEE
Confidence 223445678999999999733 3333 23568999887
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.48 E-value=4.3 Score=36.78 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEE-----ecCCHHHHHHHHHHHHHHHHHH
Q psy17416 90 RVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSL-----YDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 90 ~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l-----~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.++....+-+..|+ .++-.-.|++.- ..++.++....+..|.+|.+ |..+++-++.|.+..+..
T Consensus 136 Q~LADl~Ti~E~~g~----l~g~k~a~vGDg--NNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~---- 205 (310)
T COG0078 136 QALADLMTIKEHFGS----LKGLKLAYVGDG--NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKES---- 205 (310)
T ss_pred HHHHHHHHHHHhcCc----ccCcEEEEEcCc--chHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhc----
Confidence 677777777777775 222333455442 56777887788888999977 455666666655522221
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCC
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMS 222 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~ 222 (290)
+ +.+++++|+.+++++||+|.-=+.-+.....+..++.....+
T Consensus 206 -------g--------~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 206 -------G--------GKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred -------C--------CeEEEecCHHHHhCCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 1 367789999999999999997666655544444444444333
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.3 Score=40.22 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHH-cC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~-~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+++..+..+.. .+ -+|.+|+++++..++..++++. . + . .+. ..+.++++.++|+|
T Consensus 133 aG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~----~-~-------~~~-~~~~~~av~~aDiV 192 (304)
T PRK07340 133 TGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------L----G-P-------TAE-PLDGEAIPEAVDLV 192 (304)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------c----C-C-------eeE-ECCHHHHhhcCCEE
Confidence 57788877777653 45 4799999999887765554321 0 0 0 111 36778889999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
|-|+|..- .++.. .+++++.|..
T Consensus 193 itaT~s~~----Pl~~~---~~~~g~hi~~ 215 (304)
T PRK07340 193 VTATTSRT----PVYPE---AARAGRLVVA 215 (304)
T ss_pred EEccCCCC----ceeCc---cCCCCCEEEe
Confidence 99999765 44543 3689987764
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.36 Score=38.31 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=46.4
Q ss_pred cchhHHHHHHHHHHcCce-eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~-V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-+++.++..+...|.. |.+++|+.+..++..+.+.. .. -.+...+++.+.+.++|+||
T Consensus 20 aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~------------~~-------~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 20 AGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG------------VN-------IEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG------------CS-------EEEEEGGGHCHHHHTESEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc------------cc-------cceeeHHHHHHHHhhCCeEE
Confidence 688999999999999986 99999999877655542200 00 00111345556788999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|+|...
T Consensus 81 ~aT~~~~ 87 (135)
T PF01488_consen 81 NATPSGM 87 (135)
T ss_dssp E-SSTTS
T ss_pred EecCCCC
Confidence 9999664
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.8 Score=41.56 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHc-------Cc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHhh
Q psy17416 123 GLIGQAWAMIFASA-------GY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLREC 192 (290)
Q Consensus 123 G~~g~~ia~~~~~~-------G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~~ 192 (290)
|.+|..+|..++.. |. ++.++|++++.++.-.-.+++... ....++.+ +.+++ +
T Consensus 110 G~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~---------------~~~~~v~i~~~~ye-~ 173 (444)
T PLN00112 110 GMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY---------------PLLREVSIGIDPYE-V 173 (444)
T ss_pred cHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh---------------hhcCceEEecCCHH-H
Confidence 88999999998877 65 788999988876543333332211 01123443 34555 6
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++|||+||.+.-- |..+-+++.++|.++..++++++
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivI 223 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVI 223 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 8999999976532 23345556667777555666554
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.53 Score=43.01 Aligned_cols=87 Identities=24% Similarity=0.192 Sum_probs=48.9
Q ss_pred chhHHHHHHHHHH---cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc--CCchHhhcccCc
Q psy17416 123 GLIGQAWAMIFAS---AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG--TPVLRECLEDAI 197 (290)
Q Consensus 123 G~~g~~ia~~~~~---~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~--~~~l~~~l~~aD 197 (290)
|.+|..++..+.. .++++.++|+++.....++. +. .. .....+.. .+++.++++++|
T Consensus 10 G~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD-l~------------~~-----~~~~~i~~~~~~d~~~~l~~~D 71 (312)
T PRK05086 10 GGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD-LS------------HI-----PTAVKIKGFSGEDPTPALEGAD 71 (312)
T ss_pred CHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-hh------------cC-----CCCceEEEeCCCCHHHHcCCCC
Confidence 7789999987744 34689999987532100111 00 00 00012222 356556789999
Q ss_pred EEEEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 198 FIQESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 198 lVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
+||.|.-. |..+-+++.+.+.++.+...++
T Consensus 72 iVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivi 115 (312)
T PRK05086 72 VVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIG 115 (312)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 99988754 2224556666777774443333
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.88 Score=39.51 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlVi 200 (290)
+|.+|..+|..|.+.|++|.++|.+++...+.... .++. . ...+ .-+-..-|.++ +.++|.++
T Consensus 8 ~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~---~-~v~g---------d~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 8 AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDT---H-VVIG---------DATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcce---E-EEEe---------cCCCHHHHHhcCCCcCCEEE
Confidence 68999999999999999999999999987763330 0000 0 0000 00001223333 67899999
Q ss_pred EccccchHHHHHHHHHHhhh-CCCCcEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIF-MSSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~-~~~~~ii~ 228 (290)
-++..+. ...++..+... +....+++
T Consensus 72 a~t~~d~--~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 72 AATGNDE--VNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred EeeCCCH--HHHHHHHHHHHhcCCCcEEE
Confidence 9998766 34555555533 55556666
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.8 Score=42.07 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
|..|..+|..+...|. ++.++|.++.. +++........+ . ..+ ...+...+.+..+++++
T Consensus 13 G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~-~~a~g~a~Dl~~---------~-~~~--~~~~~~i~~~~~~~~~d 79 (323)
T TIGR01759 13 GQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAM-KALEGVAMELED---------C-AFP--LLAGVVATTDPEEAFKD 79 (323)
T ss_pred cHHHHHHHHHHHhCCcccCCCccEEEEEecCCcc-cccchHHHHHhh---------c-ccc--ccCCcEEecChHHHhCC
Confidence 8899999998888775 79999996521 111111111110 0 000 01112222333346899
Q ss_pred CcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 196 AIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 196 aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
||+||.+.-- |..+-+++..++.++.++++++..
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiiv 127 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLV 127 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 9999965432 123456666788888875666553
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=3 Score=37.60 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=98.9
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-.-..+|+.. ..++++.|+++-.+ |-|+.--- +++.-.++......-..+=|+|++|-..+..= + .
T Consensus 62 i~~~~~~l~~~~t-~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~-~----~ 135 (284)
T PRK14193 62 ITSIRRDLPADAT-QEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLN-E----P 135 (284)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCC-C----C
Confidence 3444445566543 33677777777544 35666544 67778888888876677779999887653310 1 1
Q ss_pred CCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHH--cCceeEEecCCHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~--~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.--|.|-..+.++++.. ||..++ ++| ....|+-++++|.+ .|..|++....
T Consensus 136 ~~~PcTp~av~~ll~~~~i~l~Gk~vvV---------iGr-S~~VGkPla~lL~~~~~~atVtvchs~------------ 193 (284)
T PRK14193 136 APLPCTPRGIVHLLRRYDVELAGAHVVV---------IGR-GVTVGRPIGLLLTRRSENATVTLCHTG------------ 193 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CCcchHHHHHHHhhccCCCEEEEeCCC------------
Confidence 11233444445555554 444443 444 57788999999988 67888766431
Q ss_pred HHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 159 HTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.++.||+||-|+. |..+++ ...++++++++
T Consensus 194 ---------------------------T~~l~~~~k~ADIvV~AvG-----kp~~i~--~~~ik~GavVI 229 (284)
T PRK14193 194 ---------------------------TRDLAAHTRRADIIVAAAG-----VAHLVT--ADMVKPGAAVL 229 (284)
T ss_pred ---------------------------CCCHHHHHHhCCEEEEecC-----CcCccC--HHHcCCCCEEE
Confidence 3456667899999999998 444443 34577999887
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=2.3 Score=38.37 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=102.5
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 84 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~ 84 (290)
+.+......+|+.. ..++.+.|+++-.++ -|+.--- .++.-..+......-..+=|+|++|=..+.. ..
T Consensus 61 Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~ 134 (284)
T PRK14190 61 GIYSELYEFPADIT-EEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMML-----GQ 134 (284)
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhc-----CC
Confidence 34555556677744 336788888775443 3555443 5777778888887666777999877543221 01
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--|.|-.++.++++..|- + + +...-.+++| ....|+-++++|.+.|..|++....
T Consensus 135 ~~~~PcTp~av~~lL~~~~i-~--l-~Gk~vvViGr-S~iVG~Pla~lL~~~~atVt~chs~------------------ 191 (284)
T PRK14190 135 DTFLPCTPHGILELLKEYNI-D--I-SGKHVVVVGR-SNIVGKPVGQLLLNENATVTYCHSK------------------ 191 (284)
T ss_pred CCCCCCCHHHHHHHHHHcCC-C--C-CCCEEEEECC-CCccHHHHHHHHHHCCCEEEEEeCC------------------
Confidence 11234555666666666542 1 1 1222234555 6788999999999999999887421
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++.+.++.||+||-|+.-.- ++. .+.++++++++-
T Consensus 192 ---------------------t~~l~~~~~~ADIvI~AvG~p~-----~i~--~~~ik~gavVID 228 (284)
T PRK14190 192 ---------------------TKNLAELTKQADILIVAVGKPK-----LIT--ADMVKEGAVVID 228 (284)
T ss_pred ---------------------chhHHHHHHhCCEEEEecCCCC-----cCC--HHHcCCCCEEEE
Confidence 3455667889999999997333 332 334679998873
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.59 Score=42.13 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-.+++++..+...|. +|.++|++++..+...+.+...+. . ..+....++.+.+.++|+||
T Consensus 135 aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~----------~-------~~~~~~~~~~~~~~~aDiVI 197 (284)
T PRK12549 135 AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFP----------A-------ARATAGSDLAAALAAADGLV 197 (284)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCC----------C-------eEEEeccchHhhhCCCCEEE
Confidence 67888999999998897 799999999877655443322110 0 01111234444678899999
Q ss_pred Eccccc
Q psy17416 201 ESVPEI 206 (290)
Q Consensus 201 eavpe~ 206 (290)
.|+|--
T Consensus 198 naTp~G 203 (284)
T PRK12549 198 HATPTG 203 (284)
T ss_pred ECCcCC
Confidence 998843
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=4.3 Score=36.61 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=91.9
Q ss_pred cCcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCce-eeeccCCCCCCCCeeeEee
Q psy17416 10 DAIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQF-IVAHPVNPPYFIPLVEIVP 83 (290)
Q Consensus 10 ~~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~-~g~hf~~P~~~~~lvEiv~ 83 (290)
+.+......+|+.. ..++.+.++++-..+ -|+.+-- ..+.-.++...+ .|++- =|+|..|-..+. .=+-..
T Consensus 62 Gi~~~~~~l~~~~~-~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~n~G~l~-~~~~~~ 138 (283)
T PRK14192 62 GMDSLKVELPQETT-TEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCLGFGRMA-MGEAAY 138 (283)
T ss_pred CCeEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCccccCccc-cCCCcc
Confidence 45666667777765 445777777775553 3555433 333444577777 45444 478877622211 011123
Q ss_pred CCCCCHHHHHHHHHHHHH-hCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHH
Q psy17416 84 AAWTSERVITRTREIMTE-IGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQ 162 (290)
Q Consensus 84 ~~~t~~~~~~~~~~~~~~-lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~ 162 (290)
++.|+...++....+.-. -||..+ ++.| .|..|+.+++++...|..|+++++..
T Consensus 139 ~p~T~~gii~~L~~~~i~l~Gk~vv---------ViG~-gg~vGkpia~~L~~~gatVtv~~~~t--------------- 193 (283)
T PRK14192 139 GSATPAGIMRLLKAYNIELAGKHAV---------VVGR-SAILGKPMAMMLLNANATVTICHSRT--------------- 193 (283)
T ss_pred cCCcHHHHHHHHHHcCCCCCCCEEE---------EECC-cHHHHHHHHHHHHhCCCEEEEEeCCc---------------
Confidence 566774444433332212 234322 3333 35689999999999999999887621
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++.+.++++|+||-|++-.- ++. .+.+++++++.
T Consensus 194 ------------------------~~L~~~~~~aDIvI~AtG~~~-----~v~--~~~lk~gavVi 228 (283)
T PRK14192 194 ------------------------QNLPELVKQADIIVGAVGKPE-----LIK--KDWIKQGAVVV 228 (283)
T ss_pred ------------------------hhHHHHhccCCEEEEccCCCC-----cCC--HHHcCCCCEEE
Confidence 123334578999999995222 222 13478888876
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=3.6 Score=37.07 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=101.8
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......+|+.. +.++++.|+++-.+ |-|+.--- +++.-..+......-..+=|+|++|=..+..= .+
T Consensus 63 i~~~~~~l~~~~s-~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g-----~~ 136 (284)
T PRK14177 63 MGSEMIRLKEQTT-TEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMG-----VE 136 (284)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcC-----CC
Confidence 4445555677654 45788888877443 34565444 46667778888876677779998775543211 01
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..+- ++ ..-.-.+++| ....|+-++++|.+.|..|++....
T Consensus 137 ~~~PcTp~avi~ll~~y~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~atVt~chs~------------------- 192 (284)
T PRK14177 137 TYLPCTPYGMVLLLKEYGI-DV---TGKNAVVVGR-SPILGKPMAMLLTEMNATVTLCHSK------------------- 192 (284)
T ss_pred CCCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CCcchHHHHHHHHHCCCEEEEeCCC-------------------
Confidence 1123444455555555432 11 1112224445 5778999999999999999877521
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
|.++.+.+++||+||-|+. |..++. ...+++|++++-
T Consensus 193 --------------------T~~l~~~~~~ADIvIsAvG-----k~~~i~--~~~ik~gavVID 229 (284)
T PRK14177 193 --------------------TQNLPSIVRQADIIVGAVG-----KPEFIK--ADWISEGAVLLD 229 (284)
T ss_pred --------------------CCCHHHHHhhCCEEEEeCC-----CcCccC--HHHcCCCCEEEE
Confidence 3456667889999999998 555554 456789998873
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.23 Score=47.30 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=43.3
Q ss_pred CCcHHhhcccCcEEEEccc----------CChHHHH------------------------HHHHHHHhhcCCCcEE--ee
Q psy17416 1 TPVLRECLEDAIFIQESVP----------EILQIKH------------------------QVYRAIDIFMSSNTIL--SS 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------e~~~~K~------------------------~~~~~~~~~~~~~~i~--~s 44 (290)
|+|+++|+.|||+|+-++. |.+.+|. ++.+++.+.| ||+++ .|
T Consensus 66 t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~T 144 (419)
T cd05296 66 TTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFT 144 (419)
T ss_pred eCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 6899999999999998752 4444444 8888999998 56644 35
Q ss_pred cCCCCChHHHhcccCCCCceeeec
Q psy17416 45 STSSFLPSVLSEHSTHRSQFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~~~~r~~g~h 68 (290)
|-..+-...+.... +.|++|+-
T Consensus 145 NP~~ivt~a~~k~~--~~rviGlc 166 (419)
T cd05296 145 NPAGIVTEAVLRHT--GDRVIGLC 166 (419)
T ss_pred CHHHHHHHHHHHhc--cCCEEeeC
Confidence 55443222332222 67888875
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.81 Score=42.11 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHcCc-------eeEEecCCHHH--HH-HHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYDVLSEQ--IE-NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d~~~e~--l~-~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|..|..+|..+...|. ++.++|.++.. +. .+++ +.+.. .....+.+++.+..++
T Consensus 14 G~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D-l~~~~---------------~~~~~~~~i~~~~y~~ 77 (326)
T PRK05442 14 GQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME-LDDCA---------------FPLLAGVVITDDPNVA 77 (326)
T ss_pred cHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh-hhhhh---------------hhhcCCcEEecChHHH
Confidence 8899999988877664 79999996531 11 1111 11110 0011122233344446
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++|||+||.+.-- |..+-+++..+|.++.++++++.
T Consensus 78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iii 127 (326)
T PRK05442 78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVL 127 (326)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 8999999965431 22345666677888776666655
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.5 Score=40.34 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=54.8
Q ss_pred cchhHHHHHHHHH-HcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA-SAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+++..+..+. ..+. +|.+|+++++..++..+++...+ | -.+...+++++++++||+|
T Consensus 137 aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g------------~~v~~~~~~~~av~~aDiV 198 (326)
T TIGR02992 137 AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G------------IDVTAATDPRAAMSGADII 198 (326)
T ss_pred CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C------------ceEEEeCCHHHHhccCCEE
Confidence 5777777776665 3564 69999999998776655443211 1 0122357788889999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+-|+|... .++. .+.+++++.+.
T Consensus 199 vtaT~s~~----p~i~--~~~l~~g~~i~ 221 (326)
T TIGR02992 199 VTTTPSET----PILH--AEWLEPGQHVT 221 (326)
T ss_pred EEecCCCC----cEec--HHHcCCCcEEE
Confidence 99999754 3332 12467887665
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.17 Score=37.57 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||++||++..+.++.+.++.+.. .+++++|+++.
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egv-------as~~~ID~~~~ 34 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGV-------ASPEDIDRAMR 34 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTS-------SSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHH
Confidence 79999999999999877776543 68999999887
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.2 Score=38.47 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=71.3
Q ss_pred cccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhcc---CCC-CCcEEEeccCCCC
Q psy17416 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH---STH-RSQFIVAHPVNPP 258 (290)
Q Consensus 183 i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~---~~~-~~r~ig~Hf~~p~ 258 (290)
+..++|-.+++.++|+||-=.|-- .....+++++..-.++++|+ +++-+++.+.+..- ..+ .-++-..||-.-|
T Consensus 127 ~~vttddreavedad~iitwlpkg-~~qpdiikkfiddipegaiv-thactipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 127 IVVTTDDREAVEDADMIITWLPKG-GVQPDIIKKFIDDIPEGAIV-THACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eEEecCcHhhhcCCCeEEEeccCC-CCCccHHHHHHhcCCCCceE-eeecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 555677777999999999888732 23456788888889999987 67778887765543 333 2356677876655
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHc
Q psy17416 259 YFIPLVEIVPAAWTSERVITRTREIMTEI 287 (290)
Q Consensus 259 ~~~~lvEvv~~~~t~~e~~~~~~~~~~~l 287 (290)
....-|-|-. ...|+|++..+.++.+.-
T Consensus 205 emkgqvyiae-gyaseeavn~lyelg~ka 232 (343)
T COG4074 205 EMKGQVYIAE-GYASEEAVNALYELGEKA 232 (343)
T ss_pred cccCcEEEec-ccccHHHHHHHHHHHHHh
Confidence 4444444444 477999999998887653
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=5.3 Score=35.94 Aligned_cols=160 Identities=11% Similarity=0.123 Sum_probs=102.0
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-+-..||+.. ..++++.|+++-.++ -|+.--- .++.-.++......-..+=|+|++|=..+. .+.
T Consensus 60 i~~~~~~l~~~~t-~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~------~g~ 132 (282)
T PRK14182 60 ITSVEHHLPATTT-QAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALS------IGI 132 (282)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHh------CCC
Confidence 4444555667754 456888888775543 4555433 577778888888766777799988855422 111
Q ss_pred C--CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHH
Q psy17416 86 W--TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQD 163 (290)
Q Consensus 86 ~--t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~ 163 (290)
. --|.|-..+.++++..+- . + ....-.+++| ....|+-++++|.+.|..|+....
T Consensus 133 ~~~~~PcTp~avi~ll~~~~i-~--l-~Gk~vvViGr-S~iVGkPla~lL~~~~AtVtichs------------------ 189 (282)
T PRK14182 133 AGVPRPCTPAGVMRMLDEARV-D--P-KGKRALVVGR-SNIVGKPMAMMLLERHATVTIAHS------------------ 189 (282)
T ss_pred CCCCCCCCHHHHHHHHHHhCC-C--C-CCCEEEEECC-CCcchHHHHHHHHHCCCEEEEeCC------------------
Confidence 1 124455555666666542 1 1 1222234555 577899999999999988887632
Q ss_pred HHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 164 YHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 164 ~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.|.++.+.++.||+||-|+.- ..++. .+.++++++++
T Consensus 190 ---------------------~T~nl~~~~~~ADIvI~AvGk-----~~~i~--~~~ik~gaiVI 226 (282)
T PRK14182 190 ---------------------RTADLAGEVGRADILVAAIGK-----AELVK--GAWVKEGAVVI 226 (282)
T ss_pred ---------------------CCCCHHHHHhhCCEEEEecCC-----cCccC--HHHcCCCCEEE
Confidence 134566678899999999983 33433 34577999887
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.76 E-value=1 Score=41.09 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=54.2
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|...|+.+...++ ++.++|++++....-...+.+. ........++..+.+++ +++++|+|
T Consensus 8 aG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~-------------~~~~~~~~~i~~~~~y~-~~~~aDiV 73 (313)
T COG0039 8 AGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHA-------------AAPLGSDVKITGDGDYE-DLKGADIV 73 (313)
T ss_pred CChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhc-------------chhccCceEEecCCChh-hhcCCCEE
Confidence 48889999988876654 7999999943322111111110 00001112333334465 58999999
Q ss_pred EEcc--cc------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESV--PE------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieav--pe------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.+. |. |..+.+++-+++.+.++...+++
T Consensus 74 vitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV 116 (313)
T COG0039 74 VITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV 116 (313)
T ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE
Confidence 9877 32 33466667778888887554444
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.9 Score=39.76 Aligned_cols=136 Identities=17% Similarity=0.105 Sum_probs=82.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|..+|..+...|..+.-+.+.+...+.+.++ +. -..|+++.+.++|+|+.
T Consensus 170 ~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~---------------~~-----------~~~d~~~~~~~sD~ivv 223 (336)
T KOG0069|consen 170 LGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY---------------YA-----------EFVDIEELLANSDVIVV 223 (336)
T ss_pred CcHHHHHHHHhhhhccceeeeecccCCchhhHHHh---------------cc-----------cccCHHHHHhhCCEEEE
Confidence 68999999999988883344444444333332220 00 03467778899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCcEEEeccCC-------CCCCCCeEEEecCC-
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVN-------PPYFIPLVEIVPAA- 270 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r~ig~Hf~~-------p~~~~~lvEvv~~~- 270 (290)
|.|-+.....-+=+++-..++++++|+...-+--+. ++.+.+. .+-.=.|+--|. |-..+..+-++|+-
T Consensus 224 ~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHig 303 (336)
T KOG0069|consen 224 NCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIG 303 (336)
T ss_pred ecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccc
Confidence 999999887777788999999999998655554444 4444432 111111221121 22233456677763
Q ss_pred CCCHHHHHHHHHH
Q psy17416 271 WTSERVITRTREI 283 (290)
Q Consensus 271 ~t~~e~~~~~~~~ 283 (290)
.++.++..+...+
T Consensus 304 s~t~~t~~~m~~~ 316 (336)
T KOG0069|consen 304 SATLETREKMAEI 316 (336)
T ss_pred cCcHHHHHHHHHH
Confidence 4556665555443
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.47 E-value=5.7 Score=35.85 Aligned_cols=161 Identities=13% Similarity=0.108 Sum_probs=99.4
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
+.-....+|+.. +.++++.|+++-.++ -|+.--- .++.-.++.....--..+=|+|++|...+..= .+.
T Consensus 69 ~~~~~~l~~~~~-~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g-----~~~ 142 (287)
T PRK14176 69 RAEDQFLPADTT-QEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIG-----DEG 142 (287)
T ss_pred EEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcC-----CCC
Confidence 333445566644 457888887775443 5666544 46677788888876677779999887654311 111
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQ 166 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~ 166 (290)
--|.|-..+.++++..+- + + ....-.+++| ....|+-++.+|.+.|..|++....
T Consensus 143 ~~PcTp~av~~ll~~~~i-~--l-~Gk~vvViGr-s~iVGkPla~lL~~~~atVtv~hs~-------------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGV-D--I-EGKNAVIVGH-SNVVGKPMAAMLLNRNATVSVCHVF-------------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCC-C--C-CCCEEEEECC-CcccHHHHHHHHHHCCCEEEEEecc--------------------
Confidence 224444555555555432 1 1 1112234444 4667899999999999999887721
Q ss_pred cCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 167 KGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 167 ~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
|.++.+.+++||+||-|+-- ..++. ...++++++++-
T Consensus 198 -------------------T~~l~~~~~~ADIvv~AvG~-----p~~i~--~~~vk~gavVID 234 (287)
T PRK14176 198 -------------------TDDLKKYTLDADILVVATGV-----KHLIK--ADMVKEGAVIFD 234 (287)
T ss_pred -------------------CCCHHHHHhhCCEEEEccCC-----ccccC--HHHcCCCcEEEE
Confidence 34556668899999987762 23332 236789998873
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.5 Score=36.95 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=56.1
Q ss_pred cccchhHHHHHHHHHH-cCcee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCc
Q psy17416 120 RIHGLIGQAWAMIFAS-AGYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 120 ri~G~~g~~ia~~~~~-~G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aD 197 (290)
-..|.||+.++..+.+ .|+++ -.+|+++..... +.+.. + .|.. ...+..++++++.+..+|
T Consensus 7 G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g~----~--~~~~---------~~~~~v~~~l~~~~~~~D 69 (124)
T PF01113_consen 7 GASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVGE----L--AGIG---------PLGVPVTDDLEELLEEAD 69 (124)
T ss_dssp TTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCHH----H--CTSS---------T-SSBEBS-HHHHTTH-S
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhhh----h--hCcC---------CcccccchhHHHhcccCC
Confidence 3358999999998887 68875 456776621100 00000 0 0000 134455789999999999
Q ss_pred EEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh
Q psy17416 198 FIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS 240 (290)
Q Consensus 198 lVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la 240 (290)
++|+... .+. +...+...+..+..+++.|+++.-+++.
T Consensus 70 VvIDfT~--p~~---~~~~~~~~~~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 70 VVIDFTN--PDA---VYDNLEYALKHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp EEEEES---HHH---HHHHHHHHHHHT-EEEEE-SSSHHHHHH
T ss_pred EEEEcCC--hHH---hHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 9999873 332 3333444444578888889888765443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.84 Score=41.68 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc---CCchHhhcccCc
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG---TPVLRECLEDAI 197 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~~l~~~l~~aD 197 (290)
|..|..+|..+...|. ++.++|.+ ...-.++. +.+ . . ..-.+.. ++++.+++++||
T Consensus 10 G~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alD-L~~------------~-~----~~~~i~~~~~~~~~y~~~~daD 70 (310)
T cd01337 10 GGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAAD-LSH------------I-N----TPAKVTGYLGPEELKKALKGAD 70 (310)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehH-hHh------------C-C----CcceEEEecCCCchHHhcCCCC
Confidence 8899999999988885 79999998 11111111 000 0 0 0113332 234445699999
Q ss_pred EEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 198 FIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 198 lVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||.+.-- |..+-+++.+++.++.+ ++++.
T Consensus 71 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vi 114 (310)
T cd01337 71 VVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALIL 114 (310)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99976532 23345556667777754 55554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=89.33 E-value=2.4 Score=36.40 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=62.7
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh-----------------HHHhcccCCCCcee
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-----------------SVLSEHSTHRSQFI 65 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~-----------------~~l~~~~~~~~r~~ 65 (290)
+..++++++|+||=|++-.. =.++++++....+. .++.+.+-.++. ..+++.+....|++
T Consensus 61 ~~~ea~~~aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VV 137 (219)
T TIGR01915 61 DNAEAAKRADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVV 137 (219)
T ss_pred ChHHHHhcCCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEe
Confidence 55678899999999997442 24555666655554 666666655554 34666664326766
Q ss_pred eeccCCCCCCC-------CeeeEeeCCCCCHHHHHHHHHHHHHh-CCccEEE
Q psy17416 66 VAHPVNPPYFI-------PLVEIVPAAWTSERVITRTREIMTEI-GMKPVTL 109 (290)
Q Consensus 66 g~hf~~P~~~~-------~lvEiv~~~~t~~~~~~~~~~~~~~l-gk~~v~v 109 (290)
..=.+.|+... ..--.+.| -+++..+.+.++.+.+ |..|+-+
T Consensus 138 ka~~~~~a~~~~~~~~~~~~~~~v~G--dd~~ak~~v~~L~~~~~G~~~vd~ 187 (219)
T TIGR01915 138 AAFHNLSAVLLQDVDDEVDCDVLVCG--DDEEAKEVVAELAGRIDGLRALDA 187 (219)
T ss_pred eccccCCHHHhcCCCCCCCCCEEEEC--CCHHHHHHHHHHHHhcCCCCcccC
Confidence 55333332211 11112333 2567888899999999 9998754
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.24 E-value=4.5 Score=35.19 Aligned_cols=86 Identities=14% Similarity=0.182 Sum_probs=54.3
Q ss_pred cchhHHHHHHHHHHc--Cc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASA--GY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
.|.+|..+...+... .+ .+.+||++.+....+.+.+ .....+++++.+.+.|+
T Consensus 8 cGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------------~~~~~s~ide~~~~~Dl 63 (255)
T COG1712 8 CGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------------GRRCVSDIDELIAEVDL 63 (255)
T ss_pred ccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------------CCCccccHHHHhhccce
Confidence 688999987777654 24 4678999998765544410 01124788887899999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 235 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 235 (290)
++||.. .+.-++..-++.+ ..-++|+. +++.+.
T Consensus 64 vVEaAS--~~Av~e~~~~~L~-~g~d~iV~-SVGALa 96 (255)
T COG1712 64 VVEAAS--PEAVREYVPKILK-AGIDVIVM-SVGALA 96 (255)
T ss_pred eeeeCC--HHHHHHHhHHHHh-cCCCEEEE-echhcc
Confidence 999987 3334444433332 13456664 566666
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.57 Score=44.73 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCcHHhhcccCcEEEEccc----------CChHHHH------------------------HHHHHHHhhcCCCcEEe--e
Q psy17416 1 TPVLRECLEDAIFIQESVP----------EILQIKH------------------------QVYRAIDIFMSSNTILS--S 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------e~~~~K~------------------------~~~~~~~~~~~~~~i~~--s 44 (290)
|+|+++|++|||+||-++. |++.+|. ++.+++.++| ||+++- |
T Consensus 65 ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~T 143 (425)
T cd05197 65 TMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFT 143 (425)
T ss_pred eCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence 6899999999999998763 4555565 8888888888 555443 4
Q ss_pred cCCCCChHHHhcccC---CCCceeeec
Q psy17416 45 STSSFLPSVLSEHST---HRSQFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~---~~~r~~g~h 68 (290)
| |+.-+...+. .+.|++|+-
T Consensus 144 N----P~di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 144 N----PAGEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred C----hHHHHHHHHHHhCCCCcEEEEC
Confidence 4 4444433331 135666664
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=89.15 E-value=3.1 Score=31.45 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=53.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC--CCCCChhhhhcccccCCchHh-hcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL--KGSLSPEEQFGLISGTPVLRE-CLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~--~~~~~~~~~~~~i~~~~~l~~-~l~~aDl 198 (290)
+|.+|..++..+...+.+|.++|.+++..+++.+ .|.. .+..... ..+.+ .+.+++.
T Consensus 6 ~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~~~i~gd~~~~---------~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 6 YGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGVEVIYGDATDP---------EVLERAGIEKADA 65 (116)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTSEEEES-TTSH---------HHHHHTTGGCESE
T ss_pred CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------cccccccccchhh---------hHHhhcCccccCE
Confidence 5788999999999977799999999998877665 2211 1111101 11221 3578999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++-+.+.+.. ...+...+.+..+.-.+++
T Consensus 66 vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 66 VVILTDDDEE-NLLIALLARELNPDIRIIA 94 (116)
T ss_dssp EEEESSSHHH-HHHHHHHHHHHTTTSEEEE
T ss_pred EEEccCCHHH-HHHHHHHHHHHCCCCeEEE
Confidence 9988886642 2333344444444455555
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.19 Score=42.21 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCcHHhhcccCcEEEEcc--------------cCChHHH----------------------HHHHHHHHhhcCCCcEEee
Q psy17416 1 TPVLRECLEDAIFIQESV--------------PEILQIK----------------------HQVYRAIDIFMSSNTILSS 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--------------~e~~~~K----------------------~~~~~~~~~~~~~~~i~~s 44 (290)
|+|++||++|||+||-++ |.+..+. .++.++++++| ||+-+-
T Consensus 64 ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~i- 141 (183)
T PF02056_consen 64 TTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLI- 141 (183)
T ss_dssp ESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEE-
T ss_pred eCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEE-
Confidence 689999999999999764 3333333 37788999998 566443
Q ss_pred cCCCCChHHHhcccC--CC-Cceeeec
Q psy17416 45 STSSFLPSVLSEHST--HR-SQFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~--~~-~r~~g~h 68 (290)
|.+| |.+.+..++. .| .|++|+.
T Consensus 142 NytN-P~~~vt~a~~r~~~~~k~vGlC 167 (183)
T PF02056_consen 142 NYTN-PMGIVTEALSRYTPKIKVVGLC 167 (183)
T ss_dssp E-SS-SHHHHHHHHHHHSTTSEEEEE-
T ss_pred eccC-hHHHHHHHHHHhCCCCCEEEEC
Confidence 3323 6666666554 35 8888875
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.71 Score=42.41 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=51.8
Q ss_pred cchhHHHHHHHHHHcCc-------eeEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 122 HGLIGQAWAMIFASAGY-------KVSLYDVLS--EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-------~V~l~d~~~--e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.|.+|..++..+...|+ ++.++|+++ +.++.-...+.+. .. ......+.+.+..++
T Consensus 9 aG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~-------------~~--~~~~~~~i~~~~~~~ 73 (323)
T cd00704 9 AGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDC-------------AF--PLLKGVVITTDPEEA 73 (323)
T ss_pred CcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhh-------------cc--cccCCcEEecChHHH
Confidence 38899999998887653 599999986 3211100000000 00 011112233444557
Q ss_pred cccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 193 LEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 193 l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+++||+||.+.-. |..+-+++..++.++++++++++
T Consensus 74 ~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iii 123 (323)
T cd00704 74 FKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVL 123 (323)
T ss_pred hCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999999965322 33345666677888875555544
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=89.06 E-value=5.6 Score=36.41 Aligned_cols=101 Identities=11% Similarity=0.128 Sum_probs=75.0
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCC-------
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF------- 75 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~------- 75 (290)
++++++++||+|+=++|..-. ...+++++....+++. +.|-..++++..+....+...+++-+=+--|...
T Consensus 52 s~~ea~~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~ 129 (314)
T TIGR00465 52 TVEEAIPQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKE 129 (314)
T ss_pred CHHHHHhcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhc
Confidence 577889999999999996533 4466777877777786 5677778999998887754456777777777763
Q ss_pred C-CeeeEe-eCCCCCHHHHHHHHHHHHHhCCc
Q psy17416 76 I-PLVEIV-PAAWTSERVITRTREIMTEIGMK 105 (290)
Q Consensus 76 ~-~lvEiv-~~~~t~~~~~~~~~~~~~~lgk~ 105 (290)
- -.-=++ .+...+.+..+.+..++..+|..
T Consensus 130 G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 130 GFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred CCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 1 111232 56667788899999999999997
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.94 Score=42.60 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|..|+.+|..+++.| .+|++.|++++..+++....... ++. ..-.+.-...+.+++++.|+||
T Consensus 9 aG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~-------------v~~--~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 9 AGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK-------------VEA--LQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc-------------cee--EEecccChHHHHHHHhcCCEEE
Confidence 5888999999999988 99999999999988876632110 000 0000111234566889999999
Q ss_pred EccccchHH
Q psy17416 201 ESVPEILQI 209 (290)
Q Consensus 201 eavpe~~~~ 209 (290)
.|+|-.+..
T Consensus 74 n~~p~~~~~ 82 (389)
T COG1748 74 NAAPPFVDL 82 (389)
T ss_pred EeCCchhhH
Confidence 999977754
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.5 Score=39.87 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=55.4
Q ss_pred eeeEEecccchhHHHHHHHHHH-cC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~-~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|.++ .|..++.-+..+.. .. -+|.+|+++++..++..++++..+ | -.+....+.++
T Consensus 120 l~iiG---aG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~------------~~v~~~~~~~e 178 (301)
T PRK06407 120 FTIIG---SGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G------------VDIRPVDNAEA 178 (301)
T ss_pred EEEEC---CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C------------CcEEEeCCHHH
Confidence 35555 45555543333332 23 479999999998877666544321 1 12334678999
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++.+||+|+-|++..- .++. .+.+++++.|..
T Consensus 179 av~~aDIV~taT~s~~----P~~~--~~~l~pg~hV~a 210 (301)
T PRK06407 179 ALRDADTITSITNSDT----PIFN--RKYLGDEYHVNL 210 (301)
T ss_pred HHhcCCEEEEecCCCC----cEec--HHHcCCCceEEe
Confidence 9999999999999665 4442 224567776653
|
|
| >KOG3124|consensus | Back alignment and domain information |
|---|
Probab=88.97 E-value=6.4 Score=34.82 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=73.1
Q ss_pred CchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEE-
Q psy17416 187 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE- 265 (290)
Q Consensus 187 ~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvE- 265 (290)
++ .+.++.+|+++.++-... -..++.++...+..+-|+.|-.-+..++.+...+..+.|++-.=+--|..+....-
T Consensus 54 ~n-~~~~~~s~v~~~svKp~~--i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv 130 (267)
T KOG3124|consen 54 TN-LEVLQASDVVFLSVKPQV--IESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASV 130 (267)
T ss_pred ch-HHHHhhccceeEeecchh--HHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEE
Confidence 44 557889999999986333 44666666665666778889888888988888887667777777766665554444
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
...+.....+-.+.+.+++...|+
T Consensus 131 ~~~g~~~~~~D~~l~~~ll~~vG~ 154 (267)
T KOG3124|consen 131 YAIGCHATNEDLELVEELLSAVGL 154 (267)
T ss_pred EeeCCCcchhhHHHHHHHHHhcCc
Confidence 455667777777899999998886
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.3 Score=40.65 Aligned_cols=95 Identities=14% Similarity=0.051 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
+|..|..++..+...|+ ++.++|+++.. +++....... .+. . ......+..+++..++++
T Consensus 8 aG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~-~~a~g~~~Dl---------~d~--~-~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 8 AGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM-KVLEGVVMEL---------MDC--A-FPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc-cccceeEeeh---------hcc--c-chhcCceeccCChHHHhC
Confidence 38899999998887554 59999986542 1111100000 000 0 011123333435345689
Q ss_pred cCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 195 DAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 195 ~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+||+||.+.-. |..+-+++..++.+..++++++..
T Consensus 75 ~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiiv 123 (324)
T TIGR01758 75 DVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLV 123 (324)
T ss_pred CCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 99999965432 122345555677777656665553
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=88.92 E-value=6.2 Score=36.73 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=98.5
Q ss_pred EEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC--CCC
Q psy17416 15 QESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA--AWT 87 (290)
Q Consensus 15 iea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~--~~t 87 (290)
.-..+|+.. ..++++.|+++-.+ |-|+.--- .++.-.++...+..-..+=|+|++|-..+.. .+ +.-
T Consensus 137 ~~~lpe~~t-e~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~-----g~~~~~f 210 (364)
T PLN02616 137 EVRLPEDST-EQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAM-----RGREPLF 210 (364)
T ss_pred EEECCCCCC-HHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhc-----CCCCCCC
Confidence 334567653 33777788777544 35666544 5777778888887667788999988665321 11 111
Q ss_pred CHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHH
Q psy17416 88 SERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQ 162 (290)
Q Consensus 88 ~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~ 162 (290)
-|.|-..+.++++.. ||..++ ++| ....|+-++++|.+.|..|++...
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvV---------IGR-S~iVGkPLa~LL~~~~ATVTicHs----------------- 263 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVV---------IGR-SNIVGMPAALLLQREDATVSIVHS----------------- 263 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CccccHHHHHHHHHCCCeEEEeCC-----------------
Confidence 233344455555554 444443 444 567789999999999999987631
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 264 ----------------------~T~nl~~~~r~ADIVIsAvG-----kp~~i~--~d~vK~GAvVI 300 (364)
T PLN02616 264 ----------------------RTKNPEEITREADIIISAVG-----QPNMVR--GSWIKPGAVVI 300 (364)
T ss_pred ----------------------CCCCHHHHHhhCCEEEEcCC-----CcCcCC--HHHcCCCCEEE
Confidence 13466667899999999998 334433 34577999887
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.2 Score=39.64 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|+.++..++..|++|.+++++++..++..+
T Consensus 125 aGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 125 AGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5788999999999999999999999887655444
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=88.79 E-value=5.4 Score=36.87 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=100.5
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC-
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA- 84 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~- 84 (290)
.+...-..+|+.. +.++++.|+++-.++ -|+.--- +++.-.++...+.--..+=|+|++|-..+.. ++
T Consensus 116 I~~~~~~l~~~~t-e~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~-----~~~ 189 (345)
T PLN02897 116 IKSLLAELPEDCT-EGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAM-----RGR 189 (345)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhc-----CCC
Confidence 3444455666653 336777777775443 4666544 6777888888887667777999888665321 11
Q ss_pred -CCCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 85 -AWTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 85 -~~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
+.--|.|-..+.+++++. ||..++ ++| ....|+-++++|.+.|..|++...
T Consensus 190 ~~~~~PCTp~avi~LL~~~~i~l~GK~vvV---------IGR-S~iVGkPla~LL~~~~ATVTicHs------------- 246 (345)
T PLN02897 190 EPLFVSCTPKGCVELLIRSGVEIAGKNAVV---------IGR-SNIVGLPMSLLLQRHDATVSTVHA------------- 246 (345)
T ss_pred CCCCcCCCHHHHHHHHHHhCCCCCCCEEEE---------ECC-CccccHHHHHHHHHCCCEEEEEcC-------------
Confidence 112244555555556654 454444 444 567789999999999988876642
Q ss_pred HHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 159 HTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.|.++.+.+++||+||-|+. |..++. .+.+++|++++
T Consensus 247 --------------------------~T~nl~~~~~~ADIvIsAvG-----kp~~v~--~d~vk~GavVI 283 (345)
T PLN02897 247 --------------------------FTKDPEQITRKADIVIAAAG-----IPNLVR--GSWLKPGAVVI 283 (345)
T ss_pred --------------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEE
Confidence 13455667889999999998 334433 34577999887
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.54 Score=38.28 Aligned_cols=47 Identities=32% Similarity=0.440 Sum_probs=37.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 49 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~ 49 (290)
|+|+++++++||+|+=++|=.- =++++++|..+.+++.++.+.+=++
T Consensus 60 t~dl~~a~~~ad~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 60 TTDLEEALEDADIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp ESSHHHHHTT-SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred ccCHHHHhCcccEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 5899999999999999998766 3799999999999999999988776
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.1 Score=41.13 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
|.+|..+|..+...|. ++.++|.+++. +++........+ . . .....+++++++..++++|
T Consensus 12 G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~-~~a~g~a~Dl~~---------~--~-~~~~~~~~i~~~~~~~~~d 78 (322)
T cd01338 12 GQIGYSLLFRIASGEMFGPDQPVILQLLELPQAL-KALEGVAMELED---------C--A-FPLLAEIVITDDPNVAFKD 78 (322)
T ss_pred cHHHHHHHHHHHhccccCCCCceEEEEEecCCcc-cccceeehhhhh---------c--c-ccccCceEEecCcHHHhCC
Confidence 8899999999888776 79999996432 111110000000 0 0 0011122233333346999
Q ss_pred CcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 196 AIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 196 aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
||+||.+.-- |..+-+++..+|.++.+++++++
T Consensus 79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iii 125 (322)
T cd01338 79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVL 125 (322)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 9999976432 23345666677888886555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.1 Score=41.17 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecC
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDV 145 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~ 145 (290)
+|.+|..++..+...| .++.++|+
T Consensus 17 aG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 17 AGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 4899999999888555 58999999
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=6.5 Score=35.58 Aligned_cols=161 Identities=9% Similarity=0.071 Sum_probs=101.7
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....+|+.. ..++++.|+++-.++ -|+.--- +++.-.++......-..+=|+|++|=..+.. ..+
T Consensus 61 i~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~~ 134 (293)
T PRK14185 61 FKSSLIRYESDVT-EEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSI-----GLP 134 (293)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhC-----CCC
Confidence 4444556777764 457888888775443 4666544 6777888888888777788999887554321 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
.--|.|-..+.++++..+- + + ..-.-.+++| ....|+-++++|.+. +..|++...
T Consensus 135 ~~~PcTp~av~~lL~~~~i-~--l-~GK~vvViGr-S~iVGkPla~lL~~~~~~~~aTVtvchs---------------- 193 (293)
T PRK14185 135 CFVSATPNGILELLKRYHI-E--T-SGKKCVVLGR-SNIVGKPMAQLMMQKAYPGDCTVTVCHS---------------- 193 (293)
T ss_pred CCCCCCHHHHHHHHHHhCC-C--C-CCCEEEEECC-CccchHHHHHHHHcCCCCCCCEEEEecC----------------
Confidence 1234455555666665442 1 1 1112234445 567789999999887 456665431
Q ss_pred HHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 162 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.++.||+||-|+. |..++. .+.+++|++++
T Consensus 194 -----------------------~T~nl~~~~~~ADIvIsAvG-----kp~~i~--~~~vk~gavVI 230 (293)
T PRK14185 194 -----------------------RSKNLKKECLEADIIIAALG-----QPEFVK--ADMVKEGAVVI 230 (293)
T ss_pred -----------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEE
Confidence 13456667889999999998 445554 35678999887
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=1 Score=41.19 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC-----hHHHhcccCC--CCceeeeccCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL-----PSVLSEHSTH--RSQFIVAHPVNPPY 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~-----~~~l~~~~~~--~~r~~g~hf~~P~~ 74 (290)
+|++++++++|+|+.+++..- + .+++ +.+++++++.+.+..+. ...++..+.. ..++..+ --|..
T Consensus 66 ~~~~e~~~~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~--~gP~~ 137 (328)
T PRK14618 66 ADPEEALAGADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVL--SGPNH 137 (328)
T ss_pred CCHHHHHcCCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEE--ECccH
Confidence 578888999999999999993 3 4444 34567776666655554 4455554421 1122111 12222
Q ss_pred CC------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 75 FI------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 75 ~~------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
.. +..-++.+ .+++.++.+..++...|..+... .|..|
T Consensus 138 a~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~-~di~g 181 (328)
T PRK14618 138 AEEIARFLPAATVVAS--PEPGLARRVQAAFSGPSFRVYTS-RDRVG 181 (328)
T ss_pred HHHHHcCCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEec-CCccc
Confidence 11 22233333 46888899999998888755543 56444
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.1 Score=41.19 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=47.1
Q ss_pred cchhHHHHHHHHHH-cC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~-~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+++..+..+.. .+ -+|.+|+++++..++..+.+++.+ | -.+....++++++.++|+|
T Consensus 140 aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g------------~~v~~~~d~~~al~~aDiV 201 (330)
T PRK08291 140 AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G------------IPVTVARDVHEAVAGADII 201 (330)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C------------ceEEEeCCHHHHHccCCEE
Confidence 57777776666653 34 579999999998776655443221 1 0123357888889999999
Q ss_pred EEccccch
Q psy17416 200 QESVPEIL 207 (290)
Q Consensus 200 ieavpe~~ 207 (290)
+-|+|...
T Consensus 202 i~aT~s~~ 209 (330)
T PRK08291 202 VTTTPSEE 209 (330)
T ss_pred EEeeCCCC
Confidence 99999764
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=2.1 Score=42.27 Aligned_cols=88 Identities=11% Similarity=0.225 Sum_probs=54.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH-hhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR-ECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~-~~l~~aDlVi 200 (290)
.|.+|+.++..+.+.|++|.++|.|++..+++.+ .|... ..++.+-...++ ..++++|.++
T Consensus 425 ~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~~~-------i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 425 YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGIRA-------VLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCCeE-------EEcCCCCHHHHHhcCccccCEEE
Confidence 6899999999999999999999999998877654 11110 001111011122 1356899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-+++++.+... +...+.+..+.-.+++
T Consensus 487 v~~~~~~~~~~-iv~~~~~~~~~~~iia 513 (558)
T PRK10669 487 LTIPNGYEAGE-IVASAREKRPDIEIIA 513 (558)
T ss_pred EEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 99998765432 2233333334444554
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.3 Score=39.08 Aligned_cols=89 Identities=12% Similarity=0.177 Sum_probs=56.8
Q ss_pred eeeEEecccchhHHHHHHHHHH-cCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFAS-AGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~-~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ .|.+++..+..+.. .+. .|.+||++++..++..+.+.+.+ + -.+...+++++
T Consensus 132 vgiiG---~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~------------~~v~~~~~~~~ 190 (326)
T PRK06046 132 VGIIG---AGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G------------CDVTVAEDIEE 190 (326)
T ss_pred EEEEC---CcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C------------ceEEEeCCHHH
Confidence 35555 67777776665553 243 67899999988877666443211 0 11233567888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
++. +|+|+.|+|... .+|. .+.+++++.|.+-
T Consensus 191 ~l~-aDiVv~aTps~~----P~~~--~~~l~~g~hV~~i 222 (326)
T PRK06046 191 ACD-CDILVTTTPSRK----PVVK--AEWIKEGTHINAI 222 (326)
T ss_pred Hhh-CCEEEEecCCCC----cEec--HHHcCCCCEEEec
Confidence 886 999999999754 3332 2346788877643
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=7.7 Score=35.21 Aligned_cols=159 Identities=11% Similarity=0.114 Sum_probs=99.4
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC-
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA- 85 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~- 85 (290)
.......||+. -+.++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|++|-..++ .+.
T Consensus 64 ~~~~~~l~~~~-t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~------~~~~ 136 (297)
T PRK14168 64 HEIQDNQSVDI-TEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLM------IGGD 136 (297)
T ss_pred EEEEEECCCCC-CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHh------cCCC
Confidence 34444455665 345677777777554 34555444 577777888888766778899998876543 121
Q ss_pred --CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHH
Q psy17416 86 --WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 86 --~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.--|.|-.++.++++..|- ++ ....-.+++| ....|+-++++|.+. +..|++....
T Consensus 137 ~~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~~~~~atVtv~hs~------------- 198 (297)
T PRK14168 137 EVKFLPCTPAGIQEMLVRSGV-ET---SGAEVVVVGR-SNIVGKPIANMMTQKGPGANATVTIVHTR------------- 198 (297)
T ss_pred CCCCcCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CCcccHHHHHHHHhcccCCCCEEEEecCC-------------
Confidence 1235555566666666542 11 1122234555 577889999999887 5677764211
Q ss_pred HHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 160 TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+. |..++. ...++++++++
T Consensus 199 --------------------------T~~l~~~~~~ADIvVsAvG-----kp~~i~--~~~ik~gavVI 234 (297)
T PRK14168 199 --------------------------SKNLARHCQRADILIVAAG-----VPNLVK--PEWIKPGATVI 234 (297)
T ss_pred --------------------------CcCHHHHHhhCCEEEEecC-----CcCccC--HHHcCCCCEEE
Confidence 3456667899999999887 333433 34577999887
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=87.75 E-value=9.6 Score=34.62 Aligned_cols=161 Identities=11% Similarity=0.160 Sum_probs=101.8
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC-
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA- 84 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~- 84 (290)
.+......+|+. -+.++++.|+++-.++ -|+.--- +++.-.++......-..+=|+|++|=..+.. .+
T Consensus 69 i~~~~~~l~~~~-s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 142 (299)
T PLN02516 69 IKSFDVDLPENI-SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAM-----KGR 142 (299)
T ss_pred CEEEEEECCCCC-CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhc-----CCC
Confidence 344445566665 3456888888875443 4555443 5777788888887667778999888544321 10
Q ss_pred -CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHH
Q psy17416 85 -AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQD 163 (290)
Q Consensus 85 -~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~ 163 (290)
+.--|.|-..+.+++++.|- ++ ..-.-.+++| ....|+-++++|.+.|..|++....
T Consensus 143 ~~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvVIGR-S~iVGkPla~lL~~~~ATVtvchs~----------------- 200 (299)
T PLN02516 143 EPLFLPCTPKGCLELLSRSGI-PI---KGKKAVVVGR-SNIVGLPVSLLLLKADATVTVVHSR----------------- 200 (299)
T ss_pred CCCCCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHHHCCCEEEEeCCC-----------------
Confidence 11124445556666666542 11 1122234555 5778999999999999999887431
Q ss_pred HHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 164 YHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 164 ~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++++.+++||+||-|+.-.. +++ .+.+++|++++
T Consensus 201 ----------------------T~nl~~~~~~ADIvv~AvGk~~-----~i~--~~~vk~gavVI 236 (299)
T PLN02516 201 ----------------------TPDPESIVREADIVIAAAGQAM-----MIK--GDWIKPGAAVI 236 (299)
T ss_pred ----------------------CCCHHHHHhhCCEEEEcCCCcC-----ccC--HHHcCCCCEEE
Confidence 3456667899999999998433 333 34577999887
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.7 Score=38.94 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=45.2
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-+|+.++..+...| .+|.+++++++..++..+.+... . .+.+..+..+.+.++|+||
T Consensus 131 aGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-----------~---------~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 131 AGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-----------G---------KAELDLELQEELADFDLII 190 (278)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-----------c---------ceeecccchhccccCCEEE
Confidence 5888999999999999 68999999998776554432210 0 0111113334578899999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|+|...
T Consensus 191 naTp~g~ 197 (278)
T PRK00258 191 NATSAGM 197 (278)
T ss_pred ECCcCCC
Confidence 9999655
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.58 E-value=1.5 Score=40.22 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCC------ChHHHhcccCCCCceeeeccCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF------LPSVLSEHSTHRSQFIVAHPVNPPY 74 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~------~~~~l~~~~~~~~r~~g~hf~~P~~ 74 (290)
|+||++++++||+|+-+||= ..=+++.+++....++++++.+.|=++ .++++.+..-...++..+--.|-
T Consensus 62 t~Dl~~a~~~ad~iv~avPs--~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~-- 137 (329)
T COG0240 62 TTDLAEALDGADIIVIAVPS--QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF-- 137 (329)
T ss_pred ccCHHHHHhcCCEEEEECCh--HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH--
Confidence 68999999999999999984 445778888888889999999887443 44455543322222333333222
Q ss_pred CCCeeeEeeCCCC-------CHHHHHHHHHHHHH
Q psy17416 75 FIPLVEIVPAAWT-------SERVITRTREIMTE 101 (290)
Q Consensus 75 ~~~lvEiv~~~~t-------~~~~~~~~~~~~~~ 101 (290)
.-||..+..| +++..+.+...+..
T Consensus 138 ---A~EVa~g~pta~~vas~d~~~a~~v~~~f~~ 168 (329)
T COG0240 138 ---AKEVAQGLPTAVVVASNDQEAAEKVQALFSS 168 (329)
T ss_pred ---HHHHhcCCCcEEEEecCCHHHHHHHHHHhCC
Confidence 3355554444 45555555555544
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.3 Score=40.51 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=48.9
Q ss_pred eeeEEecccchhHHHHHHHHHH-cC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~-~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ .|..++.-+..+.. .+ -+|.+|+++++..++..+++++ + + -.+...++.++
T Consensus 131 l~viG---aG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~----------~--------~~v~~~~~~~~ 188 (313)
T PF02423_consen 131 LGVIG---AGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L----------G--------VPVVAVDSAEE 188 (313)
T ss_dssp EEEE-----SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C----------C--------TCEEEESSHHH
T ss_pred EEEEC---CCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c----------c--------ccceeccchhh
Confidence 35555 45555543333322 23 4899999999888766664432 1 1 12344688999
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
++++||+|+-|+|..-.. .++. ...+++++.|..-.
T Consensus 189 av~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 189 AVRGADIIVTATPSTTPA--PVFD--AEWLKPGTHINAIG 224 (313)
T ss_dssp HHTTSSEEEE----SSEE--ESB---GGGS-TT-EEEE-S
T ss_pred hcccCCEEEEccCCCCCC--cccc--HHHcCCCcEEEEec
Confidence 999999999999866610 2222 23578888776433
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=10 Score=34.48 Aligned_cols=161 Identities=12% Similarity=0.094 Sum_probs=99.2
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-+-..+|+..- .++.+.|+++-.+ |-|+.--- .++.-.++...+..-..+=|+|++|-..+..= .+
T Consensus 61 i~~~~~~l~~~~~~-~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g-----~~ 134 (297)
T PRK14167 61 IEAIDVEIDPDAPA-EELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAG-----DA 134 (297)
T ss_pred CEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCC-----CC
Confidence 34444456666443 4677777777544 35666544 57777788888876667779999887664311 01
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
.--|.|-..+.++++..+- + + ..-.-.+++| ....|+-++++|.+. +..|++...
T Consensus 135 ~~~PcTp~avi~lL~~~~i-~--l-~Gk~vvViGr-S~iVGkPla~lL~~~~~~~~aTVtvchs---------------- 193 (297)
T PRK14167 135 RFKPCTPHGIQKLLAAAGV-D--T-EGADVVVVGR-SDIVGKPMANLLIQKADGGNATVTVCHS---------------- 193 (297)
T ss_pred CCCCCCHHHHHHHHHHhCC-C--C-CCCEEEEECC-CcccHHHHHHHHhcCccCCCCEEEEeCC----------------
Confidence 1124445555555555432 1 1 1112224445 567789999999876 667776532
Q ss_pred HHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 162 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.+++||+||-|+- |..++. ...++++++++
T Consensus 194 -----------------------~T~~l~~~~~~ADIvIsAvG-----kp~~i~--~~~ik~gaiVI 230 (297)
T PRK14167 194 -----------------------RTDDLAAKTRRADIVVAAAG-----VPELID--GSMLSEGATVI 230 (297)
T ss_pred -----------------------CCCCHHHHHhhCCEEEEccC-----CcCccC--HHHcCCCCEEE
Confidence 13456667889999999887 444544 25678999887
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.6 Score=42.18 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=57.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh-hcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE-CLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~-~l~~aDlVi 200 (290)
.|.+|+.++..+.+.|++++++|.|++.++++.+ .|... ..+..+-.+.+++ .+.+||.+|
T Consensus 408 ~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~v-------~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 408 FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYKV-------YYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCeE-------EEeeCCCHHHHHhcCCccCCEEE
Confidence 6899999999999999999999999998876654 22111 0011110111221 267899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCC
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts 232 (290)
-+++++-... .+...+.+..+.-.|++-..+
T Consensus 470 ~~~~d~~~n~-~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 470 ITCNEPEDTM-KIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEeCCHHHHH-HHHHHHHHHCCCCeEEEEeCC
Confidence 9999876432 333344444555566654333
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.1 Score=41.25 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=53.5
Q ss_pred cchhHHHHHHHHHHcC-------ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAG-------YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-------~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
.|.+|..++..+...| .++.++|+++. .+.+... .++ +.+. .. ....+++...++.++++
T Consensus 11 aG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~-~~~~~g~---~~D------l~d~-~~--~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 11 AGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA-LKALEGV---VME------LQDC-AF--PLLKSVVATTDPEEAFK 77 (325)
T ss_pred CCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc-cccccce---eee------hhhc-cc--cccCCceecCCHHHHhC
Confidence 3889999998887744 48999999763 1111110 000 0000 00 01124444567666799
Q ss_pred cCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 195 DAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 195 ~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||+||.+.-- |..+-+++..++.+..+++++++
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iii 125 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVL 125 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999965422 11123566677888876666555
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=86.49 E-value=1.6 Score=41.52 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=43.8
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..+...| .+|++++++++......+. .|. ..+. ..++.+.+.++|+||
T Consensus 188 aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~----------~g~-----------~~i~-~~~l~~~l~~aDvVi 245 (417)
T TIGR01035 188 AGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE----------LGG-----------EAVK-FEDLEEYLAEADIVI 245 (417)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH----------cCC-----------eEee-HHHHHHHHhhCCEEE
Confidence 5899999999998888 6899999998765433221 110 0011 135566788999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
.|++..-
T Consensus 246 ~aT~s~~ 252 (417)
T TIGR01035 246 SSTGAPH 252 (417)
T ss_pred ECCCCCC
Confidence 9986443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=11 Score=34.06 Aligned_cols=160 Identities=13% Similarity=0.151 Sum_probs=99.7
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+.-....||+.. +.++++.|+++-.++ -|+.--- .++.-..+...+..-..+=|+|++|=..+. .+.
T Consensus 56 i~~~~~~l~~~~t-~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~------~g~ 128 (287)
T PRK14181 56 MVSKAHRLPSDAT-LSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLL------LGE 128 (287)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHh------cCC
Confidence 3444455666653 446777777775443 4555433 567777888888766777799988765432 121
Q ss_pred --CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHH
Q psy17416 86 --WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 86 --~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.--|.|-..+.++++..|- ++ ..-.-.+++| ....|+-++++|.+. +..|++...
T Consensus 129 ~~~~~PcTp~avi~lL~~~~i-~l---~Gk~vvViGr-S~iVGkPla~lL~~~~~~~~AtVtvchs-------------- 189 (287)
T PRK14181 129 TDGFIPCTPAGIIELLKYYEI-PL---HGRHVAIVGR-SNIVGKPLAALLMQKHPDTNATVTLLHS-------------- 189 (287)
T ss_pred CCCCCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHHhCcCCCCCEEEEeCC--------------
Confidence 1224555556666666542 11 1112234455 567899999999887 667775321
Q ss_pred HHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 160 TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
-|.++.+.++.||+||-|+.-.- ++. .+.+++|++++
T Consensus 190 -------------------------~T~~l~~~~~~ADIvV~AvG~p~-----~i~--~~~ik~GavVI 226 (287)
T PRK14181 190 -------------------------QSENLTEILKTADIIIAAIGVPL-----FIK--EEMIAEKAVIV 226 (287)
T ss_pred -------------------------CCCCHHHHHhhCCEEEEccCCcC-----ccC--HHHcCCCCEEE
Confidence 14567777899999999998443 333 34577999887
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.22 E-value=9.2 Score=34.80 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=58.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.-|..-|+.+...|++|++--+.... -++|.+ .|+- ..+.+++++.+|+|+
T Consensus 26 YGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~-----------dGf~---------------V~~v~ea~k~ADvim 79 (338)
T COG0059 26 YGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKE-----------DGFK---------------VYTVEEAAKRADVVM 79 (338)
T ss_pred cChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHh-----------cCCE---------------eecHHHHhhcCCEEE
Confidence 5778888899999999997654333222 333333 2221 356778999999999
Q ss_pred EccccchHHHHHHHH-HHhhhCCCCcEEE
Q psy17416 201 ESVPEILQIKHQVYR-AIDIFMSSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~-~l~~~~~~~~ii~ 228 (290)
.-+|+.. -.++++ +|.+.++.+..+.
T Consensus 80 ~L~PDe~--q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 80 ILLPDEQ--QKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred EeCchhh--HHHHHHHHhhhhhcCCceEE
Confidence 9999777 668887 8999999999776
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.19 E-value=18 Score=32.78 Aligned_cols=156 Identities=10% Similarity=0.088 Sum_probs=96.6
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC-
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA- 84 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~- 84 (290)
.+.-....+|+.. ..++.+.|+++-.++ -|+.--- .++.-..+...+..-..+=|+|+.|...+.. ..
T Consensus 61 i~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 134 (295)
T PRK14174 61 MNSTVIELPADTT-EEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVM-----GHL 134 (295)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhc-----CCC
Confidence 3444445666653 447788887775553 4666544 4677777777777556777999988775431 11
Q ss_pred -CCCCHHHHHHHHHHHHHh-----CCccEEEeccceeeEEecccchhHHHHHHHHHH----cCceeEEecCCHHHHHHHH
Q psy17416 85 -AWTSERVITRTREIMTEI-----GMKPVTLTTEIRGFALNRIHGLIGQAWAMIFAS----AGYKVSLYDVLSEQIENAK 154 (290)
Q Consensus 85 -~~t~~~~~~~~~~~~~~l-----gk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~----~G~~V~l~d~~~e~l~~a~ 154 (290)
+.--|.|-.++.++++.. ||..+ +++| ....|+-++++|.+ .|..|+.....
T Consensus 135 ~~~~~PcTp~ail~ll~~y~i~l~Gk~vv---------ViGr-S~iVG~Pla~lL~~~~~~~~atVt~~hs~-------- 196 (295)
T PRK14174 135 DKCFVSCTPYGILELLGRYNIETKGKHCV---------VVGR-SNIVGKPMANLMLQKLKESNCTVTICHSA-------- 196 (295)
T ss_pred CCCcCCCCHHHHHHHHHHhCCCCCCCEEE---------EECC-CCcchHHHHHHHHhccccCCCEEEEEeCC--------
Confidence 111233444455566655 44444 3444 56778999988876 57777765532
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 155 NTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 155 ~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++.+.+++||+||-|+.-. .++. .+.++++++++
T Consensus 197 -------------------------------t~~l~~~~~~ADIvI~Avg~~-----~li~--~~~vk~GavVI 232 (295)
T PRK14174 197 -------------------------------TKDIPSYTRQADILIAAIGKA-----RFIT--ADMVKPGAVVI 232 (295)
T ss_pred -------------------------------chhHHHHHHhCCEEEEecCcc-----CccC--HHHcCCCCEEE
Confidence 234455678999999999743 3332 23458999887
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=86.16 E-value=3.3 Score=30.88 Aligned_cols=76 Identities=20% Similarity=0.121 Sum_probs=50.4
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCch---HhhcccCcEEEEcc-----ccc
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVL---RECLEDAIFIQESV-----PEI 206 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l---~~~l~~aDlVieav-----pe~ 206 (290)
.|.+|+.+|.+++.++.+.++.... +.. .++++ ..|+ .+.....|+|+..- .-.
T Consensus 24 ~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~----------~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~ 86 (112)
T PF12847_consen 24 PGARVVGVDISPEMLEIARERAAEE-------GLS----------DRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLP 86 (112)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHT-------TTT----------TTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-------CCC----------CCeEEEECccccCcccCCCCCEEEECCCccccccc
Confidence 7899999999999999888765221 000 12222 1222 22345688888866 222
Q ss_pred hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 207 LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 207 ~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+.++.+++++.+.++|+..+.
T Consensus 87 ~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 87 LDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhHHHHHHHHHHHhcCCCcEEE
Confidence 2567888999999999988765
|
... |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=86.12 E-value=2.2 Score=40.39 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=45.6
Q ss_pred eeeEeeCCCCCH-HHHHHHHHHHHH--hCCccEEEec-------cceeeEEecccchhHHHHHHHHHHcCceeEEecCCH
Q psy17416 78 LVEIVPAAWTSE-RVITRTREIMTE--IGMKPVTLTT-------EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLS 147 (290)
Q Consensus 78 lvEiv~~~~t~~-~~~~~~~~~~~~--lgk~~v~v~~-------d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~ 147 (290)
+-|.=.|...++ +.+..+..++.. +....+.+.. |.-=|+.||=.|.||.++|..+...|++|++++.+.
T Consensus 159 ~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 159 CGDVGPGRMAEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 334444455564 445666666532 4333344421 111288999999999999999999999999887653
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=3.1 Score=37.58 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=64.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHH--HHhhcCCCcEEeecCCCCChH---HHhcccC-CCCceeeeccCCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPYF 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~--~~~~~~~~~i~~snts~~~~~---~l~~~~~-~~~r~~g~hf~~P~~~ 75 (290)
++.+++++.+|+||=|++.+-.++.-++.. +-..+.++.++. ++||.++. ++++.+. +--+|+..-..-.+.-
T Consensus 47 ~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~ 125 (292)
T PRK15059 47 ETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNELGGDYLDAPVSGGEIG 125 (292)
T ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHH
Confidence 466778899999999999997777765542 333455666554 33444544 5555543 2233444211111110
Q ss_pred --CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 76 --IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 76 --~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
.--+-++.| .+++.++.+..+++.+|+..+.+ .+
T Consensus 126 a~~g~l~~~~g--G~~~~~~~~~p~l~~~g~~~~~~-G~ 161 (292)
T PRK15059 126 AREGTLSIMVG--GDEAVFERVKPLFELLGKNITLV-GG 161 (292)
T ss_pred HhcCcEEEEEc--CCHHHHHHHHHHHHHHcCCcEEe-CC
Confidence 111223333 37899999999999999988887 44
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.6 Score=39.67 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=66.8
Q ss_pred hCCccEEEeccceeeEEecc----cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChh
Q psy17416 102 IGMKPVTLTTEIRGFALNRI----HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPE 177 (290)
Q Consensus 102 lgk~~v~v~~d~~gf~~nri----~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~ 177 (290)
-|-..+.. .-.||..--++ .|..|...|.+....|.+|++.|+|.+++...-. .+. +.
T Consensus 153 ~GG~Gvll-gGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd----~f~-----~r-------- 214 (371)
T COG0686 153 NGGKGVLL-GGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD----LFG-----GR-------- 214 (371)
T ss_pred cCCceeEe-cCCCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH----hhC-----ce--------
Confidence 34446665 56666432222 4788999999988889999999999987653222 110 00
Q ss_pred hhhcccccCCchHhhcccCcEEEEccccchH-HHHHHHHHHhhhCCCCcEEE
Q psy17416 178 EQFGLISGTPVLRECLEDAIFIQESVPEILQ-IKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 178 ~~~~~i~~~~~l~~~l~~aDlVieavpe~~~-~k~~~~~~l~~~~~~~~ii~ 228 (290)
..-..+-..++++++..+|+||-+|=-.-. .=+-+.+++.+.++++++|+
T Consensus 215 -v~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 215 -VHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -eEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 001112235678889999999987632111 01234466677889999887
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.7 Score=40.11 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=63.5
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh-------HHHhcccCCCCceeeeccCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-------SVLSEHSTHRSQFIVAHPVNPP 73 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~-------~~l~~~~~~~~r~~g~hf~~P~ 73 (290)
++|++++++++|+|+=|+| ...=.++++++....++++++.|-+-++.. ..|.+.+.. .++.. ...|-
T Consensus 68 t~d~~~a~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~--l~GP~ 142 (341)
T PRK12439 68 TTDFAEAANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI--LAGPN 142 (341)
T ss_pred ECCHHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--EECCC
Confidence 4688889999999999998 444567889999989999766665556664 234444421 22211 12222
Q ss_pred CCCCeeeEeeCCCC-------CHHHHHHHHHHHHHhCCccEEEeccceee
Q psy17416 74 YFIPLVEIVPAAWT-------SERVITRTREIMTEIGMKPVTLTTEIRGF 116 (290)
Q Consensus 74 ~~~~lvEiv~~~~t-------~~~~~~~~~~~~~~lgk~~v~v~~d~~gf 116 (290)
. ..|+..+..| +++..+.+.+++..-+...... .|..|.
T Consensus 143 ~---a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s-~Di~gv 188 (341)
T PRK12439 143 I---AREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTT-DDVVGV 188 (341)
T ss_pred H---HHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEc-CchHHH
Confidence 2 2233333322 5666677777766666544433 454443
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.41 E-value=23 Score=31.86 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=100.9
Q ss_pred CcEEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 11 AIFIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 11 ~d~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
.+......||+.. +.++++.|+++-.++ -|+.--- .++.-.++......-..+=|+|+.|-..+.. ..+
T Consensus 56 i~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~-----~~~ 129 (279)
T PRK14178 56 IGSVGIELPGDAT-TRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVS-----GLP 129 (279)
T ss_pred CEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhC-----CCC
Confidence 3444555677743 447888888874443 3555433 5677778888887667777999888665331 111
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHH
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYH 165 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~ 165 (290)
.--|.|-..+.++++..+- .+ +...-.+++| ....|+.+++++...|..|+......
T Consensus 130 ~~~PcTp~av~~ll~~~~i---~l-~Gk~V~ViGr-s~~vGrpla~lL~~~~atVtv~hs~t------------------ 186 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKI---SI-AGKRAVVVGR-SIDVGRPMAALLLNADATVTICHSKT------------------ 186 (279)
T ss_pred CCCCCCHHHHHHHHHHcCC---CC-CCCEEEEECC-CccccHHHHHHHHhCCCeeEEEecCh------------------
Confidence 2235555666666666542 11 1222334444 45678999999999999998877432
Q ss_pred HcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 166 QKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 166 ~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++.+.+++||+||-|++-..-++.+ .++++++++
T Consensus 187 ---------------------~~L~~~~~~ADIvI~Avgk~~lv~~~-------~vk~GavVI 221 (279)
T PRK14178 187 ---------------------ENLKAELRQADILVSAAGKAGFITPD-------MVKPGATVI 221 (279)
T ss_pred ---------------------hHHHHHHhhCCEEEECCCcccccCHH-------HcCCCcEEE
Confidence 23445678999999999833223222 358999887
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=85.35 E-value=4.9 Score=36.80 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=53.4
Q ss_pred cchhHHHHHHHHH--HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA--SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~--~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|..++.-+..+. ..--+|.+|+++++..++..+..++ .+ -.+...++.++++++||+|
T Consensus 136 ~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~------------~~v~~~~~~~~av~~ADIV 196 (315)
T PRK06823 136 TGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG------------FAVNTTLDAAEVAHAANLI 196 (315)
T ss_pred CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC------------CcEEEECCHHHHhcCCCEE
Confidence 4555544333333 2234899999999988765553321 11 1233467888999999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
+-|++..- .+|. .+.+++++.|..-.
T Consensus 197 ~taT~s~~----P~~~--~~~l~~G~hi~~iG 222 (315)
T PRK06823 197 VTTTPSRE----PLLQ--AEDIQPGTHITAVG 222 (315)
T ss_pred EEecCCCC----ceeC--HHHcCCCcEEEecC
Confidence 99998655 4442 23567888776433
|
|
| >KOG0068|consensus | Back alignment and domain information |
|---|
Probab=85.27 E-value=7.9 Score=35.73 Aligned_cols=123 Identities=19% Similarity=0.140 Sum_probs=81.3
Q ss_pred eeeEeeCCCCC-----HHHHHHHHHHHHHhCCccEEEecc---ceeeEEecc---------cchhHHHHHHHHHHcCcee
Q psy17416 78 LVEIVPAAWTS-----ERVITRTREIMTEIGMKPVTLTTE---IRGFALNRI---------HGLIGQAWAMIFASAGYKV 140 (290)
Q Consensus 78 lvEiv~~~~t~-----~~~~~~~~~~~~~lgk~~v~v~~d---~~gf~~nri---------~G~~g~~ia~~~~~~G~~V 140 (290)
=+-|+..|..+ +-++.....+.++++...+.++.+ .-+|++--+ .|.+|++.|..+...|..|
T Consensus 93 gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~v 172 (406)
T KOG0068|consen 93 GILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHV 172 (406)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHhcCceE
Confidence 34455555554 344555667777788777777432 112221111 4789999999999999999
Q ss_pred EEecCC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhh
Q psy17416 141 SLYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI 219 (290)
Q Consensus 141 ~l~d~~-~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~ 219 (290)
+.||.- +....++. ++. -.++++++..||++-.-+|-..+-++-+-.+.-.
T Consensus 173 I~~dpi~~~~~~~a~---------------------------gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA 224 (406)
T KOG0068|consen 173 IGYDPITPMALAEAF---------------------------GVQ-LVSLEEILPKADFITLHVPLTPSTEKLLNDETFA 224 (406)
T ss_pred EeecCCCchHHHHhc---------------------------cce-eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHH
Confidence 998853 33222111 111 2467889999999999999888777666666667
Q ss_pred hCCCCcEEE
Q psy17416 220 FMSSNTILS 228 (290)
Q Consensus 220 ~~~~~~ii~ 228 (290)
.|+.|+-|+
T Consensus 225 ~mKkGVriI 233 (406)
T KOG0068|consen 225 KMKKGVRII 233 (406)
T ss_pred HhhCCcEEE
Confidence 789998776
|
|
| >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins | Back alignment and domain information |
|---|
Probab=85.26 E-value=4.6 Score=33.40 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=57.2
Q ss_pred HHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHH
Q psy17416 131 MIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIK 210 (290)
Q Consensus 131 ~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k 210 (290)
..+...+.+|.+++-+++.++++.+++++.+....--|...+++...+..+ ....+. -.++|+|+.+..... -
T Consensus 40 ~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~---i~~~I~--~~~pdiv~vglG~Pk--Q 112 (171)
T cd06533 40 ELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEE---IIERIN--ASGADILFVGLGAPK--Q 112 (171)
T ss_pred HHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHH---HHHHHH--HcCCCEEEEECCCCH--H
Confidence 334556899999999999999999988887654433344444443222111 112232 257999999887554 2
Q ss_pred HHHHHHHhhhCCCCcEEE
Q psy17416 211 HQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 211 ~~~~~~l~~~~~~~~ii~ 228 (290)
..+..++.+.++.+.++.
T Consensus 113 E~~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 113 ELWIARHKDRLPVPVAIG 130 (171)
T ss_pred HHHHHHHHHHCCCCEEEE
Confidence 244466777776665554
|
E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=85.10 E-value=5.3 Score=37.14 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=55.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|..|+.+|+.+...|.+|.+.+.+|-..-+|. + ++.+ ...++++...+|++|-
T Consensus 217 YG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------M-------------------dGf~-V~~m~~Aa~~gDifiT 270 (420)
T COG0499 217 YGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------M-------------------DGFR-VMTMEEAAKTGDIFVT 270 (420)
T ss_pred ccccchHHHHHhhcCCCeEEEEecCchHHHHHh------h-------------------cCcE-EEEhHHhhhcCCEEEE
Confidence 378899999999999999999999996432221 1 1112 2346677889999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
|+--.--+. .+--..+++++|++ |......
T Consensus 271 ~TGnkdVi~----~eh~~~MkDgaIl~-N~GHFd~ 300 (420)
T COG0499 271 ATGNKDVIR----KEHFEKMKDGAILA-NAGHFDV 300 (420)
T ss_pred ccCCcCccC----HHHHHhccCCeEEe-cccccce
Confidence 765322222 33444688999886 5554443
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=84.81 E-value=8.5 Score=29.08 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=47.5
Q ss_pred cchhHHHHHHHHHHc--Ccee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc--cC
Q psy17416 122 HGLIGQAWAMIFASA--GYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE--DA 196 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~--~a 196 (290)
.|.+|+.....+... +.++ .++|++++..+.+.++ . ++...+|+++.++ +.
T Consensus 8 ~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~--------------~~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 8 AGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------Y--------------GIPVYTDLEELLADEDV 63 (120)
T ss_dssp TSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------T--------------TSEEESSHHHHHHHTTE
T ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------h--------------cccchhHHHHHHHhhcC
Confidence 567777766555544 5565 4799999887665330 1 1224677888777 79
Q ss_pred cEEEEccccchHHHHHHHHHHhh
Q psy17416 197 IFIQESVPEILQIKHQVYRAIDI 219 (290)
Q Consensus 197 DlVieavpe~~~~k~~~~~~l~~ 219 (290)
|+|+.|+|... ..++..+..+
T Consensus 64 D~V~I~tp~~~--h~~~~~~~l~ 84 (120)
T PF01408_consen 64 DAVIIATPPSS--HAEIAKKALE 84 (120)
T ss_dssp SEEEEESSGGG--HHHHHHHHHH
T ss_pred CEEEEecCCcc--hHHHHHHHHH
Confidence 99999999776 4466555443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.71 E-value=2.5 Score=37.37 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHH-cCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFAS-AGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~-~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|.||+.++..+.. .++++. ++|++++..... .. ..+..++++++.+.++|+||
T Consensus 11 G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------------~~-------~~i~~~~dl~~ll~~~DvVi 65 (257)
T PRK00048 11 GRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------------GA-------LGVAITDDLEAVLADADVLI 65 (257)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------------CC-------CCccccCCHHHhccCCCEEE
Confidence 8899998887765 366654 478776543221 00 12234678888888899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l 239 (290)
++.|.+.. .+. +...+..+.-+...|.+++.+++
T Consensus 66 d~t~p~~~--~~~---~~~al~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 66 DFTTPEAT--LEN---LEFALEHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ECCCHHHH--HHH---HHHHHHcCCCEEEECCCCCHHHH
Confidence 88874442 233 33334445544444666665543
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=84.63 E-value=5.1 Score=36.26 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.++..+...|++|+..+++++....... .|. . -....+.-..++.+++.++|.||-
T Consensus 9 tG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~-----------~~v-----~--~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 9 TGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-----------WGA-----E--LVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh-----------cCC-----E--EEECCCCCHHHHHHHHCCCCEEEE
Confidence 4788999999999999999999998754211100 110 0 000112212456678899999998
Q ss_pred ccc
Q psy17416 202 SVP 204 (290)
Q Consensus 202 avp 204 (290)
++.
T Consensus 71 ~~~ 73 (317)
T CHL00194 71 AST 73 (317)
T ss_pred CCC
Confidence 765
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=84.47 E-value=3.4 Score=40.54 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..++..+...|. +|++++++++..+...+... |. . -......++.+++.++|+||
T Consensus 274 AG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g~--~--------i~~~~~~dl~~al~~aDVVI 334 (519)
T PLN00203 274 AGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------DV--E--------IIYKPLDEMLACAAEADVVF 334 (519)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------CC--c--------eEeecHhhHHHHHhcCCEEE
Confidence 58999999999988896 79999999987655443110 00 0 00111245666789999999
Q ss_pred EccccchH-HHHHHHHHHh
Q psy17416 201 ESVPEILQ-IKHQVYRAID 218 (290)
Q Consensus 201 eavpe~~~-~k~~~~~~l~ 218 (290)
.|++.... +.++.++.+.
T Consensus 335 sAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 335 TSTSSETPLFLKEHVEALP 353 (519)
T ss_pred EccCCCCCeeCHHHHHHhh
Confidence 99865442 3445555443
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.26 E-value=2.2 Score=40.68 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=47.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..++..+...|. +|.+++++++......+. .|. . .....++.+.+.++|+||
T Consensus 190 aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~----------~g~--~----------~~~~~~~~~~l~~aDvVI 247 (423)
T PRK00045 190 AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE----------FGG--E----------AIPLDELPEALAEADIVI 247 (423)
T ss_pred chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH----------cCC--c----------EeeHHHHHHHhccCCEEE
Confidence 58899999988888887 799999999765443331 110 0 001134556778999999
Q ss_pred EccccchH-HHHHHHHH
Q psy17416 201 ESVPEILQ-IKHQVYRA 216 (290)
Q Consensus 201 eavpe~~~-~k~~~~~~ 216 (290)
.|++..-. +..+.++.
T Consensus 248 ~aT~s~~~~i~~~~l~~ 264 (423)
T PRK00045 248 SSTGAPHPIIGKGMVER 264 (423)
T ss_pred ECCCCCCcEEcHHHHHH
Confidence 99975432 33444444
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.6 Score=36.85 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=26.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIE 151 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~ 151 (290)
.|..|..+..-....|++|+.+-+|+..+.
T Consensus 9 sG~~Gs~i~~EA~~RGHeVTAivRn~~K~~ 38 (211)
T COG2910 9 SGKAGSRILKEALKRGHEVTAIVRNASKLA 38 (211)
T ss_pred CchhHHHHHHHHHhCCCeeEEEEeChHhcc
Confidence 477888888888999999999999998764
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.13 E-value=22 Score=32.09 Aligned_cols=160 Identities=12% Similarity=0.103 Sum_probs=97.2
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
+.-....||+. -..++++.|+++-.+ |-|+.--- .++.-.++......-..+=|+|++|-..+.. ..+.
T Consensus 62 ~~~~~~l~~~~-~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~-----~~~~ 135 (286)
T PRK14184 62 VSEAFRLPADT-TQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLAL-----GLPG 135 (286)
T ss_pred EEEEEECCCCC-CHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhC-----CCCC
Confidence 33444455553 234677777776544 35666544 5677778888887667778999888655321 1111
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHH----cCceeEEecCCHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFAS----AGYKVSLYDVLSEQIENAKNTIQHTLQ 162 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~----~G~~V~l~d~~~e~l~~a~~~i~~~~~ 162 (290)
--|.|-..+.+++++.|- ++ ..-.-.+++| ....|+-++++|.+ .|..|+......
T Consensus 136 ~~PcTp~av~~lL~~~~i-~l---~Gk~vvViGr-S~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------- 195 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGL-SP---AGKKAVVVGR-SNIVGKPLALMLGAPGKFANATVTVCHSRT--------------- 195 (286)
T ss_pred CCCCCHHHHHHHHHHhCC-CC---CCCEEEEECC-CccchHHHHHHHhCCcccCCCEEEEEeCCc---------------
Confidence 224455555666666542 11 1112234445 56778999999988 677887766322
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++.+.+++||+||-|+.-.- ++. .+.++++++++
T Consensus 196 ------------------------~~l~~~~~~ADIVI~AvG~p~-----li~--~~~vk~GavVI 230 (286)
T PRK14184 196 ------------------------PDLAEECREADFLFVAIGRPR-----FVT--ADMVKPGAVVV 230 (286)
T ss_pred ------------------------hhHHHHHHhCCEEEEecCCCC-----cCC--HHHcCCCCEEE
Confidence 345556789999999997433 333 23458999887
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=83.97 E-value=6.6 Score=32.26 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcC
Q psy17416 89 ERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKG 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g 168 (290)
|.|-..+.++++..+- + + +.-.-.+++| ....|+-++.+|.+.|..|++.+..
T Consensus 17 PcTp~aii~lL~~~~~-~--l-~Gk~v~VvGr-s~~VG~Pla~lL~~~~atVt~~h~~---------------------- 69 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGI-D--L-EGKKVVVVGR-SNIVGKPLAMLLLNKGATVTICHSK---------------------- 69 (160)
T ss_dssp -HHHHHHHHHHHHTT--S--T-TT-EEEEE-T-TTTTHHHHHHHHHHTT-EEEEE-TT----------------------
T ss_pred CCCHHHHHHHHHhcCC-C--C-CCCEEEEECC-cCCCChHHHHHHHhCCCeEEeccCC----------------------
Confidence 5666777777777552 1 1 1122234455 5778999999999999988876632
Q ss_pred CCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 169 CLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 169 ~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++++.++.||+||-|+.-.--+ + .+.++++++++-
T Consensus 70 -----------------T~~l~~~~~~ADIVVsa~G~~~~i-----~--~~~ik~gavVID 106 (160)
T PF02882_consen 70 -----------------TKNLQEITRRADIVVSAVGKPNLI-----K--ADWIKPGAVVID 106 (160)
T ss_dssp -----------------SSSHHHHHTTSSEEEE-SSSTT-B--------GGGS-TTEEEEE
T ss_pred -----------------CCcccceeeeccEEeeeecccccc-----c--cccccCCcEEEe
Confidence 345555678999999999844433 2 235789998873
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=83.93 E-value=3.3 Score=37.10 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=95.9
Q ss_pred EEEEcccCChHHHHHHHHHHHhhcCCC---cEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCCC
Q psy17416 13 FIQESVPEILQIKHQVYRAIDIFMSSN---TILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWT 87 (290)
Q Consensus 13 ~viea~~e~~~~K~~~~~~~~~~~~~~---~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~t 87 (290)
..+.-.+|+. -+.+++..|+++-.++ -|+.--- -++.-..+-+.......+=|+|++|=-.+..- + +.-
T Consensus 62 ~~~~~l~~~~-t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~-~----~~~ 135 (283)
T COG0190 62 SELYDLPEDI-TEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG-E----PGF 135 (283)
T ss_pred eEEEeCCCcC-CHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcC-C----CCC
Confidence 3344444443 3567777777775443 3555432 25555677777776677779998775553321 1 112
Q ss_pred CHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHc
Q psy17416 88 SERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK 167 (290)
Q Consensus 88 ~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~ 167 (290)
-|.|-...+.++++.+- -+ ......+++| ....|+-++++|.+.++.|++....
T Consensus 136 ~PCTp~gi~~ll~~~~i---~l-~Gk~~vVVGr-S~iVGkPla~lL~~~naTVtvcHs~--------------------- 189 (283)
T COG0190 136 LPCTPAGIMTLLEEYGI---DL-RGKNVVVVGR-SNIVGKPLALLLLNANATVTVCHSR--------------------- 189 (283)
T ss_pred CCCCHHHHHHHHHHhCC---CC-CCCEEEEECC-CCcCcHHHHHHHHhCCCEEEEEcCC---------------------
Confidence 23344444555555442 11 1222233444 4567899999999999999876631
Q ss_pred CCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 168 GCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 168 g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.++.+.+++||+||-|+- |..+++ .+.+++++++.
T Consensus 190 ------------------T~~l~~~~k~ADIvv~AvG-----~p~~i~--~d~vk~gavVI 225 (283)
T COG0190 190 ------------------TKDLASITKNADIVVVAVG-----KPHFIK--ADMVKPGAVVI 225 (283)
T ss_pred ------------------CCCHHHHhhhCCEEEEecC-----Cccccc--cccccCCCEEE
Confidence 3455567889999999987 444444 56788998887
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=83.78 E-value=9 Score=33.29 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=39.8
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeE-EecC
Q psy17416 83 PAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVS-LYDV 145 (290)
Q Consensus 83 ~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~-l~d~ 145 (290)
+.+.|.--++..+...++.++... +... ++-.-+|..|+.++..+.+.|..|+ +.|.
T Consensus 6 ~~~~Tg~Gv~~~~~~~~~~~~~~l----~~~~--v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 6 REEATGRGVAYATREALKKLGIGL----AGAR--VAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccchHHHHHHHHHHHHhcCCCc----cCCE--EEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 356678888888888888877311 1111 1112369999999999999999887 6666
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=83.68 E-value=15 Score=31.12 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.6
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCC
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVL 146 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~ 146 (290)
.|.+|..++..++..|. +++++|.+
T Consensus 29 ~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 29 AGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 68899999999999997 89999977
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.36 E-value=4.1 Score=34.61 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=53.0
Q ss_pred eEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC--Cc----h
Q psy17416 116 FALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT--PV----L 189 (290)
Q Consensus 116 f~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~--~~----l 189 (290)
.+++| ....|+-+|++|.+.|..|+..|.+...+- . .+... +-+-+ .+ +
T Consensus 66 vVIGr-S~iVGkPla~lL~~~~AtVti~~~~~~~~~---~-----------~~~~~----------~hs~t~~~~~~~~l 120 (197)
T cd01079 66 TIINR-SEVVGRPLAALLANDGARVYSVDINGIQVF---T-----------RGESI----------RHEKHHVTDEEAMT 120 (197)
T ss_pred EEECC-CccchHHHHHHHHHCCCEEEEEecCccccc---c-----------ccccc----------ccccccccchhhHH
Confidence 34555 577899999999999999999987654331 0 00000 00011 12 6
Q ss_pred HhhcccCcEEEEccccchH-HHHHHHHHHhhhCCCCcEEEe
Q psy17416 190 RECLEDAIFIQESVPEILQ-IKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~-~k~~~~~~l~~~~~~~~ii~s 229 (290)
.+.++.||+||-|++-.-- ++ .+.+++|++++.
T Consensus 121 ~~~~~~ADIVIsAvG~~~~~i~-------~d~ik~GavVID 154 (197)
T cd01079 121 LDCLSQSDVVITGVPSPNYKVP-------TELLKDGAICIN 154 (197)
T ss_pred HHHhhhCCEEEEccCCCCCccC-------HHHcCCCcEEEE
Confidence 6788999999999994432 33 335679999874
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional | Back alignment and domain information |
|---|
Probab=83.12 E-value=6.6 Score=34.56 Aligned_cols=87 Identities=13% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHH
Q psy17416 133 FASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQ 212 (290)
Q Consensus 133 ~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~ 212 (290)
....|++|.+++-.++.++++.+++++.+ ...-.|...+++.+.+... +...+. -+++|+|+-+..-. ||+
T Consensus 101 ~~~~~~~v~llG~~~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e~~~---i~~~I~--~s~~dil~VglG~P---kQE 171 (243)
T PRK03692 101 AGKEGTPVFLVGGKPEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQRQA---LFERIH--ASGAKIVTVAMGSP---KQE 171 (243)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHHHHH---HHHHHH--hcCCCEEEEECCCc---HHH
Confidence 34568999999999999999999988776 4333455666654322111 112333 26899999888644 455
Q ss_pred HH-HHHhhhCCCCcEEE
Q psy17416 213 VY-RAIDIFMSSNTILS 228 (290)
Q Consensus 213 ~~-~~l~~~~~~~~ii~ 228 (290)
.| .++.+.++...++.
T Consensus 172 ~~~~~~~~~~~~~v~~g 188 (243)
T PRK03692 172 IFMRDCRLVYPDALYMG 188 (243)
T ss_pred HHHHHHHHhCCCCEEEE
Confidence 55 66777776665543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=2.7 Score=38.76 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=54.4
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccC-CCCceeeeccCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~-~~~r~~g~hf~~P~~ 74 (290)
+++++.+++||+|+-++|...+.+.-+.+++-+.++++++|...+-+--+. .|.++++ .+-+-.|+=-|.+.|
T Consensus 190 ~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 265 (330)
T PRK12480 190 DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEA 265 (330)
T ss_pred CCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCC
Confidence 579999999999999999999999999999999999999887666554444 5666664 333334444444433
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=82.90 E-value=1.6 Score=39.67 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=56.0
Q ss_pred CCcHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCc--EEeecCCCCChHHHhcccCC-CCc
Q psy17416 1 TPVLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNT--ILSSSTSSFLPSVLSEHSTH-RSQ 63 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~--i~~snts~~~~~~l~~~~~~-~~r 63 (290)
++|+++ +++||+||=++. .|.++=+++.++|.+.+ +++ |+.||-..+-..-+...... ++|
T Consensus 61 t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~sg~~~~r 138 (305)
T TIGR01763 61 TNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKSGFPKER 138 (305)
T ss_pred cCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHHCcCHHH
Confidence 467775 899999999988 46677778888899986 554 44466444333333333333 467
Q ss_pred eeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 64 ~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
++|+- |.-++......+++.+|-.|
T Consensus 139 viG~g------------------~~lds~R~~~~la~~l~v~~ 163 (305)
T TIGR01763 139 VIGQA------------------GVLDSARFRTFIAMELGVSV 163 (305)
T ss_pred EEEec------------------cchHHHHHHHHHHHHhCcCH
Confidence 77763 45555566666667777533
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.86 E-value=12 Score=33.41 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=78.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|.++++..+|+|+=|| ++..=.++++++.. ..++.++-|=..+++++.|..++. ..+++-.=+.-|+-.-.=+=
T Consensus 53 ~~~~~~~~~~advv~Lav--KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t 128 (266)
T COG0345 53 TTDNQEAVEEADVVFLAV--KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVT 128 (266)
T ss_pred cCcHHHHHhhCCEEEEEe--ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcce
Confidence 356778899999999776 33444567777777 678999999999999999999997 56666665555554333333
Q ss_pred -EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 -IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 -iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..+...+++-.+.+.+++..+|+ ++.|
T Consensus 129 ~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v 157 (266)
T COG0345 129 AISANANVSEEDKAFVEALLSAVGK-VVEV 157 (266)
T ss_pred eeecCccCCHHHHHHHHHHHHhcCC-eEEe
Confidence 334577789999999999999998 5556
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=82.83 E-value=1.5 Score=33.93 Aligned_cols=93 Identities=11% Similarity=0.156 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHc-Ccee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC-chHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASA-GYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~-G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~-~l~~~l~~aDl 198 (290)
.|.+|..+..++..+ .+++ .+++++... .+-+. ..+ +.......+.+.. +.+ .+.++|+
T Consensus 8 tG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-g~~~~---~~~-------------~~~~~~~~~~~~~~~~~-~~~~~Dv 69 (121)
T PF01118_consen 8 TGYVGRELLRLLAEHPDFELVALVSSSRSA-GKPLS---EVF-------------PHPKGFEDLSVEDADPE-ELSDVDV 69 (121)
T ss_dssp TSHHHHHHHHHHHHTSTEEEEEEEESTTTT-TSBHH---HTT-------------GGGTTTEEEBEEETSGH-HHTTESE
T ss_pred CCHHHHHHHHHHhcCCCccEEEeeeecccc-CCeee---hhc-------------cccccccceeEeecchh-HhhcCCE
Confidence 578899998888875 3454 345554411 11111 000 0000112333333 444 4699999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS 237 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~ 237 (290)
||.|+|... .+++..++ ++.++.++.+++.+...
T Consensus 70 vf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 70 VFLALPHGA--SKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp EEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred EEecCchhH--HHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 999999554 56666665 45788888888877654
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=82.46 E-value=5.7 Score=37.82 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlVi 200 (290)
.|.+|..++..+...|++|.++|++++.++.+.+... .....+ ...-...+.++ +.++|.||
T Consensus 8 ~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~--------~~~~~g---------d~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 8 AGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLD--------VRTVVG---------NGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcC--------EEEEEe---------CCCCHHHHHHcCCCcCCEEE
Confidence 5899999999999999999999999987665433100 000001 11111234444 67899999
Q ss_pred EccccchHHHHHHHHHHhhhC-CCCcEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIFM-SSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~-~~~~ii~ 228 (290)
-+++++- ....+....+.+ +...+++
T Consensus 71 ~~~~~~~--~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 71 AVTDSDE--TNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EecCChH--HHHHHHHHHHHhcCCCeEEE
Confidence 9988654 223333333333 4545555
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=40 Score=30.64 Aligned_cols=121 Identities=10% Similarity=0.017 Sum_probs=69.8
Q ss_pred cchhHHHHHHHHHH--cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC-CchHh---hccc
Q psy17416 122 HGLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT-PVLRE---CLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~--~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~l~~---~l~~ 195 (290)
.|..+......++. .+-.++.+|.+++.++.|.+.+.+. .|. .+++++. .|+.+ .+.+
T Consensus 132 cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~gL----------~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 132 SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PDL----------SKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cCc----------cCCcEEEECchhhcccccCC
Confidence 45554443333333 2447999999999999888755431 111 1222221 12111 2467
Q ss_pred CcEEEEccccc--hHHHHHHHHHHhhhCCCCcEEEeCC-CCcCHHHHhcc-----CCCCCcEEEeccCCCCC
Q psy17416 196 AIFIQESVPEI--LQIKHQVYRAIDIFMSSNTILSSST-SSFLPSVLSEH-----STHRSQFIVAHPVNPPY 259 (290)
Q Consensus 196 aDlVieavpe~--~~~k~~~~~~l~~~~~~~~ii~s~t-s~~~~~~la~~-----~~~~~r~ig~Hf~~p~~ 259 (290)
-|+|+-.+--. .+-|..+++.+.+.+++|.++...+ .++. .-+-.. +..-+.+.-.||.+++.
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r-~~LYp~v~~~~~~gf~~~~~~~P~~~v~ 266 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGAR-AFLYPVVDPCDLRGFEVLSVFHPTDEVI 266 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchH-hhcCCCCChhhCCCeEEEEEECCCCCce
Confidence 89999874222 2568999999999999999887544 2222 111111 11225677888877763
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.02 E-value=4.1 Score=41.12 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCcEEeecCCCCChHH
Q psy17416 26 HQVYRAIDIFMSSNTILSSSTSSFLPSV 53 (290)
Q Consensus 26 ~~~~~~~~~~~~~~~i~~snts~~~~~~ 53 (290)
.++|++|.+++.+++.++|-||.-.+..
T Consensus 186 ~~~~~~l~~~~~~~~~~~t~t~a~~vr~ 213 (662)
T PRK01747 186 PNLFNALARLARPGATLATFTSAGFVRR 213 (662)
T ss_pred HHHHHHHHHHhCCCCEEEEeehHHHHHH
Confidence 5899999999999999999998888873
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=10 Score=35.00 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS 147 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~ 147 (290)
+|.+|..+|..+++.|. .++++|.+.
T Consensus 32 ~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 32 AGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 68899999999999997 899999875
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.82 E-value=6.3 Score=34.53 Aligned_cols=140 Identities=20% Similarity=0.173 Sum_probs=77.7
Q ss_pred CCCCChHHHhccc-------CCCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEE
Q psy17416 46 TSSFLPSVLSEHS-------THRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFAL 118 (290)
Q Consensus 46 ts~~~~~~l~~~~-------~~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~ 118 (290)
+++++..++.... ...-.|--+|-+||....=.-|.+++..- .-|++.. |
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~-------------l~g~~vL----D------ 65 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD-------------LPGLRVL----D------ 65 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccC-------------CCCCeEE----E------
Confidence 4566665443211 23456777888888774433333332111 2233211 2
Q ss_pred ecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc---cc
Q psy17416 119 NRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL---ED 195 (290)
Q Consensus 119 nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l---~~ 195 (290)
.|--|..++..+++.|..|+..|.+++.++.|..+-.. .|..-++. ..+.++.. ..
T Consensus 66 ---vGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e-------~gv~i~y~-----------~~~~edl~~~~~~ 124 (243)
T COG2227 66 ---VGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALE-------SGVNIDYR-----------QATVEDLASAGGQ 124 (243)
T ss_pred ---ecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhh-------ccccccch-----------hhhHHHHHhcCCC
Confidence 23335567788899999999999999999888763332 22211110 11112111 12
Q ss_pred CcEEE-----EccccchHHHHHHHHHHhhhCCCCcEEEeCCCC
Q psy17416 196 AIFIQ-----ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 233 (290)
Q Consensus 196 aDlVi-----eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 233 (290)
=|+|+ |-||..- .++....+.++|+.++.-+|-.
T Consensus 125 FDvV~cmEVlEHv~dp~----~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 125 FDVVTCMEVLEHVPDPE----SFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ccEEEEhhHHHccCCHH----HHHHHHHHHcCCCcEEEEeccc
Confidence 34443 5565433 5778888899999888755543
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.60 E-value=12 Score=34.72 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=53.0
Q ss_pred cchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCC-CCCChh-h-h-hcccccCCchHhhccc
Q psy17416 122 HGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLK-GSLSPE-E-Q-FGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~-~~~~~~-~-~-~~~i~~~~~l~~~l~~ 195 (290)
.|.||+.++..+... ++++. +.|.+++......++ .|+.. +..+.. . . ...+....++++.+.+
T Consensus 9 ~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~----------~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 9 YGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVE----------KGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHh----------cCCCccccCccccccccCCceEEcCChhHhhcc
Confidence 399999988877654 56654 456665433332221 12110 000000 0 0 0235555677777789
Q ss_pred CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC
Q psy17416 196 AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 233 (290)
Q Consensus 196 aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 233 (290)
+|+|++|.|.... .+... .++..|+.++.+++.
T Consensus 79 vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 ADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred CCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence 9999999996553 33333 344456666666664
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=81.59 E-value=6.4 Score=32.09 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=45.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHH--H-HHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQ--I-ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~--l-~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
+|+++ .-+.+.++++..+...|..+.+.....-. . ...++..++...+ .-..+++++++++
T Consensus 6 ~~vGD-~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~---------------~g~~i~~~~~~~e 69 (158)
T PF00185_consen 6 AYVGD-GHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKK---------------NGGKITITDDIEE 69 (158)
T ss_dssp EEESS-TTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHH---------------HTTEEEEESSHHH
T ss_pred EEECC-CCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHH---------------hCCCeEEEeCHHH
Confidence 35554 34667788899999999998887655421 1 1223322322211 0135677899999
Q ss_pred hcccCcEEEEccc
Q psy17416 192 CLEDAIFIQESVP 204 (290)
Q Consensus 192 ~l~~aDlVieavp 204 (290)
+++++|+|+--.-
T Consensus 70 ~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 70 ALKGADVVYTDRW 82 (158)
T ss_dssp HHTT-SEEEEESS
T ss_pred hcCCCCEEEEcCc
Confidence 9999999985544
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.55 E-value=5.4 Score=38.70 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=43.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.++..+...|++|.+++++++..+...+... + .... ..++. .+.++|+||.
T Consensus 340 aGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~---------~---~~~~----------~~~~~-~l~~~DiVIn 396 (477)
T PRK09310 340 AGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ---------G---KAFP----------LESLP-ELHRIDIIIN 396 (477)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------c---ceec----------hhHhc-ccCCCCEEEE
Confidence 4788999999999999999999999876654433110 0 0000 11222 2568999999
Q ss_pred ccccchH
Q psy17416 202 SVPEILQ 208 (290)
Q Consensus 202 avpe~~~ 208 (290)
|+|....
T Consensus 397 atP~g~~ 403 (477)
T PRK09310 397 CLPPSVT 403 (477)
T ss_pred cCCCCCc
Confidence 9997764
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.35 E-value=6.9 Score=33.91 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=68.2
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccC--CCCceeeeccCCCC--CCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST--HRSQFIVAHPVNPP--YFI 76 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~--~~~r~~g~hf~~P~--~~~ 76 (290)
|+|=.||+.|||+||-=.|- -...-.+++++-.-.++++|+ +|+-++|.+.+..-.. +++ -+.+--|+|. +-|
T Consensus 130 ttddreavedad~iitwlpk-g~~qpdiikkfiddipegaiv-thactipttkf~kifed~gre-dlnvtsyhpg~vpem 206 (343)
T COG4074 130 TTDDREAVEDADMIITWLPK-GGVQPDIIKKFIDDIPEGAIV-THACTIPTTKFKKIFEDMGRE-DLNVTSYHPGTVPEM 206 (343)
T ss_pred ecCcHhhhcCCCeEEEeccC-CCCCccHHHHHHhcCCCCceE-eeecccchHHHHHHHHHhCcc-ccceeccCCCCCccc
Confidence 56778899999999976653 334456777777778888876 6777899997665442 122 2344444443 223
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
+----+.....|++++..+.++.+.-.-...
T Consensus 207 kgqvyiaegyaseeavn~lyelg~karg~af 237 (343)
T COG4074 207 KGQVYIAEGYASEEAVNALYELGEKARGLAF 237 (343)
T ss_pred cCcEEEecccccHHHHHHHHHHHHHhhcccc
Confidence 3333455667899999999998877443333
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=81.14 E-value=4.2 Score=36.53 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=44.4
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-++++++..+...|. +|.+++|+++..++..+.+.. .+.. ..+....++.+.+.++|+||
T Consensus 133 aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~-------~~~~----------~~~~~~~~~~~~~~~~DiVI 195 (282)
T TIGR01809 133 AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQ-------VGVI----------TRLEGDSGGLAIEKAAEVLV 195 (282)
T ss_pred CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhh-------cCcc----------eeccchhhhhhcccCCCEEE
Confidence 68888999999998886 799999998876554442211 0000 00111123334567899999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|+|-..
T Consensus 196 naTp~g~ 202 (282)
T TIGR01809 196 STVPADV 202 (282)
T ss_pred ECCCCCC
Confidence 9999654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.13 E-value=9.3 Score=34.88 Aligned_cols=48 Identities=8% Similarity=-0.076 Sum_probs=30.6
Q ss_pred ccccCCchHhhcccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 182 LISGTPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 182 ~i~~~~~l~~~l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
.++.+++..+++++||+||.+.-- |..+-+++.++|.+++.++++++.
T Consensus 45 ~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aiviv 106 (309)
T PLN00135 45 GVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLV 106 (309)
T ss_pred CcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 344445633468999999976543 333456666778886566666553
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=81.11 E-value=5.6 Score=29.99 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc
Q psy17416 126 GQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE 205 (290)
Q Consensus 126 g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe 205 (290)
...++..|...|.+|..||.--........ .+ ..++...++++++++++|.||.+++=
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~--~~--------------------~~~~~~~~~~~~~~~~~D~vvl~t~h 76 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYVDEEEIKEL--GK--------------------LEGVEVCDDLEEALKGADAVVLATDH 76 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTSHHHHHHHH--CH--------------------HHCEEEESSHHHHHTTESEEEESS--
T ss_pred HHHHHHHHHHCCCEEEEECCccChHHHHhh--CC--------------------ccceEEecCHHHHhcCCCEEEEEecC
Confidence 345677788889999999976543221110 00 12345567888899999999999872
Q ss_pred chHHHHH-HHHHHhhhCCCCcEEE
Q psy17416 206 ILQIKHQ-VYRAIDIFMSSNTILS 228 (290)
Q Consensus 206 ~~~~k~~-~~~~l~~~~~~~~ii~ 228 (290)
+- -+. -++++...++.+.+|.
T Consensus 77 ~~--f~~l~~~~~~~~~~~~~~ii 98 (106)
T PF03720_consen 77 DE--FRELDWEEIAKLMRKPPVII 98 (106)
T ss_dssp GG--GGCCGHHHHHHHSCSSEEEE
T ss_pred HH--HhccCHHHHHHhcCCCCEEE
Confidence 22 222 3455666676666665
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.80 E-value=3.4 Score=36.87 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
.+-+|.++|..+++.|++|+++.|+.+.+++..+.+++..
T Consensus 15 SsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~ 54 (265)
T COG0300 15 SSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT 54 (265)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh
Confidence 4668999999999999999999999999998888777653
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=80.67 E-value=7.3 Score=29.87 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=30.4
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
.++|+||.|+|.+... ++...+...+.++++++..+|.+..
T Consensus 64 ~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 64 LAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred cCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 5899999999988644 4444445567899999877777764
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=80.44 E-value=3.3 Score=37.56 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
..-+|++.|.-+++.|++|.++.|+++.+++..+.|++..
T Consensus 58 TDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~ 97 (312)
T KOG1014|consen 58 TDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY 97 (312)
T ss_pred CCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999888877654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 290 | ||||
| 3f3s_A | 313 | The Crystal Structure Of Human Lambda-Crystallin, C | 8e-35 | ||
| 3ado_A | 319 | Crystal Structure Of The Rabbit L-Gulonate 3-Dehydr | 2e-32 | ||
| 3hdh_A | 302 | Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge | 2e-05 | ||
| 1f12_A | 310 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- | 3e-05 | ||
| 4dyd_A | 283 | Substrate-Directed Dual Catalysis Of Dicarbonyl Com | 3e-05 | ||
| 1lso_A | 302 | Crystal Structure Of The S137a Mutant Of L-3-Hydrox | 6e-05 | ||
| 1f0y_A | 302 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac | 6e-05 | ||
| 1m75_A | 302 | Crystal Structure Of The N208s Mutant Of L-3-Hydrox | 6e-05 | ||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 7e-05 | ||
| 1m76_A | 302 | Crystal Structure Of The S137c Mutant Of L-3-Hydrox | 8e-05 | ||
| 1lsj_A | 302 | Crystal Structure Of The E110q Mutant Of L-3-hydrox | 2e-04 | ||
| 1il0_A | 302 | X-Ray Crystal Structure Of The E170q Mutant Of Huma | 2e-04 | ||
| 1zej_A | 293 | Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog | 2e-04 | ||
| 3had_A | 308 | Biochemical Characterization And Structure Determin | 8e-04 |
| >pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313 | Back alignment and structure |
|
| >pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase Length = 319 | Back alignment and structure |
|
| >pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302 | Back alignment and structure |
|
| >pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310 | Back alignment and structure |
|
| >pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283 | Back alignment and structure |
|
| >pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302 | Back alignment and structure |
|
| >pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302 | Back alignment and structure |
|
| >pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293 | Back alignment and structure |
|
| >pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-26
Identities = 38/170 (22%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + + +E
Sbjct: 24 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 83
Query: 180 -FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 238
I+ + + + E++ E L++K+++++ +D F + +TI +S+TSS +
Sbjct: 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 143
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
++ +T + +F H NP + LVE++ TS++ + +G
Sbjct: 144 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 193
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-17
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 63
+ + E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +
Sbjct: 94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDR 153
Query: 64 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
F H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 154 FAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVS-CKDTPGFIVNRL 210
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 8/169 (4%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ--- 179
G +G A + AS G++V LYD+ +E + A + I L +G L+ E
Sbjct: 14 GTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLN----SRVTRGKLTAETCERT 69
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239
+ + L A + E+ E L++K ++ + T+L+++TSS + +
Sbjct: 70 LKRLIPVTDIHA-LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAI 128
Query: 240 SEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ + + H NP + LVE+V T+ V+ + E+ G
Sbjct: 129 AAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWG 177
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 8e-17
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
L A + E+ E L++K ++ + T+L+++TSS + ++ + +
Sbjct: 82 LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGL 141
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H NP + LVE+V T+ V+ + E+ G +PV GF +NR+
Sbjct: 142 HFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVR-CHSTPGFIVNRV 194
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 7/103 (6%)
Query: 19 PEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL 78
+V + D + +L T L+ I +
Sbjct: 298 VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKM------AGKV 351
Query: 79 VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
V I AA + + + + G K V + G + R
Sbjct: 352 VTIAAAAVNPDSATRKAIYYLQQQG-KTVLQIADYPGMLIWRT 393
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-22
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---Q 179
GL+G A + Y V L +V + +E ++ LQ KGS+S E+
Sbjct: 321 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQ----SRVRKGSMSQEKFEKT 376
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SV 238
L+ G+ D + E+V E + +K Q++ ++ + + IL+S+TS+ + +
Sbjct: 377 MSLLKGSLDYES-FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST-IDLNK 434
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
+ E + + + + AH +P + +PL+EIV TS +VI
Sbjct: 435 IGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDL 476
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 66
D + E+V E + +K Q++ ++ + + IL+S+TS+ + + + E + + + +
Sbjct: 389 FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST-IDLNKIGERTKSQDRIVG 447
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
AH +P + +PL+EIV TS +VI ++ +I PV + GFA+NR+
Sbjct: 448 AHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV-VVGNCTGFAVNRM 501
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 3e-22
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---Q 179
G++G A AS G + + D+ IE L KG ++P +
Sbjct: 323 GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLV----GRVDKGRMTPAKMAEV 378
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SV 238
I T + + + E+V E ++K V ++ + + IL+S+TS+ + S+
Sbjct: 379 LNGIRPTLSYGD-FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST-ISISL 436
Query: 239 LSEHSTHRSQFIVAH---PVNPPYFIPLVEIVPAAWTSERVITRT 280
L++ F+ H PV+ +PLVE++ +S+ + T
Sbjct: 437 LAKALKRPENFVGMHFFNPVH---MMPLVEVIRGEKSSDLAVATT 478
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 9e-14
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 66
+ + E+V E ++K V ++ + + IL+S+TS+ + S+L++ F+
Sbjct: 391 FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST-ISISLLAKALKRPENFVG 449
Query: 67 AH---PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H PV+ +PLVE++ +S+ + T ++G P+ + + GF +NR+
Sbjct: 450 MHFFNPVH---MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI-VVNDCPGFLVNRV 503
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 5e-22
Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE-QFG 181
G +G+ A+ FA G V + +Q++ AK I TL+ K + + +
Sbjct: 325 GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLE----KEASRAHQNGQASAKP 380
Query: 182 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLS 240
+ + +E L + E+V E + +K +V+ + L ++TS+ L ++
Sbjct: 381 KLRFSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA-LNVDDIA 438
Query: 241 EHSTHRSQFIVAH---PVNPPYFIPLVEIVPAAWTSERVITRT 280
+ I H P + + L+E++P+ ++S I
Sbjct: 439 SSTDRPQLVIGTHFFSPAH---VMRLLEVIPSRYSSPTTIATV 478
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-14
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 66
L + E+V E + +K +V+ + L ++TS+ L ++ + I
Sbjct: 391 LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA-LNVDDIASSTDRPQLVIG 449
Query: 67 AH---PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H P + + L+E++P+ ++S I + +IG V + GF NR+
Sbjct: 450 THFFSPAH---VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV-VVGNCYGFVGNRM 503
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 8e-22
Identities = 34/167 (20%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ-FG 181
G +G+ A+ FA G V + +Q++ AK I TL+ K + + +
Sbjct: 46 GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLE----KEASRAHQNGQASAKP 101
Query: 182 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 241
+ + +E L + E+V E + +K +V+ + L ++TS+ ++
Sbjct: 102 KLRFSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS 160
Query: 242 HSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ I H +P + + L+E++P+ ++S I + +IG
Sbjct: 161 STDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG 207
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 3e-14
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 67
L + E+V E + +K +V+ + L ++TS+ ++ + I
Sbjct: 112 LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGT 171
Query: 68 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-HGLIG 126
H +P + + L+E++P+ ++S I + +IG V + GF NR+
Sbjct: 172 HFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV-VVGNCYGFVGNRMLAPYYN 230
Query: 127 QAWAMI 132
Q + ++
Sbjct: 231 QGFFLL 236
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-21
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
GL+G+ A+ A + ++V L DV + +E A+ I L
Sbjct: 21 GLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEEL------------------LSK 61
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I T L E ++D + E+V E L K +V R ++ N L S+TS ++E
Sbjct: 62 IEFTTTL-EKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVDDIAER 118
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
S+F+ H +NPP+ +PLVEIV + +T + + + E+G
Sbjct: 119 LDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELG 164
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-17
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 65
E ++D + E+V E L K +V R ++ N L S+TS ++E S+F+
Sbjct: 69 EKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVDDIAERLDSPSRFL 126
Query: 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121
H +NPP+ +PLVEIV + +T + + + E+G + V +NR
Sbjct: 127 GVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCK---GQSLVNRF 179
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-19
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 13/162 (8%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---Q 179
G +G+A A+ F AG + L ++ + + + L+ +
Sbjct: 63 GTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMY-------AREKSFKRLNDKRIEKI 115
Query: 180 FGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SV 238
+ T + L + I ESV E +++K +++ ++ S I ++TSS L +
Sbjct: 116 NANLKITSDFHK-LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS-LDLNE 173
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRT 280
+S S + H NP I LVEI+ + TS + I
Sbjct: 174 ISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATA 215
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-14
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 8 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 66
L + I ESV E +++K +++ ++ S I ++TSS L + +S S +
Sbjct: 128 LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS-LDLNEISSVLRDPSNLVG 186
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI-HGLI 125
H NP I LVEI+ + TS + I + I PV L + F NR+ H
Sbjct: 187 IHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPV-LVGNCKSFVFNRLLHVYF 245
Query: 126 GQAWAMIFASAGYKVSLYDVLSEQIENA 153
Q+ ++ G L QI+
Sbjct: 246 DQSQKLM-YEYG-------YLPHQIDKI 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 4e-07
Identities = 49/321 (15%), Positives = 98/321 (30%), Gaps = 110/321 (34%)
Query: 6 EC--LED---AIFIQESVPEILQIKH---QVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 57
+C ++D +I +E + I+ K R +S F+ VL
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVL--- 87
Query: 58 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 117
Y + + T R+ P ++ T +
Sbjct: 88 -------------RINY----------KFLMSPIKTEQRQ--------P-SMMTRMYIEQ 115
Query: 118 LNRIHGLIGQAWAMIFASAGYKVS---LYDVLSE---QIENAKNTIQHTLQDYHQKGCLK 171
+R++ Q +FA Y VS Y L + ++ AKN + + G K
Sbjct: 116 RDRLYN-DNQ----VFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGV-----LGSGK 163
Query: 172 GSLSPEEQFGLISGTPVLR-----ECLEDAIF--------IQESVPEILQIKHQVYRAID 218
++ + V ++ IF E+V E+LQ ++ ID
Sbjct: 164 TWVALD----------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQID 210
Query: 219 IFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE---- 274
N S SS + + + + + PY L+ ++ ++
Sbjct: 211 ----PNWTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLL-VLLNVQNAKAWNA 261
Query: 275 -----R--VITRTREIMTEIG 288
+ + TR +++ +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLS 282
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 100.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 100.0 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.98 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.97 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.97 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.96 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.96 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.96 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.96 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.95 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.95 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.95 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.95 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.95 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.95 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.94 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.94 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.94 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.64 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.6 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.58 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.4 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.31 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.3 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.29 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.29 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.26 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.24 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.24 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.24 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.24 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.2 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.16 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.15 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.14 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.14 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.13 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.11 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.09 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.09 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.08 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.07 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.03 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.02 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.0 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.99 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 98.99 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.98 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.98 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 98.96 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 98.95 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.94 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.93 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.91 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.9 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 98.87 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 98.86 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.84 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.83 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 98.82 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.82 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 98.81 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.8 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.8 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 98.79 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.77 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.74 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.71 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.7 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.69 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.68 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.68 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.67 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.66 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.65 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 98.64 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.63 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.62 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.59 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.58 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.58 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.56 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.55 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.53 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.52 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.51 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.48 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.45 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.45 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 98.44 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.4 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.4 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.37 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.36 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.35 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.35 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.35 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.34 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.34 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.33 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.31 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.3 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 98.29 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 98.28 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.27 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.26 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.25 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.23 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.21 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.2 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.19 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.18 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 98.18 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 98.16 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.16 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 98.14 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.14 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.13 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.12 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 98.06 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.05 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 98.05 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.05 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.04 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.02 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.01 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 98.01 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 98.0 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 97.96 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.95 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.95 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.94 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.93 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.92 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.9 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 97.12 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.88 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.88 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.87 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 97.87 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.87 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.86 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 97.84 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.83 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 97.81 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.79 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.78 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.77 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.74 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.74 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.73 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.73 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.73 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 97.71 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.7 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.7 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 97.68 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.67 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 97.66 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.66 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.65 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.65 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.64 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 97.62 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.61 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 97.6 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 97.6 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 97.6 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.58 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.57 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.55 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.54 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.51 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.51 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 97.5 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 97.5 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.49 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.49 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 97.47 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.46 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.43 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 97.4 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 97.4 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.34 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.34 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.32 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.3 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 97.3 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.28 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.25 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.21 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.15 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 97.14 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.1 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.1 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 97.04 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 97.04 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.03 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 96.98 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.98 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.95 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 96.95 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 96.91 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.86 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 96.82 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.81 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 96.79 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 96.75 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.69 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 96.62 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 96.6 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.6 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.6 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 96.58 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.52 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.52 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 96.51 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.5 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.49 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.47 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.43 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.38 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.38 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.37 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.37 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 96.36 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 96.3 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.29 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 96.26 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 96.24 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.19 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.17 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.17 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.16 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 96.14 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.11 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.04 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 96.01 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.01 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 96.0 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 95.97 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 95.96 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 95.93 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.93 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 95.79 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 95.74 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 95.73 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 95.72 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.72 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 95.69 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.59 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.58 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 95.56 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.55 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 95.55 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 95.53 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 95.49 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 95.48 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 95.42 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 95.41 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.32 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.29 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.23 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 95.23 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 95.08 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 94.97 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.75 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 94.7 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 94.7 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 94.68 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 94.67 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 94.66 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.57 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 94.41 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 94.15 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 94.13 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 94.08 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.98 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 93.7 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 93.65 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 93.59 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 93.56 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 93.53 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.49 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.34 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 93.28 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 93.25 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 93.16 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 92.96 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 92.87 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 92.76 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 92.68 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 92.68 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 92.62 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 92.61 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 92.48 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 92.33 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 92.32 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 92.28 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 92.26 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 92.24 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 92.11 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 92.0 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.91 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 91.84 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 91.46 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 91.17 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 91.14 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 91.05 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 90.89 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.73 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 90.58 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 90.56 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 90.49 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 90.09 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 89.96 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 89.96 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 89.79 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 89.56 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 89.34 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 89.18 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 89.15 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 88.95 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 88.88 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 88.84 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 88.81 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 88.67 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 88.49 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 88.33 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 88.26 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 88.15 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 88.07 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 88.05 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 88.02 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 87.85 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 87.34 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 87.25 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 86.45 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 86.43 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 86.35 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 86.34 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 86.27 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 85.97 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 85.97 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 85.89 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 85.84 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 85.19 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 85.18 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 84.9 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 84.88 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 84.59 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 84.34 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 84.27 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 84.06 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 84.04 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 83.9 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 83.74 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 84.04 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 83.47 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 83.28 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 82.74 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 82.16 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 82.15 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 82.12 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 82.06 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 82.06 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 82.04 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 82.0 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 81.62 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 81.61 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 81.37 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 81.22 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 81.07 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 80.99 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 80.96 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 80.7 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 80.65 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 80.17 |
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=326.53 Aligned_cols=148 Identities=39% Similarity=0.592 Sum_probs=141.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+|||||+|++++|+++|++||++|+||||||||||+|++++|++.++||+||+|+||||||++|||||
T Consensus 78 ~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVE 157 (319)
T 3ado_A 78 CTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVE 157 (319)
T ss_dssp ECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEE
T ss_pred ccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||+|+.||+++++.+.+|++++||+|+++++|+|||++||++..+.++...++..++ .+++++|+++.
T Consensus 158 iv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGv-------as~edID~~~~ 225 (319)
T 3ado_A 158 LVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGI-------VSPSDLDLVMS 225 (319)
T ss_dssp EEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTS-------SCHHHHHHHHH
T ss_pred hcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 999999999999999999999999999888999999999999999999777776654 78999999886
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=299.54 Aligned_cols=169 Identities=47% Similarity=0.776 Sum_probs=164.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||++||+.++..|++|+++|.+++.++++.+++++.+.++.++|.+++.....+.+++|+.++|+++++++||+|||
T Consensus 14 aG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~ad~ViE 93 (319)
T 3ado_A 14 SGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHIQE 93 (319)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTTEEEEEE
T ss_pred CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhccCcEEee
Confidence 79999999999999999999999999999999999999999999999998877788889999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||+++||||||++|++|++++++++.
T Consensus 94 av~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~ 173 (319)
T 3ado_A 94 CVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTH 173 (319)
T ss_dssp CCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 174 ~~~~~~gk~ 182 (319)
T 3ado_A 174 ALMRKIGQS 182 (319)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHhCCc
Confidence 999999984
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=319.24 Aligned_cols=144 Identities=18% Similarity=0.290 Sum_probs=134.5
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|++ ++++||||||||+||+++|+++|++||++|+||||||||||+|||++|++.+++|+||+|||||||++.||||||
T Consensus 386 ~~~~-~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEv 464 (742)
T 3zwc_A 386 SSTK-ELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEV 464 (742)
T ss_dssp SCGG-GGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEE
T ss_pred CcHH-HHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEE
Confidence 4444 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|+|++||+++++.+.+|++++||+||++ +|+|||++||++..+.++...++.. | .+++.+++++.
T Consensus 465 i~g~~Ts~e~~~~~~~~~~~lgK~pV~v-kd~pGFi~NRi~~~~~~ea~~l~~e-G-------~~~~~id~a~~ 529 (742)
T 3zwc_A 465 IPSRYSSPTTIATVMSLSKKIGKIGVVV-GNCYGFVGNRMLAPYYNQGFFLLEE-G-------SKPEDVDGVLE 529 (742)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEC-CCSTTTTHHHHHHHHHHHHHHHHHT-T-------CCHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCccc-CCCCCccHHHHhhHHHHHHHHHHHc-C-------CCHHHHHHHHH
Confidence 9999999999999999999999999998 8999999999999999997766654 5 57888888775
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=279.92 Aligned_cols=256 Identities=18% Similarity=0.227 Sum_probs=193.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|++ ++++||+|||||+|++++|+++|++|++.+++++|++||||++++++|++.+.+|+|++|+|||||++.|+++||
T Consensus 77 ~~~~-~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvev 155 (483)
T 3mog_A 77 TDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEV 155 (483)
T ss_dssp CCGG-GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEE
T ss_pred CCHH-HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEE
Confidence 5675 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTL 161 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~ 161 (290)
++|..|++++++.+.++++.+||+|+.+ +|+|||++||++..+..+...++.+.| .++++++++++.
T Consensus 156 v~g~~Ts~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~-------~~~~~id~a~~~----- 222 (483)
T 3mog_A 156 VSGLATAAEVVEQLCELTLSWGKQPVRC-HSTPGFIVNRVARPYYSEAWRALEEQV-------AAPEVIDAALRD----- 222 (483)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEE-ESCTTTTHHHHTHHHHHHHHHHHHTTC-------SCHHHHHHHHHH-----
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCEEEEE-eccCcchHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHh-----
Confidence 9999999999999999999999999999 799999999999998888777766665 679999988862
Q ss_pred HHHHHcCCCCCCCChhhhhcccccC------CchHhhc-ccCcEEEEccccchHHHHHHHHH--H--------hhhC---
Q psy17416 162 QDYHQKGCLKGSLSPEEQFGLISGT------PVLRECL-EDAIFIQESVPEILQIKHQVYRA--I--------DIFM--- 221 (290)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~i~~~------~~l~~~l-~~aDlVieavpe~~~~k~~~~~~--l--------~~~~--- 221 (290)
..|+..++ .++.+.+... ..+.+.. .+..+ .|. .+.+.++++ + -.+-
T Consensus 223 ----~~G~p~GP---~~l~D~~Gld~~~~v~~~~~~~~~~~~~~----~~~--~~~~~~v~~g~lG~k~g~GfY~y~~~~ 289 (483)
T 3mog_A 223 ----GAGFPMGP---LELTDLIGQDVNFAVTCSVFNAFWQERRF----LPS--LVQQELVIGGRLGKKSGLGVYDWRAER 289 (483)
T ss_dssp ----TTCCSSCH---HHHHHHHCHHHHHHHHHHHHHHTTSCGGG----CCC--HHHHHHHHTTCCBGGGTBSSSBTTSCC
T ss_pred ----cCCCCCCH---HHHHHHhchHHHHHHHHHHHHHhcCCCcc----Cch--HHHHHHHHCCCCceeCCCEeEECCCCC
Confidence 13443332 2222222110 0000000 00000 010 111122110 0 0000
Q ss_pred -------C--C-----------------CcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHH
Q psy17416 222 -------S--S-----------------NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSER 275 (290)
Q Consensus 222 -------~--~-----------------~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e 275 (290)
+ + +..+...+++.+.++. ...+|.|+++.|+++ ++++||++++.|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~ 363 (483)
T 3mog_A 290 EAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDS 363 (483)
T ss_dssp CCCCCCCCCCGGGCCSCEEECSTTEEEETTEEEEECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHH
T ss_pred CCcccccCCCchhHHHHHHHHhcccccccchhhcccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHH
Confidence 0 0 1122235666676666 345689999999999 799999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy17416 276 VITRTREIMTEIGMK 290 (290)
Q Consensus 276 ~~~~~~~~~~~lgk~ 290 (290)
+++++.+|++.+||+
T Consensus 364 ~~~~~~~~~~~~gk~ 378 (483)
T 3mog_A 364 ATRKAIYYLQQQGKT 378 (483)
T ss_dssp HHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999999984
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=281.29 Aligned_cols=165 Identities=21% Similarity=0.320 Sum_probs=153.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.+||+.++..|++|+++|.+++.++++.+++++.+++.+.++..... .....++++++++++ +++||+|||
T Consensus 324 aG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~-l~~aDlVIE 399 (742)
T 3zwc_A 324 LGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ---ASAKPKLRFSSSTKE-LSTVDLVVE 399 (742)
T ss_dssp CSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC---CCCCCCEEEESCGGG-GGSCSEEEE
T ss_pred ccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch---hhhhhhhcccCcHHH-HhhCCEEEE
Confidence 6999999999999999999999999999999999999999888777665543 234467888888874 899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||+++|||||||++++|++++++++.
T Consensus 400 AV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~ 479 (742)
T 3zwc_A 400 AVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVM 479 (742)
T ss_dssp CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred eccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 480 ~~~~~lgK~ 488 (742)
T 3zwc_A 480 SLSKKIGKI 488 (742)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHhCCC
Confidence 999999995
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=262.13 Aligned_cols=146 Identities=25% Similarity=0.303 Sum_probs=137.1
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|++ ++++||+|||||||++++|+++|++|++.++++|||+||||++|+++|++.+++|+||+|+|||||++.|+++|
T Consensus 122 t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvE 200 (460)
T 3k6j_A 122 TSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVE 200 (460)
T ss_dssp ESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEE
T ss_pred eCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEE
Confidence 35775 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
|++|+.|++++++.+..+++.+||+|+.+ +|+|||++||++..+..++..++...| .++++++++++
T Consensus 201 Iv~g~~Ts~e~~~~~~~l~~~lGk~~v~v-~d~pGfi~Nril~~~~~EA~~l~~~~G-------a~~e~ID~a~~ 267 (460)
T 3k6j_A 201 IIYGSHTSSQAIATAFQACESIKKLPVLV-GNCKSFVFNRLLHVYFDQSQKLMYEYG-------YLPHQIDKIIT 267 (460)
T ss_dssp EECCSSCCHHHHHHHHHHHHHTTCEEEEE-SSCCHHHHHHHHHHHHHHHHHHHHTSC-------CCHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCEEEEE-ecccHHHHHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999988888777665666 68899998875
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=244.09 Aligned_cols=168 Identities=23% Similarity=0.224 Sum_probs=154.2
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.+||..+++.|++|++||++++ ++.+++++.+++++++|.++.. .....+++|+++++++ +++
T Consensus 58 aVIG---aG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~G~l~~~-~~~~~~~~i~~t~dl~-al~ 129 (460)
T 3k6j_A 58 AIIG---GGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSFKRLNDK-RIEKINANLKITSDFH-KLS 129 (460)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHTTSCCHH-HHHHHHTTEEEESCGG-GCT
T ss_pred EEEC---CCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHcCCCCHH-HHHHHhcceEEeCCHH-HHc
Confidence 4555 799999999999999999999999998 6778888899988888776532 2355778899999996 699
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSE 274 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~ 274 (290)
+||+||||+||++++|+.+|++|++.+++++||+||||+++++++++.+.+|+||+|+|||||++.++++||++++.|++
T Consensus 130 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~Ts~ 209 (460)
T 3k6j_A 130 NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSS 209 (460)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSSCCH
T ss_pred cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
++++++.+|++.+||+
T Consensus 210 e~~~~~~~l~~~lGk~ 225 (460)
T 3k6j_A 210 QAIATAFQACESIKKL 225 (460)
T ss_dssp HHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCCE
Confidence 9999999999999984
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=226.71 Aligned_cols=140 Identities=26% Similarity=0.369 Sum_probs=130.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+++ +++||+||||+||+.++|+.+|++++.+ |+||++||||+++++++++.+.+|+|++|+|||||++.++++||
T Consensus 66 ~~~~~-~~~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lvei 142 (293)
T 1zej_A 66 TTLEK-VKDCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEI 142 (293)
T ss_dssp SSCTT-GGGCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEE
T ss_pred CCHHH-HcCCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEE
Confidence 56765 8999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++|+.|++++++.+..+++.+||+|+.+ +|. |++||++..+.++...++.+ | .++++++++++
T Consensus 143 v~g~~t~~~~~~~~~~l~~~lGk~~v~v-~d~--fi~Nrll~~~~~EA~~l~~~-G-------v~~e~id~~~~ 205 (293)
T 1zej_A 143 VISRFTDSKTVAFVEGFLRELGKEVVVC-KGQ--SLVNRFNAAVLSEASRMIEE-G-------VRAEDVDRVWK 205 (293)
T ss_dssp EECTTCCHHHHHHHHHHHHHTTCEEEEE-ESS--CHHHHHHHHHHHHHHHHHHH-T-------CCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCeEEEe-ccc--ccHHHHHHHHHHHHHHHHHh-C-------CCHHHHHHHHH
Confidence 9999999999999999999999999999 587 99999998887776665555 6 58999999886
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=223.90 Aligned_cols=147 Identities=25% Similarity=0.369 Sum_probs=137.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+++++++||+||||++|+++.|+++|+++++.+++++|++||||+++++++++.+.+|+|++|+|||||++.++++|+
T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvev 156 (283)
T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEV 156 (283)
T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEE
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEE
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+++..|++++++.+.++++.+||.|+.++++.|||++||++..+..+...++.+.+ .++++++++++
T Consensus 157 v~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~-------~~~~~id~~~~ 223 (283)
T 4e12_A 157 MGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGI-------ADPETIDKTWR 223 (283)
T ss_dssp EECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTS-------CCHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999997899999999999888777655555544 68999998886
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=219.54 Aligned_cols=152 Identities=31% Similarity=0.418 Sum_probs=138.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||.+||..++ .|++|++||++++.++++.+.+ .++.++++++++++++ +
T Consensus 15 V~vIG---~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l------------------~~~~~~~i~~~~~~~~-~ 71 (293)
T 1zej_A 15 VFVIG---AGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQI------------------PEELLSKIEFTTTLEK-V 71 (293)
T ss_dssp EEEEC---CSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHS------------------CGGGGGGEEEESSCTT-G
T ss_pred EEEEe---eCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHH------------------HHHHhCCeEEeCCHHH-H
Confidence 45666 7999999999999 9999999999999998877730 2344567888888886 8
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|+++++. +++|++||||+++++++++.+.+|.|++|+|||+|++.++++||++++.|+
T Consensus 72 ~~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~ 149 (293)
T 1zej_A 72 KDCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTD 149 (293)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCC
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCC
Confidence 999999999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 150 ~~~~~~~~~l~~~lGk~ 166 (293)
T 1zej_A 150 SKTVAFVEGFLRELGKE 166 (293)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 99999999999999984
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=232.53 Aligned_cols=172 Identities=23% Similarity=0.304 Sum_probs=158.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||.+||..++..|++|++||++++.++++.+++++.+++++++|.++.. .....+++|+.+++++ ++
T Consensus 8 VgVIG---aG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~ 82 (483)
T 3mog_A 8 VAVIG---SGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE-TCERTLKRLIPVTDIH-AL 82 (483)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHH-HHHHHHHTEEEECCGG-GG
T ss_pred EEEEC---cCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhceeEeCCHH-Hh
Confidence 35665 7999999999999999999999999999999999999999888777765532 2345678899999986 68
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|+++++.+++++|++||||+++++++++.+.+|.+++|+|||+|++.++++||++++.|+
T Consensus 83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts 162 (483)
T 3mog_A 83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATA 162 (483)
T ss_dssp GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCC
T ss_pred cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 163 ~e~~~~~~~l~~~lGk~ 179 (483)
T 3mog_A 163 AEVVEQLCELTLSWGKQ 179 (483)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCE
Confidence 99999999999999984
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=243.69 Aligned_cols=144 Identities=26% Similarity=0.375 Sum_probs=133.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+ +++++||+|||||||++++|+++|+++++.+++++|++||||++++++|++.+.+|+|++|+|||||++.|+++||
T Consensus 384 ~d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvev 462 (725)
T 2wtb_A 384 LDY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEI 462 (725)
T ss_dssp SSS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEE
T ss_pred CCH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEE
Confidence 566 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++|+.|++++++.+.++++.+||+|+.+ +|+|||++||++..+..+...++.+ | .+++++++++.
T Consensus 463 v~g~~t~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~Nril~~~~~Ea~~l~~~-G-------~~~e~id~~~~ 527 (725)
T 2wtb_A 463 VRTNHTSAQVIVDLLDVGKKIKKTPVVV-GNCTGFAVNRMFFPYTQAAMFLVEC-G-------ADPYLIDRAIS 527 (725)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEE-ESSTTTTHHHHHHHHHHHHHHHHHT-T-------CCHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhCCEEEEE-CCCccHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHH
Confidence 9999999999999999999999999999 7999999999998888877555554 6 57899888773
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=210.81 Aligned_cols=172 Identities=23% Similarity=0.365 Sum_probs=157.0
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcC-CCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKG-CLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g-~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
|+++ +|.||..+|..++..|++|.+||++++.++++.+.+++.+.++.++| ..... .......+++.++++++++
T Consensus 8 ~VIG---aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 8 TVLG---TGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADG-AAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTT-HHHHHHHHCEEESCHHHHT
T ss_pred EEEC---CCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHH-HHHHHHcCeEEeCCHHHHh
Confidence 4554 79999999999999999999999999999999999999998888776 44332 2345567888889999889
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||+|+|++.+.|+.+++++.+.+++++|++||||++++++++..+.+|.|++|+|||+|++.++++|+++++.|+
T Consensus 84 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t~ 163 (283)
T 4e12_A 84 KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKTD 163 (283)
T ss_dssp TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTSC
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 164 ~~~~~~~~~l~~~~g~~ 180 (283)
T 4e12_A 164 PEVYQQVVEFASAIGMV 180 (283)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 99999999999999984
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=240.92 Aligned_cols=143 Identities=23% Similarity=0.336 Sum_probs=132.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+ +++++||+|||||+|++++|+++|+++++.+++++|++||||++++++|++.+.+|+|++|+|||||++.|+++||
T Consensus 386 ~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvev 464 (715)
T 1wdk_A 386 LSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEV 464 (715)
T ss_dssp SSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEE
T ss_pred CCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEE
Confidence 466 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 154 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~ 154 (290)
++|+.|++++++.+.++++.+||+|+.+ +|+|||++||++..+..+...++. .| .+++.+++++
T Consensus 465 v~g~~t~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~Nril~~~~~Ea~~l~~-~G-------~~~~~id~~~ 528 (715)
T 1wdk_A 465 IRGEKSSDLAVATTVAYAKKMGKNPIVV-NDCPGFLVNRVLFPYFGGFAKLVS-AG-------VDFVRIDKVM 528 (715)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEE-ESCTTTTHHHHHHHHHHHHHHHHH-TT-------CCHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhCCEeEEE-cCCCChhhhHHHHHHHHHHHHHHH-CC-------CCHHHHHHHH
Confidence 9999999999999999999999999999 799999999999888777655554 36 5788888877
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=228.83 Aligned_cols=144 Identities=18% Similarity=0.286 Sum_probs=133.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+ +++++||+|||||||++++|+++|+++++.+++++|++||||++++++|++.+.+|+|++|+|||||++.|+++||
T Consensus 107 ~~~-~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~~lvev 185 (463)
T 1zcj_A 107 SST-KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEV 185 (463)
T ss_dssp SCG-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEE
T ss_pred CCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCCcccceeEEE
Confidence 567 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
++|+.|++++++.+..+++.+||+|+.+ ++.|||++||++..+..+...++. .| .++++++++++
T Consensus 186 v~g~~t~~e~~~~~~~l~~~lGk~~v~v-~~~~gfi~Nrll~~~~~ea~~l~~-~G-------~~~~~id~~~~ 250 (463)
T 1zcj_A 186 IPSRYSSPTTIATVMSLSKKIGKIGVVV-GNCYGFVGNRMLAPYYNQGFFLLE-EG-------SKPEDVDGVLE 250 (463)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEB-CCSTTTTHHHHHHHHHHHHHHHHH-TT-------CCHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCEEEEE-CCCccHHHHHHHHHHHHHHHHHHH-cC-------CCHHHHHHHHH
Confidence 9999999999999999999999999998 799999999998888777655544 46 67899998886
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=236.45 Aligned_cols=167 Identities=25% Similarity=0.381 Sum_probs=151.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..||..++..|++|++||++++.++++.+++++.+++++++|.++.. .....+++|+.+++++ ++++||+|||
T Consensus 320 aG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~d~~-~~~~aDlVIe 397 (725)
T 2wtb_A 320 GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQE-KFEKTMSLLKGSLDYE-SFRDVDMVIE 397 (725)
T ss_dssp CSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTT-HHHHTTTSEEEESSSG-GGTTCSEEEE
T ss_pred CCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHhcceEEeCCHH-HHCCCCEEEE
Confidence 6999999999999999999999999999999999999999888877766542 3445667888888985 7899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||+.++|+.+++++++.+++++|++||||+++++++++.+.+|++|+|+|||+|++.++++||++|+.|++++++++.
T Consensus 398 aVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~ 477 (725)
T 2wtb_A 398 AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLL 477 (725)
T ss_dssp CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 478 ~l~~~lGk~ 486 (725)
T 2wtb_A 478 DVGKKIKKT 486 (725)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHhCCE
Confidence 999999984
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=234.44 Aligned_cols=172 Identities=22% Similarity=0.270 Sum_probs=156.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..||..+++.|++|++||++++.++++.+++++.+++++++|.++.. .....+++++.++++ +++
T Consensus 317 V~VIG---aG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~d~-~~~ 391 (715)
T 1wdk_A 317 AAVLG---AGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPA-KMAEVLNGIRPTLSY-GDF 391 (715)
T ss_dssp EEEEC---CHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHH-HHHHHHHHEEEESSS-TTG
T ss_pred EEEEC---CChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHhcCeEEECCH-HHH
Confidence 34554 7999999999999999999999999999999999999999988887766431 234456788888888 578
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
++||+||||+||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|++|+|+|||+|++.++++||++++.|+
T Consensus 392 ~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~ 471 (715)
T 1wdk_A 392 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS 471 (715)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
+++++++.+|++.+||+
T Consensus 472 ~e~~~~~~~l~~~lGk~ 488 (715)
T 1wdk_A 472 DLAVATTVAYAKKMGKN 488 (715)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCE
Confidence 99999999999999984
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=203.03 Aligned_cols=174 Identities=22% Similarity=0.335 Sum_probs=155.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCC----CChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGS----LSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~----~~~~~~~~~i~~~~~l 189 (290)
-|+++ +|.||..+|..++..|++|++||++++.++++.+.+++.++.++++|.++.. ........+++.++++
T Consensus 18 I~VIG---~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (302)
T 1f0y_A 18 VTVIG---GGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94 (302)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred EEEEC---CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence 34555 7999999999999999999999999999999999999888888888776431 0122345678888999
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecC
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA 269 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~ 269 (290)
++++++||+||+|+|++.++|+.+++++.+.+++++||+|++|+++++++++.+.+|.|++|+||++|++.++++||+++
T Consensus 95 ~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~i~~g 174 (302)
T 1f0y_A 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKT 174 (302)
T ss_dssp HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEECC
T ss_pred HHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCC
Confidence 88899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q psy17416 270 AWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 270 ~~t~~e~~~~~~~~~~~lgk~ 290 (290)
+.+++++++++.+|++.+||+
T Consensus 175 ~~~~~e~~~~~~~l~~~~G~~ 195 (302)
T 1f0y_A 175 PMTSQKTFESLVDFSKALGKH 195 (302)
T ss_dssp TTCCHHHHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999973
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=216.77 Aligned_cols=165 Identities=20% Similarity=0.313 Sum_probs=146.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..++..|++|++||++++.++++.+.+++.+.+++++|.++.. .......++ +++++ ++++||+|||
T Consensus 45 aG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~i--~~~~~-~~~~aDlVIe 120 (463)
T 1zcj_A 45 LGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ-ASAKPKLRF--SSSTK-ELSTVDLVVE 120 (463)
T ss_dssp CSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCEEE--ESCGG-GGTTCSEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhhh--cCCHH-HHCCCCEEEE
Confidence 7999999999999999999999999999999999998888877776654332 111112233 56774 6899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||+.++|+.+++++.+.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++||++|+.|++++++++.
T Consensus 121 aVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~ 200 (463)
T 1zcj_A 121 AVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVM 200 (463)
T ss_dssp CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 201 ~l~~~lGk~ 209 (463)
T 1zcj_A 201 SLSKKIGKI 209 (463)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHhCCE
Confidence 999999984
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=206.40 Aligned_cols=146 Identities=22% Similarity=0.363 Sum_probs=136.4
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeE
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEI 81 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEi 81 (290)
+|+++++++||+||+||||+.++|+++|+++.+.+++++|++||||+++++++++.+.+|+|++|+||++|++.++++||
T Consensus 92 ~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~i 171 (302)
T 1f0y_A 92 TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEV 171 (302)
T ss_dssp SCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEE
T ss_pred cCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEE
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 82 VPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 82 v~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+.|+.|++++++.+.++++.+|+.++.+ ++.|||+.||++..+..+.+.++.+.| .++++++.++.
T Consensus 172 ~~g~~~~~e~~~~~~~l~~~~G~~~v~~-~~~~g~i~nr~l~~~~~Ea~~l~~~g~-------~~~~~id~~~~ 237 (302)
T 1f0y_A 172 IKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRLLVPYLMEAIRLYERGD-------ASKEDIDTAMK 237 (302)
T ss_dssp ECCTTCCHHHHHHHHHHHHHTTCEEEEE-CSCTTTTHHHHHHHHHHHHHHHHHTTS-------SCHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceEEe-cCcccccHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHH
Confidence 9999999999999999999999999998 799999999999888888777777655 57888888775
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=134.95 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=126.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc---eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY---KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~---~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
-||++ .|.||..++..+.+.|+ +|.+||++++.+++..+. -++..+++..
T Consensus 6 I~iIG---~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~------------------------~gi~~~~~~~ 58 (280)
T 3tri_A 6 ITFIG---GGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK------------------------CGVHTTQDNR 58 (280)
T ss_dssp EEEES---CSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT------------------------TCCEEESCHH
T ss_pred EEEEc---ccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH------------------------cCCEEeCChH
Confidence 46666 79999999999999998 999999999987765541 0233456777
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhh-CCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEE-Eec
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVP 268 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvE-vv~ 268 (290)
++++++|+||+|+|. ..+.++++++.+. ++++++|+|.+++++++.++..+..+.++++.||..|......+. +++
T Consensus 59 ~~~~~aDvVilav~p--~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~ 136 (280)
T 3tri_A 59 QGALNADVVVLAVKP--HQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFA 136 (280)
T ss_dssp HHHSSCSEEEECSCG--GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEEC
T ss_pred HHHhcCCeEEEEeCH--HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEe
Confidence 789999999999985 4488999999998 899989999999999999999888888999999999988887665 678
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
++.++++.++.+.++++.+|+
T Consensus 137 ~~~~~~~~~~~v~~l~~~iG~ 157 (280)
T 3tri_A 137 NETVDKDQKNLAESIMRAVGL 157 (280)
T ss_dssp CTTSCHHHHHHHHHHHGGGEE
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999999999986
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=130.54 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=118.1
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.||.++|..+...|+ +|.+||++++.++++.+ .|..+ ..++++++
T Consensus 36 I~IIG---~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~-----------~G~~~------------~~~~~~~~ 89 (314)
T 3ggo_A 36 VLIVG---VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID------------EGTTSIAK 89 (314)
T ss_dssp EEEES---CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS------------EEESCTTG
T ss_pred EEEEe---eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-----------CCCcc------------hhcCCHHH
Confidence 45665 79999999999999999 99999999988776554 33321 13467777
Q ss_pred -hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCCCCcEEEeccCCCCC---------
Q psy17416 192 -CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPY--------- 259 (290)
Q Consensus 192 -~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~~~r~ig~Hf~~p~~--------- 259 (290)
++++||+||.|+|.+. ..++++++.+.++++++|++.+|... +..+.+.++ .+|++.||+.++.
T Consensus 90 ~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~ 165 (314)
T 3ggo_A 90 VEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLD 165 (314)
T ss_dssp GGGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCT
T ss_pred HhhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhh
Confidence 7899999999999775 67899999999999999986555443 455555443 3999999988753
Q ss_pred ---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 260 ---FIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 260 ---~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
..+++.+++++.++++.++++.++++.+|++
T Consensus 166 ~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~ 199 (314)
T 3ggo_A 166 NLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGV 199 (314)
T ss_dssp TTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCE
T ss_pred hhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCE
Confidence 3578999999999999999999999999973
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=126.53 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=123.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc----eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~----~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
-||++ .|.||..++..+.+.|+ +|.+||++++.+++..+. . ++..+.++
T Consensus 5 i~iIG---~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~----------~--------------g~~~~~~~ 57 (247)
T 3gt0_A 5 IGFIG---CGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEK----------Y--------------GLTTTTDN 57 (247)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHH----------H--------------CCEECSCH
T ss_pred EEEEC---ccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHH----------h--------------CCEEeCCh
Confidence 35666 79999999999999998 999999999887665431 0 12345778
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEec
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVP 268 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~ 268 (290)
.++++++|+||.|+|.+ ...++++++.+.++++++++|.+++++++.+...+..+.++++.||..|....+ ..++++
T Consensus 58 ~e~~~~aDvVilav~~~--~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~ 135 (247)
T 3gt0_A 58 NEVAKNADILILSIKPD--LYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCP 135 (247)
T ss_dssp HHHHHHCSEEEECSCTT--THHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEE
T ss_pred HHHHHhCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEe
Confidence 88889999999999854 478999999999999999999999999999988877778999999999988777 889999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
++.++++.++++.++++.+|+
T Consensus 136 ~~~~~~~~~~~~~~l~~~~G~ 156 (247)
T 3gt0_A 136 NEMVTEKDLEDVLNIFNSFGQ 156 (247)
T ss_dssp CTTCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999986
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=119.40 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=108.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||.++|..+...|++|.+||++++.++.+.+ .|. ..++++++++
T Consensus 11 IgIIG---~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~G~--------------~~~~~~~e~~ 62 (341)
T 3ktd_A 11 VCILG---LGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD-----------EGF--------------DVSADLEATL 62 (341)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH-----------TTC--------------CEESCHHHHH
T ss_pred EEEEe---ecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC--------------eeeCCHHHHH
Confidence 46666 7999999999999999999999999998776654 222 2245666655
Q ss_pred c----cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC---HHHHhccCCCCCcEEEeccCCCCC-------
Q psy17416 194 E----DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPPY------- 259 (290)
Q Consensus 194 ~----~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~la~~~~~~~r~ig~Hf~~p~~------- 259 (290)
+ +||+||.|+|. .....+++++.+. +++++|+ +.+|.+ +..+..... ..+|++.||+..+.
T Consensus 63 ~~a~~~aDlVilavP~--~~~~~vl~~l~~~-~~~~iv~-Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa 137 (341)
T 3ktd_A 63 QRAAAEDALIVLAVPM--TAIDSLLDAVHTH-APNNGFT-DVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSAS 137 (341)
T ss_dssp HHHHHTTCEEEECSCH--HHHHHHHHHHHHH-CTTCCEE-ECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGC
T ss_pred HhcccCCCEEEEeCCH--HHHHHHHHHHHcc-CCCCEEE-EcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhh
Confidence 5 47999999994 4577899999887 8888875 333333 345554443 46999999987653
Q ss_pred -----CCCeEEEecCCCCCHH--------HHHHHHHHHHHcCC
Q psy17416 260 -----FIPLVEIVPAAWTSER--------VITRTREIMTEIGM 289 (290)
Q Consensus 260 -----~~~lvEvv~~~~t~~e--------~~~~~~~~~~~lgk 289 (290)
....+-+++++.++++ .++++.++|+.+|.
T Consensus 138 ~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga 180 (341)
T 3ktd_A 138 MDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGA 180 (341)
T ss_dssp CSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCC
Confidence 2335779999999988 99999999999995
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=115.24 Aligned_cols=125 Identities=9% Similarity=0.019 Sum_probs=101.1
Q ss_pred CcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccCC-CCce
Q psy17416 2 PVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHSTH-RSQF 64 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~~-~~r~ 64 (290)
+|+ +++++||+||+|+ +|+.++|++++++++++++ ++++ +||++++....++....+ |+|+
T Consensus 65 ~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rv 142 (317)
T 2ewd_A 65 DDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKV 142 (317)
T ss_dssp SCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGE
T ss_pred CCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHE
Confidence 677 7899999999999 8999999999999999975 8977 999999999999888877 8999
Q ss_pred eeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEec---ccchhHHHH-------HHHHH
Q psy17416 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR---IHGLIGQAW-------AMIFA 134 (290)
Q Consensus 65 ~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nr---i~G~~g~~i-------a~~~~ 134 (290)
+|+ .|+.++.+....+++.+|+. + ++.+||++|| ....+.++. ... .
T Consensus 143 iG~------------------~t~ld~~r~~~~la~~lg~~---~-~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~-~ 199 (317)
T 2ewd_A 143 CGM------------------AGVLDSSRFRTFIAQHFGVN---A-SDVSANVIGGHGDGMVPATSSVSVGGVPLSSF-I 199 (317)
T ss_dssp EES------------------CHHHHHHHHHHHHHHHHTSC---G-GGEECCEEBCSSTTCEECGGGCEETTEEHHHH-H
T ss_pred Eec------------------cCcHHHHHHHHHHHHHhCcC---h-hhceEEEEecCCCceeEEeeccccCCEEHHHH-H
Confidence 987 48899999999999999985 3 7999999999 544443332 222 2
Q ss_pred HcCceeEEecCCHHHHHHHHHHH
Q psy17416 135 SAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 135 ~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
..|+ .+++.++++.+..
T Consensus 200 ~~g~------~~~~~id~~~~~~ 216 (317)
T 2ewd_A 200 KQGL------ITQEQIDEIVCHT 216 (317)
T ss_dssp HTTS------SCHHHHHHHHHHH
T ss_pred hccC------CCHHHHHHHHHHH
Confidence 3342 4677777776654
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=109.54 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=108.8
Q ss_pred eeEEeccc-chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIH-GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~-G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
|+++ + |.||..++..+...|++|.+||++++.++++.+ .| +..+ ++.+++
T Consensus 15 ~iIG---~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g--------------~~~~-~~~~~~ 65 (286)
T 3c24_A 15 AILG---AGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG--------------IPLT-DGDGWI 65 (286)
T ss_dssp EEET---TTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT--------------CCCC-CSSGGG
T ss_pred EEEC---CCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC--------------CCcC-CHHHHh
Confidence 4554 6 999999999999999999999999987765433 12 1112 445578
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCC--------CCC---
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY--------FIP--- 262 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~--------~~~--- 262 (290)
++||+||.|+|.+. ..++++++.+.+++++++++.+++.+++.+.+ .....+|++.||..|.. ..+
T Consensus 66 ~~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l 142 (286)
T 3c24_A 66 DEADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYH 142 (286)
T ss_dssp GTCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSS
T ss_pred cCCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCcc
Confidence 89999999999776 67899999999999999998777776666654 33336899999988765 222
Q ss_pred -----eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 -----LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 -----lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
...++.+..++++.++++.++++.+|+
T Consensus 143 ~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~ 174 (286)
T 3c24_A 143 GGIAKQAIVCALMQGPEEHYAIGADICETMWS 174 (286)
T ss_dssp SSSSCEEEEEEEEESCTHHHHHHHHHHHHHTC
T ss_pred cccccceeeeeccCCCHHHHHHHHHHHHHhcC
Confidence 234444445789999999999999996
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=107.59 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=111.7
Q ss_pred eeeEEecccchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.||..++..+... |++|.+||++++.++.+.+ .|... ..++++++
T Consensus 9 I~iIG---~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-----------~g~~~------------~~~~~~~~ 62 (290)
T 3b1f_A 9 IYIAG---LGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE-----------RGIVD------------EATADFKV 62 (290)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-----------TTSCS------------EEESCTTT
T ss_pred EEEEe---eCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH-----------cCCcc------------cccCCHHH
Confidence 35665 799999999999887 6899999999987765433 22210 13456667
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhh-CCCCcEEEeCCCCc--CHHHHhccCCC-CCcEEEeccC------CCCC--
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSSTSSF--LPSVLSEHSTH-RSQFIVAHPV------NPPY-- 259 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~--~~~~la~~~~~-~~r~ig~Hf~------~p~~-- 259 (290)
+++++|+||.|+|.+. -.++++++.+. +++++++++.++.. ....+.+.+.. ..|+++.||+ .|..
T Consensus 63 ~~~~aDvVilavp~~~--~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~ 140 (290)
T 3b1f_A 63 FAALADVIILAVPIKK--TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAAN 140 (290)
T ss_dssp TGGGCSEEEECSCHHH--HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCC
T ss_pred hhcCCCEEEEcCCHHH--HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhh
Confidence 7889999999999766 47889999988 89999887433322 22556655554 6789999998 4443
Q ss_pred ----CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 260 ----FIPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 260 ----~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
....+.++++..++++.++.+.++++.+|+
T Consensus 141 ~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~ 174 (290)
T 3b1f_A 141 VNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHA 174 (290)
T ss_dssp TTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCC
T ss_pred HHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 346788999998999999999999999986
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=106.96 Aligned_cols=143 Identities=14% Similarity=0.080 Sum_probs=107.4
Q ss_pred eeEEecccchhHHHHHHHHHHcCce-eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~-V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
|+++ +|.||..++..+...|++ |.+||++++.+++..+.+ ++..++++++++
T Consensus 14 ~iiG---~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~------------------------g~~~~~~~~~~~ 66 (266)
T 3d1l_A 14 VLIG---AGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV------------------------EAEYTTDLAEVN 66 (266)
T ss_dssp EEEC---CSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT------------------------TCEEESCGGGSC
T ss_pred EEEc---CCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc------------------------CCceeCCHHHHh
Confidence 4555 799999999999999998 899999998776544310 123356777778
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCC-----CCCCeEEEec
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP-----YFIPLVEIVP 268 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~-----~~~~lvEvv~ 268 (290)
+++|+||+|+|++. -.++++++.+.+++++++++.+++++.+.++..+..+ -..|+++|. ..++.++++-
T Consensus 67 ~~~Dvvi~av~~~~--~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~v 141 (266)
T 3d1l_A 67 PYAKLYIVSLKDSA--FAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHY---GVFYPMQTFSKQREVDFKEIPFFI 141 (266)
T ss_dssp SCCSEEEECCCHHH--HHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSE---EEEEECCCC---CCCCCTTCCEEE
T ss_pred cCCCEEEEecCHHH--HHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhc---cCcCCceecCCCchhhcCCCeEEE
Confidence 89999999999884 3788899999999999999999999988776655432 235666642 2233333332
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q psy17416 269 AAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
..++++.++.+.++++.+|++
T Consensus 142 -~~~~~~~~~~~~~l~~~~g~~ 162 (266)
T 3d1l_A 142 -EASSTEDAAFLKAIASTLSNR 162 (266)
T ss_dssp -EESSHHHHHHHHHHHHTTCSC
T ss_pred -ecCCHHHHHHHHHHHHhcCCc
Confidence 356899999999999999963
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-11 Score=108.23 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=113.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcC----ceeEEecCCHH--HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG----YKVSLYDVLSE--QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP 187 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G----~~V~l~d~~~e--~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~ 187 (290)
-|||+ +|.||..++..+.+.| ++|.+||++++ .+++..+ .| +..++
T Consensus 25 I~iIG---~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~-----------~G--------------~~~~~ 76 (322)
T 2izz_A 25 VGFIG---AGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK-----------MG--------------VKLTP 76 (322)
T ss_dssp EEEES---CSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH-----------HT--------------CEEES
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH-----------cC--------------CEEeC
Confidence 56776 7999999999999999 89999999985 5444321 11 23345
Q ss_pred chHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCC---CCcEEEeccCCCCCCCCeE
Q psy17416 188 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH---RSQFIVAHPVNPPYFIPLV 264 (290)
Q Consensus 188 ~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~---~~r~ig~Hf~~p~~~~~lv 264 (290)
+..+++++||+||.|+|.. ...+++.++.+.++++++|++.+++++...+.+.+.. ..++++.|+..|.....-.
T Consensus 77 ~~~e~~~~aDvVilav~~~--~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~ 154 (322)
T 2izz_A 77 HNKETVQHSDVLFLAVKPH--IIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGA 154 (322)
T ss_dssp CHHHHHHHCSEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEE
T ss_pred ChHHHhccCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCe
Confidence 6777888999999999954 4778899999999999999988888888777655432 3589999997777655433
Q ss_pred E-EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 E-IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 E-vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
. +++++.++++.++++.++++.+|+
T Consensus 155 ~v~~~g~~~~~~~~~~v~~ll~~~G~ 180 (322)
T 2izz_A 155 TVYATGTHAQVEDGRLMEQLLSSVGF 180 (322)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCC
Confidence 3 457888889999999999999885
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-10 Score=102.44 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=108.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..++..+...|++|.++|++++.++.+.+ .|... ..+++++++ .
T Consensus 4 ~iiG---~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g~~~------------~~~~~~~~~-~ 56 (279)
T 2f1k_A 4 GVVG---LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLVD------------EAGQDLSLL-Q 56 (279)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSCS------------EEESCGGGG-T
T ss_pred EEEc---CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-----------CCCCc------------cccCCHHHh-C
Confidence 4555 7999999999999999999999999987765432 22210 124567777 8
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCC------------CCCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP------------YFIP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~------------~~~~ 262 (290)
++|+||.|+|.+ ...++++++.+.+++++++++. ++.+...+........|+++.||+... ...+
T Consensus 57 ~~D~vi~av~~~--~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~ 133 (279)
T 2f1k_A 57 TAKIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNA 133 (279)
T ss_dssp TCSEEEECSCHH--HHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTC
T ss_pred CCCEEEEECCHH--HHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCC
Confidence 999999999965 4778999999999999988754 555544333222212389999987622 1334
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.+.++++..++++..+.+.++++.+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~v~~l~~~~g~ 160 (279)
T 2f1k_A 134 PYVLTPTEYTDPEQLACLRSVLEPLGV 160 (279)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHGGGTC
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 788999888999999999999999985
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=112.06 Aligned_cols=135 Identities=14% Similarity=0.106 Sum_probs=105.1
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..+|..++..|+ +|.+||++++.++.....+..... . .....++..++++ +++++||+||
T Consensus 12 aG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~---~----------~~~~~~i~~t~d~-~a~~~aDiVi 77 (317)
T 2ewd_A 12 SGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV---M----------FGSTSKVIGTDDY-ADISGSDVVI 77 (317)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH---H----------HTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh---h----------cCCCcEEEECCCH-HHhCCCCEEE
Confidence 69999999999999998 999999998877653211111100 0 0012345666788 5789999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCcEE--EeCCCCcCHHHHhccCCC-CCcEEEeccCCCCCCCCe
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHSTH-RSQFIVAHPVNPPYFIPL 263 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~la~~~~~-~~r~ig~Hf~~p~~~~~l 263 (290)
+|+ +++..+++++++++.++++ ++++ +||++++....+++...+ |.|++|+
T Consensus 78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~----------- 145 (317)
T 2ewd_A 78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM----------- 145 (317)
T ss_dssp ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES-----------
T ss_pred EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec-----------
Confidence 999 8999999999999999975 7776 588888887788777766 6788876
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.|+.++......+++.+|+
T Consensus 146 -------~t~ld~~r~~~~la~~lg~ 164 (317)
T 2ewd_A 146 -------AGVLDSSRFRTFIAQHFGV 164 (317)
T ss_dssp -------CHHHHHHHHHHHHHHHHTS
T ss_pred -------cCcHHHHHHHHHHHHHhCc
Confidence 4788898889999999987
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=104.51 Aligned_cols=141 Identities=18% Similarity=0.141 Sum_probs=107.6
Q ss_pred eeEEecccchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
|+++ +|.||..++..+...| ++|.+||++++.+++..+. .| +..++++.+++
T Consensus 4 ~iiG---~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g--------------~~~~~~~~~~~ 56 (263)
T 1yqg_A 4 YFLG---GGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG--------------VETSATLPELH 56 (263)
T ss_dssp EEEC---CSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC--------------CEEESSCCCCC
T ss_pred EEEC---chHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC--------------CEEeCCHHHHh
Confidence 4555 7999999999999999 9999999999877654431 01 22345666677
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCC-CCCCCC-eEEEecCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN-PPYFIP-LVEIVPAAW 271 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~-p~~~~~-lvEvv~~~~ 271 (290)
++|+||.|+| .....++++++.+ + ++++++.+++++++.+.+.+....+++.. +.+ |....+ ...++++..
T Consensus 57 -~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~-~~~~~~~~~~g~~~i~~~~~ 129 (263)
T 1yqg_A 57 -SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRV-MPNTPGKIGLGVSGMYAEAE 129 (263)
T ss_dssp -TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEE-ECCGGGGGTCEEEEEECCTT
T ss_pred -cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEE-cCCHHHHHcCceEEEEcCCC
Confidence 9999999999 3345677776655 5 88998888999998888877665688888 444 333332 567888888
Q ss_pred CCHHHHHHHHHHHHHcCC
Q psy17416 272 TSERVITRTREIMTEIGM 289 (290)
Q Consensus 272 t~~e~~~~~~~~~~~lgk 289 (290)
++++.++++.++++.+|+
T Consensus 130 ~~~~~~~~~~~l~~~~g~ 147 (263)
T 1yqg_A 130 VSETDRRIADRIMKSVGL 147 (263)
T ss_dssp SCHHHHHHHHHHHHTTEE
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 899999999999999875
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-11 Score=103.57 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=108.2
Q ss_pred eeEEecccchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||..++..+...|+ +|.+||++++.++.+.+ .|... ..+++++++
T Consensus 5 ~iIG---~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-----------~g~~~------------~~~~~~~~~ 58 (281)
T 2g5c_A 5 LIVG---VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID------------EGTTSIAKV 58 (281)
T ss_dssp EEES---CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS------------EEESCGGGG
T ss_pred EEEe---cCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-----------CCCcc------------cccCCHHHH
Confidence 4555 79999999999999998 99999999987765433 22211 124567677
Q ss_pred cc-cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCC--CCcCHHHHhccCCCCCcEEEeccCCCCC----------
Q psy17416 193 LE-DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPY---------- 259 (290)
Q Consensus 193 l~-~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t--s~~~~~~la~~~~~~~r~ig~Hf~~p~~---------- 259 (290)
++ ++|+||.|+|.+. -.+++.++.+.++++++|+..+ +......+.+.+. .++++.||+..+.
T Consensus 59 ~~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~--~~~v~~~p~~~~~~~gp~~a~~~ 134 (281)
T 2g5c_A 59 EDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLDN 134 (281)
T ss_dssp GGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEEECCCSCCSGGGCCSS
T ss_pred hcCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcc--ccceeeccccCCccCChhhhhhH
Confidence 88 9999999999764 5588888988899999887433 3222344554443 2489999866432
Q ss_pred --CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 260 --FIPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 260 --~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
....+.++++..++++.++.+.++++.+|+
T Consensus 135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~ 166 (281)
T 2g5c_A 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGG 166 (281)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTC
T ss_pred HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 455788999989999999999999999986
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=110.82 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=98.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCc-eeEEecCC--HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGY-KVSLYDVL--SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~-~V~l~d~~--~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
-||++ +|.||..+|..+.+.|+ +|.+||++ ++..+.+.+ . ++..++++.
T Consensus 27 I~iIG---~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~-----------~--------------g~~~~~~~~ 78 (312)
T 3qsg_A 27 LGFIG---FGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEE-----------L--------------GVSCKASVA 78 (312)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH-----------T--------------TCEECSCHH
T ss_pred EEEEC---ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH-----------C--------------CCEEeCCHH
Confidence 46666 79999999999999999 99999997 454443322 1 233467888
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCCCCcEEEeccCCCCCC-------C
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPPYF-------I 261 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~~~r~ig~Hf~~p~~~-------~ 261 (290)
+++++||+||.|+|.+... ++++++.+.++++++++..+|..+.+ .++..+. ++++|.||++.|.. .
T Consensus 79 e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~--~~~~g~~~vd~pv~g~~~~~~g 154 (312)
T 3qsg_A 79 EVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVIS--RHRPSAQYAAVAVMSAVKPHGH 154 (312)
T ss_dssp HHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHH--HHCTTCEEEEEEECSCSTTTGG
T ss_pred HHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHH--hhcCCCeEEeccccCCchhhcC
Confidence 8899999999999998865 57789999999999888555444332 3333221 12223444333222 2
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.+..+++++.+ +++.++++.+|++
T Consensus 155 ~l~i~vgg~~~-----~~~~~ll~~~g~~ 178 (312)
T 3qsg_A 155 RVPLVVDGDGA-----RRFQAAFTLYGCR 178 (312)
T ss_dssp GSEEEEESTTH-----HHHHHHHHTTTCE
T ss_pred CEEEEecCChH-----HHHHHHHHHhCCC
Confidence 67888888654 7889999999873
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=99.72 Aligned_cols=142 Identities=10% Similarity=0.093 Sum_probs=108.8
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..++..+...|++|.+||++++..++..+. .| +..+++++++++
T Consensus 7 ~iiG---~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~----------~g--------------~~~~~~~~~~~~ 59 (259)
T 2ahr_A 7 GIIG---VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA--------------LPYAMSHQDLID 59 (259)
T ss_dssp EEEC---CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT--------------CCBCSSHHHHHH
T ss_pred EEEC---CCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHH----------cC--------------CEeeCCHHHHHh
Confidence 4555 79999999999999999999999999877654431 01 223567777888
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEecCCCCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTS 273 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~~~~t~ 273 (290)
++|+||.|+|... ..+++.++ .+++++++.+++++.+.+.+......+++..|+..|....+ ...++++..++
T Consensus 60 ~~D~Vi~~v~~~~--~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~ 133 (259)
T 2ahr_A 60 QVDLVILGIKPQL--FETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS 133 (259)
T ss_dssp TCSEEEECSCGGG--HHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred cCCEEEEEeCcHh--HHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence 9999999999443 45555543 47788888888899888887776555788777766655544 66788888899
Q ss_pred HHHHHHHHHHHHHcCC
Q psy17416 274 ERVITRTREIMTEIGM 289 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk 289 (290)
++.++++.++++.+|+
T Consensus 134 ~~~~~~~~~ll~~~G~ 149 (259)
T 2ahr_A 134 QELQARVRDLTDSFGS 149 (259)
T ss_dssp HHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999874
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-11 Score=106.27 Aligned_cols=140 Identities=15% Similarity=0.260 Sum_probs=104.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..+|..+.+.||+|++||++++..+...+ . ..+...++.+++
T Consensus 6 IgfIG---lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~--------------Ga~~a~s~~e~~ 57 (300)
T 3obb_A 6 IAFIG---LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------A--------------GASAARSARDAV 57 (300)
T ss_dssp EEEEC---CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------T--------------TCEECSSHHHHH
T ss_pred EEEee---ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------c--------------CCEEcCCHHHHH
Confidence 47887 8999999999999999999999999988776554 2 223467889999
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCC--------
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF-------- 260 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~-------- 260 (290)
++||+||.|+|.+..++.-++. .+.+.++++.+++ ++|+.+++ ++++.+... |.||...|..
T Consensus 58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiI-d~sT~~p~~~~~~a~~~~~~----G~~~lDaPVsGg~~~A~~ 132 (300)
T 3obb_A 58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVL-ECSTIAPTSARKIHAAARER----GLAMLDAPVSGGTAGAAA 132 (300)
T ss_dssp TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEE-ECSCCCHHHHHHHHHHHHTT----TCEEEECCEESCHHHHHH
T ss_pred hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCEEEecCCCCCHHHHHh
Confidence 9999999999998887666554 2677788888886 33333333 555555433 6677665522
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..|.-++.| +++++++++.+++.+|+
T Consensus 133 G~L~imvGG---~~~~~~~~~p~l~~~g~ 158 (300)
T 3obb_A 133 GTLTFMVGG---DAEALEKARPLFEAMGR 158 (300)
T ss_dssp TCEEEEEES---CHHHHHHHHHHHHHHEE
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHhCC
Confidence 236667777 89999999999999986
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-11 Score=105.65 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=100.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~~ 192 (290)
-|+++ +|.||..+|..+++.|++|.+||++++.+++..+ .|. .. +++++++
T Consensus 10 I~iIG---~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~--------------~~~~~~~~e~ 61 (303)
T 3g0o_A 10 VGIVG---LGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-----------EGA--------------CGAAASAREF 61 (303)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC--------------SEEESSSTTT
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cCC--------------ccccCCHHHH
Confidence 35665 8999999999999999999999999988776554 221 12 5677788
Q ss_pred cccCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCCC-CCcEEEeccCCC-C---CCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVNP-P---YFIP 262 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~-~~r~ig~Hf~~p-~---~~~~ 262 (290)
+++||+||.|+|++..++..++ +++.+.++++++++.. |+..+. .+++.+.. ..+|+. ||... + ....
T Consensus 62 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~ 139 (303)
T 3g0o_A 62 AGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVS-STISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGE 139 (303)
T ss_dssp TTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEEC-SCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTC
T ss_pred HhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEec-CCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCC
Confidence 8999999999998876665554 6688889999988743 333332 34433322 234554 44221 1 1123
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++.++++ +++.++++.++++.+|+
T Consensus 140 l~~~~gg---~~~~~~~~~~ll~~~g~ 163 (303)
T 3g0o_A 140 MTVMASG---SEAAFTRLKPVLDAVAS 163 (303)
T ss_dssp EEEEEEC---CHHHHHHHHHHHHHHEE
T ss_pred eEEEeCC---CHHHHHHHHHHHHHHCC
Confidence 5666665 78999999999999986
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-11 Score=105.69 Aligned_cols=142 Identities=14% Similarity=0.161 Sum_probs=102.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..++..+.+.|++|.+||++++..++..+ . ++..+++++++++
T Consensus 5 ~iIG---~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~--------------g~~~~~~~~~~~~ 56 (287)
T 3pef_A 5 GFIG---LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------L--------------GAERAATPCEVVE 56 (287)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T--------------TCEECSSHHHHHH
T ss_pred EEEe---ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C--------------CCeecCCHHHHHh
Confidence 5665 7999999999999999999999999987766544 1 2345678888899
Q ss_pred cCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCC-CCCcEEEeccCCCCC----CCCeE
Q psy17416 195 DAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPY----FIPLV 264 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~-~~~r~ig~Hf~~p~~----~~~lv 264 (290)
+||+||.|+|++..++..++ +++.+.++++++++.. |+..+. .++..+. ...+|+. ||..... ...++
T Consensus 57 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~ 134 (287)
T 3pef_A 57 SCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLI 134 (287)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEE
T ss_pred cCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEE
Confidence 99999999998777766555 7788889999888644 444433 3333332 2234554 4422211 12456
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.++.+ ++++++++.++++.+|+
T Consensus 135 ~~~gg---~~~~~~~~~~ll~~~g~ 156 (287)
T 3pef_A 135 ILAAG---DRNLYDEAMPGFEKMGK 156 (287)
T ss_dssp EEEEE---CHHHHHHHHHHHHHHEE
T ss_pred EEEeC---CHHHHHHHHHHHHHhCC
Confidence 67766 78999999999999986
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.7e-11 Score=104.28 Aligned_cols=105 Identities=11% Similarity=0.098 Sum_probs=94.5
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhh-cCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~-~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
+|+.++++++|+||.|++ ...+.+++++|... +++++++.|++++++++.|.+.+.++.|++++||.+|+.....++
T Consensus 55 ~~~~~~~~~aDvVilav~--p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~ 132 (280)
T 3tri_A 55 QDNRQGALNADVVVLAVK--PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGAT 132 (280)
T ss_dssp SCHHHHHSSCSEEEECSC--GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEE
T ss_pred CChHHHHhcCCeEEEEeC--HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccE
Confidence 578889999999999996 47789999999998 899999999999999999999998889999999999999887666
Q ss_pred -EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 -IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 -iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+..++.++++.++.+..++..+|+ .+.+
T Consensus 133 ~l~~~~~~~~~~~~~v~~l~~~iG~-~~~v 161 (280)
T 3tri_A 133 GLFANETVDKDQKNLAESIMRAVGL-VIWV 161 (280)
T ss_dssp EEECCTTSCHHHHHHHHHHHGGGEE-EEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCC-eEEE
Confidence 466888999999999999999998 4444
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.5e-11 Score=104.76 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=101.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+++.|++|.+||++++.++++.+ . +++.++++++++
T Consensus 18 I~vIG---~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~--------------g~~~~~~~~~~~ 69 (296)
T 3qha_A 18 LGYIG---LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------A--------------GATLADSVADVA 69 (296)
T ss_dssp EEEEC---CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------T--------------TCEECSSHHHHT
T ss_pred EEEEC---cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C--------------CCEEcCCHHHHH
Confidence 46666 7999999999999999999999999987765544 1 234578899888
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEeccCCCC---CCCCeEEEe
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVAHPVNPP---YFIPLVEIV 267 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~Hf~~p~---~~~~lvEvv 267 (290)
+ ||+||.|+|++..++ .+++++.+.++++++++..++..+.+ ++++.+.. ..+|+....+.++ ....+..++
T Consensus 70 ~-aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~ 147 (296)
T 3qha_A 70 A-ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMV 147 (296)
T ss_dssp T-SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEE
T ss_pred h-CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEe
Confidence 8 999999999877654 45588999999999887443333222 34443322 2334433222221 123467777
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 268 PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 268 ~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.+ +++.++++.++++.+|+
T Consensus 148 gg---~~~~~~~~~~ll~~~g~ 166 (296)
T 3qha_A 148 GA---DREVYERIKPAFKHWAA 166 (296)
T ss_dssp EC---CHHHHHHHHHHHHHHEE
T ss_pred cC---CHHHHHHHHHHHHHHcC
Confidence 76 78999999999999986
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=104.72 Aligned_cols=143 Identities=13% Similarity=0.175 Sum_probs=100.6
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..++..|++|.+||++++.+++..+ . ++..++++++++
T Consensus 24 I~iIG---~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~--------------g~~~~~~~~~~~ 75 (310)
T 3doj_A 24 VGFLG---LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------H--------------GASVCESPAEVI 75 (310)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T--------------TCEECSSHHHHH
T ss_pred EEEEC---ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C--------------CCeEcCCHHHHH
Confidence 36666 7999999999999999999999999987765543 1 133467888889
Q ss_pred ccCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCC-CCCcEEEeccCCCC----CCCCe
Q psy17416 194 EDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPP----YFIPL 263 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~-~~~r~ig~Hf~~p~----~~~~l 263 (290)
++||+||.|+|.+..++..++ +++.+.++++++++..+ +..+. .++..+. ...+|+. ||.... ...++
T Consensus 76 ~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l 153 (310)
T 3doj_A 76 KKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQL 153 (310)
T ss_dssp HHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCE
T ss_pred HhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCe
Confidence 999999999998877765544 67888888998887433 33333 3333332 2233444 332111 11345
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..++++ ++++++++.++++.+|+
T Consensus 154 ~i~~gg---~~~~~~~~~~ll~~~g~ 176 (310)
T 3doj_A 154 IILAAG---DKALFEESIPAFDVLGK 176 (310)
T ss_dssp EEEEEE---CHHHHHHHHHHHHHHEE
T ss_pred EEEEcC---CHHHHHHHHHHHHHhCC
Confidence 667766 68999999999999986
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-10 Score=102.31 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=104.7
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHH-HHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~-l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
|+++ +|.||.++|..+...|++|.++|++++. .+.+.+ .| +..+ ++++++
T Consensus 20 ~IIG---~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~-----------~G--------------~~~~-~~~e~~ 70 (338)
T 1np3_A 20 AIIG---YGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEA-----------HG--------------LKVA-DVKTAV 70 (338)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH-----------TT--------------CEEE-CHHHHH
T ss_pred EEEC---chHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHH-----------CC--------------CEEc-cHHHHH
Confidence 4554 7999999999999999999999998754 333222 11 1223 677788
Q ss_pred ccCcEEEEccccchHHHHHHHH-HHhhhCCCCcEEEeCCCCcCHHHHhccCCCC--CcEEEeccCCCCCC---------C
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILSSSTSSFLPSVLSEHSTHR--SQFIVAHPVNPPYF---------I 261 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~-~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~--~r~ig~Hf~~p~~~---------~ 261 (290)
++||+||.|+|... -..++. ++.+.++++++|++. +|+.+ .+.. ...+ .+|++.||..|.+. .
T Consensus 71 ~~aDvVilavp~~~--~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~-~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g 145 (338)
T 1np3_A 71 AAADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQ-VVPRADLDVIMIAPKAPGHTVRSEFVKGGG 145 (338)
T ss_dssp HTCSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTS-SCCCTTCEEEEEEESSCSHHHHHHHHTTCC
T ss_pred hcCCEEEEeCCcHH--HHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHh-hcCCCCcEEEeccCCCCchhHHHHHhccCC
Confidence 99999999999766 478888 999999999988855 56655 3333 3223 35999999666531 3
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..+-++++..++++..+.+.++++.+|.
T Consensus 146 ~~~ii~~~~~~~~~a~~~~~~l~~~lG~ 173 (338)
T 1np3_A 146 IPDLIAIYQDASGNAKNVALSYACGVGG 173 (338)
T ss_dssp CCEEEEEEECSSSCHHHHHHHHHHHTTH
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 3344788888899999999999999985
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-10 Score=98.34 Aligned_cols=137 Identities=16% Similarity=0.099 Sum_probs=104.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcC----ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G----~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
-||++ +|.||..++..+.+.| ++|.+||++++. . ++..++++
T Consensus 7 i~iiG---~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~--------------g~~~~~~~ 52 (262)
T 2rcy_A 7 LGFMG---LGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------T--------------TLNYMSSN 52 (262)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------S--------------SSEECSCH
T ss_pred EEEEC---cCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------C--------------ceEEeCCH
Confidence 45665 7999999999999999 799999998753 0 12235677
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCC---cEEEeccCCCCCCCCeEEE
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRS---QFIVAHPVNPPYFIPLVEI 266 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~---r~ig~Hf~~p~~~~~lvEv 266 (290)
.++++++|+||.|+|.+. ..+++.++.+.+ ++.++++.+++++.+.+.+.+.... ++++.|+.... . .+..+
T Consensus 53 ~~~~~~~D~vi~~v~~~~--~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~-~-g~~~~ 127 (262)
T 2rcy_A 53 EELARHCDIIVCAVKPDI--AGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVG-E-GSFIY 127 (262)
T ss_dssp HHHHHHCSEEEECSCTTT--HHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGT-C-EEEEE
T ss_pred HHHHhcCCEEEEEeCHHH--HHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHc-C-CeEEE
Confidence 777889999999999654 778899998888 5667779999999988877665432 34455554332 1 25557
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++++.++++.++++.++++.+|+
T Consensus 128 ~~~~~~~~~~~~~~~~ll~~~G~ 150 (262)
T 2rcy_A 128 CSNKNVNSTDKKYVNDIFNSCGI 150 (262)
T ss_dssp EECTTCCHHHHHHHHHHHHTSEE
T ss_pred EeCCCCCHHHHHHHHHHHHhCCC
Confidence 78888999999999999999874
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.3e-10 Score=101.29 Aligned_cols=153 Identities=10% Similarity=0.189 Sum_probs=101.7
Q ss_pred hCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhc
Q psy17416 102 IGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFG 181 (290)
Q Consensus 102 lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 181 (290)
.+-+|+..+.-.-|||+ +|.||..+|..+++.|++|.+||++++.++++.+ .
T Consensus 13 ~~~~~~Mm~~mkIgiIG---lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------- 64 (358)
T 4e21_A 13 LGTENLYFQSMQIGMIG---LGRMGADMVRRLRKGGHECVVYDLNVNAVQALER-----------E-------------- 64 (358)
T ss_dssp ---------CCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------T--------------
T ss_pred cccchhhhcCCEEEEEC---chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------C--------------
Confidence 44445554323357776 8999999999999999999999999988765443 1
Q ss_pred ccccCCchHhhcccC---cEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCcEEEeccC
Q psy17416 182 LISGTPVLRECLEDA---IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPV 255 (290)
Q Consensus 182 ~i~~~~~l~~~l~~a---DlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r~ig~Hf~ 255 (290)
++..+++++++++++ |+||.|+|.+ ...+++.++.+.++++++|+..+++.+.+ .++..+. +-.+|+....+
T Consensus 65 g~~~~~s~~e~~~~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVs 142 (358)
T 4e21_A 65 GIAGARSIEEFCAKLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTS 142 (358)
T ss_dssp TCBCCSSHHHHHHHSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred CCEEeCCHHHHHhcCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCC
Confidence 234567888888888 9999999988 45677899999999999998655555432 4444433 22344443221
Q ss_pred CCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcC
Q psy17416 256 NPPY---FIPLVEIVPAAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 256 ~p~~---~~~lvEvv~~~~t~~e~~~~~~~~~~~lg 288 (290)
.++. ..+ .-++.| ++++++++..+++.+|
T Consensus 143 Gg~~~a~~G~-~im~GG---~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 143 GGIFGLERGY-CLMIGG---EKQAVERLDPVFRTLA 174 (358)
T ss_dssp CGGGHHHHCC-EEEEES---CHHHHHHTHHHHHHHS
T ss_pred CCHHHHhcCC-eeeecC---CHHHHHHHHHHHHHhc
Confidence 1110 011 223444 7899999999999998
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-10 Score=100.94 Aligned_cols=143 Identities=10% Similarity=0.108 Sum_probs=99.0
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..+|..+++.|++|.+||++++..++..+ . ++..+++++++++
T Consensus 5 ~iiG---~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~--------------g~~~~~~~~~~~~ 56 (287)
T 3pdu_A 5 GFLG---LGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------L--------------GARQASSPAEVCA 56 (287)
T ss_dssp EEEC---CSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------H--------------TCEECSCHHHHHH
T ss_pred EEEc---cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C--------------CCeecCCHHHHHH
Confidence 5565 7999999999999999999999999987765544 1 2345678888899
Q ss_pred cCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCC-CCCcEEEeccCCCCC---CCCeEE
Q psy17416 195 DAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPY---FIPLVE 265 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~-~~~r~ig~Hf~~p~~---~~~lvE 265 (290)
+||+||.|+|.+..++..++ +++.+.++++++++..+ +..+. .++..+. +..+|+....+..+. ...+..
T Consensus 57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~ 135 (287)
T 3pdu_A 57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMS-TVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLII 135 (287)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEE
T ss_pred cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEE
Confidence 99999999998876665554 66888888888887433 33333 3333332 223344332222211 013455
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++.+ +++.++++.++++.+|+
T Consensus 136 ~~gg---~~~~~~~~~~ll~~~g~ 156 (287)
T 3pdu_A 136 LAAG---DQSLFTDAGPAFAALGK 156 (287)
T ss_dssp EEEE---CHHHHHHTHHHHHHHEE
T ss_pred EEeC---CHHHHHHHHHHHHHhCC
Confidence 5555 78999999999999986
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.3e-10 Score=100.06 Aligned_cols=143 Identities=10% Similarity=0.060 Sum_probs=97.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..++..|++|.+||++++.+++..+ . ++..++++++++
T Consensus 34 I~iIG---~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----------~--------------g~~~~~~~~e~~ 85 (320)
T 4dll_A 34 ITFLG---TGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------L--------------GATIHEQARAAA 85 (320)
T ss_dssp EEEEC---CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------T--------------TCEEESSHHHHH
T ss_pred EEEEC---ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------C--------------CCEeeCCHHHHH
Confidence 46665 7999999999999999999999999987765443 1 234567888889
Q ss_pred ccCcEEEEccccchHHHHHHHH-HHhhhCCCCcEEEeCCCCcCH-H-HHhccCC-CCCcEEEeccCCCC---CCCCeEEE
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILSSSTSSFLP-S-VLSEHST-HRSQFIVAHPVNPP---YFIPLVEI 266 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~-~l~~~~~~~~ii~s~ts~~~~-~-~la~~~~-~~~r~ig~Hf~~p~---~~~~lvEv 266 (290)
++||+||.|+|++..++..+.. ++.+.++++++++..+++.+. + .++..+. ...+|+....+.++ ...++..+
T Consensus 86 ~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~ 165 (320)
T 4dll_A 86 RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIM 165 (320)
T ss_dssp TTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEE
T ss_pred hcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEE
Confidence 9999999999987766554442 566778888877643333222 2 3433332 22234432212111 11346667
Q ss_pred ecCCCCCHHHHHHHHHHHHHc
Q psy17416 267 VPAAWTSERVITRTREIMTEI 287 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~l 287 (290)
+.+ ++++++++.++++.+
T Consensus 166 ~gg---~~~~~~~~~~ll~~~ 183 (320)
T 4dll_A 166 AGG---KPADFERSLPLLKVF 183 (320)
T ss_dssp EES---CHHHHHHHHHHHHHH
T ss_pred eCC---CHHHHHHHHHHHHhc
Confidence 776 789999999999987
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=97.69 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=103.5
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
++++ +|.||..+|..+++.|++|.+||++++.++...+ .|....+++...+..++..++|++++++
T Consensus 33 ~VIG---aG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~-----------~~~~~~~l~g~~l~~~i~~t~d~~ea~~ 98 (356)
T 3k96_A 33 AILG---AGSWGTALALVLARKGQKVRLWSYESDHVDEMQA-----------EGVNNRYLPNYPFPETLKAYCDLKASLE 98 (356)
T ss_dssp EEEC---CSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHH-----------HSSBTTTBTTCCCCTTEEEESCHHHHHT
T ss_pred EEEC---ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------cCCCcccCCCCccCCCeEEECCHHHHHh
Confidence 4555 7999999999999999999999999988766544 2211111222223456777889988899
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH------HHhccCCCCCcEEEeccCCCCC------CCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS------VLSEHSTHRSQFIVAHPVNPPY------FIP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~------~la~~~~~~~r~ig~Hf~~p~~------~~~ 262 (290)
++|+||.|+|.. ..+++++++.+.+++++++++.++++... .+.+.++. .++..+ ..|.+ ..+
T Consensus 99 ~aDvVilaVp~~--~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~vl--sgP~~a~ev~~g~p 173 (356)
T 3k96_A 99 GVTDILIVVPSF--AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAVI--SGPSLATEVAANLP 173 (356)
T ss_dssp TCCEEEECCCHH--HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEEE--ESSCCHHHHHTTCC
T ss_pred cCCEEEECCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEEE--ECccHHHHHHcCCC
Confidence 999999999976 48899999999999999999988888764 23333331 111110 11111 111
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lg 288 (290)
. .++.+ ..+++..+++.+++...|
T Consensus 174 t-~~via-~~~~~~~~~v~~lf~~~~ 197 (356)
T 3k96_A 174 T-AVSLA-SNNSQFSKDLIERLHGQR 197 (356)
T ss_dssp E-EEEEE-ESCHHHHHHHHHHHCCSS
T ss_pred e-EEEEe-cCCHHHHHHHHHHhCCCC
Confidence 1 12222 247888888888887544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-10 Score=103.39 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=96.0
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|||+ +|.||..+|..+.+.||+|++||++++..++..+ .+.+...++.+++
T Consensus 8 IgfIG---LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-------------------------~G~~~~~s~~e~~ 59 (297)
T 4gbj_A 8 IAFLG---LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTK-------------------------LGATVVENAIDAI 59 (297)
T ss_dssp EEEEC---CSTTHHHHHHHHHHTTCEEEEC-------CTTTT-------------------------TTCEECSSGGGGC
T ss_pred EEEEe---cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-------------------------cCCeEeCCHHHHH
Confidence 57887 8999999999999999999999999976543222 1234567888899
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCC--------CC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF--------IP 262 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~--------~~ 262 (290)
++||+||.|+|.+..+...+...+.+.++++.+++ +.|+..++ ++++.+... |.||...|.. ..
T Consensus 60 ~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iii-d~sT~~p~~~~~~~~~~~~~----g~~~ldapVsGg~~~a~~g~ 134 (297)
T 4gbj_A 60 TPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHV-SMSTISPETSRQLAQVHEWY----GAHYVGAPIFARPEAVRAKV 134 (297)
T ss_dssp CTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEE-ECSCCCHHHHHHHHHHHHHT----TCEEEECCEECCHHHHHHTC
T ss_pred hcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEE-ECCCCChHHHHHHHHHHHhc----CCceecCCcCCCcccccccc
Confidence 99999999999988877766677888888988876 33333333 444444322 4555444421 12
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+.-++.| +++.++++..+++.+|+
T Consensus 135 l~im~gG---~~~~~~~~~~~l~~~g~ 158 (297)
T 4gbj_A 135 GNICLSG---NAGAKERIKPIVENFVK 158 (297)
T ss_dssp CEEEEEE---CHHHHHHHHHHHHTTCS
T ss_pred ceeeccc---chhHHHHHHHHHHHhhC
Confidence 4445555 78999999999999987
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=92.22 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=104.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||..++..+.+.|++|.++|++++..++..+.+.. ... . ..+. .+++.++++++|+||.
T Consensus 9 ~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~-----~--------~~~~-~~~~~~~~~~~D~Vi~ 70 (212)
T 1jay_A 9 TGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAG-----D--------ASIT-GMKNEDAAEACDIAVL 70 (212)
T ss_dssp TSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHS-----S--------CCEE-EEEHHHHHHHCSEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----ccc-----c--------CCCC-hhhHHHHHhcCCEEEE
Confidence 58999999999999999999999999877655442221 110 0 1122 2567777899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--------------HHHHhccCCCCCcEEEeccCCCC-------CC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--------------PSVLSEHSTHRSQFIVAHPVNPP-------YF 260 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--------------~~~la~~~~~~~r~ig~Hf~~p~-------~~ 260 (290)
|+|.+. .++++.++.+.++ ++++++.++++. .+++++.++. .+++..|+..+. ..
T Consensus 71 ~~~~~~--~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~~~~~~~~~~~~~~~ 146 (212)
T 1jay_A 71 TIPWEH--AIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSALHTIPAARFANLDEK 146 (212)
T ss_dssp CSCHHH--HHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECCTTCCHHHHHCTTCC
T ss_pred eCChhh--HHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEccchHHHHhhCcCCC
Confidence 999654 5588888877774 888888888776 5777776653 678876543221 22
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHc-CC
Q psy17416 261 IPLVEIVPAAWTSERVITRTREIMTEI-GM 289 (290)
Q Consensus 261 ~~lvEvv~~~~t~~e~~~~~~~~~~~l-gk 289 (290)
..+..+++++ +++.++++.++++.+ |+
T Consensus 147 ~~~~~~~~g~--~~~~~~~v~~l~~~~~G~ 174 (212)
T 1jay_A 147 FDWDVPVCGD--DDESKKVVMSLISEIDGL 174 (212)
T ss_dssp CCEEEEEEES--CHHHHHHHHHHHHHSTTE
T ss_pred CCccEEEECC--cHHHHHHHHHHHHHcCCC
Confidence 3366777775 689999999999999 86
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.3e-09 Score=92.39 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=103.4
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc--hHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV--LREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~--l~~~ 192 (290)
++++ +|.||..+|..+.+.|++|.+||++++.++...+ .|....... .....++..+++ +.++
T Consensus 7 ~iiG---~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 71 (316)
T 2ew2_A 7 AIAG---AGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK-----------NGLIADFNG-EEVVANLPIFSPEEIDHQ 71 (316)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HCEEEEETT-EEEEECCCEECGGGCCTT
T ss_pred EEEC---cCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-----------CCEEEEeCC-CeeEecceeecchhhccc
Confidence 4454 7999999999999999999999999987765543 121110000 001112332222 2223
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH-HHHhccCCCCCcEE-EeccCCCCCCC---------
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFI-VAHPVNPPYFI--------- 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~la~~~~~~~r~i-g~Hf~~p~~~~--------- 261 (290)
++++|+||.|+|.+. -.++++++.+.++++++|++.++++.. ..+++.+. +.+++ |.+++..+..+
T Consensus 72 ~~~~d~vi~~v~~~~--~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~ 148 (316)
T 2ew2_A 72 NEQVDLIIALTKAQQ--LDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD 148 (316)
T ss_dssp SCCCSEEEECSCHHH--HHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred CCCCCEEEEEecccc--HHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence 348999999999764 578889999999999999988888876 45655554 34777 44332222111
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
..+.+++...++++..+.+.++++.+|.
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~ 176 (316)
T 2ew2_A 149 GEIELENIDPSGKKFALEVVDVFQKAGL 176 (316)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTC
T ss_pred CcEEEeecCCCccHHHHHHHHHHHhCCC
Confidence 1233455556788999999999999986
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=94.48 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=95.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..++..+...|++|.++|++++. +..+++++||+||.
T Consensus 30 ~G~mG~~la~~l~~~G~~V~~~~~~~~~--------------------------------------~~~~~~~~aDvVil 71 (298)
T 2pv7_A 30 YGKLGGLFARYLRASGYPISILDREDWA--------------------------------------VAESILANADVVIV 71 (298)
T ss_dssp TSHHHHHHHHHHHTTTCCEEEECTTCGG--------------------------------------GHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECCccc--------------------------------------CHHHHhcCCCEEEE
Confidence 6899999999999999999999987641 23446789999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC---HHHHhccCCCCCcEEEeccCCCCC----CCCeEEEecCCCCCH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPPY----FIPLVEIVPAAWTSE 274 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~la~~~~~~~r~ig~Hf~~p~~----~~~lvEvv~~~~t~~ 274 (290)
|+|.+. ..++++++.+.++++++|+.. ++.. +..+.... +.++++.||+.++. ....+-++++. ++
T Consensus 72 avp~~~--~~~vl~~l~~~l~~~~iv~~~-~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~~~--~~ 144 (298)
T 2pv7_A 72 SVPINL--TLETIERLKPYLTENMLLADL-TSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCDGR--FP 144 (298)
T ss_dssp CSCGGG--HHHHHHHHGGGCCTTSEEEEC-CSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEEEE--CG
T ss_pred eCCHHH--HHHHHHHHHhhcCCCcEEEEC-CCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEecCC--CH
Confidence 999776 789999999999999987643 3333 33444443 47999999965432 33456677764 78
Q ss_pred HHHHHHHHHHHHcCC
Q psy17416 275 RVITRTREIMTEIGM 289 (290)
Q Consensus 275 e~~~~~~~~~~~lgk 289 (290)
+.++++.++++.+|.
T Consensus 145 ~~~~~v~~l~~~~G~ 159 (298)
T 2pv7_A 145 ERYEWLLEQIQIWGA 159 (298)
T ss_dssp GGTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 889999999999986
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-09 Score=93.77 Aligned_cols=143 Identities=9% Similarity=0.083 Sum_probs=96.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+.+.|++|.+||++++.++++.+ .| +...+++.+++
T Consensus 12 IgiIG---~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g--------------~~~~~~~~e~~ 63 (306)
T 3l6d_A 12 VSVIG---LGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------AG--------------AHLCESVKAAL 63 (306)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HT--------------CEECSSHHHHH
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CC--------------CeecCCHHHHH
Confidence 46776 8999999999999999999999999988776543 11 23457888889
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEe-CCCCcCHH-HHhccCC-CCCcEEEeccCCCC-C--CCCeEE
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSS-STSSFLPS-VLSEHST-HRSQFIVAHPVNPP-Y--FIPLVE 265 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s-~ts~~~~~-~la~~~~-~~~r~ig~Hf~~p~-~--~~~lvE 265 (290)
++||+||.|+|.+..++..+ . .+... .++++++. +|++.... +++..+. ...+|+....+..+ . ...+..
T Consensus 64 ~~aDvVi~~vp~~~~~~~v~-~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i 141 (306)
T 3l6d_A 64 SASPATIFVLLDNHATHEVL-GMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS 141 (306)
T ss_dssp HHSSEEEECCSSHHHHHHHH-TSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred hcCCEEEEEeCCHHHHHHHh-cccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence 99999999999887665444 4 56554 56776663 33333222 4443332 23456554322211 1 113455
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++.+ ++++++++.++++.+|+
T Consensus 142 ~~gg---~~~~~~~~~~ll~~lg~ 162 (306)
T 3l6d_A 142 IHTG---DREAFEQHRALLEGLAG 162 (306)
T ss_dssp EEEE---CHHHHHHHHHHHHTTCS
T ss_pred EEcC---CHHHHHHHHHHHHHhcC
Confidence 6665 79999999999999965
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=96.68 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=100.6
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..++..+...|++|.+||++++..++..+ . ++..++++++++
T Consensus 7 i~iiG---~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~--------------g~~~~~~~~~~~ 58 (301)
T 3cky_A 7 IGFIG---LGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------Q--------------GAQACENNQKVA 58 (301)
T ss_dssp EEEEC---CCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------T--------------TCEECSSHHHHH
T ss_pred EEEEC---ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C--------------CCeecCCHHHHH
Confidence 35565 7999999999999999999999999987665433 1 123456788888
Q ss_pred ccCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCc--CHHHHhccCCC-CCcEEEeccCCCCC----CCCeE
Q psy17416 194 EDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSF--LPSVLSEHSTH-RSQFIVAHPVNPPY----FIPLV 264 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~--~~~~la~~~~~-~~r~ig~Hf~~p~~----~~~lv 264 (290)
.++|+||.|+|.+..++..+. .++.+.+++++++++.+++. ....+.+.+.. ..+++.. +..+.. ...+.
T Consensus 59 ~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~ 137 (301)
T 3cky_A 59 AASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLT 137 (301)
T ss_dssp HHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEE
T ss_pred hCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeE
Confidence 899999999998777655554 37778889999998777766 34466555432 2344432 221110 02234
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.++++ +++.++++.++++.+|+
T Consensus 138 ~~~~g---~~~~~~~v~~ll~~~g~ 159 (301)
T 3cky_A 138 IMVGA---SEAVFEKIQPVLSVIGK 159 (301)
T ss_dssp EEEES---CHHHHHHHHHHHHHHEE
T ss_pred EEECC---CHHHHHHHHHHHHHhcC
Confidence 55555 78999999999999885
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.4e-10 Score=100.47 Aligned_cols=145 Identities=13% Similarity=0.088 Sum_probs=102.8
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..++..+...|++|.+||++++.+++..+ .| +..+.++.+++
T Consensus 33 I~iIG---~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g--------------~~~~~~~~~~~ 84 (316)
T 2uyy_A 33 IGFLG---LGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-----------EG--------------ARLGRTPAEVV 84 (316)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-----------TT--------------CEECSCHHHHH
T ss_pred EEEEc---ccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------cC--------------CEEcCCHHHHH
Confidence 45565 7999999999999999999999999887654332 11 12345777778
Q ss_pred ccCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCC--cCHHHHhccCC-CCCcEEEeccCCCC---CCCCeEE
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSS--FLPSVLSEHST-HRSQFIVAHPVNPP---YFIPLVE 265 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~--~~~~~la~~~~-~~~r~ig~Hf~~p~---~~~~lvE 265 (290)
+++|+||+|+|++..++..+.+ .+.+.+++++++++.++. ....++++.+. ++.++++.++++.+ ....+++
T Consensus 85 ~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~ 164 (316)
T 2uyy_A 85 STCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 164 (316)
T ss_dssp HHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred hcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEE
Confidence 8999999999987766544433 133667888877643322 23445665553 45688988877533 2345777
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++++ +++.++++.++++.+|+
T Consensus 165 ~~~g---~~~~~~~v~~ll~~~g~ 185 (316)
T 2uyy_A 165 LAAG---DRGLYEDCSSCFQAMGK 185 (316)
T ss_dssp EEEE---CHHHHHHTHHHHHHHEE
T ss_pred EeCC---CHHHHHHHHHHHHHhcC
Confidence 7777 68899999999999885
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=94.59 Aligned_cols=106 Identities=11% Similarity=0.164 Sum_probs=93.1
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCC-ee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LV 79 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~-lv 79 (290)
++|++++++++|+||.|+ +.....++++++...+++++++.|+++++++..+.+.+..+.+++++|+.+|+.... ..
T Consensus 54 ~~~~~e~~~~aDvVilav--~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~ 131 (247)
T 3gt0_A 54 TTDNNEVAKNADILILSI--KPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMS 131 (247)
T ss_dssp CSCHHHHHHHCSEEEECS--CTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEE
T ss_pred eCChHHHHHhCCEEEEEe--CHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceE
Confidence 367888999999999999 567789999999999999999999999999999999887778999999999998776 88
Q ss_pred eEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 80 EIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 80 Eiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.++.++.++++.++.+..+++.+|+ .+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~ 160 (247)
T 3gt0_A 132 ALCPNEMVTEKDLEDVLNIFNSFGQ-TEIV 160 (247)
T ss_dssp EEEECTTCCHHHHHHHHHHHGGGEE-EEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence 8999999999999999999999998 5555
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=97.26 Aligned_cols=116 Identities=13% Similarity=0.193 Sum_probs=86.3
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..+|..++..|+ +|.+||++++.++.....+.+..... ....+++.++|+ +++++||+||
T Consensus 22 aG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~-------------~~~~~i~~t~d~-~al~~aD~VI 87 (328)
T 2hjr_A 22 AGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALI-------------GSPAKIFGENNY-EYLQNSDVVI 87 (328)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHH-------------TCCCCEEEESCG-GGGTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhcc-------------CCCCEEEECCCH-HHHCCCCEEE
Confidence 69999999999999999 99999999988876444444332211 012467777888 5799999999
Q ss_pred Ecc--cc------------chHHHHHHHHHHhhhCCCCcEE--EeCCCCcCHHHHhccCC--CCCcEEEec
Q psy17416 201 ESV--PE------------ILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHST--HRSQFIVAH 253 (290)
Q Consensus 201 eav--pe------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~la~~~~--~~~r~ig~H 253 (290)
+++ |+ +..+++++++++.+++ +++++ +||.+... +.++.... +|.|++|+.
T Consensus 88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~~ 156 (328)
T 2hjr_A 88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGMS 156 (328)
T ss_dssp ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEESC
T ss_pred EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEeC
Confidence 998 65 6688999999999998 55554 58877654 45554333 678999984
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.2e-09 Score=93.06 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=96.7
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..++..+...|++|.+||++++..++..+ .| +..+.+++++++
T Consensus 9 ~iiG---~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g--------------~~~~~~~~~~~~ 60 (299)
T 1vpd_A 9 GFIG---LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG--------------AETASTAKAIAE 60 (299)
T ss_dssp EEEC---CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT--------------CEECSSHHHHHH
T ss_pred EEEC---chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC--------------CeecCCHHHHHh
Confidence 4555 7999999999999999999999999987765443 11 234567877888
Q ss_pred cCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcC--HHHHhccCCC-CCcEEEeccCC-CCC--CCCeEEE
Q psy17416 195 DAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPVN-PPY--FIPLVEI 266 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~-~~r~ig~Hf~~-p~~--~~~lvEv 266 (290)
++|+||.|+|.+..++..++ +++.+.+++++++++.+++.+ ...+++.+.. ..+|+....+. ++. ...+.-+
T Consensus 61 ~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~ 140 (299)
T 1vpd_A 61 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVM 140 (299)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEE
Confidence 99999999997776655444 567788899998876555443 2355554432 22333321111 000 0113334
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+.+ +++.++++.++++.+|+
T Consensus 141 ~~~---~~~~~~~~~~ll~~~g~ 160 (299)
T 1vpd_A 141 VGG---DKAIFDKYYDLMKAMAG 160 (299)
T ss_dssp EES---CHHHHHHHHHHHHTTEE
T ss_pred eCC---CHHHHHHHHHHHHHHcC
Confidence 443 78999999999999885
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-08 Score=91.04 Aligned_cols=146 Identities=13% Similarity=0.088 Sum_probs=95.2
Q ss_pred eeeEEecccchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC-chHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~-~l~~ 191 (290)
-||++ +|.||..+|..+++.| ++|.+||++++..+++.+..+. +.+.| + .+ ++.+
T Consensus 27 IgvIG---~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~----~~~~g--------------~--~~~s~~e 83 (317)
T 4ezb_A 27 IAFIG---FGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRAR----AAELG--------------V--EPLDDVA 83 (317)
T ss_dssp EEEEC---CSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHH----HHHTT--------------C--EEESSGG
T ss_pred EEEEC---ccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHH----HHHCC--------------C--CCCCHHH
Confidence 35666 7999999999999999 9999999998422221111111 11111 1 34 6777
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEeccCCCC--CCCCeEEE
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVAHPVNPP--YFIPLVEI 266 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~Hf~~p~--~~~~lvEv 266 (290)
++++||+||.|+|.+... +.+.++.+.+++++++++.++..+.+ .+++.+.. ..+|+....+.|. ....+..+
T Consensus 84 ~~~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~ 161 (317)
T 4ezb_A 84 GIACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPIL 161 (317)
T ss_dssp GGGGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEE
T ss_pred HHhcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEE
Confidence 889999999999988865 45688999999999887544333222 34433322 2345443222222 23457778
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++|+.. +++.++++.+|+
T Consensus 162 vgg~~~-----~~~~~ll~~~g~ 179 (317)
T 4ezb_A 162 VAGRRA-----VEVAERLNALGM 179 (317)
T ss_dssp EESTTH-----HHHHHHHHTTTC
T ss_pred EeCChH-----HHHHHHHHHhCC
Confidence 888543 788999999987
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-09 Score=90.01 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=92.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||.++|..+.+.|++|.+|++. + .+
T Consensus 9 I~IIG---~G~~G~sLA~~L~~~G~~V~~~~~~-------------------------------------------~-~~ 41 (232)
T 3dfu_A 9 VGIFD---DGSSTVNMAEKLDSVGHYVTVLHAP-------------------------------------------E-DI 41 (232)
T ss_dssp EEEEC---CSCCCSCHHHHHHHTTCEEEECSSG-------------------------------------------G-GG
T ss_pred EEEEe---eCHHHHHHHHHHHHCCCEEEEecCH-------------------------------------------H-Hh
Confidence 35665 7999999999999999999999982 1 24
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTS 273 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~ 273 (290)
.+|| |.|+|.+. ..++++++.+.++++++++..+++.+.+.+........+|++.||..... .+ +.++ +
T Consensus 42 ~~aD--ilavP~~a--i~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~~---~~-i~a~---d 110 (232)
T 3dfu_A 42 RDFE--LVVIDAHG--VEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQDR---WV-ASAL---D 110 (232)
T ss_dssp GGCS--EEEECSSC--HHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETTE---EE-EEES---S
T ss_pred ccCC--EEEEcHHH--HHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCCc---ee-eeCC---C
Confidence 6788 88999874 67888999999999999987666666655555445567999999875432 22 2332 7
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy17416 274 ERVITRTREIMTEIGMK 290 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk~ 290 (290)
++.++.+..+++.+|++
T Consensus 111 ~~a~~~l~~L~~~lG~~ 127 (232)
T 3dfu_A 111 ELGETIVGLLVGELGGS 127 (232)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCE
Confidence 88999999999999973
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-08 Score=95.10 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=104.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hhh------hcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EEQ------FGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~~------~~~i~~~~~l~~~l~ 194 (290)
+|.||..+|..+++.|++|++||++++.++...+ .+.... .+. .+. .+++++++|++++++
T Consensus 16 ~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~-----------~~~~i~-e~gl~~~l~~~~~~~~l~~ttd~~~a~~ 83 (478)
T 2y0c_A 16 SGSVGLVTGACLADIGHDVFCLDVDQAKIDILNN-----------GGVPIH-EPGLKEVIARNRSAGRLRFSTDIEAAVA 83 (478)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TCCSSC-CTTHHHHHHHHHHTTCEEEECCHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHC-----------CCCCcC-CCCHHHHHHHhcccCCEEEECCHHHHhh
Confidence 7999999999999999999999999998776554 111110 111 111 246788899988899
Q ss_pred cCcEEEEcccc--------chHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccC----CCC---CcEEEeccCC
Q psy17416 195 DAIFIQESVPE--------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHS----THR---SQFIVAHPVN 256 (290)
Q Consensus 195 ~aDlVieavpe--------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~----~~~---~r~ig~Hf~~ 256 (290)
+||+||.|+|. ++....++++++.+.++++++++ +.|++++. .+...+ ..+ .++ .+.++
T Consensus 84 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV-~~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v~~~ 160 (478)
T 2y0c_A 84 HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIV-DKSTVPVGTAERVRAAVAEELAKRGGDQMF--SVVSN 160 (478)
T ss_dssp HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHHHHTTCCCCE--EEEEC
T ss_pred cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEE-EeCCcCCCchHHHHHHHHHHhcCCCCCccE--EEEEC
Confidence 99999999998 44678899999999999999886 44565442 222111 111 222 24566
Q ss_pred CCCCCCeE---------EEecCCCCCH----HHHHHHHHHHHHcCC
Q psy17416 257 PPYFIPLV---------EIVPAAWTSE----RVITRTREIMTEIGM 289 (290)
Q Consensus 257 p~~~~~lv---------Evv~~~~t~~----e~~~~~~~~~~~lgk 289 (290)
|....+-. .|+.|.. ++ +..+++.++++.+++
T Consensus 161 Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~ 205 (478)
T 2y0c_A 161 PEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNR 205 (478)
T ss_dssp CCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGS
T ss_pred hhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhc
Confidence 66655533 3555543 34 788999999887653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=91.00 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=92.6
Q ss_pred CcHHh-hcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC--hHHHhcccCCCCceeeeccCCCCCC---
Q psy17416 2 PVLRE-CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPYF--- 75 (290)
Q Consensus 2 ~~l~~-~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~--~~~l~~~~~~~~r~~g~hf~~P~~~--- 75 (290)
+|+++ ++++||+||.|+|.+. ..++++++...+++++|+.+++|.-+ +..+.+.. |+|+++.|+++++..
T Consensus 85 ~~~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l--~~~~v~~hPm~G~e~sG~ 160 (314)
T 3ggo_A 85 TSIAKVEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGV 160 (314)
T ss_dssp SCTTGGGGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEECCCCCCCSG
T ss_pred CCHHHHhhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhc--CCCEEecCcccCCcccch
Confidence 57888 8999999999999875 57899999999999999998877643 55666655 349999999997642
Q ss_pred ---------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEE
Q psy17416 76 ---------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFAL 118 (290)
Q Consensus 76 ---------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~ 118 (290)
...+.+++++.++++.++.+.++++.+|+.++.+..+....++
T Consensus 161 ~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~ 212 (314)
T 3ggo_A 161 EYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVF 212 (314)
T ss_dssp GGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHH
T ss_pred hhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHH
Confidence 4688999999999999999999999999999887544444443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=86.63 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=97.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEE-ecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l-~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
|+++ .|.||..++..+.+.|++|.+ +|++++.+++..+.. | +..+.+..+++
T Consensus 27 ~IIG---~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~----------g--------------~~~~~~~~~~~ 79 (220)
T 4huj_A 27 AIIG---AGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF----------G--------------ASVKAVELKDA 79 (220)
T ss_dssp EEEE---CHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH----------T--------------TTEEECCHHHH
T ss_pred EEEC---CCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh----------C--------------CCcccChHHHH
Confidence 4565 799999999999999999999 999998776543311 1 11122334457
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--------------CHHHHhccCCCCCcEEEeccCCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--------------LPSVLSEHSTHRSQFIVAHPVNPPY 259 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--------------~~~~la~~~~~~~r~ig~Hf~~p~~ 259 (290)
.++|+||.|+|.. ...++++++.+ + +++++++.+.++ ..+.+++.++ ..+++...++.|..
T Consensus 80 ~~aDvVilavp~~--~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~~ 154 (220)
T 4huj_A 80 LQADVVILAVPYD--SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPAA 154 (220)
T ss_dssp TTSSEEEEESCGG--GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCHH
T ss_pred hcCCEEEEeCChH--HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCHH
Confidence 8999999999944 47788888876 4 577888877777 4556766665 34666554433322
Q ss_pred CC---------CeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 260 FI---------PLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 260 ~~---------~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.. +..-++.+ .+++..+++.++++.+|++
T Consensus 155 v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~ 192 (220)
T 4huj_A 155 VLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFA 192 (220)
T ss_dssp HHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCE
T ss_pred HhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCC
Confidence 11 12223333 3699999999999999973
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-09 Score=94.52 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=97.0
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..++..+...|++|.+|| +++..++..+ . ++..+++++++++
T Consensus 7 ~iiG---~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~-----------~--------------g~~~~~~~~~~~~ 57 (295)
T 1yb4_A 7 GFIG---LGIMGSPMAINLARAGHQLHVTT-IGPVADELLS-----------L--------------GAVNVETARQVTE 57 (295)
T ss_dssp EECC---CSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT-----------T--------------TCBCCSSHHHHHH
T ss_pred EEEc---cCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH-----------c--------------CCcccCCHHHHHh
Confidence 4554 79999999999999999999999 8876554332 1 1234567888889
Q ss_pred cCcEEEEccccchHHHHHHHH--HHhhhCCCCcEEEeCCCCc--CHHHHhccCCCCCcEEEeccCCCCCC--------CC
Q psy17416 195 DAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSF--LPSVLSEHSTHRSQFIVAHPVNPPYF--------IP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~--~~~~la~~~~~~~r~ig~Hf~~p~~~--------~~ 262 (290)
++|+||.|+|.+..++..+.. ++.+.+++++++++.+++. ...++++.+... |.||++.|.. ..
T Consensus 58 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g~ 133 (295)
T 1yb4_A 58 FADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREGT 133 (295)
T ss_dssp TCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTC
T ss_pred cCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcCC
Confidence 999999999988766544432 6777888999888655443 234565554332 4454443321 23
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+..++++ +++.++++.++++.+|+
T Consensus 134 ~~~~~~~---~~~~~~~~~~ll~~~g~ 157 (295)
T 1yb4_A 134 LSIMVGG---EQKVFDRVKPLFDILGK 157 (295)
T ss_dssp EEEEEES---CHHHHHHHHHHHHHHEE
T ss_pred eEEEECC---CHHHHHHHHHHHHHhcC
Confidence 4556665 78999999999999885
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.3e-09 Score=91.09 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=83.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCC-----CCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNP-----PYFI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P-----~~~~ 76 (290)
+|++++++++|+||.|+|++ .+ .++++++.+.+++++++.+++++++.+.+++...++. ..|+++| ...+
T Consensus 60 ~~~~~~~~~~Dvvi~av~~~-~~-~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~~---~~~~~~~~~g~~~~~~ 134 (266)
T 3d1l_A 60 TDLAEVNPYAKLYIVSLKDS-AF-AELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYG---VFYPMQTFSKQREVDF 134 (266)
T ss_dssp SCGGGSCSCCSEEEECCCHH-HH-HHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSEE---EEEECCCC---CCCCC
T ss_pred CCHHHHhcCCCEEEEecCHH-HH-HHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhcc---CcCCceecCCCchhhc
Confidence 57888899999999999999 45 8899999999999999999999999999887775532 3677775 2234
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
+-.+++. ..++++.++.+.++++.+|+.++.+.
T Consensus 135 ~~~~~~v-~~~~~~~~~~~~~l~~~~g~~~~~~~ 167 (266)
T 3d1l_A 135 KEIPFFI-EASSTEDAAFLKAIASTLSNRVYDAD 167 (266)
T ss_dssp TTCCEEE-EESSHHHHHHHHHHHHTTCSCEEECC
T ss_pred CCCeEEE-ecCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 5555544 34689999999999999999899883
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-09 Score=95.24 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=94.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..++..+.+.|++|.+||++++.+++..+ . ++..+++++++++
T Consensus 4 ~iiG---~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~--------------g~~~~~~~~~~~~ 55 (296)
T 2gf2_A 4 GFIG---LGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------A--------------GEQVVSSPADVAE 55 (296)
T ss_dssp EEEC---CSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT-----------T--------------TCEECSSHHHHHH
T ss_pred EEEe---ccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------c--------------CCeecCCHHHHHh
Confidence 4555 7999999999999999999999999987664432 1 1334567888889
Q ss_pred cCcEEEEccccchHHHHHHHHH---HhhhCCCCcEEEeCCCCcCHHHHhc---cCCCCCcEEEeccCCCCCCC-------
Q psy17416 195 DAIFIQESVPEILQIKHQVYRA---IDIFMSSNTILSSSTSSFLPSVLSE---HSTHRSQFIVAHPVNPPYFI------- 261 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~---l~~~~~~~~ii~s~ts~~~~~~la~---~~~~~~r~ig~Hf~~p~~~~------- 261 (290)
++|+||.|+|.+...+. ++.+ +.+.+++++++++ ++++.++.... ..... |.+|++.|...
T Consensus 56 ~~Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~ 129 (296)
T 2gf2_A 56 KADRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARS 129 (296)
T ss_dssp HCSEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHH
T ss_pred cCCEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhc
Confidence 99999999987766544 4444 3446788998887 88888765432 22211 23333332111
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
....++.+ .+++.++++.++++.+|+
T Consensus 130 ~~~~~~~~--~~~~~~~~v~~l~~~~g~ 155 (296)
T 2gf2_A 130 GNLTFMVG--GVEDEFAAAQELLGCMGS 155 (296)
T ss_dssp TCEEEEEE--SCGGGHHHHHHHHTTTEE
T ss_pred CcEEEEeC--CCHHHHHHHHHHHHHHcC
Confidence 12233333 368899999999998875
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-09 Score=94.01 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=86.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCcee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
-||++ +|.||..++..+... ++| .+||++++..+++.+. .|. .+.+++++
T Consensus 5 I~iIG---~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------~g~---------------~~~~~~~~ 55 (276)
T 2i76_A 5 LNFVG---TGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------YGG---------------KAATLEKH 55 (276)
T ss_dssp CEEES---CCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------TCC---------------CCCSSCCC
T ss_pred EEEEe---CCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------cCC---------------ccCCHHHH
Confidence 35665 799999999988887 899 5999999877655431 111 24566666
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEecc----CCCCCC-CCeEEEe
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP----VNPPYF-IPLVEIV 267 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf----~~p~~~-~~lvEvv 267 (290)
++++|+||+|+|.+. ..+++.++. ++++++++.+++++.+.+... .+.+.|+ .+++.. ..+.++.
T Consensus 56 ~~~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~ 125 (276)
T 2i76_A 56 PELNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIV 125 (276)
T ss_dssp CC---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCC
T ss_pred HhcCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCe
Confidence 789999999999887 677877665 677888766667777666433 4567774 343321 1122232
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC
Q psy17416 268 PAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 268 ~~~~t~~e~~~~~~~~~~~lgk 289 (290)
....++++.++.+.++++.+|+
T Consensus 126 ~~~~~~~~~~~~~~~l~~~lG~ 147 (276)
T 2i76_A 126 FGLEGDERGLPIVKKIAEEISG 147 (276)
T ss_dssp EEECCCTTTHHHHHHHHHHHCS
T ss_pred EEEEeChHHHHHHHHHHHHhCC
Confidence 2223466779999999999996
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-09 Score=93.56 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=86.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..+|..++..|+ +|.+||++++.++.....+.+.... .+ ...+++.++|+++++++||+||
T Consensus 17 aG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~---~~----------~~~~i~~t~d~~ea~~~aDiVi 83 (331)
T 1pzg_A 17 SGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV---VD----------TNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH---TT----------CCCCEEEECSHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhc---cC----------CCCEEEEeCCHHHHhCCCCEEE
Confidence 69999999999999998 9999999998887654444443321 10 1246777889987899999999
Q ss_pred Ecc--ccch-----------------HHHHHHHHHHhhhCCCCcEE--EeCCCCcCHHHHhccC-C-CCCcEEEe
Q psy17416 201 ESV--PEIL-----------------QIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHS-T-HRSQFIVA 252 (290)
Q Consensus 201 eav--pe~~-----------------~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~la~~~-~-~~~r~ig~ 252 (290)
+++ |++. .+++++++++.+++ +++++ +||.+++. +.++... . .|.|++|+
T Consensus 84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rviG~ 156 (331)
T 1pzg_A 84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMICGM 156 (331)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEEC
T ss_pred EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEEec
Confidence 999 7643 35899999999998 56655 47777765 4554333 3 57899998
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=97.71 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=101.6
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||..+|..+++.|++|.+||++++.+++..+. ...+ .++..+.+++++
T Consensus 12 ~IgvIG---lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~------------~~~~--------~gi~~~~s~~e~ 68 (497)
T 2p4q_A 12 DFGLIG---LAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN------------EAKG--------KSIIGATSIEDF 68 (497)
T ss_dssp SEEEEC---CSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT------------TTTT--------SSEECCSSHHHH
T ss_pred CEEEEe---eHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc------------cccC--------CCeEEeCCHHHH
Confidence 346666 89999999999999999999999999887665430 0000 235567788887
Q ss_pred ccc---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCCC-CCcEEEeccCCCCC---CCCe
Q psy17416 193 LED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHSTH-RSQFIVAHPVNPPY---FIPL 263 (290)
Q Consensus 193 l~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~~-~~r~ig~Hf~~p~~---~~~l 263 (290)
+++ +|+||.|||....+ +++++++.+.++++.+|++.+++.+. ..+++.+.. ..+|+++.....+. ..+
T Consensus 69 v~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~- 146 (497)
T 2p4q_A 69 ISKLKRPRKVMLLVKAGAPV-DALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP- 146 (497)
T ss_dssp HHTSCSSCEEEECCCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-
T ss_pred HhcCCCCCEEEEEcCChHHH-HHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-
Confidence 776 99999999987554 45668899999999988865555443 345444422 23555553222211 111
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
. ++.+ .+++.++++.++++.+|+
T Consensus 147 ~-im~g--g~~e~~~~v~~ll~~~g~ 169 (497)
T 2p4q_A 147 S-LMPG--GSEEAWPHIKNIFQSISA 169 (497)
T ss_dssp E-EEEE--ECGGGHHHHHHHHHHHSC
T ss_pred e-EEec--CCHHHHHHHHHHHHHhcC
Confidence 1 3333 268899999999999986
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.3e-08 Score=91.29 Aligned_cols=148 Identities=17% Similarity=0.196 Sum_probs=102.6
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||..+|..+++.|++|.+||++++..++..+.. + + .++..+++++++
T Consensus 17 ~IgvIG---lG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~----------~---~--------~gi~~~~s~~e~ 72 (480)
T 2zyd_A 17 QIGVVG---MAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN----------P---G--------KKLVPYYTVKEF 72 (480)
T ss_dssp SEEEEC---CSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS----------T---T--------SCEEECSSHHHH
T ss_pred eEEEEc---cHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC----------C---C--------CCeEEeCCHHHH
Confidence 356676 899999999999999999999999998877655411 0 0 234557788887
Q ss_pred ccc---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCC-CCCcEEEeccCCCC---CCCCe
Q psy17416 193 LED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHST-HRSQFIVAHPVNPP---YFIPL 263 (290)
Q Consensus 193 l~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~-~~~r~ig~Hf~~p~---~~~~l 263 (290)
+++ +|+||.|||....+ +++++++.+.++++++|++.+++... ..+++.+. ...+|+++.....+ ...+
T Consensus 73 v~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~- 150 (480)
T 2zyd_A 73 VESLETPRRILLMVKAGAGT-DAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP- 150 (480)
T ss_dssp HHTBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-
T ss_pred HhCCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-
Confidence 776 99999999986444 46778899999999988866666543 34444432 23456554322111 0122
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
. ++.+ .+++.++++.++++.+|+
T Consensus 151 ~-i~~g--g~~~~~~~v~~ll~~~g~ 173 (480)
T 2zyd_A 151 S-IMPG--GQKEAYELVAPILTKIAA 173 (480)
T ss_dssp E-EEEE--SCHHHHHHHHHHHHHHSC
T ss_pred e-EEec--CCHHHHHHHHHHHHHHhc
Confidence 2 3333 268999999999999986
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=85.85 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=89.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||..++..+...|++|.++|++++..++..+ . ++..+ +++++++++|+||.
T Consensus 36 ~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~--------------g~~~~-~~~~~~~~~DvVi~ 89 (215)
T 2vns_A 36 SGDFARSLATRLVGSGFKVVVGSRNPKRTARLFP-----------S--------------AAQVT-FQEEAVSSPEVIFV 89 (215)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSB-----------T--------------TSEEE-EHHHHTTSCSEEEE
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------c--------------CCcee-cHHHHHhCCCEEEE
Confidence 7999999999999999999999999876543221 1 12223 67778899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh----------ccCCCCCcEEEe-ccC-----CCCC-CCC-e
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS----------EHSTHRSQFIVA-HPV-----NPPY-FIP-L 263 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la----------~~~~~~~r~ig~-Hf~-----~p~~-~~~-l 263 (290)
|+|.+. ...+++ +.+.+ +++++++.+++.+.+.+. +.+. ..+++.. ++. .+.. ..+ .
T Consensus 90 av~~~~--~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~~~~~g~~~ 164 (215)
T 2vns_A 90 AVFREH--YSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQAGPRDGNRQ 164 (215)
T ss_dssp CSCGGG--SGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHTCSCSSCCE
T ss_pred CCChHH--HHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhcccccCCcee
Confidence 999653 445554 66666 788898888888776542 3332 2345432 221 1110 011 1
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+.+.. .+++.++++.++++.+|+
T Consensus 165 ~~~~g---~~~~~~~~v~~ll~~~G~ 187 (215)
T 2vns_A 165 VPICG---DQPEAKRAVSEMALAMGF 187 (215)
T ss_dssp EEEEE---SCHHHHHHHHHHHHHTTC
T ss_pred EEEec---CCHHHHHHHHHHHHHcCC
Confidence 22222 389999999999999997
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=90.96 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=84.4
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..++..|+ +|.++|++++.++.....+++.+... ....+++.++|+ +++++||+||
T Consensus 12 aG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~-------------~~~~~i~~t~d~-~al~~aD~Vi 77 (322)
T 1t2d_A 12 SGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMA-------------YSNCKVSGSNTY-DDLAGADVVI 77 (322)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHH-------------TCCCCEEEECCG-GGGTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhc-------------CCCcEEEECCCH-HHhCCCCEEE
Confidence 69999999999999998 99999999987765444444432210 012356666788 6799999999
Q ss_pred Ecc--ccc-----------------hHHHHHHHHHHhhhCCCCcEE--EeCCCCcCHHHHhccCC--CCCcEEEe
Q psy17416 201 ESV--PEI-----------------LQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHST--HRSQFIVA 252 (290)
Q Consensus 201 eav--pe~-----------------~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~la~~~~--~~~r~ig~ 252 (290)
+++ |++ ..+++++++++.+++ +++++ +||.+++. +.++.... .|.|++|+
T Consensus 78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG~ 150 (322)
T 1t2d_A 78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIGL 150 (322)
T ss_dssp ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEEC
T ss_pred EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEec
Confidence 998 653 347999999999998 56654 57877765 45554433 57899998
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=89.73 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=99.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhh-------hhcccccCC
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE-------QFGLISGTP 187 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~-------~~~~i~~~~ 187 (290)
+|++ +|.||..+|..+++.|++|++||++++.++...+ |...-..+... ..+++++++
T Consensus 12 ~vIG---lG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~------------g~~~~~epgl~~~~~~~~~~g~l~~tt 76 (446)
T 4a7p_A 12 AMIG---TGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQ------------NVMPIYEPGLDALVASNVKAGRLSFTT 76 (446)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTT------------TCCSSCCTTHHHHHHHHHHTTCEEEES
T ss_pred EEEc---CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhc------------CCCCccCCCHHHHHHhhcccCCEEEEC
Confidence 4565 7999999999999999999999999988765543 11111111111 235688899
Q ss_pred chHhhcccCcEEEEccccchH---------HHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccC----CCCCcEEE
Q psy17416 188 VLRECLEDAIFIQESVPEILQ---------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHS----THRSQFIV 251 (290)
Q Consensus 188 ~l~~~l~~aDlVieavpe~~~---------~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~----~~~~r~ig 251 (290)
|+.+++++||+||.|||.+.+ ..+++++++.+.++++++++. .|++++. ++...+ ...+-.+.
T Consensus 77 d~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~-~STv~pgtt~~l~~~l~e~~~~~d~~v~ 155 (446)
T 4a7p_A 77 DLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVT-KSTVPVGTGDEVERIIAEVAPNSGAKVV 155 (446)
T ss_dssp CHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEE-CSCCCTTHHHHHHHHHHHHSTTSCCEEE
T ss_pred CHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCCCchHHHHHHHHHHHhCCCCCceEE
Confidence 998899999999999887753 367788899999999998874 3344433 222211 11111222
Q ss_pred ecc--CCCCCC-----CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 252 AHP--VNPPYF-----IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 252 ~Hf--~~p~~~-----~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.-| ..+... .+---++.+ .++++.+++.++++.+++
T Consensus 156 ~~Pe~a~eG~a~~d~~~p~~ivvG~--~~~~~~~~~~~ly~~~~~ 198 (446)
T 4a7p_A 156 SNPEFLREGAAIEDFKRPDRVVVGT--EDEFARQVMREIYRPLSL 198 (446)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEEC--SCHHHHHHHHHHHCSCC-
T ss_pred eCcccccccchhhhccCCCEEEEeC--CcHHHHHHHHHHHHHHhc
Confidence 221 111110 000113333 357889999999987765
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=81.11 Aligned_cols=155 Identities=9% Similarity=0.081 Sum_probs=95.0
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHH-HHHHH-HHHHHH-HHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAK-NTIQHT-LQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~-l~~a~-~~i~~~-~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
.-||++ +|.||..+|..+++.|++|.+||++++. +.++. ....+. +..+.+. ... ....++
T Consensus 21 kIgiIG---~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~ 84 (245)
T 3dtt_A 21 KIAVLG---TGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE------------HPH-VHLAAF 84 (245)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGG------------STT-CEEEEH
T ss_pred eEEEEC---CCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh------------cCc-eeccCH
Confidence 346676 8999999999999999999999999985 11111 100000 0111100 011 124677
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHH-hhhCCCCcEEEeCCCC----------------cCH-HHHhccCCCCCcEE-
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAI-DIFMSSNTILSSSTSS----------------FLP-SVLSEHSTHRSQFI- 250 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l-~~~~~~~~ii~s~ts~----------------~~~-~~la~~~~~~~r~i- 250 (290)
.+++++||+||.|+|.+.. .+++.++ .+.+ ++++|++.+.+ ..+ +.+++.++. .+++
T Consensus 85 ~e~~~~aDvVilavp~~~~--~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~ 160 (245)
T 3dtt_A 85 ADVAAGAELVVNATEGASS--IAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVK 160 (245)
T ss_dssp HHHHHHCSEEEECSCGGGH--HHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEE
T ss_pred HHHHhcCCEEEEccCcHHH--HHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEE
Confidence 7788999999999997763 3666777 6666 77777755522 133 345555542 4555
Q ss_pred EeccCCCCC--------CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 251 VAHPVNPPY--------FIPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 251 g~Hf~~p~~--------~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
|+++...+. ..++.-++.+. +++..+++.++++.+|+
T Consensus 161 ~~~~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~ 205 (245)
T 3dtt_A 161 TLNTMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGH 205 (245)
T ss_dssp CSTTSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTC
T ss_pred eecccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCC
Confidence 455422111 12233344443 78999999999999995
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-08 Score=94.13 Aligned_cols=148 Identities=11% Similarity=0.128 Sum_probs=100.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+++.|++|.+||++++..++..+ .+.. + .++..+.++++++
T Consensus 7 IgiIG---lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~-g--------~~i~~~~s~~e~v 63 (484)
T 4gwg_A 7 IALIG---LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAK-G--------TKVVGAQSLKEMV 63 (484)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTT-T--------SSCEECSSHHHHH
T ss_pred EEEEC---hhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccC-C--------CceeccCCHHHHH
Confidence 46776 8999999999999999999999999998776554 1111 0 1334457777766
Q ss_pred c---cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCcEEEeccCCCC---CCCCeE
Q psy17416 194 E---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPP---YFIPLV 264 (290)
Q Consensus 194 ~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r~ig~Hf~~p~---~~~~lv 264 (290)
+ ++|+||.++|....+ ..++.++.+.++++.+|+..+++.+.+ .++..+. .-.+|++.-....+ ...+ .
T Consensus 64 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~ 141 (484)
T 4gwg_A 64 SKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-S 141 (484)
T ss_dssp HTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-E
T ss_pred hhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-e
Confidence 5 599999999987554 456789999999999988655555432 3333332 22345554221100 0112 2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-++.| ++++++++.++++.+|.
T Consensus 142 im~GG---~~ea~~~v~pll~~ig~ 163 (484)
T 4gwg_A 142 LMPGG---NKEAWPHIKTIFQGIAA 163 (484)
T ss_dssp EEEEE---CGGGHHHHHHHHHHHSC
T ss_pred eecCC---CHHHHHHHHHHHHHhcC
Confidence 24444 68999999999999986
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.3e-08 Score=91.55 Aligned_cols=151 Identities=20% Similarity=0.164 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhh------hcccccCCchHhhccc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ------FGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~------~~~i~~~~~l~~~l~~ 195 (290)
+|.||..+|..+++.|++|.++|++++.++...+ .+.........+. .++++.++++++++++
T Consensus 8 ~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~-----------~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~ 76 (436)
T 1mv8_A 8 LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ-----------GKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD 76 (436)
T ss_dssp CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhC-----------CCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhcc
Confidence 7999999999999999999999999988765443 1111110001111 2357778899888999
Q ss_pred CcEEEEccccchH---------HHHHHHHHHhhhCCC---CcEEEeCCCCcCHH----HHhccCCC--C-----CcEEEe
Q psy17416 196 AIFIQESVPEILQ---------IKHQVYRAIDIFMSS---NTILSSSTSSFLPS----VLSEHSTH--R-----SQFIVA 252 (290)
Q Consensus 196 aDlVieavpe~~~---------~k~~~~~~l~~~~~~---~~ii~s~ts~~~~~----~la~~~~~--~-----~r~ig~ 252 (290)
||+||.|+|.+.. + .++++++.+.+++ +++++. .|+.++. .+...+.. . .-.+.
T Consensus 77 aDvviiaVptp~~~~~~~dl~~v-~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~- 153 (436)
T 1mv8_A 77 SDVSFICVGTPSKKNGDLDLGYI-ETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG- 153 (436)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHH-HHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE-
T ss_pred CCEEEEEcCCCcccCCCcchHHH-HHHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCCcEEEE-
Confidence 9999999998764 4 3567889888888 887763 3333322 22222211 1 11122
Q ss_pred ccCCCCCCCCeE---------EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 253 HPVNPPYFIPLV---------EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 253 Hf~~p~~~~~lv---------Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++|....+-. .++.|. ++++..+++.++++.+|+
T Consensus 154 --~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~ 196 (436)
T 1mv8_A 154 --TNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDA 196 (436)
T ss_dssp --ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSS
T ss_pred --ECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCC
Confidence 2333333211 234443 368899999999998875
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=88.26 Aligned_cols=147 Identities=15% Similarity=0.157 Sum_probs=101.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+++.|++|.+||++++.+++..+.. + + .++..++++++++
T Consensus 8 IgvIG---~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~----------~---~--------~gi~~~~s~~e~v 63 (474)
T 2iz1_A 8 FGVVG---MAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH----------Q---D--------KNLVFTKTLEEFV 63 (474)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT----------T---T--------SCEEECSSHHHHH
T ss_pred EEEEe---eHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC----------c---C--------CCeEEeCCHHHHH
Confidence 45665 799999999999999999999999998877655411 0 0 1344567888777
Q ss_pred cc---CcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCC-CCcEEEeccCCCCC---CCCeE
Q psy17416 194 ED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPVNPPY---FIPLV 264 (290)
Q Consensus 194 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~-~~r~ig~Hf~~p~~---~~~lv 264 (290)
++ +|+||.|+|....++ .+++++.+.++++++|++.+++.. ...+.+.+.. ..+|+++....++. ..+.
T Consensus 64 ~~l~~aDvVilavp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~- 141 (474)
T 2iz1_A 64 GSLEKPRRIMLMVQAGAATD-ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPS- 141 (474)
T ss_dssp HTBCSSCEEEECCCTTHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCC-
T ss_pred hhccCCCEEEEEccCchHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCe-
Confidence 66 999999999865543 566889999999998886555553 3456555543 23555543221110 1111
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++++. +++.++++.++++.+|+
T Consensus 142 -i~~gg--~~~~~~~v~~ll~~~g~ 163 (474)
T 2iz1_A 142 -MMPGG--QKEAYDLVAPIFEQIAA 163 (474)
T ss_dssp -EEEEE--CHHHHHHHHHHHHHHSC
T ss_pred -EEecC--CHHHHHHHHHHHHHHhc
Confidence 23332 78999999999999886
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-08 Score=90.78 Aligned_cols=106 Identities=17% Similarity=0.058 Sum_probs=77.4
Q ss_pred eeEEecccchhHHHHHHHHHHcC-------ceeEEecCCHH-----HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG-------YKVSLYDVLSE-----QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G-------~~V~l~d~~~e-----~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 182 (290)
++++ +|.||..+|..+++.| ++|.+||++++ .++...+ .+.....++......+
T Consensus 25 ~iIG---aG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~ 90 (375)
T 1yj8_A 25 SILG---SGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINN-----------KHENTKYLKGVPLPHN 90 (375)
T ss_dssp EEEC---CSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHH-----------HCBCTTTSTTCBCCTT
T ss_pred EEEC---cCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHh-----------cCcccccCCcccCcCC
Confidence 4555 7999999999999999 99999999987 4433222 1211111111112245
Q ss_pred cccCCchHhhcccCcEEEEccccchHHHHHHHHHHhh----hCCCCcEEEeCCCCcCH
Q psy17416 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI----FMSSNTILSSSTSSFLP 236 (290)
Q Consensus 183 i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~----~~~~~~ii~s~ts~~~~ 236 (290)
+..+++++++++++|+||.|+|.. ...++++++.+ .+++++++++.++++.+
T Consensus 91 i~~~~~~~ea~~~aDvVilav~~~--~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~ 146 (375)
T 1yj8_A 91 IVAHSDLASVINDADLLIFIVPCQ--YLESVLASIKESESIKIASHAKAISLTKGFIV 146 (375)
T ss_dssp EEEESSTHHHHTTCSEEEECCCHH--HHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred eEEECCHHHHHcCCCEEEEcCCHH--HHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence 666788888889999999999964 58899999998 89999999988877655
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-07 Score=85.73 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=98.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hhh------hcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EEQ------FGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~~------~~~i~~~~~l~~~l~ 194 (290)
+|.||..+|..+++.|++|++||++++.++...+ |...-..+. .+. .++++++++++++++
T Consensus 10 ~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~------------g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~ 77 (450)
T 3gg2_A 10 IGYVGLVSATCFAELGANVRCIDTDRNKIEQLNS------------GTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP 77 (450)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH------------TCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG
T ss_pred cCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHc------------CCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh
Confidence 7999999999999999999999999988776544 111100111 111 356788899999899
Q ss_pred cCcEEEEccccchH--------HHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCC-----C---CCcEEEeccC
Q psy17416 195 DAIFIQESVPEILQ--------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHST-----H---RSQFIVAHPV 255 (290)
Q Consensus 195 ~aDlVieavpe~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~-----~---~~r~ig~Hf~ 255 (290)
+||+||.|+|.+.+ ...++++++.+.++++++++..+ ++++. ++...+. . .+-.+. +
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~---~ 153 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIA---S 153 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEE---E
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEE---e
Confidence 99999999998742 56788899999999999887433 34332 3322211 0 111122 2
Q ss_pred CCCCCCC--e--------EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 256 NPPYFIP--L--------VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 256 ~p~~~~~--l--------vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+|.+..+ . --++.+ .+++..+++.++++.+++
T Consensus 154 ~Pe~a~eG~~~~~~~~p~~ivvG~--~~~~~~~~~~~l~~~~~~ 195 (450)
T 3gg2_A 154 NPEFLKEGNAIDDFMKPDRVVVGV--DSDRARELITSLYKPMLL 195 (450)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTTCC
T ss_pred chhhhcccchhhhccCCCEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 2332222 1 113333 268899999999998875
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-07 Score=86.28 Aligned_cols=147 Identities=14% Similarity=0.230 Sum_probs=95.5
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH----HHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI----QHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i----~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
++++ +|.||..+|..+++ |++|++||++++.++...+.. +..++.++..+ ..++++++|++
T Consensus 40 aVIG---lG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~-----------~~~l~~ttd~~ 104 (432)
T 3pid_A 40 TISG---TGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK-----------PLNFRATTDKH 104 (432)
T ss_dssp EEEC---CSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-----------CCCEEEESCHH
T ss_pred EEEC---cCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc-----------cCCeEEEcCHH
Confidence 4555 79999999999998 999999999999887655410 00111111100 13678889998
Q ss_pred hhcccCcEEEEccccchH---------HHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCC
Q psy17416 191 ECLEDAIFIQESVPEILQ---------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPP 258 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~---------~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~ 258 (290)
+++++||+||+|+|++.+ .-..+.+.+.+ ++++++++ ..|++++. ++...+.. +.+. |+|.
T Consensus 105 ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~~--~~v~---~sPe 177 (432)
T 3pid_A 105 DAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLGI--DNVI---FSPE 177 (432)
T ss_dssp HHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHTC--CCEE---ECCC
T ss_pred HHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHhh--ccEe---ecCc
Confidence 899999999999999852 34566788888 88998876 34444433 44444432 2222 2555
Q ss_pred CCCC-------e---EEEecCCCCCHHHHHHHHHHHHH
Q psy17416 259 YFIP-------L---VEIVPAAWTSERVITRTREIMTE 286 (290)
Q Consensus 259 ~~~~-------l---vEvv~~~~t~~e~~~~~~~~~~~ 286 (290)
...+ + --|+.+ +++..+++..++..
T Consensus 178 ~~~~G~A~~~~l~p~rIvvG~---~~~~~~~~~~ll~~ 212 (432)
T 3pid_A 178 FLREGRALYDNLHPSRIVIGE---RSARAERFADLLKE 212 (432)
T ss_dssp CCCTTSHHHHHHSCSCEEESS---CSHHHHHHHHHHHH
T ss_pred cCCcchhhhcccCCceEEecC---CHHHHHHHHHHHHh
Confidence 4433 0 124444 45677888888875
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.5e-08 Score=92.22 Aligned_cols=160 Identities=11% Similarity=0.048 Sum_probs=99.6
Q ss_pred eeEEecccchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhh-----cccccCC
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQF-----GLISGTP 187 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~-----~~i~~~~ 187 (290)
|+++ +|.||..+|..++.. |++|++||++++.++...+ .+.........+.. .++++++
T Consensus 9 ~VIG---~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~-----------g~~~i~e~~l~~~~~~~~~~~~~~t~ 74 (467)
T 2q3e_A 9 CCIG---AGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS-----------PTLPIYEPGLKEVVESCRGKNLFFST 74 (467)
T ss_dssp EEEC---CSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS-----------SSCSSCCTTHHHHHHHHBTTTEEEES
T ss_pred EEEC---CCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhC-----------CCCCcCCCCHHHHHHHhhcCCEEEEC
Confidence 4555 799999999999998 8999999999987765432 11111000001111 3567788
Q ss_pred chHhhcccCcEEEEccccchHH-------------HHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCC-CcEE
Q psy17416 188 VLRECLEDAIFIQESVPEILQI-------------KHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHR-SQFI 250 (290)
Q Consensus 188 ~l~~~l~~aDlVieavpe~~~~-------------k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~-~r~i 250 (290)
++++++++||+||.|+|..... ....++++.+.++++++++ +.|+.++. +++..+... ..++
T Consensus 75 ~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~g~~~~l~~~l~~~~~~~~ 153 (467)
T 2q3e_A 75 NIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT-EKSTVPVRAAESIRRIFDANTKPNL 153 (467)
T ss_dssp CHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEE-ECSCCCTTHHHHHHHHHHHTCCTTC
T ss_pred CHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEE-ECCcCCchHHHHHHHHHHHhCCCCC
Confidence 9888899999999999876643 2567788888899998876 33333332 333322211 0011
Q ss_pred Eec-cCCCCCCCCeE----------EEecCCC--CCHHHHHHHHHHHHHc-CC
Q psy17416 251 VAH-PVNPPYFIPLV----------EIVPAAW--TSERVITRTREIMTEI-GM 289 (290)
Q Consensus 251 g~H-f~~p~~~~~lv----------Evv~~~~--t~~e~~~~~~~~~~~l-gk 289 (290)
..+ .++|....+-. -++.++. ++++..+++.++++.+ |+
T Consensus 154 d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~ 206 (467)
T 2q3e_A 154 NLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPR 206 (467)
T ss_dssp EEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCG
T ss_pred CeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccC
Confidence 111 24444443322 2355544 4788999999999988 53
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-08 Score=86.10 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=91.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..++..+.. |++|.+||++++..++..+. |. ..++ +++++.
T Consensus 5 ~iiG---~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-----------g~--------------~~~~-~~~~~~ 54 (289)
T 2cvz_A 5 AFIG---LGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-----------FG--------------SEAV-PLERVA 54 (289)
T ss_dssp EEEC---CSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-----------HC--------------CEEC-CGGGGG
T ss_pred EEEc---ccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-----------CC--------------cccC-HHHHHh
Confidence 4554 79999999999999 99999999999877654431 11 1123 556678
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe--CCCCcCHHHHhccCCCC-CcEEEeccCCCCC---CCCeEEEec
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS--STSSFLPSVLSEHSTHR-SQFIVAHPVNPPY---FIPLVEIVP 268 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s--~ts~~~~~~la~~~~~~-~r~ig~Hf~~p~~---~~~lvEvv~ 268 (290)
++|+||.|+|.+..++ .+++++.+.++++++++. +.+......+.+.+... .+++....+.++. ...+..++.
T Consensus 55 ~~D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~ 133 (289)
T 2cvz_A 55 EARVIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLG 133 (289)
T ss_dssp GCSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEE
T ss_pred CCCEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEEC
Confidence 9999999999876554 466888888999998873 33333344565554332 2444432111110 112344454
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy17416 269 AAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lgk 289 (290)
+ +++.++++.+++ .+|+
T Consensus 134 ~---~~~~~~~~~~ll-~~g~ 150 (289)
T 2cvz_A 134 G---PEEAVERVRPFL-AYAK 150 (289)
T ss_dssp S---CHHHHHHHGGGC-TTEE
T ss_pred C---CHHHHHHHHHHH-hhcC
Confidence 3 788999999988 8775
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=80.61 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=89.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+.+.|++|.+||++++ ++
T Consensus 22 I~iiG---~G~mG~~la~~l~~~g~~V~~~~~~~~-------------------------------------------~~ 55 (209)
T 2raf_A 22 ITIFG---KGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------------------------------------AT 55 (209)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCEEEEECTTCC-------------------------------------------CS
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------------------Hh
Confidence 34555 799999999999999999999998764 25
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC---------------HHHHhccCCCCCcEEE-eccCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---------------PSVLSEHSTHRSQFIV-AHPVNP 257 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---------------~~~la~~~~~~~r~ig-~Hf~~p 257 (290)
++||+||.|+| ....+++++++.+.++ ++++++.+++++ ...+++.++ ..+++. .|+...
T Consensus 56 ~~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~ 131 (209)
T 2raf_A 56 TLGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFA 131 (209)
T ss_dssp SCCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCH
T ss_pred ccCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccH
Confidence 68999999999 3345688888888888 888887777665 345555554 357877 665432
Q ss_pred CCC--------CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 258 PYF--------IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 258 ~~~--------~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
|.. .+..-++.+ .+++..+++.++++.+|.
T Consensus 132 p~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~ 169 (209)
T 2raf_A 132 ATLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPL 169 (209)
T ss_dssp HHHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSC
T ss_pred hhccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCC
Confidence 211 122223333 467899999999999885
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=85.81 Aligned_cols=106 Identities=15% Similarity=0.064 Sum_probs=77.2
Q ss_pred eeeEEecccchhHHHHHHHHHHcC-------ceeEEecCCHH-----HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAG-------YKVSLYDVLSE-----QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFG 181 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G-------~~V~l~d~~~e-----~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 181 (290)
-++++ +|.||..+|..+++.| ++|.+||++++ ..+...+ .+......+......
T Consensus 11 I~iIG---~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~ 76 (354)
T 1x0v_A 11 VCIVG---SGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINT-----------QHENVKYLPGHKLPP 76 (354)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHH-----------HSCCTTTSTTCCCCT
T ss_pred EEEEC---CCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHh-----------cCcccccCCcccCcc
Confidence 34565 7999999999999988 99999999987 5443322 111111011111123
Q ss_pred ccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC
Q psy17416 182 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 235 (290)
Q Consensus 182 ~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 235 (290)
++..++++++++++||+||.|+|.+. ..++++++.+.+++++++++.++++.
T Consensus 77 ~~~~~~~~~~~~~~aD~Vilav~~~~--~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 77 NVVAVPDVVQAAEDADILIFVVPHQF--IGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp TEEEESSHHHHHTTCSEEEECCCGGG--HHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred CeEEEcCHHHHHcCCCEEEEeCCHHH--HHHHHHHHHhhCCCCCEEEEECCccC
Confidence 45667788888899999999999754 78999999999999999998887775
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-07 Score=79.92 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=87.0
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecC--CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDV--LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~--~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
||++ +|.||..++..+.+.|++|.++|+ +++.+++..+ .| +. ++++++
T Consensus 4 ~iIG---~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~-----------~g--------------~~--~~~~~~ 53 (264)
T 1i36_A 4 GFIG---FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----------VG--------------VT--ETSEED 53 (264)
T ss_dssp EEES---CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----------HT--------------CE--ECCHHH
T ss_pred EEEe---chHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-----------CC--------------Cc--CCHHHH
Confidence 5565 799999999999999999999998 6666544322 11 11 455667
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH---HHHhccCCCCCcEEEeccCCCCC---CCCeEEE
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP---SVLSEHSTHRSQFIVAHPVNPPY---FIPLVEI 266 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~la~~~~~~~r~ig~Hf~~p~~---~~~lvEv 266 (290)
++++|+||.|+|.+...+. +.++.+.+++ ++++ .|+... ..+++.+.... +++.+++.++. ...+ .+
T Consensus 54 ~~~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~-~s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~ 126 (264)
T 1i36_A 54 VYSCPVVISAVTPGVALGA--ARRAGRHVRG--IYVD-INNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-II 126 (264)
T ss_dssp HHTSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEE-CSCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EE
T ss_pred HhcCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEE-ccCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EE
Confidence 8899999999998765543 4567777776 4443 344433 35666665544 77766665543 1233 45
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++++.. +++.+ ++.+|+
T Consensus 127 ~~g~~~-----~~~~~-l~~~g~ 143 (264)
T 1i36_A 127 ASGRDA-----EEFMK-LNRYGL 143 (264)
T ss_dssp EESTTH-----HHHHG-GGGGTC
T ss_pred ecCCcH-----HHhhh-HHHcCC
Confidence 555432 66777 888886
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.9e-08 Score=86.51 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=76.9
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.||..++..++..|+ +|.++|++++....+++..+ . .. .+++.++|+ +++++||+|
T Consensus 22 aG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~-----~------~~--------~~i~~t~d~-~~l~~aD~V 81 (303)
T 2i6t_A 22 GGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI-----F------NL--------PNVEISKDL-SASAHSKVV 81 (303)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH-----H------TC--------TTEEEESCG-GGGTTCSEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh-----h------cC--------CCeEEeCCH-HHHCCCCEE
Confidence 68999999999999998 99999999873334443221 0 00 245566788 579999999
Q ss_pred EEcc-------------ccchHHHHHHHHHHhhhCCCCcEE--EeCCCCcCHHHHhccCCC-CCcEEEe
Q psy17416 200 QESV-------------PEILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHSTH-RSQFIVA 252 (290)
Q Consensus 200 ieav-------------pe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~la~~~~~-~~r~ig~ 252 (290)
|+++ .++..+++++++++.+++ +++++ +||.+..-...+...... |.|++|+
T Consensus 82 i~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~ 149 (303)
T 2i6t_A 82 IFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI 149 (303)
T ss_dssp EECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred EEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence 9997 999999999999999998 55554 577555333233233233 6799998
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.2e-07 Score=85.77 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=100.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||..+|..+++.|++|.+||++++.+++..+. .|.. + . ..++..+++++++++
T Consensus 5 gVIG---~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~g~~--~-~----~~~i~~~~~~~e~v~ 64 (478)
T 1pgj_A 5 GVVG---LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA----------NASA--P-F----AGNLKAFETMEAFAA 64 (478)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TTTS--T-T----GGGEEECSCHHHHHH
T ss_pred EEEC---hHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCC--C-C----CCCeEEECCHHHHHh
Confidence 5565 79999999999999999999999999887765541 1211 0 0 123556778887766
Q ss_pred ---cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCC-CCcEEEeccCCCCC---CCCeEE
Q psy17416 195 ---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPVNPPY---FIPLVE 265 (290)
Q Consensus 195 ---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~-~~r~ig~Hf~~p~~---~~~lvE 265 (290)
++|+||.|+|....+ ..+++++.+.++++++|++.+++.. ...+.+.+.. ..+|+++....++. ..+ .-
T Consensus 65 ~l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i 142 (478)
T 1pgj_A 65 SLKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AF 142 (478)
T ss_dssp HBCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EE
T ss_pred cccCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eE
Confidence 499999999986544 4566889899999998886555553 2345544432 34555543322111 112 11
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++.+ +++..+++.++++.+|+
T Consensus 143 ~~gg---~~~~~~~v~~ll~~~g~ 163 (478)
T 1pgj_A 143 FPGG---TLSVWEEIRPIVEAAAA 163 (478)
T ss_dssp EEEE---CHHHHHHHHHHHHHHSC
T ss_pred eccC---CHHHHHHHHHHHHHhcc
Confidence 3333 68899999999999886
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.51 E-value=7.3e-08 Score=87.99 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=87.3
Q ss_pred ceeeEEecccchhHHHHHHHHH-HcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~-~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
.-|+++ +|.||..+|..+. ..|++|..||++++..+.+.+ . ++.+.+++++
T Consensus 165 ~vgIIG---~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~-----------~--------------g~~~~~~l~e 216 (348)
T 2w2k_A 165 VLGAVG---LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-----------L--------------GAERVDSLEE 216 (348)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-----------H--------------TCEECSSHHH
T ss_pred EEEEEE---ECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-----------c--------------CcEEeCCHHH
Confidence 445565 7999999999998 899999999998765443221 1 1123357888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccCCCC-------CCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPVNPP-------YFI 261 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~~p~-------~~~ 261 (290)
.+++||+|+.++|.+.+.+.-+.+++.+.++++++|+..+++ .....+.+.+.. .....|+++|.+. +..
T Consensus 217 ll~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~ 296 (348)
T 2w2k_A 217 LARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEM 296 (348)
T ss_dssp HHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTS
T ss_pred HhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcC
Confidence 889999999999988766554445666789999988743333 333466666643 2234688988742 123
Q ss_pred CeEEEecC
Q psy17416 262 PLVEIVPA 269 (290)
Q Consensus 262 ~lvEvv~~ 269 (290)
+.|-++|+
T Consensus 297 ~nviltPH 304 (348)
T 2w2k_A 297 KHVTLTTH 304 (348)
T ss_dssp SSEEECCS
T ss_pred CCEEEcCc
Confidence 45556665
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.48 E-value=8.1e-08 Score=87.05 Aligned_cols=116 Identities=16% Similarity=0.036 Sum_probs=79.5
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+...|++|..||++++..+.+.+ . ++... ++++.+
T Consensus 158 vgIIG---~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~--------------g~~~~-~l~e~l 208 (330)
T 2gcg_A 158 VGIIG---LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE-----------F--------------QAEFV-STPELA 208 (330)
T ss_dssp EEEEC---CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHT-----------T--------------TCEEC-CHHHHH
T ss_pred EEEEC---cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHh-----------c--------------CceeC-CHHHHH
Confidence 45554 7999999999999999999999988754332211 0 12223 777888
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCC-CCCcEEEeccCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHST-HRSQFIVAHPVNPP 258 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~-~~~r~ig~Hf~~p~ 258 (290)
++||+|+.++|.+.+.+.-+.+++.+.++++++++..+++ .....+.+.+. ......|+++|.+.
T Consensus 209 ~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e 276 (330)
T 2gcg_A 209 AQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 276 (330)
T ss_dssp HHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred hhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence 9999999999987654443435566788999988743333 33356666554 23455788887664
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.1e-07 Score=85.36 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=99.4
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+++.|++|.+||++++.+++..+. . ..+ .++..++++++++
T Consensus 5 IgvIG---~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~--~~g--------~gi~~~~~~~e~v 61 (482)
T 2pgd_A 5 IALIG---LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN----------E--AKG--------TKVLGAHSLEEMV 61 (482)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT----------T--TTT--------SSCEECSSHHHHH
T ss_pred EEEEC---hHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----------c--ccC--------CCeEEeCCHHHHH
Confidence 35665 79999999999999999999999999887655431 0 000 1344567888766
Q ss_pred ---ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCC-CCCcEEEeccCCCCC---CCCeE
Q psy17416 194 ---EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHST-HRSQFIVAHPVNPPY---FIPLV 264 (290)
Q Consensus 194 ---~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~-~~~r~ig~Hf~~p~~---~~~lv 264 (290)
+++|+||.|+|....+ ..++.++.+.++++++|++.+++... ..+.+.+. ...+|+++..+.++. ..+.+
T Consensus 62 ~~l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i 140 (482)
T 2pgd_A 62 SKLKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSL 140 (482)
T ss_dssp HHBCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEE
T ss_pred hhccCCCEEEEeCCChHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeE
Confidence 4899999999987554 35667898999999888866555543 24444332 234566553322211 11122
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++.+ +++..+++.++++.+|+
T Consensus 141 -~~gg---~~e~~~~v~~ll~~~g~ 161 (482)
T 2pgd_A 141 -MPGG---NKEAWPHIKAIFQGIAA 161 (482)
T ss_dssp -EEEE---CTTTHHHHHHHHHHHSC
T ss_pred -EeCC---CHHHHHHHHHHHHHhhh
Confidence 3333 57788999999999886
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.6e-07 Score=86.65 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=95.7
Q ss_pred eeEEecccchhHHHHHHHHHHc-Cc-eeEEecCCHH----HHHHHHHHHHHHHHHHHHcCCCCC--CCCh-hh------h
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GY-KVSLYDVLSE----QIENAKNTIQHTLQDYHQKGCLKG--SLSP-EE------Q 179 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~-~V~l~d~~~e----~l~~a~~~i~~~~~~~~~~g~~~~--~~~~-~~------~ 179 (290)
++++ +|.||..+|..++.. |+ +|++||++++ .++...+ |...- ..+. .+ .
T Consensus 22 aVIG---lG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~------------g~~~i~~~e~gl~~l~~~~~~ 86 (478)
T 3g79_A 22 GVLG---MGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNR------------GESPLKGEEPGLEELIGKVVK 86 (478)
T ss_dssp EEEC---CSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTT------------TCCCSSCCGGGHHHHHHHHHH
T ss_pred EEEC---cCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHh------------cCCCccccCCCHHHHHHhhcc
Confidence 4555 899999999999999 99 9999999998 6655433 11000 0000 01 1
Q ss_pred hcccccCCchHhhcccCcEEEEccccch----------HHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhc-----
Q psy17416 180 FGLISGTPVLRECLEDAIFIQESVPEIL----------QIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSE----- 241 (290)
Q Consensus 180 ~~~i~~~~~l~~~l~~aDlVieavpe~~----------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~----- 241 (290)
.+++.++++ .+++++||+||+|||.+. .......+.+.+.++++++++ +.|++++. +++.
T Consensus 87 ~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~ 164 (478)
T 3g79_A 87 AGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEE 164 (478)
T ss_dssp TTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHH
T ss_pred cCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHH
Confidence 356788888 568999999999999874 223556678999999999876 44444433 2221
Q ss_pred cCCCC--Cc-EEEeccCCCCCCCC----------eEEEecCCCCCHHHHHHHHHHHHHc-CC
Q psy17416 242 HSTHR--SQ-FIVAHPVNPPYFIP----------LVEIVPAAWTSERVITRTREIMTEI-GM 289 (290)
Q Consensus 242 ~~~~~--~r-~ig~Hf~~p~~~~~----------lvEvv~~~~t~~e~~~~~~~~~~~l-gk 289 (290)
..... .. .+. ++|.+..+ .--|+.+ +++..+++.++++.+ ++
T Consensus 165 ~~g~~~~~d~~v~---~~Pe~~~~G~a~~~~~~~~~Iv~G~---~~~~~~~~~~ly~~~~~~ 220 (478)
T 3g79_A 165 ESGLKAGEDFALA---HAPERVMVGRLLKNIREHDRIVGGI---DEASTKRAVELYSPVLTV 220 (478)
T ss_dssp HHCCCBTTTBEEE---ECCCCCCTTSHHHHHHHSCEEEEES---SHHHHHHHHHHHGGGCSS
T ss_pred hcCCCcCCceeEE---eCCccCCccchhhhhcCCcEEEEeC---CHHHHHHHHHHHhhhccC
Confidence 11110 11 111 33433222 0113433 678889999999988 54
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-07 Score=85.32 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=77.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..+|..+++.|++|.+||++++.++...+. +......+......++..++++.+++
T Consensus 18 I~iIG---~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (366)
T 1evy_A 18 AVVFG---SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK-----------RENVLFLKGVQLASNITFTSDVEKAY 83 (366)
T ss_dssp EEEEC---CSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH-----------TBCTTTSTTCBCCTTEEEESCHHHHH
T ss_pred EEEEC---CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------CcccccccccccccceeeeCCHHHHH
Confidence 45665 79999999999999999999999999877655441 11100011111123455667888888
Q ss_pred ccCcEEEEccccchHHHHHHHHH----HhhhCCC-CcEEEeCCCCcCH
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRA----IDIFMSS-NTILSSSTSSFLP 236 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~----l~~~~~~-~~ii~s~ts~~~~ 236 (290)
.++|+||.|+|. ....+++.+ +.+.+++ ++++++.++++.+
T Consensus 84 ~~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~ 129 (366)
T 1evy_A 84 NGAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER 129 (366)
T ss_dssp TTCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred cCCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence 999999999996 346788888 8888888 8888877766655
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-06 Score=81.68 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=94.9
Q ss_pred cchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhh-----hcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ-----FGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~-----~~~i~~~~~l~~~l~ 194 (290)
+|.||..+|..++.. |++|++||++++.++...+ .+.........+. ..++++++++.++++
T Consensus 17 ~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~-----------g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~ 85 (481)
T 2o3j_A 17 AGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNS-----------DKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIA 85 (481)
T ss_dssp CSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS-----------SSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHC-----------CCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhh
Confidence 799999999999988 7999999999988765433 1111000000111 135677889878899
Q ss_pred cCcEEEEccccchH-------------HHHHHHHHHhhhCCCCcEEEeCCCCcCH--H-HHhccCCC-------CCcEEE
Q psy17416 195 DAIFIQESVPEILQ-------------IKHQVYRAIDIFMSSNTILSSSTSSFLP--S-VLSEHSTH-------RSQFIV 251 (290)
Q Consensus 195 ~aDlVieavpe~~~-------------~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~-~la~~~~~-------~~r~ig 251 (290)
+||+||.|+|.... ...++++++.+.++++++|+. .|+.++ + +++..+.. .+-++.
T Consensus 86 ~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~ 164 (481)
T 2o3j_A 86 EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQKNNENLKFQVL 164 (481)
T ss_dssp HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence 99999999987542 356778899999999998873 333332 2 23222211 112344
Q ss_pred eccC--CCCC-----CCCeEEEecCCCC--CHHHHHHHHHHHHHcCC
Q psy17416 252 AHPV--NPPY-----FIPLVEIVPAAWT--SERVITRTREIMTEIGM 289 (290)
Q Consensus 252 ~Hf~--~p~~-----~~~lvEvv~~~~t--~~e~~~~~~~~~~~lgk 289 (290)
.+|- .|.. ..+---++.+... ++++.+++.++++.+|+
T Consensus 165 ~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~ 211 (481)
T 2o3j_A 165 SNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVP 211 (481)
T ss_dssp ECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred eCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcC
Confidence 4441 1111 0000113344322 23688999999998874
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-07 Score=89.46 Aligned_cols=146 Identities=20% Similarity=0.209 Sum_probs=94.9
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||.++|..+...|++|..||+++. .+++.+ .| +... +++++
T Consensus 144 ~vgIIG---~G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-----------~g--------------~~~~-~l~e~ 193 (529)
T 1ygy_A 144 TVGVVG---LGRIGQLVAQRIAAFGAYVVAYDPYVS-PARAAQ-----------LG--------------IELL-SLDDL 193 (529)
T ss_dssp EEEEEC---CSHHHHHHHHHHHTTTCEEEEECTTSC-HHHHHH-----------HT--------------CEEC-CHHHH
T ss_pred EEEEEe---eCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHh-----------cC--------------cEEc-CHHHH
Confidence 445665 799999999999999999999998763 222211 11 1122 67788
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH--HhccCCC-C-----CcEEEeccC--CCCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV--LSEHSTH-R-----SQFIVAHPV--NPPYFIP 262 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~--la~~~~~-~-----~r~ig~Hf~--~p~~~~~ 262 (290)
+++||+|+.|+|-....+.-+-+++.+.++++++++..+++-.+.+ +...+.. . -.|++.||. .|.+..+
T Consensus 194 ~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~ 273 (529)
T 1ygy_A 194 LARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELA 273 (529)
T ss_dssp HHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCT
T ss_pred HhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCC
Confidence 9999999999997643332222336667999999985545444443 4444422 1 135555653 2334456
Q ss_pred eEEEecCCC-CCHHHHHH-----HHHHHHHcC
Q psy17416 263 LVEIVPAAW-TSERVITR-----TREIMTEIG 288 (290)
Q Consensus 263 lvEvv~~~~-t~~e~~~~-----~~~~~~~lg 288 (290)
.+-++|+.. ++++..++ +..+++.++
T Consensus 274 ~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~ 305 (529)
T 1ygy_A 274 QVVVTPHLGASTAEAQDRAGTDVAESVRLALA 305 (529)
T ss_dssp TEEECSSCSSCBHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEccccCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 788999987 78888775 556665554
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=77.65 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=83.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..+++.|++|.+| ++++.++...+ .|.... ........++..++++++ +.++|+||.
T Consensus 27 aGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~-----------~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~D~vil 92 (318)
T 3hwr_A 27 AGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA-----------TGLRLE-TQSFDEQVKVSASSDPSA-VQGADLVLF 92 (318)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH-----------HCEEEE-CSSCEEEECCEEESCGGG-GTTCSEEEE
T ss_pred cCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh-----------CCeEEE-cCCCcEEEeeeeeCCHHH-cCCCCEEEE
Confidence 6999999999999999999999 88887765544 222111 011122234555677764 689999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCCCCCcEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTHRSQFIV 251 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~~~~r~ig 251 (290)
|+|... .+++++++.+.++++++|++.+.++... .+.+.++ .++++
T Consensus 93 avk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~ 139 (318)
T 3hwr_A 93 CVKSTD--TQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAA 139 (318)
T ss_dssp CCCGGG--HHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEE
T ss_pred Eccccc--HHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEE
Confidence 999874 5789999999999999999999999884 5555554 45554
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-07 Score=85.62 Aligned_cols=128 Identities=16% Similarity=0.092 Sum_probs=85.7
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||..+|..+...|++|..||++++. +.+.+ .| +.. .+++++
T Consensus 152 ~vgIIG---~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g--------------~~~-~~l~~~ 201 (334)
T 2dbq_A 152 TIGIIG---LGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERE-----------LN--------------AEF-KPLEDL 201 (334)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHH-----------HC--------------CEE-CCHHHH
T ss_pred EEEEEc---cCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhh-----------cC--------------ccc-CCHHHH
Confidence 345555 7999999999999999999999998865 32211 11 122 477788
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCcEEEeccCCCCC-------CCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY-------FIP 262 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r~ig~Hf~~p~~-------~~~ 262 (290)
+++||+|+.++|.+.+.+.-+.+++.+.++++++++..+.+..++ .+.+.+. .+-...|+++|.+.+ ..+
T Consensus 202 l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~ 281 (334)
T 2dbq_A 202 LRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLD 281 (334)
T ss_dssp HHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCT
T ss_pred HhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCC
Confidence 899999999999887654444356667889999887444443333 4555553 234457899887331 234
Q ss_pred eEEEecCC
Q psy17416 263 LVEIVPAA 270 (290)
Q Consensus 263 lvEvv~~~ 270 (290)
.|-++|+.
T Consensus 282 ~vi~tPh~ 289 (334)
T 2dbq_A 282 NVVLTPHI 289 (334)
T ss_dssp TEEECSSC
T ss_pred CEEECCcc
Confidence 55566653
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.3e-07 Score=83.49 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=92.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hhh------hcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EEQ------FGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~~------~~~i~~~~~l~~~l~ 194 (290)
+|.||..+|..+++.|++|++||++++.++...+ .+.... .+. .++ .+++.+++++ +
T Consensus 19 lGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~-----------g~~pi~-epgl~~ll~~~~~~g~l~~ttd~----~ 82 (431)
T 3ojo_A 19 LGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQN-----------GQISIE-EPGLQEVYEEVLSSGKLKVSTTP----E 82 (431)
T ss_dssp CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TCCSSC-CTTHHHHHHHHHHTTCEEEESSC----C
T ss_pred eCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC-----------CCCCcC-CCCHHHHHHhhcccCceEEeCch----h
Confidence 7999999999999999999999999998876554 111111 111 111 2567777763 5
Q ss_pred cCcEEEEccccchHH----------HHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhcc----CCC--CCc-EEEecc
Q psy17416 195 DAIFIQESVPEILQI----------KHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEH----STH--RSQ-FIVAHP 254 (290)
Q Consensus 195 ~aDlVieavpe~~~~----------k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~----~~~--~~r-~ig~Hf 254 (290)
+||+||.|||.+.+. -....+.+.+.++++++++ ..|+.++. ++... ... ... .+.
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~--- 158 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVIENLGFTIGEDIYLV--- 158 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEE---
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHHHHcCCCcCCCeEEE---
Confidence 899999999987632 3455678999999999776 34444443 22221 111 011 122
Q ss_pred CCCCCCCC----------eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 255 VNPPYFIP----------LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 255 ~~p~~~~~----------lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++|.+..+ .--|+.+ +++..+++.++++.+++
T Consensus 159 ~~Pe~~~~G~A~~~~~~p~~Iv~G~---~~~~~~~~~~ly~~~~~ 200 (431)
T 3ojo_A 159 HCPERVLPGKILEELVHNNRIIGGV---TKACIEAGKRVYRTFVQ 200 (431)
T ss_dssp ECCCCCCTTSHHHHHHHSCEEEEES---SHHHHHHHHHHHTTTCC
T ss_pred ECCCcCCCcchhhcccCCCEEEEeC---CHHHHHHHHHHHHHHhC
Confidence 23322211 0113433 68999999999999876
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-07 Score=84.16 Aligned_cols=126 Identities=15% Similarity=0.082 Sum_probs=82.7
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||+.+|..+...|++|..||++++. +.+.+ .| +.. .++++.
T Consensus 148 ~vgIIG---~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g--------------~~~-~~l~e~ 197 (333)
T 2d0i_A 148 KVGILG---MGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKE-----------LK--------------ARY-MDIDEL 197 (333)
T ss_dssp EEEEEC---CSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHH-----------HT--------------EEE-CCHHHH
T ss_pred EEEEEc---cCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-----------cC--------------cee-cCHHHH
Confidence 345555 7999999999999999999999998864 22211 11 122 367778
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEeccCC--CCC-----CCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVAHPVN--PPY-----FIP 262 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~Hf~~--p~~-----~~~ 262 (290)
+++||+|+.++|.+.+.+.-+-+++.+.++++ +++..+.+..+. .+...+.. .....|+++|. |+. ..+
T Consensus 198 l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~ 276 (333)
T 2d0i_A 198 LEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYE 276 (333)
T ss_dssp HHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCT
T ss_pred HhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCC
Confidence 89999999999988655444444556678889 775333333332 35555543 34668999988 532 234
Q ss_pred -eEEEecC
Q psy17416 263 -LVEIVPA 269 (290)
Q Consensus 263 -lvEvv~~ 269 (290)
.+-++|+
T Consensus 277 ~nviltPh 284 (333)
T 2d0i_A 277 WETVLTPH 284 (333)
T ss_dssp TTEEECCS
T ss_pred CCEEEcCc
Confidence 4555554
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-06 Score=77.49 Aligned_cols=149 Identities=14% Similarity=0.062 Sum_probs=92.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecC--CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC--chHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDV--LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP--VLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~--~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~--~l~~~l~~aD 197 (290)
+|.||..+|..+.+.|++|.+||+ +++.++...+ .|..... .... .++..++ ++.++++++|
T Consensus 8 ~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~--g~~~-~~~~~~~~~~~~~~~~~~D 73 (335)
T 1txg_A 8 AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA-----------GREHPRL--GVKL-NGVEIFWPEQLEKCLENAE 73 (335)
T ss_dssp CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT-----------TCCBTTT--TBCC-CSEEEECGGGHHHHHTTCS
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH-----------hCcCccc--Cccc-cceEEecHHhHHHHHhcCC
Confidence 799999999999999999999999 8887655433 2211000 0001 2234455 7777789999
Q ss_pred EEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc------CHHHHhccCCC--CCcEEEeccCCCCCC-----CCeE
Q psy17416 198 FIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF------LPSVLSEHSTH--RSQFIVAHPVNPPYF-----IPLV 264 (290)
Q Consensus 198 lVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~------~~~~la~~~~~--~~r~ig~Hf~~p~~~-----~~lv 264 (290)
+||.|+|... ..+++.++.+ +++++++++.+.++ ....+++.+.. +....+.....|... ....
T Consensus 74 ~vi~~v~~~~--~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~ 150 (335)
T 1txg_A 74 VVLLGVSTDG--VLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPT 150 (335)
T ss_dssp EEEECSCGGG--HHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCE
T ss_pred EEEEcCChHH--HHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCc
Confidence 9999999874 6788899999 99999888766565 22344443322 110000111222211 1111
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lg 288 (290)
.++.+. .+++..+++.++++..|
T Consensus 151 ~~~~~~-~~~~~~~~~~~ll~~~g 173 (335)
T 1txg_A 151 TVVFSS-PSESSANKMKEIFETEY 173 (335)
T ss_dssp EEEEEC-SCHHHHHHHHHHHCBTT
T ss_pred EEEEEe-CCHHHHHHHHHHhCCCc
Confidence 233333 36788899999988765
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.8e-07 Score=83.51 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=80.6
Q ss_pred cchhHHHHHHHHHHcCc--------eeEEecCCHHHHHH-HHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 122 HGLIGQAWAMIFASAGY--------KVSLYDVLSEQIEN-AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--------~V~l~d~~~e~l~~-a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+|.||.++|..+++.|+ +|.+|.++++...+ ..+.+. +.+....+++...+..+|..++|++++
T Consensus 42 aGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in-------~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391)
T 4fgw_A 42 SGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIIN-------TRHQNVKYLPGITLPDNLVANPDLIDS 114 (391)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHT-------TTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHH-------hcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence 79999999999998764 59999988753211 111111 122223344455566889999999999
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 235 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 235 (290)
+++||+||.++|... -+.+++++.+++++++++++.++++.
T Consensus 115 l~~ad~ii~avPs~~--~r~~l~~l~~~~~~~~~iv~~~KGie 155 (391)
T 4fgw_A 115 VKDVDIIVFNIPHQF--LPRICSQLKGHVDSHVRAISCLKGFE 155 (391)
T ss_dssp HTTCSEEEECSCGGG--HHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred HhcCCEEEEECChhh--hHHHHHHhccccCCCceeEEeccccc
Confidence 999999999999777 88999999999999999999888874
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=3.8e-06 Score=75.60 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=85.7
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.||..++..++..|+ +|.++|++++.++.....+.+... . . . ..++..+ +.+ ++++||+|
T Consensus 8 aG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~----~--~-~-------~~~i~~~-d~~-~~~~aDvV 71 (319)
T 1a5z_A 8 LGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP----F--T-R-------RANIYAG-DYA-DLKGSDVV 71 (319)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG----G--S-C-------CCEEEEC-CGG-GGTTCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh----h--c-C-------CcEEEeC-CHH-HhCCCCEE
Confidence 69999999999999999 999999999877654333322211 0 0 0 1233333 544 68999999
Q ss_pred EEccccc--------------hHHHHHHHHHHhhhCCCCcEE--EeCCCCcCHHHHhccC-C-CCCcEEEeccCCCCCCC
Q psy17416 200 QESVPEI--------------LQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHS-T-HRSQFIVAHPVNPPYFI 261 (290)
Q Consensus 200 ieavpe~--------------~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~la~~~-~-~~~r~ig~Hf~~p~~~~ 261 (290)
|+|++.. ..+++++++++.++++ ++++ +||.++.. +.++... . .|.|++|+
T Consensus 72 iiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~--------- 140 (319)
T 1a5z_A 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS--------- 140 (319)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC---------
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee---------
Confidence 9999963 3567899999999875 5544 36665553 4444332 3 56788887
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcC
Q psy17416 262 PLVEIVPAAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 262 ~lvEvv~~~~t~~e~~~~~~~~~~~lg 288 (290)
.|..++......+.+.+|
T Consensus 141 ---------~t~ld~~r~~~~la~~lg 158 (319)
T 1a5z_A 141 ---------GTVLDTARLRTLIAQHCG 158 (319)
T ss_dssp ---------TTHHHHHHHHHHHHHHHT
T ss_pred ---------CccHHHHHHHHHHHHHhC
Confidence 445555555555555555
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-07 Score=85.24 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=66.0
Q ss_pred CCcHHhhcccCcEEEEcc--cC------------ChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccC--CCC
Q psy17416 1 TPVLRECLEDAIFIQESV--PE------------ILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHST--HRS 62 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--~e------------~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~--~~~ 62 (290)
|+|+ +++++||+||+++ |+ |.++|+++++++++.| |++++ +||++++. ++++.... +|+
T Consensus 74 t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~ 150 (328)
T 2hjr_A 74 ENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPAN 150 (328)
T ss_dssp ESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGG
T ss_pred CCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChh
Confidence 4678 7999999999998 65 7789999999999998 67765 89988864 66665444 689
Q ss_pred ceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 63 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 63 r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
|++|+. |.-++......+++.+|..|-.+
T Consensus 151 rviG~~------------------t~Ld~~R~~~~la~~lgv~~~~v 179 (328)
T 2hjr_A 151 KVCGMS------------------GVLDSARFRCNLSRALGVKPSDV 179 (328)
T ss_dssp GEEESC------------------HHHHHHHHHHHHHHHHTSCGGGE
T ss_pred hEEEeC------------------cHHHHHHHHHHHHHHhCCCHHHe
Confidence 999973 33444455666777788654333
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.3e-07 Score=79.73 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=84.3
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCC--------
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY-------- 74 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~-------- 74 (290)
++++++++||+||.|++.+. -.++++++...+++++++.+.++..++..+.+ .....++++.|+..|+.
T Consensus 60 ~~~~~~~~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~ 136 (286)
T 3c24_A 60 DGDGWIDEADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPA 136 (286)
T ss_dssp CSSGGGGTCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHH
T ss_pred CHHHHhcCCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchh
Confidence 56678899999999999877 57899999999999999999887788888776 33346899999999876
Q ss_pred CCC--------eeeEeeCCCCCHHHHHHHHHHHHHhCC---ccEEEe
Q psy17416 75 FIP--------LVEIVPAAWTSERVITRTREIMTEIGM---KPVTLT 110 (290)
Q Consensus 75 ~~~--------lvEiv~~~~t~~~~~~~~~~~~~~lgk---~~v~v~ 110 (290)
... ...++.+..++++.++.+.+++..+|+ .++.+.
T Consensus 137 ~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~ 183 (286)
T 3c24_A 137 ARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVT 183 (286)
T ss_dssp HHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred hccCcccccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeC
Confidence 222 234444455789999999999999999 788774
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-07 Score=81.02 Aligned_cols=88 Identities=8% Similarity=0.039 Sum_probs=67.3
Q ss_pred CcHHhhcccCcEEEEcc-------------cCChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccC----C-C
Q psy17416 2 PVLRECLEDAIFIQESV-------------PEILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHST----H-R 61 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~-------------~e~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~----~-~ 61 (290)
+|+ ++++|||+||+++ .||.++|++++++++++| |++++ +||+++ .++..+. . |
T Consensus 70 ~d~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~----~~t~~~~~~~~~p~ 143 (303)
T 2i6t_A 70 KDL-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVE----IMTYVTWKLSTFPA 143 (303)
T ss_dssp SCG-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHH----HHHHHHHHHHCCCG
T ss_pred CCH-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHH----HHHHHHHHhcCCCH
Confidence 577 7899999999997 999999999999999998 77766 888554 4444442 2 7
Q ss_pred CceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeE
Q psy17416 62 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 117 (290)
Q Consensus 62 ~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~ 117 (290)
+|++|+ .|.-++......+++.+|..| ++..+++
T Consensus 144 ~rviG~------------------gt~Ld~~R~~~~la~~lgv~~----~~v~~~v 177 (303)
T 2i6t_A 144 NRVIGI------------------GCNLDSQRLQYIITNVLKAQT----SGKEVWV 177 (303)
T ss_dssp GGEEEC------------------TTHHHHHHHHHHHHHTSCCTT----GGGGEEE
T ss_pred HHeeCC------------------CCCchHHHHHHHHHHHcCCCh----HHeEEEE
Confidence 899999 466666677777777888654 3444554
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.29 E-value=8e-07 Score=78.27 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=70.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeec----cCCCC-CCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH----PVNPP-YFI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~h----f~~P~-~~~ 76 (290)
+|+++.++++|+||.|+|.+. +.+++.++. .+++++.+.+++++++.+... ++.+.| |.+|+ ...
T Consensus 50 ~~~~~~~~~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~ 119 (276)
T 2i76_A 50 ATLEKHPELNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALE 119 (276)
T ss_dssp CSSCCCCC---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGG
T ss_pred CCHHHHHhcCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHH
Confidence 567778899999999999986 678887765 678888876667888877654 456677 66643 323
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
.+.++.....++++.++.+..+++.+|+.++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~~~v~ 153 (276)
T 2i76_A 120 MKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP 153 (276)
T ss_dssp CGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECC
T ss_pred HhCCCeEEEEeChHHHHHHHHHHHHhCCCEEEEC
Confidence 3555545545567779999999999999898884
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=77.24 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=84.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhh-cCCCcEEeecCCCCC--hHHHhcccCC-CCceeeeccC------C
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPV------N 71 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~-~~~~~i~~snts~~~--~~~l~~~~~~-~~r~~g~hf~------~ 71 (290)
+|++++++++|+||.|+|.+.- .++++++... +++++++.+.+|.-+ ...+.+.+.. ..|+++.|++ .
T Consensus 58 ~~~~~~~~~aDvVilavp~~~~--~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g 135 (290)
T 3b1f_A 58 ADFKVFAALADVIILAVPIKKT--IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSG 135 (290)
T ss_dssp SCTTTTGGGCSEEEECSCHHHH--HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CC
T ss_pred CCHHHhhcCCCEEEEcCCHHHH--HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcch
Confidence 5778889999999999998765 7889999888 889998885433322 2567776654 6899999988 5
Q ss_pred CCCC------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 72 PPYF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 72 P~~~------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
|... ...+.+.++..++++.++.+.+++..+|+.++.+
T Consensus 136 ~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~ 179 (290)
T 3b1f_A 136 AVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEI 179 (290)
T ss_dssp TTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEEC
T ss_pred HHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 6542 3567888888899999999999999999987766
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=77.68 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=75.9
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..|+ +|.++|++++.++..... + ..+. . . ....+++. ++. +++++||+|
T Consensus 8 aG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~-------l-~~~~--~-~---~~~~~i~~-~~~-~a~~~aDvV 71 (304)
T 2v6b_A 8 TGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAED-------I-AHAA--P-V---SHGTRVWH-GGH-SELADAQVV 71 (304)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH-------H-TTSC--C-T---TSCCEEEE-ECG-GGGTTCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHh-------h-hhhh--h-h---cCCeEEEE-CCH-HHhCCCCEE
Confidence 69999999999999999 999999998765421110 1 0111 0 0 01123332 455 468999999
Q ss_pred EEcc--c------------cchHHHHHHHHHHhhhCCCCcEE--EeCCCCcCHHHHhccCCCCCcEEEe
Q psy17416 200 QESV--P------------EILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHSTHRSQFIVA 252 (290)
Q Consensus 200 ieav--p------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~la~~~~~~~r~ig~ 252 (290)
|+++ | ++..+++++++++.+++ +++++ +||.+......+++.. .|.|++|+
T Consensus 72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~ 138 (304)
T 2v6b_A 72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS 138 (304)
T ss_dssp EECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence 9999 4 36678899999999986 56654 3676665544454444 67899888
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-06 Score=78.98 Aligned_cols=148 Identities=16% Similarity=0.110 Sum_probs=106.2
Q ss_pred eeeEEecccchhHHHHHHHHHHc------CceeEEecCCH-HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASA------GYKVSLYDVLS-EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT 186 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~------G~~V~l~d~~~-e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 186 (290)
-|||+ +|.||.++|..+... |++|.+.+++. ...+.+.+ .|..... ...
T Consensus 57 IgIIG---lGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e-----------~G~~v~d----------~ta 112 (525)
T 3fr7_A 57 IGVIG---WGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARA-----------AGFTEES----------GTL 112 (525)
T ss_dssp EEEEC---CTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHH-----------TTCCTTT----------TCE
T ss_pred EEEEe---EhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHH-----------CCCEEec----------CCC
Confidence 35666 899999999999998 99988665543 23333333 3332100 012
Q ss_pred CchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhc---cCCCCCcEEEeccCCCCCC---
Q psy17416 187 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE---HSTHRSQFIVAHPVNPPYF--- 260 (290)
Q Consensus 187 ~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~---~~~~~~r~ig~Hf~~p~~~--- 260 (290)
.++.+++++||+||.++|... -.+++.++.+.++++++| +-..++.+..+.+ .++...+++-.||-.|.+.
T Consensus 113 ~s~aEAa~~ADVVILaVP~~~--~~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~ 189 (525)
T 3fr7_A 113 GDIWETVSGSDLVLLLISDAA--QADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRR 189 (525)
T ss_dssp EEHHHHHHHCSEEEECSCHHH--HHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHH
T ss_pred CCHHHHHhcCCEEEECCChHH--HHHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHH
Confidence 577889999999999999765 347889999999999986 7888888877764 3333357999998777663
Q ss_pred ------------CCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 261 ------------IPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 261 ------------~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++. =+..+...+.+..+.+.+++..+|.
T Consensus 190 ~y~~G~~~~g~Gv~~-liAv~qd~tgea~e~alala~aiG~ 229 (525)
T 3fr7_A 190 LYVQGKEINGAGINS-SFAVHQDVDGRATDVALGWSVALGS 229 (525)
T ss_dssp HHHHHTTSTTCSCCE-EEEEEECSSSCHHHHHHHHHHHTTC
T ss_pred HHhcccccccCCccE-EEEcCCCCCHHHHHHHHHHHHHCCC
Confidence 331 1444456677889999999999997
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.6e-06 Score=78.00 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=73.9
Q ss_pred cchhHHHHHHHHHH-cCceeEEec---CCHHHHHHHHHHHHHHHHHHHHcCCC-C-CCCCh--hhhhcccc-cCCchHhh
Q psy17416 122 HGLIGQAWAMIFAS-AGYKVSLYD---VLSEQIENAKNTIQHTLQDYHQKGCL-K-GSLSP--EEQFGLIS-GTPVLREC 192 (290)
Q Consensus 122 ~G~~g~~ia~~~~~-~G~~V~l~d---~~~e~l~~a~~~i~~~~~~~~~~g~~-~-~~~~~--~~~~~~i~-~~~~l~~~ 192 (290)
+|.||..+|..++. .|++|.+|| ++++.++.+.+ +.|.. . ..... .....++. .+++++++
T Consensus 10 aG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 79 (404)
T 3c7a_A 10 GGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKDGTQTEVKSRPKVITKDPEIA 79 (404)
T ss_dssp CSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSSSCEEEEEECCSEEESCHHHH
T ss_pred CCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCCCccceeeccceEEeCCHHHH
Confidence 79999999999988 599999999 88777665433 11100 0 00000 11123454 57788888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 235 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 235 (290)
+.++|+||.|+|... ++++++++.+.++++++|++++++..
T Consensus 80 ~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G 120 (404)
T 3c7a_A 80 ISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAG 120 (404)
T ss_dssp HTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred hCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence 899999999999877 78999999999999999998655554
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=78.70 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=87.7
Q ss_pred ccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 111 TEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 111 ~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
+-+-|+++ +|.||+.+|..+...|++|..||+++...+.+.+ . ++....+++
T Consensus 164 gktvGIIG---~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~--------------g~~~~~~l~ 215 (351)
T 3jtm_A 164 GKTIGTVG---AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE-----------T--------------GAKFVEDLN 215 (351)
T ss_dssp TCEEEEEC---CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH-----------H--------------CCEECSCHH
T ss_pred CCEEeEEE---eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh-----------C--------------CCeEcCCHH
Confidence 33456665 7999999999999999999999998643332222 1 122346888
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCCC-CcEEEecc--------CCCCC
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHR-SQFIVAHP--------VNPPY 259 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~~-~r~ig~Hf--------~~p~~ 259 (290)
+.+++||+|+.++|-..+.+.-+-++..+.++++++|+..+.+ ..-..+...+... -.-.++=- .+|.+
T Consensus 216 ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~ 295 (351)
T 3jtm_A 216 EMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWR 295 (351)
T ss_dssp HHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGG
T ss_pred HHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhh
Confidence 9999999999999966554433445666779999998733322 2233454444311 11112211 12333
Q ss_pred CCCeEEEecC-CCCCHHHHHHHH
Q psy17416 260 FIPLVEIVPA-AWTSERVITRTR 281 (290)
Q Consensus 260 ~~~lvEvv~~-~~t~~e~~~~~~ 281 (290)
.++.|-++|+ ...+.++..++.
T Consensus 296 ~~~nvilTPHia~~t~ea~~~~~ 318 (351)
T 3jtm_A 296 YMPNQAMTPHTSGTTIDAQLRYA 318 (351)
T ss_dssp TSTTBCCCCSCGGGSHHHHHHHH
T ss_pred cCCCEEECCcCCCCCHHHHHHHH
Confidence 4566678887 344555555543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5.7e-07 Score=81.49 Aligned_cols=89 Identities=9% Similarity=0.080 Sum_probs=69.1
Q ss_pred CCcHHhhcccCcEEEEcc--cCCh-----------------HHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccC
Q psy17416 1 TPVLRECLEDAIFIQESV--PEIL-----------------QIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHST 59 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--~e~~-----------------~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~ 59 (290)
|+|+++++++||+||+++ |++. .+++++++++++.| |++++ +||++++. ++++....
T Consensus 69 t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~ 146 (331)
T 1pzg_A 69 EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEAS 146 (331)
T ss_dssp ECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHH
T ss_pred eCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhc
Confidence 478999999999999999 7654 45999999999998 78876 89999875 66664443
Q ss_pred --CCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 60 --HRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 60 --~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+|+|++|+ + |.-++......+++.+|..|-.+
T Consensus 147 ~~~~~rviG~----------------g--t~LD~~R~~~~la~~lgv~~~~v 180 (331)
T 1pzg_A 147 GVPTNMICGM----------------A--CMLDSGRFRRYVADALSVSPRDV 180 (331)
T ss_dssp CCCGGGEEEC----------------C--HHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCChhcEEec----------------c--chHHHHHHHHHHHHHhCCCHHHc
Confidence 68999999 2 55666666666778898755433
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=74.67 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=75.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhh----hcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ----FGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~----~~~i~~~~~l~~~l~~aD 197 (290)
+|.||..+|..+++ |++|+++|++++.++...+ .+..-........ ..++..++++.+++++||
T Consensus 8 ~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~-----------~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aD 75 (402)
T 1dlj_A 8 SGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINN-----------GLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAE 75 (402)
T ss_dssp CSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHT-----------TCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCS
T ss_pred CCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHc-----------CCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCC
Confidence 79999999999999 9999999999988765443 1111000000111 124566788877889999
Q ss_pred EEEEccccchH---------HHHHHHHHHhhhCCCCcEEEe-CCCCcCHH-HHhccCC
Q psy17416 198 FIQESVPEILQ---------IKHQVYRAIDIFMSSNTILSS-STSSFLPS-VLSEHST 244 (290)
Q Consensus 198 lVieavpe~~~---------~k~~~~~~l~~~~~~~~ii~s-~ts~~~~~-~la~~~~ 244 (290)
+||.|+|...+ ...++++++.+ ++++++|+. +|.+...+ .++..+.
T Consensus 76 vviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~ 132 (402)
T 1dlj_A 76 LVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQ 132 (402)
T ss_dssp EEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTT
T ss_pred EEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhC
Confidence 99999998741 45677788888 888888774 45444433 5555443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-06 Score=77.14 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=77.1
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..++..|+ +|.++|++++.++.....+.+... ......+++.++++ +++++||+||
T Consensus 10 aG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~-------------~~~~~~~i~~t~d~-~a~~~aD~Vi 75 (309)
T 1ur5_A 10 AGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP-------------IEGFDVRVTGTNNY-ADTANSDVIV 75 (309)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH-------------HHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh-------------hcCCCeEEEECCCH-HHHCCCCEEE
Confidence 68999999999999997 999999998766532221111100 00112346666788 5799999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhc-cCC-CCCcEEEe
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSE-HST-HRSQFIVA 252 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~-~~~-~~~r~ig~ 252 (290)
+++ .++..+++++++++.+++ +++++. ||..... +.++. ... .|.|++|+
T Consensus 76 ~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~-t~~~~~~~~~~~~rviG~ 143 (309)
T 1ur5_A 76 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAM-TYLAAEVSGFPKERVIGQ 143 (309)
T ss_dssp ECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEEC
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHH-HHHHHHHcCCCHHHEEEC
Confidence 997 677789999999999997 666543 5533332 22222 222 35688888
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.7e-07 Score=81.08 Aligned_cols=125 Identities=14% Similarity=0.040 Sum_probs=85.1
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||..+|..+...|++|..||++++... + .....+++++
T Consensus 166 ~vgIIG---~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~--------------------g----------~~~~~~l~el 212 (333)
T 3ba1_A 166 RVGIIG---LGRIGLAVAERAEAFDCPISYFSRSKKPNT--------------------N----------YTYYGSVVEL 212 (333)
T ss_dssp CEEEEC---CSHHHHHHHHHHHTTTCCEEEECSSCCTTC--------------------C----------SEEESCHHHH
T ss_pred EEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCchhcc--------------------C----------ceecCCHHHH
Confidence 345565 799999999999999999999999874210 1 1224678888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCC-CCCcEEEeccCC--C-----CCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHST-HRSQFIVAHPVN--P-----PYFIP 262 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~-~~~r~ig~Hf~~--p-----~~~~~ 262 (290)
+++||+|+.++|.+.+.+.-+-+++.+.++++++++..+++..+ ..+.+.+. ...+..++++|. | .+..+
T Consensus 213 l~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~ 292 (333)
T 3ba1_A 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLE 292 (333)
T ss_dssp HHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCT
T ss_pred HhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCC
Confidence 99999999999987654443334555678899988744444333 46666664 345678888876 3 12334
Q ss_pred eEEEecCC
Q psy17416 263 LVEIVPAA 270 (290)
Q Consensus 263 lvEvv~~~ 270 (290)
.|-++|+.
T Consensus 293 nviltPH~ 300 (333)
T 3ba1_A 293 NVVLLPHV 300 (333)
T ss_dssp TEEECSSC
T ss_pred CEEECCcC
Confidence 56666653
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=7.2e-07 Score=78.44 Aligned_cols=146 Identities=10% Similarity=0.058 Sum_probs=91.5
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
++++ +|.||..+|..+.+.|++|.+||++++.++... ..+. .+. .....+. .++. ++++
T Consensus 4 ~iiG---~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~-----------~~~~-~~~----~~~~~~~-~~~~-~~~~ 62 (291)
T 1ks9_A 4 TVLG---CGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVET-DGS----IFNESLT-ANDP-DFLA 62 (291)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECT-TSC----EEEEEEE-ESCH-HHHH
T ss_pred EEEC---cCHHHHHHHHHHHhCCCCEEEEEcCccceeeEE-----------EEcC-CCc----eeeeeee-ecCc-cccC
Confidence 4554 699999999999999999999999886432200 0110 000 0001112 2333 4678
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCCCCCcEE-EeccC-----CCCCC-----CC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTHRSQFI-VAHPV-----NPPYF-----IP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~~~~r~i-g~Hf~-----~p~~~-----~~ 262 (290)
++|+||.|+|... -.++++++.+.+++++++++.+.++... .+.+.++ . ++ |.+++ .| .. ..
T Consensus 63 ~~d~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p-~~~~~~~g~ 136 (291)
T 1ks9_A 63 TSDLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGN-VIIHVANGI 136 (291)
T ss_dssp TCSEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETT-EEEEEECCC
T ss_pred CCCEEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCC-EEEEecccc
Confidence 9999999999875 5788899999999999888777777654 4444432 2 54 43331 23 10 11
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
+-+.+. ..+++..+++.++++.+|.
T Consensus 137 -~~i~~~-~~~~~~~~~~~~ll~~~g~ 161 (291)
T 1ks9_A 137 -THIGPA-RQQDGDYSYLADILQTVLP 161 (291)
T ss_dssp -EEEEES-SGGGTTCTHHHHHHHTTSS
T ss_pred -eEEccC-CCCcchHHHHHHHHHhcCC
Confidence 112221 2346677889999998886
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6.3e-07 Score=80.91 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=66.2
Q ss_pred CCcHHhhcccCcEEEEcc--cCC-----------------hHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccC
Q psy17416 1 TPVLRECLEDAIFIQESV--PEI-----------------LQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHST 59 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--~e~-----------------~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~ 59 (290)
|+|+ +++++||+||+++ |++ .++|+++++++++.| |++++ +||++++. ++++....
T Consensus 64 t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~ 140 (322)
T 1t2d_A 64 SNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHS 140 (322)
T ss_dssp ECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHH
T ss_pred CCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhc
Confidence 3678 7999999999998 754 358999999999998 78855 89998875 66665444
Q ss_pred --CCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 60 --HRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 60 --~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+|+|++|+- |..++......+++.+|..|-.+
T Consensus 141 g~~~~rviG~g------------------t~ld~~R~~~~la~~lgv~~~~v 174 (322)
T 1t2d_A 141 GVPKNKIIGLG------------------GVLDTSRLKYYISQKLNVCPRDV 174 (322)
T ss_dssp CCCGGGEEECC------------------HHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCChHHEEecc------------------CcccHHHHHHHHHHHhCCCHHHe
Confidence 688998883 44556556666777788654333
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.14 E-value=8.4e-07 Score=79.62 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=77.3
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccCCCCceeeeccCCCCCCC--
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPPYFI-- 76 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~~~~r~~g~hf~~P~~~~-- 76 (290)
++++++++++||+||.|+|.+...+ +++++...+++++++..+||..+.+ +++... +++++|+||+.+|-..
T Consensus 74 ~~~~~e~~~~aDvVi~~vp~~~~~~--~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~--~~~~~g~~~vd~pv~g~~ 149 (312)
T 3qsg_A 74 KASVAEVAGECDVIFSLVTAQAALE--VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVI--SRHRPSAQYAAVAVMSAV 149 (312)
T ss_dssp CSCHHHHHHHCSEEEECSCTTTHHH--HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHH--HHHCTTCEEEEEEECSCS
T ss_pred eCCHHHHHhcCCEEEEecCchhHHH--HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHH--HhhcCCCeEEeccccCCc
Confidence 3678899999999999999998775 6789999999999998777665554 333333 3444577776543322
Q ss_pred -----CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 77 -----PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 77 -----~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
.+..++.|+.+ +.+..+++.+|+.++.+ .+.+|
T Consensus 150 ~~~~g~l~i~vgg~~~-----~~~~~ll~~~g~~~~~~-g~~~g 187 (312)
T 3qsg_A 150 KPHGHRVPLVVDGDGA-----RRFQAAFTLYGCRIEVL-DGEVG 187 (312)
T ss_dssp TTTGGGSEEEEESTTH-----HHHHHHHHTTTCEEEEC-CSSTT
T ss_pred hhhcCCEEEEecCChH-----HHHHHHHHHhCCCeEEc-CCCCC
Confidence 67777877654 77888999999988876 45344
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.4e-06 Score=75.17 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=85.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCC---CCceeeeccCCCCCCCCe
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH---RSQFIVAHPVNPPYFIPL 78 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~---~~r~~g~hf~~P~~~~~l 78 (290)
+|..++++++|+||-|++ .....+++.++...+++++++.+.++++++..+++.+.. +.++++.|+..|+....-
T Consensus 76 ~~~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g 153 (322)
T 2izz_A 76 PHNKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREG 153 (322)
T ss_dssp SCHHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCE
T ss_pred CChHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCC
Confidence 467788899999999999 457778999999989999999999989999888776542 468999999999876655
Q ss_pred eeEe-eCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 79 VEIV-PAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 79 vEiv-~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
..++ .+..++++.++.+..++..+|+...
T Consensus 154 ~~v~~~g~~~~~~~~~~v~~ll~~~G~~~~ 183 (322)
T 2izz_A 154 ATVYATGTHAQVEDGRLMEQLLSSVGFCTE 183 (322)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTTEEEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 5555 5677789999999999999997543
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=69.74 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=79.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCC-CCCCC-Cee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN-PPYFI-PLV 79 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~-P~~~~-~lv 79 (290)
+|+++++ ++|+|+.|++ .....++++++.. + ++++.+++|++++..|++.++.+.++++. +.+ |.... ...
T Consensus 50 ~~~~~~~-~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~-~~~~~~~~~~g~~ 122 (263)
T 1yqg_A 50 ATLPELH-SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRV-MPNTPGKIGLGVS 122 (263)
T ss_dssp SSCCCCC-TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEE-ECCGGGGGTCEEE
T ss_pred CCHHHHh-cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEE-cCCHHHHHcCceE
Confidence 4666778 9999999999 4555677777655 4 89999999999999999888766689988 555 44433 356
Q ss_pred eEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 80 EIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 80 Eiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.++.+..++++.++.+.+++..+|+.+ .+
T Consensus 123 ~i~~~~~~~~~~~~~~~~l~~~~g~~~-~~ 151 (263)
T 1yqg_A 123 GMYAEAEVSETDRRIADRIMKSVGLTV-WL 151 (263)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTTEEEE-EC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhCCCEE-Ee
Confidence 788888889999999999999999854 55
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=72.40 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=88.5
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~-~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
..-|+++ +|.||+.+|..+...|++|..||+ +++. ..+.+ .| +....+++
T Consensus 147 ~~vgIIG---~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~-----------~g--------------~~~~~~l~ 197 (320)
T 1gdh_A 147 KTLGIYG---FGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEAS-----------YQ--------------ATFHDSLD 197 (320)
T ss_dssp CEEEEEC---CSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHH-----------HT--------------CEECSSHH
T ss_pred CEEEEEC---cCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhh-----------cC--------------cEEcCCHH
Confidence 3456665 799999999999999999999999 7754 22211 11 12234788
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccC-------CCCCC
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPV-------NPPYF 260 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~-------~p~~~ 260 (290)
+.+++||+|+.++|...+.+.-+-++..+.++++++++..+++ .....+...+.. .-.-.|+.+| .|.+.
T Consensus 198 ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~ 277 (320)
T 1gdh_A 198 SLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYD 277 (320)
T ss_dssp HHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGG
T ss_pred HHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhh
Confidence 8889999999999966543322224566778999988754444 233355554431 1111223332 33445
Q ss_pred CCeEEEecCCCC-CHHHHHHHHHH
Q psy17416 261 IPLVEIVPAAWT-SERVITRTREI 283 (290)
Q Consensus 261 ~~lvEvv~~~~t-~~e~~~~~~~~ 283 (290)
.+.+-++|+... +.++..++...
T Consensus 278 ~~nviltPH~~~~t~~~~~~~~~~ 301 (320)
T 1gdh_A 278 LPNTFLFPHIGSAATQAREDMAHQ 301 (320)
T ss_dssp CTTEEECSSCTTCBHHHHHHHHHH
T ss_pred CCCEEECCcCCcCcHHHHHHHHHH
Confidence 677889998644 45554444433
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.2e-05 Score=69.77 Aligned_cols=157 Identities=12% Similarity=0.021 Sum_probs=94.1
Q ss_pred eeEEecccchhHHHHHHHHHHc-----C-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-----G-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 188 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-----G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 188 (290)
++++ +|.||..+|..+.+. | ++|++|++ ++.++...+. .|.............++..+++
T Consensus 12 ~iiG---~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~~ 77 (317)
T 2qyt_A 12 AVFG---LGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVTDN 77 (317)
T ss_dssp EEEC---CSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEESC
T ss_pred EEEC---cCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEecC
Confidence 5665 799999999999998 9 99999999 6655433220 2221110000000112233345
Q ss_pred hHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH-HHHhccCCCCCcEEEeccCCCCCC-------
Q psy17416 189 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIVAHPVNPPYF------- 260 (290)
Q Consensus 189 l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~la~~~~~~~r~ig~Hf~~p~~~------- 260 (290)
.+ .+.++|+||.|+|... -.++++++.+.++++++|++-+.++.. ..+++.++...-+.|+.+...+..
T Consensus 78 ~~-~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~ 154 (317)
T 2qyt_A 78 PA-EVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITL 154 (317)
T ss_dssp HH-HHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEE
T ss_pred cc-ccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEE
Confidence 54 4689999999999876 468889999988888888877777776 456555543221223222111100
Q ss_pred ---CCeEEEecC-CCCCHHHHHHHHHHHHHcCC
Q psy17416 261 ---IPLVEIVPA-AWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 261 ---~~lvEvv~~-~~t~~e~~~~~~~~~~~lgk 289 (290)
..++-+.+. ...+++.+ .+.++++..|.
T Consensus 155 ~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~ 186 (317)
T 2qyt_A 155 EADRELFYFGSGLPEQTDDEV-RLAELLTAAGI 186 (317)
T ss_dssp EEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTC
T ss_pred cCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCC
Confidence 011112222 33457777 88999998875
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.1e-06 Score=73.94 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=75.2
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..++..|+ +|.++|++++.++.....+...... .+ ...+++.++|+ +++++||+||
T Consensus 7 aG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~---~~----------~~~~i~~t~d~-~a~~~aD~Vi 72 (308)
T 2d4a_B 7 AGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE---LG----------VDIRISGSNSY-EDMRGSDIVL 72 (308)
T ss_dssp CSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH---HT----------CCCCEEEESCG-GGGTTCSEEE
T ss_pred cCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh---cC----------CCeEEEECCCH-HHhCCCCEEE
Confidence 58999999999988888 6999999987765322222221100 00 01245555677 4799999999
Q ss_pred Ec--------------cccchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccC----CC-CCcEEEe
Q psy17416 201 ES--------------VPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHS----TH-RSQFIVA 252 (290)
Q Consensus 201 ea--------------vpe~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~----~~-~~r~ig~ 252 (290)
++ +.++..+++++.+++.+++ +++++. || |+..++..+ .. |.|++|+
T Consensus 73 ~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN----Pv~~~t~~~~k~~~~p~~rviG~ 140 (308)
T 2d4a_B 73 VTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN----PVDAMTYVMYKKTGFPRERVIGF 140 (308)
T ss_dssp ECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS----SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred EeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC----chHHHHHHHHHhcCCChhhEEEe
Confidence 99 6778888999999999997 555333 44 444443322 22 5688888
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-05 Score=70.05 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=80.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCC-------
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY------- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~------- 74 (290)
+|++++ +++|+|+.|+|.+ ...++++++...+++++++.+ +++.+...+........|+++.|++....
T Consensus 50 ~~~~~~-~~~D~vi~av~~~--~~~~~~~~l~~~~~~~~~vv~-~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a 125 (279)
T 2f1k_A 50 QDLSLL-QTAKIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTD-VASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGA 125 (279)
T ss_dssp SCGGGG-TTCSEEEECSCHH--HHHHHHHHHGGGSCTTCEEEE-CCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGC
T ss_pred CCHHHh-CCCCEEEEECCHH--HHHHHHHHHHhhCCCCCEEEE-CCCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHH
Confidence 477877 9999999999964 667899999999999998866 46677654443332223899999876221
Q ss_pred -----CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 75 -----FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 75 -----~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
....+.+.++..++++.++.+.+++..+|+.++.+.
T Consensus 126 ~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~ 166 (279)
T 2f1k_A 126 EENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCT 166 (279)
T ss_dssp CTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECC
T ss_pred hHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 123778888888899999999999999999888773
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=72.34 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=69.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..+++.|++|.+++++ +.++...+ .|..... .......++..++++++ +.++|+||.
T Consensus 11 aG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~-----------~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~D~Vil 76 (335)
T 3ghy_A 11 AGAVGGYLGARLALAGEAINVLARG-ATLQALQT-----------AGLRLTE-DGATHTLPVRATHDAAA-LGEQDVVIV 76 (335)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHH-----------TCEEEEE-TTEEEEECCEEESCHHH-HCCCSEEEE
T ss_pred cCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHH-----------CCCEEec-CCCeEEEeeeEECCHHH-cCCCCEEEE
Confidence 7999999999999999999999985 44443222 2322110 01111223455677776 689999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 234 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 234 (290)
|+|... -.++++++.+.++++++|++...++
T Consensus 77 avk~~~--~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 77 AVKAPA--LESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp CCCHHH--HHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred eCCchh--HHHHHHHHHhhCCCCCEEEEECCCC
Confidence 999743 5588899999999999998877775
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-05 Score=69.07 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=93.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..+++.|++|.+|++++ .+...+ .|..............+..+++.++ +.++|+||.
T Consensus 10 aGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~-----------~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vil 75 (312)
T 3hn2_A 10 AGALGLYYGALLQRSGEDVHFLLRRD--YEAIAG-----------NGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLV 75 (312)
T ss_dssp CSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHH-----------TCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEE
T ss_pred cCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHh-----------CCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEE
Confidence 79999999999999999999999986 222221 3321110000000113444567764 689999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH-HHHhccCCCCCcEEEec------cCCCCCC---C-CeEEEecCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIVAH------PVNPPYF---I-PLVEIVPAA 270 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~la~~~~~~~r~ig~H------f~~p~~~---~-~lvEvv~~~ 270 (290)
|+|... -.++++++.+.++++++|++-..++.. +.+.+.++. .++++.- ...|-+. . .-+-+-..+
T Consensus 76 avk~~~--~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~ 152 (312)
T 3hn2_A 76 GLKTFA--NSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFL 152 (312)
T ss_dssp CCCGGG--GGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEEEEEESS
T ss_pred ecCCCC--cHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCC
Confidence 999766 458899999999999999998999874 455555542 3444321 1111110 0 012222223
Q ss_pred CCCHHHHHHHHHHHHHcC
Q psy17416 271 WTSERVITRTREIMTEIG 288 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lg 288 (290)
..+.+..+.+.+++..-|
T Consensus 153 ~~~~~~~~~l~~~l~~~g 170 (312)
T 3hn2_A 153 PRDTGRIEELAAMFRQAG 170 (312)
T ss_dssp CCCSHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCC
Confidence 345667778888887765
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=6e-06 Score=69.32 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=76.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC--------------hHHHhcccCCCCceeee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--------------PSVLSEHSTHRSQFIVA 67 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~--------------~~~l~~~~~~~~r~~g~ 67 (290)
++++++++++|+||.|++.+. . .++++++.+.+ +++++.+.+++++ ..++++.+.. .+++..
T Consensus 56 ~~~~~~~~~~D~Vi~~~~~~~-~-~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~ 131 (212)
T 1jay_A 56 MKNEDAAEACDIAVLTIPWEH-A-IDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSA 131 (212)
T ss_dssp EEHHHHHHHCSEEEECSCHHH-H-HHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEEC
T ss_pred hhHHHHHhcCCEEEEeCChhh-H-HHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEE
Confidence 367788999999999999644 3 48888888777 4899999998777 6788887753 677755
Q ss_pred ccCCCCCCC-------CeeeEeeCCCCCHHHHHHHHHHHHHh-CCccEEE
Q psy17416 68 HPVNPPYFI-------PLVEIVPAAWTSERVITRTREIMTEI-GMKPVTL 109 (290)
Q Consensus 68 hf~~P~~~~-------~lvEiv~~~~t~~~~~~~~~~~~~~l-gk~~v~v 109 (290)
|...|.... .+..++.++ +++.++.+.++++.+ |+.++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~ 179 (212)
T 1jay_A 132 LHTIPAARFANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDA 179 (212)
T ss_dssp CTTCCHHHHHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEE
T ss_pred ccchHHHHhhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceec
Confidence 433332211 145566665 689999999999999 9988887
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.01 E-value=8.9e-06 Score=70.55 Aligned_cols=101 Identities=10% Similarity=0.148 Sum_probs=81.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCC-eee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~-lvE 80 (290)
+|++++++++|+|+.|+|. ....+++.++ .+++++.+.++++++..+.+...+..+++..|+..|..... ...
T Consensus 52 ~~~~~~~~~~D~Vi~~v~~--~~~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~ 125 (259)
T 2ahr_A 52 MSHQDLIDQVDLVILGIKP--QLFETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTA 125 (259)
T ss_dssp SSHHHHHHTCSEEEECSCG--GGHHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEE
T ss_pred CCHHHHHhcCCEEEEEeCc--HhHHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEE
Confidence 5788889999999999993 3445566544 37889999999999999988877666888888887876554 667
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
++.+..++++.++.+.+++..+|+ ++.+
T Consensus 126 i~~~~~~~~~~~~~~~~ll~~~G~-~~~~ 153 (259)
T 2ahr_A 126 LTGNALVSQELQARVRDLTDSFGS-TFDI 153 (259)
T ss_dssp EEECTTCCHHHHHHHHHHHHTTEE-EEEC
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence 788888999999999999999994 6666
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=70.02 Aligned_cols=105 Identities=13% Similarity=0.175 Sum_probs=79.2
Q ss_pred CcHHhhcc-cCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCC--CChHHHhcccCCCCceeeeccCCCCC----
Q psy17416 2 PVLRECLE-DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPY---- 74 (290)
Q Consensus 2 ~~l~~~~~-~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~--~~~~~l~~~~~~~~r~~g~hf~~P~~---- 74 (290)
+|++++++ ++|+|+.|+|.+. -.+++.++...+++++++...++. .....+.+... +++++.|++..+.
T Consensus 53 ~~~~~~~~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~--~~~v~~~p~~~~~~~gp 128 (281)
T 2g5c_A 53 TSIAKVEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGV 128 (281)
T ss_dssp SCGGGGGGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEEECCCSCCSG
T ss_pred CCHHHHhcCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcc--ccceeeccccCCccCCh
Confidence 47888899 9999999999873 337888898888999987753332 22345666553 3589988876432
Q ss_pred --------CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 75 --------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 75 --------~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
....+.+.++..++++.++.+.+++..+|+.++.+.
T Consensus 129 ~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~ 172 (281)
T 2g5c_A 129 EYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMS 172 (281)
T ss_dssp GGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECC
T ss_pred hhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234577888888899999999999999999887763
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=71.41 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=67.2
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
||++ +|.||..++..+++.|++|.+|+++++.++...+ .|... ..+.... ++..++++++ +.
T Consensus 18 ~iIG---~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~-----------~g~~~-~~~~~~~--~~~~~~~~~~-~~ 79 (335)
T 1z82_A 18 FVLG---AGSWGTVFAQMLHENGEEVILWARRKEIVDLINV-----------SHTSP-YVEESKI--TVRATNDLEE-IK 79 (335)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------HSCBT-TBTTCCC--CSEEESCGGG-CC
T ss_pred EEEC---cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------hCCcc-cCCCCee--eEEEeCCHHH-hc
Confidence 5665 7999999999999999999999999987665433 22111 1111111 4556678887 88
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 236 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 236 (290)
++|+||.|+|... -.+++.++.+ +++++++-+.++..
T Consensus 80 ~aDvVil~vk~~~--~~~v~~~l~~---~~~~vv~~~nGi~~ 116 (335)
T 1z82_A 80 KEDILVIAIPVQY--IREHLLRLPV---KPSMVLNLSKGIEI 116 (335)
T ss_dssp TTEEEEECSCGGG--HHHHHTTCSS---CCSEEEECCCCCCT
T ss_pred CCCEEEEECCHHH--HHHHHHHhCc---CCCEEEEEeCCCCC
Confidence 9999999999532 4556555544 67777765545443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=97.96 E-value=7.3e-06 Score=75.77 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=84.9
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-.-|+++ +|.||..+|..+...|++|..||+++...+.+.+ .| +....++++
T Consensus 192 ktvGIIG---lG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~-----------~G--------------~~~~~~l~e 243 (393)
T 2nac_A 192 MHVGTVA---AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE-----------LN--------------LTWHATRED 243 (393)
T ss_dssp CEEEEEC---CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH-----------HT--------------CEECSSHHH
T ss_pred CEEEEEe---ECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhh-----------cC--------------ceecCCHHH
Confidence 3456665 7999999999999999999999988643222211 11 122357788
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCCC-CcEEEeccC--------CCCCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHR-SQFIVAHPV--------NPPYF 260 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~~-~r~ig~Hf~--------~p~~~ 260 (290)
.+++||+|+.++|-..+.+.-+-++..+.++++++|+..+.+-.+. .+.+.+... -.-.|+-.| +|.+.
T Consensus 244 ll~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~ 323 (393)
T 2nac_A 244 MYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRT 323 (393)
T ss_dssp HGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGT
T ss_pred HHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHc
Confidence 8999999999999655443222245667789999987444433332 455555321 111222222 23344
Q ss_pred CCeEEEecCCCC-CHHHHHH
Q psy17416 261 IPLVEIVPAAWT-SERVITR 279 (290)
Q Consensus 261 ~~lvEvv~~~~t-~~e~~~~ 279 (290)
++.|-++|+... +.+..++
T Consensus 324 ~~nvilTPHia~~T~e~~~~ 343 (393)
T 2nac_A 324 MPYNGMTPHISGTTLTAQAR 343 (393)
T ss_dssp STTBCCCCSCTTCSHHHHHH
T ss_pred CCCEEECCCCCcCcHHHHHH
Confidence 566778887433 3444433
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=6.8e-05 Score=66.95 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=72.7
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~~l~~aDl 198 (290)
+|.||..++..++..| ++|.++|++++.++.....+.+.. . .. + ..+.. ++++ +++++||+
T Consensus 9 aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~----~--~~-~--------~~~~~~~~d~-~~~~~aDv 72 (309)
T 1hyh_A 9 LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM----A--NL-E--------AHGNIVINDW-AALADADV 72 (309)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG----G--GS-S--------SCCEEEESCG-GGGTTCSE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhh----h--hc-C--------CCeEEEeCCH-HHhCCCCE
Confidence 7999999999999989 799999999987765443222110 0 00 0 11222 3566 57899999
Q ss_pred EEEccccch------------------HHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccC--CCCCcEEEe
Q psy17416 199 IQESVPEIL------------------QIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHS--THRSQFIVA 252 (290)
Q Consensus 199 Vieavpe~~------------------~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~--~~~~r~ig~ 252 (290)
||.|++... .+++++++++.++++ ++++. ||.... ++.++... ..|.|++|+
T Consensus 73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~-~~~~~~~~~~~~~~rvig~ 146 (309)
T 1hyh_A 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDV-ITALFQHVTGFPAHKVIGT 146 (309)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHH-HHHHHHHHHCCCGGGEEEC
T ss_pred EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHH-HHHHHHHhcCCCHHHEeec
Confidence 999999744 346788899998875 55443 443333 22333321 235677777
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-05 Score=76.69 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=92.6
Q ss_pred CCcHHhhcccCcEEEEcccC--------ChHHHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccC----CCCc--
Q psy17416 1 TPVLRECLEDAIFIQESVPE--------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHST----HRSQ-- 63 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e--------~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~----~~~r-- 63 (290)
|+|+++++++||+||.|||. |+....+++++|.+.+++++++ .+.|++++. +++..+. .+ +
T Consensus 75 ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iV-V~~STv~~gt~~~l~~~l~~~~~~g-~~~ 152 (478)
T 2y0c_A 75 STDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVI-VDKSTVPVGTAERVRAAVAEELAKR-GGD 152 (478)
T ss_dssp ECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEE-EECSCCCTTHHHHHHHHHHHHHHHT-TCC
T ss_pred ECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEE-EEeCCcCCCchHHHHHHHHHHhcCC-CCC
Confidence 46888899999999999999 6699999999999999999988 566788774 3333221 12 1
Q ss_pred eeeeccCCCCCCCCee---------eEeeCCCCCH----HHHHHHHHHHHHhCC--ccEEEecc-----ceeeEEecccc
Q psy17416 64 FIVAHPVNPPYFIPLV---------EIVPAAWTSE----RVITRTREIMTEIGM--KPVTLTTE-----IRGFALNRIHG 123 (290)
Q Consensus 64 ~~g~hf~~P~~~~~lv---------Eiv~~~~t~~----~~~~~~~~~~~~lgk--~~v~v~~d-----~~gf~~nri~G 123 (290)
.-..++++|....+.. .|+.|.. ++ +..+.+.+++..+++ .++.+ .+ ...++.|.+..
T Consensus 153 ~~~~v~~~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~di~~ae~~Kl~~N~~~a 230 (478)
T 2y0c_A 153 QMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLY-MDVRSAEFTKYAANAMLA 230 (478)
T ss_dssp CCEEEEECCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEE-ECHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEc-CCHHHHHHHHHHHHHHHH
Confidence 1224688998877766 5776664 44 788889999988775 56666 44 34456666543
Q ss_pred h---hHHHHHHHHHHcCc
Q psy17416 124 L---IGQAWAMIFASAGY 138 (290)
Q Consensus 124 ~---~g~~ia~~~~~~G~ 138 (290)
. +..+++..+...|.
T Consensus 231 ~~ia~~nE~~~la~~~Gi 248 (478)
T 2y0c_A 231 TRISFMNELANLADRFGA 248 (478)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 2 34445555555553
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-06 Score=76.09 Aligned_cols=135 Identities=12% Similarity=0.058 Sum_probs=89.5
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||+.+|..+...|++|..||++++..+ .....+++++.
T Consensus 124 tvGIIG---lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~------------------------------~~~~~~~l~el 170 (290)
T 3gvx_A 124 ALGILG---YGGIGRRVAHLAKAFGMRVIAYTRSSVDQN------------------------------VDVISESPADL 170 (290)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHHTCEEEEECSSCCCTT------------------------------CSEECSSHHHH
T ss_pred hheeec---cCchhHHHHHHHHhhCcEEEEEeccccccc------------------------------cccccCChHHH
Confidence 446665 799999999999999999999999864211 01235688889
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccCC-CCCcEEEe-----ccCCCCCCCCeE
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHST-HRSQFIVA-----HPVNPPYFIPLV 264 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~~-~~~r~ig~-----Hf~~p~~~~~lv 264 (290)
+++||+|+.++|-..+.+.-+-++..+.++++++++..+.+- .-..+.+.+. ..-...++ +|..|.+..+.+
T Consensus 171 l~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nv 250 (290)
T 3gvx_A 171 FRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNA 250 (290)
T ss_dssp HHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSE
T ss_pred hhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhh
Confidence 999999999999766554444466777899999987333222 2335554443 22222333 334566777888
Q ss_pred EEecCCC--CCHHHHHHH
Q psy17416 265 EIVPAAW--TSERVITRT 280 (290)
Q Consensus 265 Evv~~~~--t~~e~~~~~ 280 (290)
-++|+-. .+++..+++
T Consensus 251 ilTPHiag~~t~e~~~~~ 268 (290)
T 3gvx_A 251 ILSPHVAGGMSGEIMDIA 268 (290)
T ss_dssp EECCSCSSCBTTBCCHHH
T ss_pred hcCccccCCccchHHHHH
Confidence 8999843 344444433
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.2e-05 Score=72.20 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=85.3
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-.-|+++ +|.||..+|..+...|++|..||++++.. .+.+ .| +.. .++++
T Consensus 143 ~~vgIIG---~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~-----------~g--------------~~~-~~l~e 192 (313)
T 2ekl_A 143 KTIGIVG---FGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEK-----------IN--------------AKA-VSLEE 192 (313)
T ss_dssp CEEEEES---CSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHH-----------TT--------------CEE-CCHHH
T ss_pred CEEEEEe---eCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHh-----------cC--------------cee-cCHHH
Confidence 3456665 79999999999999999999999987642 1211 11 111 36778
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCCC-C-----cEEEeccCC-----CC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHR-S-----QFIVAHPVN-----PP 258 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~~-~-----r~ig~Hf~~-----p~ 258 (290)
.+++||+|+.++|...+.+.-+-++..+.++++++++..+++-.+. .+.+.+... - .++..||.. |.
T Consensus 193 ll~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L 272 (313)
T 2ekl_A 193 LLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELEL 272 (313)
T ss_dssp HHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHH
T ss_pred HHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchH
Confidence 8899999999999665432212144556789999887444433232 455554321 1 233344432 22
Q ss_pred CCCCeEEEecCCCC-CHHHHHHH
Q psy17416 259 YFIPLVEIVPAAWT-SERVITRT 280 (290)
Q Consensus 259 ~~~~lvEvv~~~~t-~~e~~~~~ 280 (290)
+..+.+-++|+... +.+..+++
T Consensus 273 ~~~~nviltPH~~~~t~~~~~~~ 295 (313)
T 2ekl_A 273 LKHERVIVTTHIGAQTKEAQKRV 295 (313)
T ss_dssp HHSTTEEECCSCTTCSHHHHHHH
T ss_pred hhCCCEEECCccCcCcHHHHHHH
Confidence 33567889998544 34444333
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.92 E-value=6.4e-05 Score=67.99 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=69.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC-CCC-CChhhhhccc-ccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL-KGS-LSPEEQFGLI-SGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~-~~~-~~~~~~~~~i-~~~~~l~~~l~~aDl 198 (290)
+|.||..+|..+...|++|.++|++++.++...+. .+.. .+. .. ...++ ..+++++++++++|+
T Consensus 12 ~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~ 78 (359)
T 1bg6_A 12 LGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR----------GAIIAEGPGLA---GTAHPDLLTSDIGLAVKDADV 78 (359)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----------TSEEEESSSCC---EEECCSEEESCHHHHHTTCSE
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhc----------CCeEEeccccc---cccccceecCCHHHHHhcCCE
Confidence 79999999999999999999999999877655441 0110 000 00 01223 245788887899999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
||.|+|.... .++++++.+.+++++++++.
T Consensus 79 vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 79 ILIVVPAIHH--ASIAANIASYISEGQLIILN 108 (359)
T ss_dssp EEECSCGGGH--HHHHHHHGGGCCTTCEEEES
T ss_pred EEEeCCchHH--HHHHHHHHHhCCCCCEEEEc
Confidence 9999998874 68889999999999977755
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.8e-05 Score=71.22 Aligned_cols=91 Identities=9% Similarity=0.126 Sum_probs=71.3
Q ss_pred HhhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCcE--EeecCCCCChHHHhccc-C-CCCceee
Q psy17416 5 RECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTI--LSSSTSSFLPSVLSEHS-T-HRSQFIV 66 (290)
Q Consensus 5 ~~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~i--~~snts~~~~~~l~~~~-~-~~~r~~g 66 (290)
.+++++||+||.|++. +.++++++++++.+.+ |+++ ++||+++.. ++++... . .|+|++|
T Consensus 62 ~~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG 139 (319)
T 1a5z_A 62 YADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVL-TYFFLKESGMDPRKVFG 139 (319)
T ss_dssp GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHH-HHHHHHHHTCCTTTEEE
T ss_pred HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHH-HHHHHHHhCCChhhEEe
Confidence 3578999999999996 3468999999999997 5664 478887763 5555333 3 6899999
Q ss_pred eccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEe
Q psy17416 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN 119 (290)
Q Consensus 67 ~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~n 119 (290)
+ .|..++......+++.+|..| ++.++|+++
T Consensus 140 ~------------------~t~ld~~r~~~~la~~lgv~~----~~v~~~v~G 170 (319)
T 1a5z_A 140 S------------------GTVLDTARLRTLIAQHCGFSP----RSVHVYVIG 170 (319)
T ss_dssp C------------------TTHHHHHHHHHHHHHHHTCCG----GGEECCEEB
T ss_pred e------------------CccHHHHHHHHHHHHHhCcCH----HHceEEEEe
Confidence 9 688889999999999999754 577788865
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.12 E-value=1.6e-06 Score=72.89 Aligned_cols=139 Identities=12% Similarity=0.112 Sum_probs=83.3
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-|+++ +|.||..++..+...|++|.+|+++++ .+.... . ++... ++.+++
T Consensus 22 I~iIG---~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~-----------~--------------g~~~~-~~~~~~ 71 (201)
T 2yjz_A 22 VCIFG---TGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLP-----------R--------------GAEVL-CYSEAA 71 (201)
Confidence 35555 799999999999999999999999876 322110 0 11223 556678
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--------HHHhccCCCCCcEEEeccCCCCCCCC---
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--------SVLSEHSTHRSQFIVAHPVNPPYFIP--- 262 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--------~~la~~~~~~~r~ig~Hf~~p~~~~~--- 262 (290)
+++|+||.|+|.. .. ..++ ++.. ..++++|++-+.+++. +.+.+.+.. .+++..=+..|.....
T Consensus 72 ~~aDvVilav~~~-~~-~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~ 146 (201)
T 2yjz_A 72 SRSDVIVLAVHRE-HY-DFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGT 146 (201)
Confidence 8999999999965 23 3454 4544 3467788776666653 333333321 2232111111111111
Q ss_pred e-----EEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 263 L-----VEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 263 l-----vEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
+ + ++.+. +++..+++.++++.+|++
T Consensus 147 l~g~~~~-~~~g~--~~~~~~~v~~ll~~~G~~ 176 (201)
T 2yjz_A 147 LDASRQV-FVCGN--DSKAKDRVMDIARTLGLT 176 (201)
Confidence 0 2 23232 578889999999999973
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-05 Score=67.28 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=78.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCC-Ceee
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-PLVE 80 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~-~lvE 80 (290)
+|++++++++|+||.|++.+ ...+++.++...+ ++.++.|.+++++...+.+.+....+++..-...|.... .+.-
T Consensus 50 ~~~~~~~~~~D~vi~~v~~~--~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~ 126 (262)
T 2rcy_A 50 SSNEELARHCDIIVCAVKPD--IAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFI 126 (262)
T ss_dssp SCHHHHHHHCSEEEECSCTT--THHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEE
T ss_pred CCHHHHHhcCCEEEEEeCHH--HHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEE
Confidence 57888899999999999954 5778999998888 688899999999999888877553344311112233222 2333
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
++.+..++++.++.+..++..+|+ ++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~ll~~~G~-~~~~~ 155 (262)
T 2rcy_A 127 YCSNKNVNSTDKKYVNDIFNSCGI-IHEIK 155 (262)
T ss_dssp EEECTTCCHHHHHHHHHHHHTSEE-EEECC
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence 556777899999999999999998 88774
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.7e-05 Score=69.85 Aligned_cols=150 Identities=13% Similarity=0.059 Sum_probs=92.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC-CC-CCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL-KG-SLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~-~~-~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.||..+|..+.+.|++|.+|++++. +...+ .|.. .+ ..... ....+..+++++++..++|+|
T Consensus 10 aGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~-----------~Gl~~~~~~~g~~-~~~~~~~~~~~~~~~~~~DlV 75 (320)
T 3i83_A 10 TGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKA-----------KGIRIRSATLGDY-TFRPAAVVRSAAELETKPDCT 75 (320)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHH-----------HCEEEEETTTCCE-EECCSCEESCGGGCSSCCSEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHh-----------CCcEEeecCCCcE-EEeeeeeECCHHHcCCCCCEE
Confidence 799999999999999999999999862 22222 2321 10 00000 011344567777655599999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH-HHHhccCCCCCcEEEe-ccC-----CCCCC---C-CeEEEec
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIVA-HPV-----NPPYF---I-PLVEIVP 268 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~la~~~~~~~r~ig~-Hf~-----~p~~~---~-~lvEvv~ 268 (290)
|.|+|... -.++++++.+.++++++|++...++.. +.+++.++.. ++++. =++ .|-.. . .-+-+-.
T Consensus 76 ilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~ 152 (320)
T 3i83_A 76 LLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYGRLMLGN 152 (320)
T ss_dssp EECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCCEEEEec
Confidence 99999876 347889999999999988888888864 5566655432 44432 111 11110 0 0112222
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q psy17416 269 AAWTSERVITRTREIMTEIG 288 (290)
Q Consensus 269 ~~~t~~e~~~~~~~~~~~lg 288 (290)
-+..+.+..+.+.+++..-|
T Consensus 153 ~~~~~~~~~~~l~~~l~~~~ 172 (320)
T 3i83_A 153 YPGGVSERVKTLAAAFEEAG 172 (320)
T ss_dssp SSSCCCHHHHHHHHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCC
Confidence 22344567777888877655
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.5e-05 Score=72.13 Aligned_cols=138 Identities=16% Similarity=0.085 Sum_probs=85.5
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
..-|+++ +|.||..+|..+...|++|..||+++.. +.+.+ .| +.. .++++
T Consensus 166 ~tvgIIG---lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g--------------~~~-~~l~e 215 (335)
T 2g76_A 166 KTLGILG---LGRIGREVATRMQSFGMKTIGYDPIISP-EVSAS-----------FG--------------VQQ-LPLEE 215 (335)
T ss_dssp CEEEEEC---CSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHH-----------TT--------------CEE-CCHHH
T ss_pred CEEEEEe---ECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-----------cC--------------cee-CCHHH
Confidence 3456665 7999999999999999999999998653 22111 11 111 36788
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CC-----cEEEeccC--CCCCCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RS-----QFIVAHPV--NPPYFI 261 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~-----r~ig~Hf~--~p~~~~ 261 (290)
.+++||+|+.++|-..+.+.-+-++..+.++++++++..+++-.+. .+...+.. .- .++..||. .|.+..
T Consensus 216 ll~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~ 295 (335)
T 2g76_A 216 IWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDH 295 (335)
T ss_dssp HGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHS
T ss_pred HHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhC
Confidence 8999999999999876544333355667899999987433333222 44444431 11 22333431 222345
Q ss_pred CeEEEecCCCC-CHHHHHH
Q psy17416 262 PLVEIVPAAWT-SERVITR 279 (290)
Q Consensus 262 ~lvEvv~~~~t-~~e~~~~ 279 (290)
+.+-++|+... ..+..++
T Consensus 296 ~nvilTPH~~~~t~e~~~~ 314 (335)
T 2g76_A 296 ENVISCPHLGASTKEAQSR 314 (335)
T ss_dssp TTEEECSSCTTCBHHHHHH
T ss_pred CCEEECCcCCCCCHHHHHH
Confidence 67888987533 3444443
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.1e-05 Score=71.94 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=85.3
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-+-|+++ +|.||+.+|..+...|++|..||+++... . .......++++
T Consensus 157 ktvGIIG---lG~IG~~vA~~l~~~G~~V~~yd~~~~~~--------------------~---------~~~~~~~sl~e 204 (416)
T 3k5p_A 157 KTLGIVG---YGNIGSQVGNLAESLGMTVRYYDTSDKLQ--------------------Y---------GNVKPAASLDE 204 (416)
T ss_dssp CEEEEEC---CSHHHHHHHHHHHHTTCEEEEECTTCCCC--------------------B---------TTBEECSSHHH
T ss_pred CEEEEEe---eCHHHHHHHHHHHHCCCEEEEECCcchhc--------------------c---------cCcEecCCHHH
Confidence 3456665 79999999999999999999999863200 0 11123468899
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCCCC-cEEEec-----------cC-C
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRS-QFIVAH-----------PV-N 256 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~~~-r~ig~H-----------f~-~ 256 (290)
.+++||+|+.++|...+.+.-+-++....++++++++..+.+ .....+.+.+.... .-.++= +| .
T Consensus 205 ll~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~ 284 (416)
T 3k5p_A 205 LLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFST 284 (416)
T ss_dssp HHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCC
T ss_pred HHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccch
Confidence 999999999999987665444445666779999999743333 33335555553221 111221 11 3
Q ss_pred CCCCCCeEEEecC-CCCCHHHHHHH
Q psy17416 257 PPYFIPLVEIVPA-AWTSERVITRT 280 (290)
Q Consensus 257 p~~~~~lvEvv~~-~~t~~e~~~~~ 280 (290)
|.+..+.|-++|+ .....++.+++
T Consensus 285 pL~~~~nvilTPHig~~T~ea~~~~ 309 (416)
T 3k5p_A 285 PLQGLENVILTPHIGGSTEEAQERI 309 (416)
T ss_dssp TTTTCTTEEECCSCTTCCHHHHHHH
T ss_pred hHhcCCCEEECCCCCCCCHHHHHHH
Confidence 4456677899998 34455555443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.6e-06 Score=72.22 Aligned_cols=137 Identities=12% Similarity=0.143 Sum_probs=86.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYFI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~~ 76 (290)
+|+++++++||+||.|+|++..++.-+| +++.+.+++++++...+ +.++. ++++.+.. .|.||+. .+..
T Consensus 56 ~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~s-t~~~~~~~~~~~~~~~----~g~~~~~-~pv~ 129 (303)
T 3g0o_A 56 ASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSS-TISSADAQEIAAALTA----LNLNMLD-APVS 129 (303)
T ss_dssp SSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECS-CCCHHHHHHHHHHHHT----TTCEEEE-CCEE
T ss_pred CCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecC-CCCHHHHHHHHHHHHH----cCCeEEe-CCCC
Confidence 5788899999999999999888876655 67778888888886444 44443 45544422 1445543 1211
Q ss_pred ---------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccceee------EEecccchhHH---HHHHHHHHcCc
Q psy17416 77 ---------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF------ALNRIHGLIGQ---AWAMIFASAGY 138 (290)
Q Consensus 77 ---------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf------~~nri~G~~g~---~ia~~~~~~G~ 138 (290)
.+.-++. .+++.++.+..+++.+|+.++.+ .+.+|. +.|.+.+.+.. ++.....+.|
T Consensus 130 g~~~~a~~g~l~~~~g---g~~~~~~~~~~ll~~~g~~~~~~-~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G- 204 (303)
T 3g0o_A 130 GGAVKAAQGEMTVMAS---GSEAAFTRLKPVLDAVASNVYRI-SDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAG- 204 (303)
T ss_dssp SCHHHHHTTCEEEEEE---CCHHHHHHHHHHHHHHEEEEEEE-ESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CChhhhhcCCeEEEeC---CCHHHHHHHHHHHHHHCCCEEEC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 2344443 36899999999999999988887 453432 33443333322 2223333445
Q ss_pred eeEEecCCHHHHHHHHH
Q psy17416 139 KVSLYDVLSEQIENAKN 155 (290)
Q Consensus 139 ~V~l~d~~~e~l~~a~~ 155 (290)
.+++.+.+++.
T Consensus 205 ------~d~~~~~~~~~ 215 (303)
T 3g0o_A 205 ------IPLDVMYDVVT 215 (303)
T ss_dssp ------CCHHHHHHHHT
T ss_pred ------CCHHHHHHHHH
Confidence 66777666553
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.2e-05 Score=69.75 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=84.6
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccCCCCceeeeccCCCC-----
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPP----- 73 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~~~~r~~g~hf~~P~----- 73 (290)
++|++++++ ||+||.|+|++..++. +++++.+.+++++++...++..+.+ ++++.+.. + |.||+..|
T Consensus 62 ~~~~~~~~~-aDvvi~~vp~~~~~~~-v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~--~--g~~~~~~pv~g~~ 135 (296)
T 3qha_A 62 ADSVADVAA-ADLIHITVLDDAQVRE-VVGELAGHAKPGTVIAIHSTISDTTAVELARDLKA--R--DIHIVDAPVSGGA 135 (296)
T ss_dssp CSSHHHHTT-SSEEEECCSSHHHHHH-HHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGG--G--TCEEEECCEESCH
T ss_pred cCCHHHHHh-CCEEEEECCChHHHHH-HHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHH--c--CCEEEeCCCcCCH
Confidence 468899999 9999999999888765 4488888888888776554433332 45554432 1 44554322
Q ss_pred C---CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee------eEEecccchhHH---HHHHHHHHcCceeE
Q psy17416 74 Y---FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG------FALNRIHGLIGQ---AWAMIFASAGYKVS 141 (290)
Q Consensus 74 ~---~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g------f~~nri~G~~g~---~ia~~~~~~G~~V~ 141 (290)
. .-.+..++.+ +++.++.+..+++.+|+.++.+ ++ +| ++.|.+.+.+.. ++.....+.|
T Consensus 136 ~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~-g~-~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G---- 206 (296)
T 3qha_A 136 AAAARGELATMVGA---DREVYERIKPAFKHWAAVVIHA-GE-PGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG---- 206 (296)
T ss_dssp HHHHHTCEEEEEEC---CHHHHHHHHHHHHHHEEEEEEE-ES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHhcCCccEEecC---CHHHHHHHHHHHHHHcCCeEEc-CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 1 1234555554 6899999999999999988887 44 44 344544443322 3333334445
Q ss_pred EecCCHHHH
Q psy17416 142 LYDVLSEQI 150 (290)
Q Consensus 142 l~d~~~e~l 150 (290)
.+++.+
T Consensus 207 ---~d~~~~ 212 (296)
T 3qha_A 207 ---LDLQAL 212 (296)
T ss_dssp ---CCHHHH
T ss_pred ---CCHHHH
Confidence 677777
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.5e-05 Score=72.41 Aligned_cols=107 Identities=11% Similarity=0.167 Sum_probs=79.4
Q ss_pred CcHHhhcc----cCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCC--CChHHHhcccCCCCceeeeccCCCCCC
Q psy17416 2 PVLRECLE----DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYF 75 (290)
Q Consensus 2 ~~l~~~~~----~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~--~~~~~l~~~~~~~~r~~g~hf~~P~~~ 75 (290)
+|++++++ +||+||-|+| .....++++++..+ ++++|+...+|. .++..+.+... ..||++.|++..+..
T Consensus 56 ~~~~e~~~~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~ 131 (341)
T 3ktd_A 56 ADLEATLQRAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTAN 131 (341)
T ss_dssp SCHHHHHHHHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-
T ss_pred CCHHHHHHhcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccc
Confidence 46666665 4799999999 45677999999887 889988654433 23445655543 579999999886542
Q ss_pred C------------CeeeEeeCCCCCHH--------HHHHHHHHHHHhCCccEEEecc
Q psy17416 76 I------------PLVEIVPAAWTSER--------VITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 76 ~------------~lvEiv~~~~t~~~--------~~~~~~~~~~~lgk~~v~v~~d 112 (290)
. ..+-+++++.++++ .++.+.++++.+|..++.+..+
T Consensus 132 sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~ 188 (341)
T 3ktd_A 132 SGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVG 188 (341)
T ss_dssp CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHH
T ss_pred cchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHH
Confidence 1 23557788888888 9999999999999988887544
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.5e-05 Score=69.49 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=76.3
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..++..|+ +|.++|++++.++.....+.+.. . .....++..++|+++ +++||+|
T Consensus 29 aG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~------~--------~~~~~~i~~t~d~~~-~~daDiV 93 (330)
T 3ldh_A 29 CDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGS------L--------FLHTAKIVSGKDYSV-SAGSKLV 93 (330)
T ss_dssp TTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHG------G--------GSCCSEEEEESSSCS-CSSCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhh------h--------cccCCeEEEcCCHHH-hCCCCEE
Confidence 59999999999999997 89999999887654333233221 0 011245666778875 9999999
Q ss_pred EEc--------------cccchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHh-ccCCC-CCcEEEe
Q psy17416 200 QES--------------VPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLS-EHSTH-RSQFIVA 252 (290)
Q Consensus 200 iea--------------vpe~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la-~~~~~-~~r~ig~ 252 (290)
|.+ +.+|..+++++.+++.++++ ++++. ||-... ++.++ +.... |.|++|+
T Consensus 94 IitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P-~a~ilvvtNPvdi-~t~~~~k~sg~p~~rViG~ 162 (330)
T 3ldh_A 94 VITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP-DCLKELHPELGTD-KNKQDWKLSGLPMHRIIGS 162 (330)
T ss_dssp EECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHH-HHHHHHHHHCCCGGGEECC
T ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CceEEeCCCccHH-HHHHHHHHhCCCHHHeecc
Confidence 966 67788899999999999954 55443 332222 22222 22233 4678887
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.4e-05 Score=69.01 Aligned_cols=139 Identities=12% Similarity=-0.003 Sum_probs=86.0
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|++|..||+++.. +.+.+ . ++....++++.
T Consensus 162 tvGIIG---lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~--------------g~~~~~~l~el 212 (352)
T 3gg9_A 162 TLGIFG---YGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARA-----------D--------------GFAVAESKDAL 212 (352)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHH-----------T--------------TCEECSSHHHH
T ss_pred EEEEEe---ECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHh-----------c--------------CceEeCCHHHH
Confidence 445555 7999999999999999999999998632 22211 1 12234688889
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCC-CCCcEEEecc--------CCCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHST-HRSQFIVAHP--------VNPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~-~~~r~ig~Hf--------~~p~~~~ 261 (290)
+++||+|+.++|-..+.+.-+-++..+.++++++++..+.+-. -..+.+.+. ..-...++=. .+|.+..
T Consensus 213 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~ 292 (352)
T 3gg9_A 213 FEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRM 292 (352)
T ss_dssp HHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGC
T ss_pred HhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcC
Confidence 9999999999997765554444566778999999873332222 224443332 1112122221 2334455
Q ss_pred CeEEEecCCC-CCHHHHHHH
Q psy17416 262 PLVEIVPAAW-TSERVITRT 280 (290)
Q Consensus 262 ~lvEvv~~~~-t~~e~~~~~ 280 (290)
+.|-++|+-. ...++.+++
T Consensus 293 ~nvilTPHia~~t~e~~~~~ 312 (352)
T 3gg9_A 293 ENCICTPHIGYVERESYEMY 312 (352)
T ss_dssp TTEEECCSCTTCBHHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHH
Confidence 6788888743 344444443
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00031 Score=65.74 Aligned_cols=95 Identities=22% Similarity=0.150 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCh-hh------hhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSP-EE------QFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~-~~------~~~~i~~~~~l~~~l~ 194 (290)
+|.+|.-.|..+++.|++|+.+|.+++.++...+ |...=..+. ++ ..++++++++++++++
T Consensus 29 lGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~------------G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~ 96 (444)
T 3vtf_A 29 LGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRA------------GRPHIYEPGLEEALGRALSSGRLSFAESAEEAVA 96 (444)
T ss_dssp CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT------------TCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHC------------CCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHh
Confidence 6999999999999999999999999998876543 211100010 11 2256888999999999
Q ss_pred cCcEEEEccccc--------hHHHHHHHHHHhhhCC---CCcEEE
Q psy17416 195 DAIFIQESVPEI--------LQIKHQVYRAIDIFMS---SNTILS 228 (290)
Q Consensus 195 ~aDlVieavpe~--------~~~k~~~~~~l~~~~~---~~~ii~ 228 (290)
+||++|.|||-. +.--....+.+.+.++ ++.+++
T Consensus 97 ~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV 141 (444)
T 3vtf_A 97 ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVV 141 (444)
T ss_dssp TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEE
T ss_pred cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 999999999853 2233455566666664 345544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.7e-05 Score=69.99 Aligned_cols=100 Identities=8% Similarity=0.041 Sum_probs=70.8
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF 75 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~ 75 (290)
++|+++++++||+||.|+|++..++.-+| +++.+.+++++++... |+.++. ++++.... .|.||+.. +.
T Consensus 48 ~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~----~g~~~~~~-pv 121 (287)
T 3pef_A 48 AATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVA----KGGRFLEA-PV 121 (287)
T ss_dssp CSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHH----TTCEEEEC-CE
T ss_pred cCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHH----hCCEEEEC-CC
Confidence 36889999999999999999988887766 7888888888887655 444444 44444321 14454431 11
Q ss_pred C---------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 76 I---------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 76 ~---------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+ .+.-++.+ ++++++.+..+++.+|+.++.+
T Consensus 122 ~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~ 161 (287)
T 3pef_A 122 SGSKKPAEDGTLIILAAG---DRNLYDEAMPGFEKMGKKIIHL 161 (287)
T ss_dssp ECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEEC
T ss_pred cCCHHHHhcCCEEEEEeC---CHHHHHHHHHHHHHhCCCeEEe
Confidence 1 23444443 6889999999999999988877
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.1e-06 Score=73.36 Aligned_cols=105 Identities=11% Similarity=0.035 Sum_probs=75.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHH--HHhhcCCCcEEe--ecCCCCChHHHhccc-CCCCceeeeccCCCC---
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILS--SSTSSFLPSVLSEHS-THRSQFIVAHPVNPP--- 73 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~--~~~~~~~~~i~~--snts~~~~~~l~~~~-~~~~r~~g~hf~~P~--- 73 (290)
++++++++++|+|+.|+++...++.-+... +-+.+.+++++. ||++.....++++.+ .++.++++.++++.+
T Consensus 78 ~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~ 157 (316)
T 2uyy_A 78 RTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLS 157 (316)
T ss_dssp SCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHH
T ss_pred CCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHH
Confidence 578888999999999999988887655432 224566776654 443333356777766 356789998887543
Q ss_pred CCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 74 YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 74 ~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
....+++++.+ +++.++.+.+++..+|+.++.+
T Consensus 158 ~~g~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~ 190 (316)
T 2uyy_A 158 NDGMLVILAAG---DRGLYEDCSSCFQAMGKTSFFL 190 (316)
T ss_dssp HHTCEEEEEEE---CHHHHHHTHHHHHHHEEEEEEC
T ss_pred hhCCEEEEeCC---CHHHHHHHHHHHHHhcCCEEEe
Confidence 23456777766 5788999999999999977765
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.7e-05 Score=66.57 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=69.4
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|.+++..++..|. +|.++|++++.++.....+.+. .... + ...+++.+..+++++||+|
T Consensus 14 aG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~------~~~~-~--------~~~~i~~~~~~al~~aDvV 78 (316)
T 1ldn_A 14 AGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG------KVFA-P--------KPVDIWHGDYDDCRDADLV 78 (316)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH------TTSS-S--------SCCEEEECCGGGTTTCSEE
T ss_pred cCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH------hhhc-C--------CCeEEEcCcHHHhCCCCEE
Confidence 69999999999988775 8999999987443211111111 0000 0 0112222334579999999
Q ss_pred EEc--------------cccchHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHhccC----C-CCCcEEEe
Q psy17416 200 QES--------------VPEILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLSEHS----T-HRSQFIVA 252 (290)
Q Consensus 200 iea--------------vpe~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la~~~----~-~~~r~ig~ 252 (290)
|++ +.++..+++++.+++.+++++..++. || |+..++..+ . .|.|++|+
T Consensus 79 iia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN----Pv~~~~~~~~~~s~~p~~rviG~ 147 (316)
T 1ldn_A 79 VICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN----PVDILTYATWKFSGLPHERVIGS 147 (316)
T ss_dssp EECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS----SHHHHHHHHHHHHTCCGGGEEEC
T ss_pred EEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC----chHHHHHHHHHHhCCCHHHEEec
Confidence 999 55666899999999999975443333 33 444333222 2 24678777
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.4e-05 Score=66.12 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=85.1
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||+.+|..+...|++|..||++++. +.+.+ .| +.. .++++.
T Consensus 144 ~vgIiG---~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g--------------~~~-~~l~el 193 (307)
T 1wwk_A 144 TIGIIG---FGRIGYQVAKIANALGMNILLYDPYPNE-ERAKE-----------VN--------------GKF-VDLETL 193 (307)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHH-----------TT--------------CEE-CCHHHH
T ss_pred eEEEEc---cCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhh-----------cC--------------ccc-cCHHHH
Confidence 445665 7999999999999999999999998764 22221 11 111 367788
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCc-----EEEeccC---CCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQ-----FIVAHPV---NPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r-----~ig~Hf~---~p~~~~ 261 (290)
+++||+|+.++|...+.+.-+-++..+.++++++++..+++-.+. .+...+. ..-. +.+.||. .|.+..
T Consensus 194 l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~ 273 (307)
T 1wwk_A 194 LKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKF 273 (307)
T ss_dssp HHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGC
T ss_pred HhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhC
Confidence 899999999999765433322244556789999887444432222 4444442 1222 2333332 233446
Q ss_pred CeEEEecCCCC-CHHHHHHH
Q psy17416 262 PLVEIVPAAWT-SERVITRT 280 (290)
Q Consensus 262 ~lvEvv~~~~t-~~e~~~~~ 280 (290)
+.+-++|+... +.+...++
T Consensus 274 ~nviltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 274 DNVVLTPHIGASTVEAQERA 293 (307)
T ss_dssp TTEEECSSCTTCBHHHHHHH
T ss_pred CCEEECCccccCcHHHHHHH
Confidence 77889998644 34444333
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0001 Score=66.88 Aligned_cols=137 Identities=10% Similarity=-0.028 Sum_probs=85.4
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|.+|..||+++...+. . . ...+..++++.
T Consensus 175 tvGIIG---lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~--~-----------~--------------g~~~~~~l~el 224 (345)
T 4g2n_A 175 RLGIFG---MGRIGRAIATRARGFGLAIHYHNRTRLSHAL--E-----------E--------------GAIYHDTLDSL 224 (345)
T ss_dssp EEEEES---CSHHHHHHHHHHHTTTCEEEEECSSCCCHHH--H-----------T--------------TCEECSSHHHH
T ss_pred EEEEEE---eChhHHHHHHHHHHCCCEEEEECCCCcchhh--h-----------c--------------CCeEeCCHHHH
Confidence 445665 7999999999999999999999998632211 1 0 12234688899
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccCCCCCcEEE--ec-------cCCCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHSTHRSQFIV--AH-------PVNPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~~~~~r~ig--~H-------f~~p~~~~ 261 (290)
+++||+|+.++|-..+.+.-+-++..+.++++++++..+.+- .-..+.+.+... ++.| += ...|.+..
T Consensus 225 l~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~gA~LDVf~~EP~~~~pL~~~ 303 (345)
T 4g2n_A 225 LGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSK-HLFAAGLDVFANEPAIDPRYRSL 303 (345)
T ss_dssp HHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCTTTTSCCTTGGGC
T ss_pred HhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC-CceEEEecCCCCCCCCCchHHhC
Confidence 999999999999776554444456667899999987333222 233444444211 2222 11 12344455
Q ss_pred CeEEEecCCC-CCHHHHHHH
Q psy17416 262 PLVEIVPAAW-TSERVITRT 280 (290)
Q Consensus 262 ~lvEvv~~~~-t~~e~~~~~ 280 (290)
+.|-++|+-. ...++.+++
T Consensus 304 ~nvilTPHia~~t~e~~~~~ 323 (345)
T 4g2n_A 304 DNIFLTPHIGSATHETRDAM 323 (345)
T ss_dssp TTEEECCSCTTCBHHHHHHH
T ss_pred CCEEEcCccCcCCHHHHHHH
Confidence 6788888742 334444443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=4.6e-05 Score=68.21 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=71.0
Q ss_pred cchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..++.. |++|.++|++++.++.....+.+... ......++..++++++ +++||+|
T Consensus 8 aG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~-------------~~~~~~~i~~t~d~~~-l~~aDvV 73 (310)
T 1guz_A 8 AGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP-------------VGLFDTKVTGSNDYAD-TANSDIV 73 (310)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH-------------HHTCCCEEEEESCGGG-GTTCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh-------------cccCCcEEEECCCHHH-HCCCCEE
Confidence 689999999999885 78999999998766632211111100 0001234666778876 8999999
Q ss_pred EEccccc--------------hHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHH---Hhcc-CC-CCCcEEEe
Q psy17416 200 QESVPEI--------------LQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSV---LSEH-ST-HRSQFIVA 252 (290)
Q Consensus 200 ieavpe~--------------~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~---la~~-~~-~~~r~ig~ 252 (290)
|+|+|.. ..+.+++.+.+.+++++..++. || ++.. +... .. .|.|++|+
T Consensus 74 iiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN----P~~~~~~~~~~~~~~~~~rviG~ 142 (310)
T 1guz_A 74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN----PLDIMTHVAWVRSGLPKERVIGM 142 (310)
T ss_dssp EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS----SHHHHHHHHHHHHCSCGGGEEEE
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC----chHHHHHHHHHhcCCChHHEEEC
Confidence 9999642 2455677788888865444333 33 3332 2222 22 35688887
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.6e-05 Score=69.74 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=87.7
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF 75 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~ 75 (290)
++|+++++++||+||.|+|++..++.-+| +++...+.+++++...+ +.++. ++++.+. ++ |.||...|-.
T Consensus 68 ~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~--~~--g~~~v~~pv~ 142 (310)
T 3doj_A 68 CESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAIT--GK--GGRFVEGPVS 142 (310)
T ss_dssp CSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHH--HT--TCEEEECCEE
T ss_pred cCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHH--Hc--CCEEEeCCCC
Confidence 36889999999999999999888885554 67777788888775544 44443 4444432 11 5555542211
Q ss_pred --------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee------eEEecccchhHHH---HHHHHHHcCc
Q psy17416 76 --------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG------FALNRIHGLIGQA---WAMIFASAGY 138 (290)
Q Consensus 76 --------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g------f~~nri~G~~g~~---ia~~~~~~G~ 138 (290)
-.+.-++.| ++++++.+..+++.+|+.++.+ ++ +| ++.|.+.+.+... +.....+.|
T Consensus 143 g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~-g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G- 216 (310)
T 3doj_A 143 GSKKPAEDGQLIILAAG---DKALFEESIPAFDVLGKRSFYL-GQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSG- 216 (310)
T ss_dssp CCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEEC-SS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CChhHHhcCCeEEEEcC---CHHHHHHHHHHHHHhCCCEEEe-CC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 123444444 5889999999999999988887 44 44 4455544433322 223334445
Q ss_pred eeEEecCCHHHHHHHHH
Q psy17416 139 KVSLYDVLSEQIENAKN 155 (290)
Q Consensus 139 ~V~l~d~~~e~l~~a~~ 155 (290)
.+++.+.+++.
T Consensus 217 ------~d~~~~~~~~~ 227 (310)
T 3doj_A 217 ------LSSDTLLDILD 227 (310)
T ss_dssp ------SCHHHHHHHHH
T ss_pred ------CCHHHHHHHHH
Confidence 67777766654
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.71 E-value=9.8e-05 Score=69.90 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=48.2
Q ss_pred cchh--HHHHHHHHHHc----CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 122 HGLI--GQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~--g~~ia~~~~~~----G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
+|.+ |.+++..++.. |.+|.+||++++.++.+.......+.. .+ ...+|+.++|+.+++++
T Consensus 11 AGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~---~~----------~~~~I~~ttD~~eal~d 77 (480)
T 1obb_A 11 AGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE---VG----------ADLKFEKTMNLDDVIID 77 (480)
T ss_dssp TTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHH---TT----------CCCEEEEESCHHHHHTT
T ss_pred CCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhcc---CC----------CCcEEEEECCHHHHhCC
Confidence 4654 45555566532 789999999999888765543332221 10 12567778899778999
Q ss_pred CcEEEEccc
Q psy17416 196 AIFIQESVP 204 (290)
Q Consensus 196 aDlVieavp 204 (290)
||+||++++
T Consensus 78 AD~VIiaag 86 (480)
T 1obb_A 78 ADFVINTAM 86 (480)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999999995
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0001 Score=65.38 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=75.4
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC---hHHHhcccCCCCceeeeccCCCCCC----
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---PSVLSEHSTHRSQFIVAHPVNPPYF---- 75 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~---~~~l~~~~~~~~r~~g~hf~~P~~~---- 75 (290)
++++++++||+||-|||.+. ..++++++...+++++++...+| .+ +..+.+.. |.|+++.|++..+..
T Consensus 58 ~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~~~s-vk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~ 132 (298)
T 2pv7_A 58 VAESILANADVVIVSVPINL--TLETIERLKPYLTENMLLADLTS-VKREPLAKMLEVH--TGAVLGLHPMFGADIASMA 132 (298)
T ss_dssp GHHHHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCS-CCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCT
T ss_pred CHHHHhcCCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEECCC-CCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhc
Confidence 57788999999999999876 78899999998999998775544 34 33455443 579999998765432
Q ss_pred CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 76 IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 76 ~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
-..+-+.++. +++.++.+.+++..+|..++.+.
T Consensus 133 g~~~~l~~~~--~~~~~~~v~~l~~~~G~~~~~~~ 165 (298)
T 2pv7_A 133 KQVVVRCDGR--FPERYEWLLEQIQIWGAKIYQTN 165 (298)
T ss_dssp TCEEEEEEEE--CGGGTHHHHHHHHHTTCEEEECC
T ss_pred CCeEEEecCC--CHHHHHHHHHHHHHcCCEEEECC
Confidence 1233344443 78889999999999999887763
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.1e-05 Score=68.31 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=66.6
Q ss_pred HhhcccCcEEEEcc--c------------CChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccCCCCceeeec
Q psy17416 5 RECLEDAIFIQESV--P------------EILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHSTHRSQFIVAH 68 (290)
Q Consensus 5 ~~~~~~~d~viea~--~------------e~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~~~~r~~g~h 68 (290)
.+++++||+||.++ | +|.++++++++++.+++ |++++ +||++++....++... .|+|++|+
T Consensus 62 ~~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~- 138 (304)
T 2v6b_A 62 HSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS- 138 (304)
T ss_dssp GGGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC-
T ss_pred HHHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC-
Confidence 35899999999999 4 47889999999999996 77754 7998887665566655 78999998
Q ss_pred cCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 69 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 69 f~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.|.-++......+++.+|..|-.+
T Consensus 139 -----------------gt~Ld~~r~~~~la~~l~v~~~~v 162 (304)
T 2v6b_A 139 -----------------GTVLDSARFRHLMAQHAGVDGTHA 162 (304)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHTSCGGGE
T ss_pred -----------------CcCchHHHHHHHHHHHhCcCHHHc
Confidence 566677777777888898755433
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.3e-05 Score=70.89 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=69.7
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|++|..||+++...+.+.. .| +. ..++++.
T Consensus 147 tvGIIG---~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g--------------~~-~~~l~el 197 (330)
T 4e5n_A 147 TVGFLG---MGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR-----------LG--------------LR-QVACSEL 197 (330)
T ss_dssp EEEEEC---CSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-----------HT--------------EE-ECCHHHH
T ss_pred EEEEEe---eCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-----------cC--------------ce-eCCHHHH
Confidence 445565 7999999999999999999999998733222222 11 11 2368888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHS 243 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~ 243 (290)
+++||+|+.++|-..+.+.-+-++..+.++++++++..+.+- .-..+.+.+
T Consensus 198 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL 250 (330)
T 4e5n_A 198 FASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL 250 (330)
T ss_dssp HHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred HhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence 999999999999765544444466777899999997433332 233444444
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=7.9e-05 Score=67.12 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=72.8
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..++..|+ +|.++|++++.++.....+.+.... .+ ...++..++|+ +++++||+||
T Consensus 15 aG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~---~~----------~~~~v~~t~d~-~a~~~aDiVI 80 (324)
T 3gvi_A 15 SGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPV---DG----------FDAKFTGANDY-AAIEGADVVI 80 (324)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHH---HT----------CCCCEEEESSG-GGGTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhh---cC----------CCCEEEEeCCH-HHHCCCCEEE
Confidence 68999999999999998 9999999997765332222222110 00 01245556777 5799999999
Q ss_pred Eccc--------------cchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCC-CCcEEEec
Q psy17416 201 ESVP--------------EILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTH-RSQFIVAH 253 (290)
Q Consensus 201 eavp--------------e~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~-~~r~ig~H 253 (290)
.+.. .|..+.+++.+++.+++ +++++. ||-.......+...... |.|++|+.
T Consensus 81 iaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~ 149 (324)
T 3gvi_A 81 VTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA 149 (324)
T ss_dssp ECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred EccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec
Confidence 9863 24456677778888887 555544 44322222222222233 35777776
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.5e-05 Score=68.61 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=85.0
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-+-|+++ +|.||+.+|..+...|++|..||+++.. . . +......++++
T Consensus 146 ktlGiIG---lG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~------------------~------~~~~~~~~l~e 193 (404)
T 1sc6_A 146 KKLGIIG---YGHIGTQLGILAESLGMYVYFYDIENKL-----P------------------L------GNATQVQHLSD 193 (404)
T ss_dssp CEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCC-----C------------------C------TTCEECSCHHH
T ss_pred CEEEEEe---ECHHHHHHHHHHHHCCCEEEEEcCCchh-----c------------------c------CCceecCCHHH
Confidence 3456665 7999999999999999999999986521 0 0 11223467888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCH--HHHhccCCCC-C-----cEEEeccC-------C
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHSTHR-S-----QFIVAHPV-------N 256 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~la~~~~~~-~-----r~ig~Hf~-------~ 256 (290)
.+++||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+ ..+.+.+... - .+...+|. +
T Consensus 194 ll~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~ 273 (404)
T 1sc6_A 194 LLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTS 273 (404)
T ss_dssp HHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTG
T ss_pred HHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccc
Confidence 999999999999987655443335566679999998733333222 2455544321 1 12222332 2
Q ss_pred CCCCCCeEEEecCCCC-CHHHHH
Q psy17416 257 PPYFIPLVEIVPAAWT-SERVIT 278 (290)
Q Consensus 257 p~~~~~lvEvv~~~~t-~~e~~~ 278 (290)
|.+..+.|-++|+-.. ..++.+
T Consensus 274 pL~~~~nvilTPHi~~~T~ea~~ 296 (404)
T 1sc6_A 274 PLAEFDNVLLTPHIGGSTQEAQE 296 (404)
T ss_dssp GGTTCTTEEEECCCSCCSHHHHH
T ss_pred hhhcCCCEEECCCCCCCcHHHHH
Confidence 4556788999998543 344433
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=65.67 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=60.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH-HHHHHHHH-HHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS-EQIENAKN-TIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~-e~l~~a~~-~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
+|.||..+|..++..|+ +|.++|+++ +...++.. .+.+... + .....++..+++++ ++++||+
T Consensus 16 aG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~-~------------~~~~~~i~~t~d~~-a~~~aDv 81 (315)
T 3tl2_A 16 AGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASP-V------------QGFDANIIGTSDYA-DTADSDV 81 (315)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHH-H------------HTCCCCEEEESCGG-GGTTCSE
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhh-h------------ccCCCEEEEcCCHH-HhCCCCE
Confidence 69999999999999999 999999994 43333322 1111100 0 00123455566765 6899999
Q ss_pred EEEccc--------------cchHHHHHHHHHHhhhCCCCcEE
Q psy17416 199 IQESVP--------------EILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 199 Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii 227 (290)
||++.. .|..+.+++.+++.++++...++
T Consensus 82 VIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vl 124 (315)
T 3tl2_A 82 VVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124 (315)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 999972 24456678888898887544433
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=5.2e-05 Score=68.97 Aligned_cols=140 Identities=18% Similarity=0.141 Sum_probs=86.2
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-.-|+++ +|.||+.+|..+...|++|..||++++.. .+.. .| +....++++
T Consensus 169 ~tvGIIG---~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~-----------~g--------------~~~~~~l~e 219 (347)
T 1mx3_A 169 ETLGIIG---LGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERA-----------LG--------------LQRVSTLQD 219 (347)
T ss_dssp CEEEEEC---CSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHH-----------HT--------------CEECSSHHH
T ss_pred CEEEEEe---ECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhh-----------cC--------------CeecCCHHH
Confidence 3456665 79999999999999999999999876421 1100 11 122357888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCCC-C-----cEEEeccC----CCCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTHR-S-----QFIVAHPV----NPPY 259 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~~-~-----r~ig~Hf~----~p~~ 259 (290)
.+++||+|+.++|-..+.+.-+-++..+.++++++++..+++ .....+.+.+... - .+...+|+ .|..
T Consensus 220 ll~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~ 299 (347)
T 1mx3_A 220 LLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 299 (347)
T ss_dssp HHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTT
T ss_pred HHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHH
Confidence 899999999999976543332325556688999988743333 2333555544311 1 12222332 2345
Q ss_pred CCCeEEEecCCC-CCHHHHHHH
Q psy17416 260 FIPLVEIVPAAW-TSERVITRT 280 (290)
Q Consensus 260 ~~~lvEvv~~~~-t~~e~~~~~ 280 (290)
..+.+-++|+-. .++++.+++
T Consensus 300 ~~~nvi~tPHia~~t~~~~~~~ 321 (347)
T 1mx3_A 300 DAPNLICTPHAAWYSEQASIEM 321 (347)
T ss_dssp TCSSEEECSSCTTCCHHHHHHH
T ss_pred hCCCEEEEchHHHHHHHHHHHH
Confidence 567888998754 345554443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.65 E-value=9.8e-06 Score=71.53 Aligned_cols=138 Identities=11% Similarity=0.068 Sum_probs=85.5
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF 75 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~P~~~ 75 (290)
++|+++++++||+||.|+|.+..++.-+| +.+.+.+++++++...+ +.++. +++..+.. .|.||...|-.
T Consensus 48 ~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~----~g~~~~~~pv~ 122 (287)
T 3pdu_A 48 ASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMS-TVDDETSTAIGAAVTA----RGGRFLEAPVS 122 (287)
T ss_dssp CSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECS-CCCHHHHHHHHHHHHH----TTCEEEECCEE
T ss_pred cCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECC-CCCHHHHHHHHHHHHH----cCCEEEECCcc
Confidence 36889999999999999999988877665 66777777887775443 34443 44444321 14555543311
Q ss_pred C--------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee--e----EEecccchhHH---HHHHHHHHcCc
Q psy17416 76 I--------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG--F----ALNRIHGLIGQ---AWAMIFASAGY 138 (290)
Q Consensus 76 ~--------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g--f----~~nri~G~~g~---~ia~~~~~~G~ 138 (290)
. .+.-++. .+++.++.+..+++.+|+.++.+ ++ +| . +.|.+...+.. ++.....+.|
T Consensus 123 g~~~~a~~g~l~~~~g---g~~~~~~~~~~ll~~~g~~~~~~-g~-~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G- 196 (287)
T 3pdu_A 123 GTKKPAEDGTLIILAA---GDQSLFTDAGPAFAALGKKCLHL-GE-VGQGARMKLVVNMIMGQMMTALGEGMALGRNCG- 196 (287)
T ss_dssp CCHHHHHHTCEEEEEE---ECHHHHHHTHHHHHHHEEEEEEC-SS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHhcCCEEEEEe---CCHHHHHHHHHHHHHhCCCEEEc-CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 1 1233333 36899999999999999988887 44 33 2 23443333322 2223334445
Q ss_pred eeEEecCCHHHHHHHHH
Q psy17416 139 KVSLYDVLSEQIENAKN 155 (290)
Q Consensus 139 ~V~l~d~~~e~l~~a~~ 155 (290)
.+++.+.++..
T Consensus 197 ------~~~~~~~~~~~ 207 (287)
T 3pdu_A 197 ------LDGGQLLEVLD 207 (287)
T ss_dssp ------CCHHHHHHHHH
T ss_pred ------CCHHHHHHHHH
Confidence 67777766655
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.64 E-value=5.5e-05 Score=66.87 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=73.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCC--ChHHHhcccCCCCceeeeccCC-CCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSF--LPSVLSEHSTHRSQFIVAHPVN-PPYFI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~--~~~~l~~~~~~~~r~~g~hf~~-P~~~~ 76 (290)
++++++++++|+|+.|+|.+..++.-+. .++...+++++++.+.++.. ...+|++.+..+ |.||++ |....
T Consensus 52 ~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~ 127 (301)
T 3cky_A 52 ENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK----GIDYVDAPVSGG 127 (301)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT----TCEEEECCEESH
T ss_pred CCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCC
Confidence 5788889999999999999988877665 37878889999999888776 345777665321 344442 22111
Q ss_pred -------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 77 -------PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 77 -------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
.+.-++.+ +++.++.+.+++..+|+.++.+.
T Consensus 128 ~~~a~~g~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~~ 165 (301)
T 3cky_A 128 TKGAEAGTLTIMVGA---SEAVFEKIQPVLSVIGKDIYHVG 165 (301)
T ss_dssp HHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHcCCeEEEECC---CHHHHHHHHHHHHHhcCCEEEeC
Confidence 12333333 78899999999999999877663
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00043 Score=62.65 Aligned_cols=135 Identities=12% Similarity=0.001 Sum_probs=76.0
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||+.+|..+...|++|..||++++. . . + .....++++.
T Consensus 173 tiGIIG---lG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~-----------~----~----------~~~~~sl~el 219 (340)
T 4dgs_A 173 RIGVLG---LGQIGRALASRAEAFGMSVRYWNRSTLS-----G-----------V----D----------WIAHQSPVDL 219 (340)
T ss_dssp EEEEEC---CSHHHHHHHHHHHTTTCEEEEECSSCCT-----T-----------S----C----------CEECSSHHHH
T ss_pred EEEEEC---CCHHHHHHHHHHHHCCCEEEEEcCCccc-----c-----------c----C----------ceecCCHHHH
Confidence 446665 7999999999999999999999998642 0 0 0 1234688889
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCC-CCcEEEeccCC-------CCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTH-RSQFIVAHPVN-------PPYFIP 262 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~-~~r~ig~Hf~~-------p~~~~~ 262 (290)
+++||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+. .+.+.+.. .-...++=-|. |.+..+
T Consensus 220 l~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~ 299 (340)
T 4dgs_A 220 ARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTP 299 (340)
T ss_dssp HHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSS
T ss_pred HhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCC
Confidence 999999999999776665555567777899999987443333332 44444432 22333333222 223345
Q ss_pred eEEEecCC-CCCHHHHHHH
Q psy17416 263 LVEIVPAA-WTSERVITRT 280 (290)
Q Consensus 263 lvEvv~~~-~t~~e~~~~~ 280 (290)
.|-++|+- ..+.++.+++
T Consensus 300 nvilTPHia~~t~e~~~~~ 318 (340)
T 4dgs_A 300 NTVLMPHQGSATVETRMAM 318 (340)
T ss_dssp SEEECSSCSSCCHHHHHHH
T ss_pred CEEEcCcCCcCCHHHHHHH
Confidence 67888874 3344444443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=2e-05 Score=70.62 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=61.0
Q ss_pred CCcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHh-cccC-CCC
Q psy17416 1 TPVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLS-EHST-HRS 62 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~-~~~~-~~~ 62 (290)
|+|+ +++++||+||+++ .+|.++++++++++++.+ |++++ +||..+.. +.++ .... .|+
T Consensus 62 t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~-t~~~~~~~~~~~~ 138 (309)
T 1ur5_A 62 TNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAM-TYLAAEVSGFPKE 138 (309)
T ss_dssp ESCG-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHH-HHHHHHHHCCCGG
T ss_pred CCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHH-HHHHHHHcCCCHH
Confidence 3677 7899999999997 788899999999999998 78755 67754432 2222 2222 367
Q ss_pred ceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 63 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 63 r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
|++|+ .|.-+.......+++.+|..|-
T Consensus 139 rviG~------------------gt~LD~~r~~~~la~~lgv~~~ 165 (309)
T 1ur5_A 139 RVIGQ------------------AGVLDAARYRTFIAMEAGVSVE 165 (309)
T ss_dssp GEEEC------------------CHHHHHHHHHHHHHHHHTCCGG
T ss_pred HEEEC------------------CcchHHHHHHHHHHHHhCCChh
Confidence 88876 2444556666777788887553
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=97.60 E-value=2.6e-05 Score=73.82 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=93.0
Q ss_pred CCcHHhhcccCcEEEEcccCChHHH-------------HHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCce
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIK-------------HQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQF 64 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K-------------~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~ 64 (290)
++|+++++++||+||.|||.....+ .++.+++.+.+++++++ .++|+.++. +++..+.... .
T Consensus 73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iV-V~~STv~~g~~~~l~~~l~~~~-~ 150 (467)
T 2q3e_A 73 STNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIV-TEKSTVPVRAAESIRRIFDANT-K 150 (467)
T ss_dssp ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEE-EECSCCCTTHHHHHHHHHHHTC-C
T ss_pred ECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEE-EECCcCCchHHHHHHHHHHHhC-C
Confidence 3678889999999999999876543 57788898888999887 566677765 3444442211 1
Q ss_pred eeec---cCCCCCCCCeee---------Ee-eCCC--CCHHHHHHHHHHHHHh-CCccEEEeccc-----eeeEEecccc
Q psy17416 65 IVAH---PVNPPYFIPLVE---------IV-PAAW--TSERVITRTREIMTEI-GMKPVTLTTEI-----RGFALNRIHG 123 (290)
Q Consensus 65 ~g~h---f~~P~~~~~lvE---------iv-~~~~--t~~~~~~~~~~~~~~l-gk~~v~v~~d~-----~gf~~nri~G 123 (290)
.+++ +++|....+-.. |+ .++. ++++..+.+.+++..+ |+.++.+ .+. ..++.|.+..
T Consensus 151 ~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~ae~~Kl~~N~~~a 229 (467)
T 2q3e_A 151 PNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILT-TNTWSSELSKLAANAFLA 229 (467)
T ss_dssp TTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEE-ECHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEe-cCHHHHHHHHHHHHHHHH
Confidence 1222 577877666554 44 4444 3788999999999998 7778877 442 3455666543
Q ss_pred h---hHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 124 L---IGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 124 ~---~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
. +..+++..+...| .+.+.+.++..
T Consensus 230 ~~ia~~nE~~~l~~~~G-------id~~~v~~~~~ 257 (467)
T 2q3e_A 230 QRISSINSISALCEATG-------ADVEEVATAIG 257 (467)
T ss_dssp HHHHHHHHHHHHHHHHT-------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-------cCHHHHHHHHc
Confidence 2 2334444444545 45555544443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=97.60 E-value=3.5e-05 Score=70.56 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=70.8
Q ss_pred ccceeeEEecccchhHHHHHHHHHHcCce-eEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCch
Q psy17416 111 TEIRGFALNRIHGLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 189 (290)
Q Consensus 111 ~d~~gf~~nri~G~~g~~ia~~~~~~G~~-V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l 189 (290)
+-+-|+++ +|.||..+|..+...|++ |..||+++...+.+.+ .| +....++
T Consensus 164 g~tvgIIG---~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~-----------~g--------------~~~~~~l 215 (364)
T 2j6i_A 164 GKTIATIG---AGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEK-----------VG--------------ARRVENI 215 (364)
T ss_dssp TCEEEEEC---CSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHH-----------TT--------------EEECSSH
T ss_pred CCEEEEEC---cCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHh-----------cC--------------cEecCCH
Confidence 34556666 799999999999999997 9999988644332222 11 1223578
Q ss_pred HhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccC
Q psy17416 190 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHS 243 (290)
Q Consensus 190 ~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~ 243 (290)
++.+++||+|+.++|...+.+.-+-++..+.++++++++..+.+ ..-..+.+.+
T Consensus 216 ~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL 271 (364)
T 2j6i_A 216 EELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAAL 271 (364)
T ss_dssp HHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred HHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHH
Confidence 88899999999999976544333334566778999988743333 2233455444
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0002 Score=67.73 Aligned_cols=117 Identities=10% Similarity=0.088 Sum_probs=71.5
Q ss_pred cchh-HHHHHHHHHHc-----CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 122 HGLI-GQAWAMIFASA-----GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~~-g~~ia~~~~~~-----G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
+|.+ +..++..++.. |.+|.+||++++.++......+..+.. .....++..++|+.+++++
T Consensus 36 aGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~-------------~~~~~~I~~t~D~~eal~~ 102 (472)
T 1u8x_X 36 GGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE-------------KAPDIEFAATTDPEEAFTD 102 (472)
T ss_dssp TTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH-------------HCTTSEEEEESCHHHHHSS
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-------------CCCCCEEEEECCHHHHHcC
Confidence 3444 55566566665 668999999998877654322222111 0112467778899888999
Q ss_pred CcEEEEccccch----------------------------------HHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHH
Q psy17416 196 AIFIQESVPEIL----------------------------------QIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVL 239 (290)
Q Consensus 196 aDlVieavpe~~----------------------------------~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~l 239 (290)
||+||.++|... .+-+++.+++.++++ ++++. ||--.+ +++.
T Consensus 103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P-~A~ii~~TNPvdi-~T~~ 180 (472)
T 1u8x_X 103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSP-DAWMLNYSNPAAI-VAEA 180 (472)
T ss_dssp CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSCHHH-HHHH
T ss_pred CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCC-CeEEEEeCCcHHH-HHHH
Confidence 999999998622 245677788888875 55554 332222 2333
Q ss_pred hccCCCCCcEEEec
Q psy17416 240 SEHSTHRSQFIVAH 253 (290)
Q Consensus 240 a~~~~~~~r~ig~H 253 (290)
......+.|++|+-
T Consensus 181 ~~k~~p~~rViG~c 194 (472)
T 1u8x_X 181 TRRLRPNSKILNIC 194 (472)
T ss_dssp HHHHSTTCCEEECC
T ss_pred HHHhCCCCCEEEeC
Confidence 33323345888874
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.58 E-value=8e-05 Score=67.01 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=72.0
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..++..|+ ++.++|++++.++.....+.+.... .....++..+++.+ ++++||+||
T Consensus 13 aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~-------------~~~~~~v~~t~d~~-a~~~aDvVI 78 (321)
T 3p7m_A 13 AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPI-------------EGVDFKVRGTNDYK-DLENSDVVI 78 (321)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHH-------------HTCCCCEEEESCGG-GGTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhh-------------cCCCcEEEEcCCHH-HHCCCCEEE
Confidence 69999999999999888 9999999987654322222211100 00012344456664 799999999
Q ss_pred Eccc--------------cchHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCC-CCcEEEec
Q psy17416 201 ESVP--------------EILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTH-RSQFIVAH 253 (290)
Q Consensus 201 eavp--------------e~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~-~~r~ig~H 253 (290)
.+.. .|..+.+++.+++.+++ |++++. ||-.......+...... |.|++|+.
T Consensus 79 i~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~ 147 (321)
T 3p7m_A 79 VTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMA 147 (321)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred EcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCCCHHHEEeec
Confidence 9852 35567778888899988 455444 43322222222223333 36788876
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.57 E-value=6.1e-05 Score=66.31 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=72.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHH--HHHhhcCCCcEEeecCCCCC--hHHHhcccCCCCceeeeccCCCCCC--
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPYF-- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~--~~~~~~~~~~i~~snts~~~--~~~l~~~~~~~~r~~g~hf~~P~~~-- 75 (290)
++++++++++|+|+.|+|.+..++.-+.. ++.+.+++++++.+.++..+ ..+|++.+.. + |+||++.|-.
T Consensus 50 ~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~--~--g~~~~~~p~~~~ 125 (295)
T 1yb4_A 50 ETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNE--M--GADYLDAPVSGG 125 (295)
T ss_dssp SSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHT--T--TEEEEECCEESH
T ss_pred CCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--c--CCeEEEccCCCC
Confidence 57888899999999999999887765543 67777889998886655533 3467766643 2 6677644321
Q ss_pred ------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 76 ------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 76 ------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
-.+.-++.+ +++.++.+..++..+|+.++.+.
T Consensus 126 ~~~a~~g~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~ 163 (295)
T 1yb4_A 126 EIGAREGTLSIMVGG---EQKVFDRVKPLFDILGKNITLVG 163 (295)
T ss_dssp HHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHcCCeEEEECC---CHHHHHHHHHHHHHhcCCEEEeC
Confidence 123444444 78899999999999999888773
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00022 Score=67.00 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=48.3
Q ss_pred cch--hHHHHHHHHHH----cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 122 HGL--IGQAWAMIFAS----AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 122 ~G~--~g~~ia~~~~~----~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
+|. +|.+++..++. .| +|.+||++++.+++... +.+. +.. ...+++.|+|+++++++
T Consensus 13 aGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~~~-------------l~~--~~~~I~~TtD~~eAl~d 75 (450)
T 3fef_A 13 GGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IGNH-------------SGN--GRWRYEAVSTLKKALSA 75 (450)
T ss_dssp TTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HHTT-------------STT--SCEEEEEESSHHHHHTT
T ss_pred CChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HHHH-------------Hhc--cCCeEEEECCHHHHhcC
Confidence 566 46788877775 46 99999999988776533 1111 111 33678889999999999
Q ss_pred CcEEEEccc
Q psy17416 196 AIFIQESVP 204 (290)
Q Consensus 196 aDlVieavp 204 (290)
||+||++++
T Consensus 76 ADfVI~air 84 (450)
T 3fef_A 76 ADIVIISIL 84 (450)
T ss_dssp CSEEEECCC
T ss_pred CCEEEeccc
Confidence 999999995
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.54 E-value=2.3e-05 Score=71.99 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=101.6
Q ss_pred hcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCC------CCeeeEeeCCCCC-----HHHHHHHHHHHHHhC
Q psy17416 35 FMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF------IPLVEIVPAAWTS-----ERVITRTREIMTEIG 103 (290)
Q Consensus 35 ~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~------~~lvEiv~~~~t~-----~~~~~~~~~~~~~lg 103 (290)
+...|+++..+...++-.-|. . .+=|+|+....---++ ..=+-|...+..+ +-++..+..+.++.|
T Consensus 38 l~~ad~li~~~~~~v~~~ll~-~--~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~g 114 (381)
T 3oet_A 38 LNHADALMVRSVTKVNESLLS-G--TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERDG 114 (381)
T ss_dssp HTTCSEEEECTTSCBSHHHHT-T--SCCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCEEEEECCCCCCCHHHHc-C--CCCEEEEEccccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhcC
Confidence 445666666443334444444 2 2467776655322221 1223344444443 334445566777776
Q ss_pred CccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccc
Q psy17416 104 MKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLI 183 (290)
Q Consensus 104 k~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i 183 (290)
. .+.+-+-|+++ +|.||+.+|..+...|++|..||+..+.. + .+
T Consensus 115 ~---~l~gktvGIIG---lG~IG~~vA~~l~a~G~~V~~~d~~~~~~-----------------~--~~----------- 158 (381)
T 3oet_A 115 F---SLRDRTIGIVG---VGNVGSRLQTRLEALGIRTLLCDPPRAAR-----------------G--DE----------- 158 (381)
T ss_dssp C---CGGGCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECHHHHHT-----------------T--CC-----------
T ss_pred C---ccCCCEEEEEe---ECHHHHHHHHHHHHCCCEEEEECCChHHh-----------------c--cC-----------
Confidence 4 23345567787 89999999999999999999999744211 0 00
Q ss_pred ccCCchHhhcccCcEEEEccccchH----HHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccC
Q psy17416 184 SGTPVLRECLEDAIFIQESVPEILQ----IKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHS 243 (290)
Q Consensus 184 ~~~~~l~~~l~~aDlVieavpe~~~----~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~ 243 (290)
....++++.+++||+|+.++|-..+ .+.-+-++....++++++++..+.+- .-..+...+
T Consensus 159 ~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL 224 (381)
T 3oet_A 159 GDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARL 224 (381)
T ss_dssp SCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred cccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 1136788899999999999996654 33333345566789999987333222 233555544
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.51 E-value=9.4e-05 Score=65.28 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=72.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCCh--HHHhcccCCCCceeeeccCCCCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLP--SVLSEHSTHRSQFIVAHPVNPPYFIP 77 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~--~~l~~~~~~~~r~~g~hf~~P~~~~~ 77 (290)
+|++++++++|+|+.|+|....++.-++ +++.+.+++++++.+.++..+. .+|++.+... |+||+.. +.++
T Consensus 53 ~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~-pv~~ 127 (299)
T 1vpd_A 53 STAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK----GVEMLDA-PVSG 127 (299)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT----TCEEEEC-CEES
T ss_pred CCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEe-cCCC
Confidence 5788889999999999999888876655 5777888999988665444432 3676665321 4555443 2221
Q ss_pred --------eeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 78 --------LVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 78 --------lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
-+.++.+. +++.++.+.+++..+|+.++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~g~~~~~~~ 166 (299)
T 1vpd_A 128 GEPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTG 166 (299)
T ss_dssp HHHHHHHTCEEEEEES--CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CHhHHhcCCEEEEeCC--CHHHHHHHHHHHHHHcCCeEEeC
Confidence 14555553 78899999999999999888763
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00077 Score=60.02 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHH-HHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIEN-AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~-a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
+|.+|..++..++..|+ +|.++|++++.++. +.+ +.+ +.. ... ..++..+++.+ ++++||+
T Consensus 15 aG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~-~~~--------~~~---~~~---~~~v~~~~~~~-~~~~aD~ 78 (319)
T 1lld_A 15 AGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD-MQH--------GSS---FYP---TVSIDGSDDPE-ICRDADM 78 (319)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH-HHH--------TGG---GST---TCEEEEESCGG-GGTTCSE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHH-HHh--------hhh---hcC---CeEEEeCCCHH-HhCCCCE
Confidence 69999999999999998 99999999876642 121 111 110 000 12333344554 6899999
Q ss_pred EEEccc--------------cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH-Hhcc-CC-CCCcEEEe
Q psy17416 199 IQESVP--------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV-LSEH-ST-HRSQFIVA 252 (290)
Q Consensus 199 Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-la~~-~~-~~~r~ig~ 252 (290)
||.++. ++..+++++++++.++ .+++++++.+-+..... ++.. .. .+.|++|+
T Consensus 79 Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~ 148 (319)
T 1lld_A 79 VVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS 148 (319)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence 999993 3456777889999886 67777766555554432 2221 12 24577765
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00012 Score=66.33 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=74.7
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHH-HHHhhcCCCcEEeecCCCCChHHHhcccCCCC--ceeeeccCCCCCC-CCe
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILSSSTSSFLPSVLSEHSTHRS--QFIVAHPVNPPYF-IPL 78 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~-~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~--r~~g~hf~~P~~~-~~l 78 (290)
|+++++++||+|+-|+|.... .++++ ++...+++++++.+. +++.+ .+.... .|. ++++.|+..|... ..+
T Consensus 65 ~~~e~~~~aDvVilavp~~~~--~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~-~~~~~~vv~~~P~gp~~a~~~l 139 (338)
T 1np3_A 65 DVKTAVAAADVVMILTPDEFQ--GRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVV-PRADLDVIMIAPKAPGHTVRSE 139 (338)
T ss_dssp CHHHHHHTCSEEEECSCHHHH--HHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSC-CCTTCEEEEEEESSCSHHHHHH
T ss_pred cHHHHHhcCCEEEEeCCcHHH--HHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhc-CCCCcEEEeccCCCCchhHHHH
Confidence 677889999999999998875 78898 998899999999876 45555 443333 343 5999999777641 122
Q ss_pred ee--------EeeCCCCCHHHHHHHHHHHHHhCCc
Q psy17416 79 VE--------IVPAAWTSERVITRTREIMTEIGMK 105 (290)
Q Consensus 79 vE--------iv~~~~t~~~~~~~~~~~~~~lgk~ 105 (290)
.+ +.++..++++.++.+.++++.+|..
T Consensus 140 ~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~ 174 (338)
T 1np3_A 140 FVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGG 174 (338)
T ss_dssp HHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHH
T ss_pred HhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 33 5666778889999999999999984
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=9e-05 Score=66.12 Aligned_cols=135 Identities=17% Similarity=0.085 Sum_probs=86.9
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||+.+|..+...|++|..||++++ +. + .....++++.
T Consensus 126 ~vgIIG---~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~--------------~~~~~~l~el 171 (303)
T 1qp8_A 126 KVAVLG---LGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------P--------------WRFTNSLEEA 171 (303)
T ss_dssp EEEEES---CSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------S--------------SCCBSCSHHH
T ss_pred EEEEEc---cCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------C--------------cccCCCHHHH
Confidence 445665 799999999999999999999998764 10 0 0123567788
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCC-CCCcEEEeccC---CC------CCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPV---NP------PYF 260 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~-~~~r~ig~Hf~---~p------~~~ 260 (290)
+++||+|+.++|...+.+.-+-++..+.++++++++..+++-.+. .+...+. ..-.-.|+.-| .| .+.
T Consensus 172 l~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~ 251 (303)
T 1qp8_A 172 LREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFS 251 (303)
T ss_dssp HTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHT
T ss_pred HhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhc
Confidence 999999999999775543333345667899999987433332222 3544443 22333455544 22 233
Q ss_pred CCeEEEecCCCC---CHHHHHHHH
Q psy17416 261 IPLVEIVPAAWT---SERVITRTR 281 (290)
Q Consensus 261 ~~lvEvv~~~~t---~~e~~~~~~ 281 (290)
.+.+-++|+... ..++.+++.
T Consensus 252 ~~nviltPH~~~~~~t~e~~~~~~ 275 (303)
T 1qp8_A 252 LPNVVATPWVAGGYGNERVWRQMV 275 (303)
T ss_dssp STTEEECCSCSSSSSCHHHHHHHH
T ss_pred CCCEEECCCcCCCCCCHHHHHHHH
Confidence 567889998654 466655443
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.49 E-value=4e-05 Score=68.60 Aligned_cols=82 Identities=7% Similarity=0.037 Sum_probs=62.1
Q ss_pred CcHHhhcccCcEEEEc--------------ccCChHHHHHHHHHHHhhcCCCc--EEeecCCCCChHHHhcccCC-----
Q psy17416 2 PVLRECLEDAIFIQES--------------VPEILQIKHQVYRAIDIFMSSNT--ILSSSTSSFLPSVLSEHSTH----- 60 (290)
Q Consensus 2 ~~l~~~~~~~d~viea--------------~~e~~~~K~~~~~~~~~~~~~~~--i~~snts~~~~~~l~~~~~~----- 60 (290)
+|. ++++|||+||++ +.+|..+++++.+++++.+ |++ |++|| |+..++..+.+
T Consensus 60 ~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN----Pv~~~t~~~~k~~~~p 133 (308)
T 2d4a_B 60 NSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN----PVDAMTYVMYKKTGFP 133 (308)
T ss_dssp SCG-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS----SHHHHHHHHHHHHCCC
T ss_pred CCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC----chHHHHHHHHHhcCCC
Confidence 566 689999999999 7889999999999999998 777 55666 77766655532
Q ss_pred CCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 61 ~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
|+|++|+ .|.-+.......+++.+|..|-
T Consensus 134 ~~rviG~------------------gt~LD~~R~~~~la~~lgv~~~ 162 (308)
T 2d4a_B 134 RERVIGF------------------SGILDSARMAYYISQKLGVSFK 162 (308)
T ss_dssp GGGEEEC------------------CHHHHHHHHHHHHHHHHTSCGG
T ss_pred hhhEEEe------------------cccchHHHHHHHHHHHhCcChh
Confidence 5677776 2444566666777788887553
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.49 E-value=3.1e-05 Score=71.26 Aligned_cols=119 Identities=16% Similarity=0.113 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcC
Q psy17416 89 ERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKG 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g 168 (290)
+-++..+..+.+++|. .+.+-+-|+++ +|.||+.+|..+...|++|..||++++.. . .
T Consensus 97 E~~l~~lL~l~r~~~~---~l~g~tvGIIG---lG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~-----------~- 154 (380)
T 2o4c_A 97 DYVLGCLLAMAEVRGA---DLAERTYGVVG---AGQVGGRLVEVLRGLGWKVLVCDPPRQAR----E-----------P- 154 (380)
T ss_dssp HHHHHHHHHHHHHHTC---CGGGCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECHHHHHH----S-----------T-
T ss_pred HHHHHHHHHHHhhhhc---ccCCCEEEEEe---CCHHHHHHHHHHHHCCCEEEEEcCChhhh----c-----------c-
Confidence 4456667778888875 23345567787 89999999999999999999999765321 0 0
Q ss_pred CCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchH----HHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhcc
Q psy17416 169 CLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ----IKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEH 242 (290)
Q Consensus 169 ~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~----~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~ 242 (290)
+ . ...++++.+++||+|+.++|-..+ .+.-+-+++.+.++++++++..+.+- .-..+...
T Consensus 155 ---g----------~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~a 220 (380)
T 2o4c_A 155 ---D----------G-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRL 220 (380)
T ss_dssp ---T----------S-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHH
T ss_pred ---C----------c-ccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHH
Confidence 1 0 125788889999999999997654 33322245666799999887333332 22345554
Q ss_pred C
Q psy17416 243 S 243 (290)
Q Consensus 243 ~ 243 (290)
+
T Consensus 221 L 221 (380)
T 2o4c_A 221 L 221 (380)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00033 Score=63.26 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=67.4
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||..+|..+...|++|..||++++.. + + .+ +.+..++++.
T Consensus 148 ~vgIiG---~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~-----------~~--------------~~~~~~l~el 196 (333)
T 1j4a_A 148 VVGVVG---TGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-E-----------KK--------------GYYVDSLDDL 196 (333)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-H-----------HT--------------TCBCSCHHHH
T ss_pred EEEEEc---cCHHHHHHHHHHHHCCCEEEEECCCcchh--H-H-----------hh--------------CeecCCHHHH
Confidence 445665 79999999999999999999999987542 1 1 00 1123467888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHS 243 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~ 243 (290)
+++||+|+.++|...+.+.-+-++..+.++++++++..+.+- .-..+...+
T Consensus 197 l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL 249 (333)
T 1j4a_A 197 YKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGL 249 (333)
T ss_dssp HHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred HhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHH
Confidence 899999999999766543322244556789999887433332 233555444
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00047 Score=61.21 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=60.0
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..|+ +|.+||++++.++.-...+.+... . .. ...++..++| .+++++||+|
T Consensus 8 aG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~----~-~~--------~~~~i~~t~d-~~a~~~aDiV 73 (294)
T 1oju_A 8 AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA----G-ID--------KYPKIVGGAD-YSLLKGSEII 73 (294)
T ss_dssp CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH----T-TT--------CCCEEEEESC-GGGGTTCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhh----h-cC--------CCCEEEEeCC-HHHhCCCCEE
Confidence 58999999999999998 999999999876522211222110 0 00 1134555667 5689999999
Q ss_pred EEccccc--------------hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPEI--------------LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe~--------------~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+..-+ ..+-+++.+++.+++ +++++.
T Consensus 74 Viaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~ii 115 (294)
T 1oju_A 74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKIL 115 (294)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEE
T ss_pred EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Confidence 9986432 234455666788875 455544
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00012 Score=65.45 Aligned_cols=132 Identities=20% Similarity=0.147 Sum_probs=83.4
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||+.+|..+...|++|..||++++... +. ..++++.
T Consensus 146 ~vgIIG---~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-------------------------------~~-~~~l~el 190 (311)
T 2cuk_A 146 TLGLVG---MGRIGQAVAKRALAFGMRVVYHARTPKPLP-------------------------------YP-FLSLEEL 190 (311)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCSSS-------------------------------SC-BCCHHHH
T ss_pred EEEEEE---ECHHHHHHHHHHHHCCCEEEEECCCCcccc-------------------------------cc-cCCHHHH
Confidence 345665 799999999999999999999998864210 11 3567788
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH--HHhccCCCCCcEEEeccC--------CCCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPV--------NPPYFIP 262 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~la~~~~~~~r~ig~Hf~--------~p~~~~~ 262 (290)
+++||+|+.++|...+.+.-+-++..+.++++++++..+++-.+. .+.+.+...-.-.++-.| +|.+..+
T Consensus 191 l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~~~L~~~~ 270 (311)
T 2cuk_A 191 LKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPGHPLYALP 270 (311)
T ss_dssp HHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTTSGGGGCT
T ss_pred HhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCCChhhhCC
Confidence 899999999999775433222234556789999887433333222 455555422222233332 2334467
Q ss_pred eEEEecCCCC-CHHHHHH
Q psy17416 263 LVEIVPAAWT-SERVITR 279 (290)
Q Consensus 263 lvEvv~~~~t-~~e~~~~ 279 (290)
.+-++|+... +.++..+
T Consensus 271 nviltPh~~~~t~~~~~~ 288 (311)
T 2cuk_A 271 NAVITPHIGSAGRTTRER 288 (311)
T ss_dssp TEEECCSCTTCBHHHHHH
T ss_pred CEEECCcCCCCCHHHHHH
Confidence 8889998644 3444333
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00025 Score=63.85 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=82.2
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|++|..||++++..+. . .......++++.
T Consensus 139 tvGIiG---lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~---------------------~------~~~~~~~~l~el 188 (324)
T 3evt_A 139 QLLIYG---TGQIGQSLAAKASALGMHVIGVNTTGHPADH---------------------F------HETVAFTATADA 188 (324)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEEESSCCCCTT---------------------C------SEEEEGGGCHHH
T ss_pred eEEEEC---cCHHHHHHHHHHHhCCCEEEEECCCcchhHh---------------------H------hhccccCCHHHH
Confidence 345665 7999999999999999999999998642110 0 001123577888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEeccC--------CCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHPV--------NPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf~--------~p~~~~ 261 (290)
+++||+|+.++|-..+.+.-+-++....++++++++..+.+ ..-..+...+.. .-...++=.| +|.+..
T Consensus 189 l~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~ 268 (324)
T 3evt_A 189 LATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQR 268 (324)
T ss_dssp HHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGC
T ss_pred HhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcC
Confidence 99999999999976665544446667789999998733322 233355554432 2222233222 233446
Q ss_pred CeEEEecCC
Q psy17416 262 PLVEIVPAA 270 (290)
Q Consensus 262 ~lvEvv~~~ 270 (290)
+.|-++|+-
T Consensus 269 ~nvilTPHi 277 (324)
T 3evt_A 269 DDVLITPHI 277 (324)
T ss_dssp SSEEECCSC
T ss_pred CCEEEcCcc
Confidence 778888874
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00066 Score=62.03 Aligned_cols=139 Identities=10% Similarity=0.029 Sum_probs=85.0
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-+-|+++ +|.||+.+|..+...|++|..||+++.. +.+.. .| +. ..++++
T Consensus 177 ktvGIIG---lG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-----------~g--------------~~-~~~l~e 226 (365)
T 4hy3_A 177 SEIGIVG---FGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEE-----------NG--------------VE-PASLED 226 (365)
T ss_dssp SEEEEEC---CSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHH-----------TT--------------CE-ECCHHH
T ss_pred CEEEEec---CCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhh-----------cC--------------ee-eCCHHH
Confidence 3456665 7999999999999999999999987522 21111 11 11 247888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCc--CHHHHhccCCC-CCcEEEecc--------CCCCCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--LPSVLSEHSTH-RSQFIVAHP--------VNPPYF 260 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~la~~~~~-~~r~ig~Hf--------~~p~~~ 260 (290)
.+++||+|+.++|-..+.+.-+-++..+.++++++++..+.+- .-..+...+.. .-. .++=- -+|.+.
T Consensus 227 ll~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~ 305 (365)
T 4hy3_A 227 VLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRS 305 (365)
T ss_dssp HHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGT
T ss_pred HHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhc
Confidence 9999999999999776655544466777899999987333222 22244444432 112 22221 123345
Q ss_pred CCeEEEecCC-CCCHHHHHHHH
Q psy17416 261 IPLVEIVPAA-WTSERVITRTR 281 (290)
Q Consensus 261 ~~lvEvv~~~-~t~~e~~~~~~ 281 (290)
.+.|-++|+- ....++.+++.
T Consensus 306 ~~nvilTPHia~~t~e~~~~~~ 327 (365)
T 4hy3_A 306 LKGFIRSAHRAGALDSAFKKMG 327 (365)
T ss_dssp CTTEEECCSCSSCCHHHHHHHH
T ss_pred CCCEEECCccccCHHHHHHHHH
Confidence 6778899874 33445544443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=61.86 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=68.2
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHh----------cccCCCCceeeeccCCC
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS----------EHSTHRSQFIVAHPVNP 72 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~----------~~~~~~~r~~g~hf~~P 72 (290)
+++++++++|+|+.|++.+ ...++++ +.... +++++.+.++.++++.+. +.+. ..++++. +|+
T Consensus 76 ~~~~~~~~~DvVi~av~~~--~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~--~n~ 148 (215)
T 2vns_A 76 FQEEAVSSPEVIFVAVFRE--HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKA--FNV 148 (215)
T ss_dssp EHHHHTTSCSEEEECSCGG--GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEE--CTT
T ss_pred cHHHHHhCCCEEEECCChH--HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEec--ccc
Confidence 5778899999999999964 3455665 66666 899999999999887653 3332 2355532 244
Q ss_pred CCCCCeeeEeeCCCC-------CHHHHHHHHHHHHHhCCccEEE
Q psy17416 73 PYFIPLVEIVPAAWT-------SERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 73 ~~~~~lvEiv~~~~t-------~~~~~~~~~~~~~~lgk~~v~v 109 (290)
....++.+-+....+ +++.++.+.+++..+|+.++.+
T Consensus 149 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~ 192 (215)
T 2vns_A 149 ISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDM 192 (215)
T ss_dssp BCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEEC
T ss_pred ccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEee
Confidence 332222221112223 8999999999999999988876
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00025 Score=66.34 Aligned_cols=132 Identities=16% Similarity=0.172 Sum_probs=82.7
Q ss_pred CCcHHhhcccCcEEEEcccCChH---------HHHHHHHHHHhhcCC---CcEEeecCCCCChHH----HhcccCC--CC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQ---------IKHQVYRAIDIFMSS---NTILSSSTSSFLPSV----LSEHSTH--RS 62 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~---------~K~~~~~~~~~~~~~---~~i~~snts~~~~~~----l~~~~~~--~~ 62 (290)
++|+++++++||+||.|||...+ ++ ++++++.+.+++ ++++. ++|+.++.. +...+.. ..
T Consensus 67 t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~-~v~~~i~~~l~~~~~~~iVV-~~Stv~~g~t~~~l~~~l~~~~g~ 144 (436)
T 1mv8_A 67 TTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIE-TVCREIGFAIREKSERHTVV-VRSTVLPGTVNNVVIPLIEDCSGK 144 (436)
T ss_dssp ESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHH-HHHHHHHHHHTTCCSCCEEE-ECSCCCTTHHHHTHHHHHHHHHSC
T ss_pred eCCHHHHhccCCEEEEEcCCCcccCCCcchHHHH-HHHHHHHHHhcccCCCcEEE-EeCCcCCCchHHHHHHHHHHhcCc
Confidence 36788899999999999998876 55 477899988888 88775 455666543 3333321 11
Q ss_pred ce-eeec-cCCCCCCCCee---------eEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccce-----eeEEecccc---
Q psy17416 63 QF-IVAH-PVNPPYFIPLV---------EIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR-----GFALNRIHG--- 123 (290)
Q Consensus 63 r~-~g~h-f~~P~~~~~lv---------Eiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~-----gf~~nri~G--- 123 (290)
++ +..+ +++|....+-. .++.|. ++++..+.+.+++..+|+ ++.+ .+.. .++.|....
T Consensus 145 ~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~-~v~~-~~~~~ae~~Kl~~N~~~a~~i 221 (436)
T 1mv8_A 145 KAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDA-PIIR-KTVEVAEMIKYTCNVWHAAKV 221 (436)
T ss_dssp CBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSS-CEEE-EEHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCC-CEEc-CCHHHHHHHHHHHHHHHHHHH
Confidence 21 1111 45777665543 355554 478899999999999998 6665 4422 233343322
Q ss_pred hhHHHHHHHHHHcC
Q psy17416 124 LIGQAWAMIFASAG 137 (290)
Q Consensus 124 ~~g~~ia~~~~~~G 137 (290)
.+..+++..+...|
T Consensus 222 a~~nE~~~l~~~~G 235 (436)
T 1mv8_A 222 TFANEIGNIAKAVG 235 (436)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 23344555555556
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00071 Score=59.70 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=73.2
Q ss_pred hcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh-HHHhcccCCCCcee-eeccCCCCCCCC-------
Q psy17416 7 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFI-VAHPVNPPYFIP------- 77 (290)
Q Consensus 7 ~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~-~~l~~~~~~~~r~~-g~hf~~P~~~~~------- 77 (290)
+++++|+||.|++.+ .-.++++++...+++++++.+.+++++. ..+++.++ +.+++ |.+++..+..+|
T Consensus 71 ~~~~~d~vi~~v~~~--~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~ 147 (316)
T 2ew2_A 71 QNEQVDLIIALTKAQ--QLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLG 147 (316)
T ss_dssp TSCCCSEEEECSCHH--HHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECS
T ss_pred cCCCCCEEEEEeccc--cHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEec
Confidence 345999999999975 3478899999999999999999888887 45777665 34777 655433222221
Q ss_pred --eeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 78 --LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 78 --lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
...+.....++++..+.+.+++..+|+.+... .|
T Consensus 148 ~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~-~d 183 (316)
T 2ew2_A 148 DGEIELENIDPSGKKFALEVVDVFQKAGLNPSYS-SN 183 (316)
T ss_dssp CCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEC-TT
T ss_pred CCcEEEeecCCCccHHHHHHHHHHHhCCCCcEEc-hh
Confidence 12344445567899999999999999865554 44
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00026 Score=63.74 Aligned_cols=128 Identities=20% Similarity=0.116 Sum_probs=81.5
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|++|..||+++.... . . .......++++.
T Consensus 142 tvGIIG---lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~--------------------~-~------~~~~~~~~l~el 191 (324)
T 3hg7_A 142 TLLILG---TGSIGQHIAHTGKHFGMKVLGVSRSGRERA--------------------G-F------DQVYQLPALNKM 191 (324)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCCCT--------------------T-C------SEEECGGGHHHH
T ss_pred eEEEEE---ECHHHHHHHHHHHhCCCEEEEEcCChHHhh--------------------h-h------hcccccCCHHHH
Confidence 456665 799999999999999999999999873110 0 0 111124678889
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCC-CCcEEEec-----c---CCCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAH-----P---VNPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~-~~r~ig~H-----f---~~p~~~~ 261 (290)
+++||+|+.++|-..+.+.-+-++....++++++++..+.+-. -..+...+.. .-...++= | -+|.+..
T Consensus 192 l~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~ 271 (324)
T 3hg7_A 192 LAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQ 271 (324)
T ss_dssp HHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTC
T ss_pred HhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcC
Confidence 9999999999996654443344556667899999873333322 2345444431 11212222 1 2344556
Q ss_pred CeEEEecCC
Q psy17416 262 PLVEIVPAA 270 (290)
Q Consensus 262 ~lvEvv~~~ 270 (290)
+.|-++|+-
T Consensus 272 ~nvilTPHi 280 (324)
T 3hg7_A 272 PNLIITPHN 280 (324)
T ss_dssp TTEEECCSC
T ss_pred CCEEEeCCC
Confidence 788899974
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=58.28 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=67.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..++..+. .|++|.+++++++.++...+ .|..... ........+.. + .+...++|+||.
T Consensus 10 aGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~-----------~G~~~~~-~~~~~~~~~~~--~-~~~~~~~D~vil 73 (307)
T 3ego_A 10 GGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS-----------EGIRLYK-GGEEFRADCSA--D-TSINSDFDLLVV 73 (307)
T ss_dssp CSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH-----------HCEEEEE-TTEEEEECCEE--E-SSCCSCCSEEEE
T ss_pred CCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh-----------CCceEec-CCCeecccccc--c-ccccCCCCEEEE
Confidence 7999999999999 99999999999987665443 2221100 00000111111 1 234678999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH-HHhccCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHST 244 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~la~~~~ 244 (290)
|++... -.++++++.+. ++++ |+|-..++... .+.+.++
T Consensus 74 avK~~~--~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~ 113 (307)
T 3ego_A 74 TVKQHQ--LQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHV 113 (307)
T ss_dssp CCCGGG--HHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCC
T ss_pred EeCHHH--HHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCC
Confidence 999655 56778888765 6777 77888888876 4444433
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00011 Score=65.85 Aligned_cols=101 Identities=8% Similarity=0.055 Sum_probs=65.2
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHH-HHHhhcCCCcEEe-ecCCCCChH-HHhcccCCCCceeeeccCCCCCC---
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILS-SSTSSFLPS-VLSEHSTHRSQFIVAHPVNPPYF--- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~-~~~~~~~~~~i~~-snts~~~~~-~l~~~~~~~~r~~g~hf~~P~~~--- 75 (290)
+|+++++++||+||.|+|++..++.-++. .+-+.+.+++++. ++|+..... ++++.+.. + |+||+..|-.
T Consensus 79 ~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~--~--g~~~~~~pv~g~~ 154 (320)
T 4dll_A 79 EQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGA--L--GIAHLDTPVSGGT 154 (320)
T ss_dssp SSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH--T--TCEEEECCEECHH
T ss_pred CCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHH--c--CCEEEeCCCcCCH
Confidence 68899999999999999998888766652 3444455665554 443333222 45444421 1 5555543211
Q ss_pred -----CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 76 -----IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 76 -----~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
-.+..++.| ++++++.+..+++.+ +.++.+.
T Consensus 155 ~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~-~~~~~~g 190 (320)
T 4dll_A 155 VGAEQGTLVIMAGG---KPADFERSLPLLKVF-GRATHVG 190 (320)
T ss_dssp HHHHHTCEEEEEES---CHHHHHHHHHHHHHH-EEEEEEE
T ss_pred hHHhcCCeeEEeCC---CHHHHHHHHHHHHhc-CCEEEeC
Confidence 134445544 688999999999999 8888773
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00019 Score=64.89 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=69.0
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
..-|+++ +|.||+.+|..+...|++|..||+++... + + . ... ..++++
T Consensus 146 ~~vgIiG---~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~----------------~---------~~~-~~~l~e 193 (333)
T 1dxy_A 146 QTVGVMG---TGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-H----------------P---------DFD-YVSLED 193 (333)
T ss_dssp SEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-C----------------T---------TCE-ECCHHH
T ss_pred CEEEEEC---cCHHHHHHHHHHHHCCCEEEEECCCcchh--h-H----------------h---------ccc-cCCHHH
Confidence 3456665 79999999999999999999999876321 0 0 0 011 237888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHST 244 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~ 244 (290)
.+++||+|+.++|-..+.+.-+-++..+.++++++++..+++ ..-..+...+.
T Consensus 194 ll~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 248 (333)
T 1dxy_A 194 LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248 (333)
T ss_dssp HHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 899999999999987655443334566678999988733333 23335555554
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00043 Score=58.55 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=71.6
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCC--------------ChHHHhcccCCCCceeeec
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF--------------LPSVLSEHSTHRSQFIVAH 68 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~--------------~~~~l~~~~~~~~r~~g~h 68 (290)
+..++++++|+|+.|+| .....++++++.. . ++.++.+.+..+ +...+++.+. ..+++...
T Consensus 74 ~~~~~~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~ 148 (220)
T 4huj_A 74 VELKDALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAF 148 (220)
T ss_dssp CCHHHHTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEES
T ss_pred ChHHHHhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECC
Confidence 34556899999999997 6677888888866 4 577888888777 4667787776 35666554
Q ss_pred cCCCCCCCC---------eeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 69 PVNPPYFIP---------LVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 69 f~~P~~~~~---------lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.+.|+.... ..-++.+ .+++..+.+.+++..+|+.++.+
T Consensus 149 ~~~~~~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~ 196 (220)
T 4huj_A 149 NTLPAAVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDL 196 (220)
T ss_dssp CSSCHHHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCHHHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEee
Confidence 444443222 2233333 56999999999999999988875
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00036 Score=62.59 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=80.6
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|++|..||++++..+ + . .......++++.
T Consensus 141 tvGIiG---~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~--------------------~-~------~~~~~~~~l~el 190 (315)
T 3pp8_A 141 SVGIMG---AGVLGAKVAESLQAWGFPLRCWSRSRKSWP--------------------G-V------ESYVGREELRAF 190 (315)
T ss_dssp CEEEEC---CSHHHHHHHHHHHTTTCCEEEEESSCCCCT--------------------T-C------EEEESHHHHHHH
T ss_pred EEEEEe---eCHHHHHHHHHHHHCCCEEEEEcCCchhhh--------------------h-h------hhhcccCCHHHH
Confidence 345565 799999999999999999999999874211 0 0 001112578888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCCC-CCcEEEecc--------CCCCCCC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHSTH-RSQFIVAHP--------VNPPYFI 261 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~~-~~r~ig~Hf--------~~p~~~~ 261 (290)
+++||+|+.++|-..+.+.-+-++..+.++++++++..+.+ +.-..+.+.+.. .-.-.++=. -+|.+..
T Consensus 191 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~ 270 (315)
T 3pp8_A 191 LNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRH 270 (315)
T ss_dssp HHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGC
T ss_pred HhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcC
Confidence 99999999999977655443436677789999998733322 223345444421 111112211 1233445
Q ss_pred CeEEEecCC
Q psy17416 262 PLVEIVPAA 270 (290)
Q Consensus 262 ~lvEvv~~~ 270 (290)
+.|-++|+-
T Consensus 271 ~nvilTPHi 279 (315)
T 3pp8_A 271 PRVAMTPHI 279 (315)
T ss_dssp TTEEECSSC
T ss_pred CCEEECCCC
Confidence 678888874
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0012 Score=59.13 Aligned_cols=105 Identities=11% Similarity=0.031 Sum_probs=70.9
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccC-CCCceeeeccCCCCC--CCC
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY--FIP 77 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~-~~~r~~g~hf~~P~~--~~~ 77 (290)
++++++++||+||.|||.+...+ .++++...+++++++.+.++.-|.+ ++++.+. +.-+++....+.|.+ ...
T Consensus 80 s~~e~~~~aDvVi~avp~~~~~~--~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~ 157 (317)
T 4ezb_A 80 DDVAGIACADVVLSLVVGAATKA--VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEK 157 (317)
T ss_dssp SSGGGGGGCSEEEECCCGGGHHH--HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGG
T ss_pred CHHHHHhcCCEEEEecCCHHHHH--HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCC
Confidence 78889999999999999998876 3588888888998887665443333 4554442 223344433333433 335
Q ss_pred eeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 78 LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 78 lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
+..++.|+.+ +.+..+++.+|+.++.+ .+.+|
T Consensus 158 l~i~vgg~~~-----~~~~~ll~~~g~~v~~~-g~~~g 189 (317)
T 4ezb_A 158 VPILVAGRRA-----VEVAERLNALGMNLEAV-GETPG 189 (317)
T ss_dssp SEEEEESTTH-----HHHHHHHHTTTCEEEEE-ESSTT
T ss_pred EEEEEeCChH-----HHHHHHHHHhCCCeEEe-CCCcC
Confidence 6666666543 77888999999988877 45344
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00044 Score=61.54 Aligned_cols=115 Identities=10% Similarity=0.074 Sum_probs=69.0
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHH--HHHhhcCCCcEEeecCCCCChH-HHhcccC-CCCceeeeccCCCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSSTSSFLPS-VLSEHST-HRSQFIVAHPVNPPYFI 76 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~--~~~~~~~~~~i~~snts~~~~~-~l~~~~~-~~~r~~g~hf~~P~~~~ 76 (290)
++++++++++||+||.|+|.+..++.-+ . .+....+...++-++|+..... ++++... +.-+|+....+.+++..
T Consensus 56 ~~~~~e~~~~aDvVi~~vp~~~~~~~v~-~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~ 134 (306)
T 3l6d_A 56 CESVKAALSASPATIFVLLDNHATHEVL-GMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNV 134 (306)
T ss_dssp CSSHHHHHHHSSEEEECCSSHHHHHHHH-TSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGT
T ss_pred cCCHHHHHhcCCEEEEEeCCHHHHHHHh-cccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccc
Confidence 3688999999999999999988777544 4 5666544444444444333332 4544442 22334443322222111
Q ss_pred ---CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE--ec-cceeeEEe
Q psy17416 77 ---PLVEIVPAAWTSERVITRTREIMTEIGMKPVTL--TT-EIRGFALN 119 (290)
Q Consensus 77 ---~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v--~~-d~~gf~~n 119 (290)
.+.-++.| ++++++.+..+++.+|+.++.+ .. ...|...+
T Consensus 135 ~~~~~~i~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k 180 (306)
T 3l6d_A 135 GHRESHSIHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLH 180 (306)
T ss_dssp TCTTCEEEEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH
T ss_pred cCCceEEEEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHH
Confidence 23333333 6899999999999998877776 32 24455655
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00017 Score=63.45 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=70.7
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHH---hhcCCCcEEeecCCCCChHHHhcccCC-CCceeeeccCCCCCC--
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAID---IFMSSNTILSSSTSSFLPSVLSEHSTH-RSQFIVAHPVNPPYF-- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~---~~~~~~~i~~snts~~~~~~l~~~~~~-~~r~~g~hf~~P~~~-- 75 (290)
+|++++++++|+|+.|+|.+..++. ++.++. +.+++++++.+ +|++++..+...... +++ |.+|++.|-.
T Consensus 48 ~~~~~~~~~~Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~--g~~~~~~p~~~g 123 (296)
T 2gf2_A 48 SSPADVAEKADRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM--GAVFMDAPVSGG 123 (296)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT--TCEEEECCEESH
T ss_pred CCHHHHHhcCCEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc--CCEEEEcCCCCC
Confidence 5788889999999999998888765 444433 35678999998 899998755432211 122 5566554311
Q ss_pred -----CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 76 -----IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 76 -----~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.....++.+ .+++.++.+.+++..+|+.++.+
T Consensus 124 ~~~a~~~~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~ 160 (296)
T 2gf2_A 124 VGAARSGNLTFMVG--GVEDEFAAAQELLGCMGSNVVYC 160 (296)
T ss_dssp HHHHHHTCEEEEEE--SCGGGHHHHHHHHTTTEEEEEEE
T ss_pred hhHHhcCcEEEEeC--CCHHHHHHHHHHHHHHcCCeEEe
Confidence 122445555 46888999999999999987766
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00098 Score=57.01 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=74.5
Q ss_pred hcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 7 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 7 ~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
++++|| +=|+|.+ .+ .++++++....++++++...+++.+..-+.....++.+|+|.|+... ...++.+.
T Consensus 40 ~~~~aD--ilavP~~-ai-~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g-----~~~~i~a~- 109 (232)
T 3dfu_A 40 DIRDFE--LVVIDAH-GV-EGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQ-----DRWVASAL- 109 (232)
T ss_dssp GGGGCS--EEEECSS-CH-HHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEET-----TEEEEEES-
T ss_pred HhccCC--EEEEcHH-HH-HHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCC-----CceeeeCC-
Confidence 478899 6699988 44 67889999889999999988888887777766667789999996642 33454443
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
+++.++.+..+++.+|++++.+.
T Consensus 110 -d~~a~~~l~~L~~~lG~~vv~~~ 132 (232)
T 3dfu_A 110 -DELGETIVGLLVGELGGSIVEIA 132 (232)
T ss_dssp -SHHHHHHHHHHHHHTTCEECCCC
T ss_pred -CHHHHHHHHHHHHHhCCEEEEeC
Confidence 78899999999999999999884
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0027 Score=59.66 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=68.1
Q ss_pred HHHHHHHHHH--c---CceeEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 126 GQAWAMIFAS--A---GYKVSLYDVLS--EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 126 g~~ia~~~~~--~---G~~V~l~d~~~--e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
+..++..++. . +.+|.+||+++ +.++......+..+. ..+ ...+++.++|+.+++++||+
T Consensus 20 ~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~---~~~----------~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 20 TPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVE---KAG----------VPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp HHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH---HTT----------CCCEEEEESCHHHHHTTCSE
T ss_pred HHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHh---hcC----------CCcEEEEeCCHHHHhCCCCE
Confidence 6665555665 2 56899999999 887664432222211 110 11356667898788999999
Q ss_pred EEEccccch----------------------------------HHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhcc
Q psy17416 199 IQESVPEIL----------------------------------QIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEH 242 (290)
Q Consensus 199 Vieavpe~~----------------------------------~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~ 242 (290)
||.+++... .+-+++.+++.++++. +++. ||--.+ +++....
T Consensus 87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~-a~ii~~tNPvdi-vT~a~~k 164 (450)
T 1s6y_A 87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPD-AWLINFTNPAGM-VTEAVLR 164 (450)
T ss_dssp EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEECSSSHHH-HHHHHHH
T ss_pred EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCC-eEEEEeCCcHHH-HHHHHHH
Confidence 999998422 3456777888888754 5554 332222 3333333
Q ss_pred CCCCCcEEEec
Q psy17416 243 STHRSQFIVAH 253 (290)
Q Consensus 243 ~~~~~r~ig~H 253 (290)
...+.|++|+-
T Consensus 165 ~~p~~rViG~c 175 (450)
T 1s6y_A 165 YTKQEKVVGLC 175 (450)
T ss_dssp HCCCCCEEECC
T ss_pred hCCCCCEEEeC
Confidence 33234788874
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00024 Score=64.42 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=62.5
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|+++ +|.||+.+|..+...|++|..||+++.. ..+ . ...+ .++++.
T Consensus 150 tvgIiG---lG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~~----------------~---------~~~~-~~l~el 197 (343)
T 2yq5_A 150 TVGLIG---VGHIGSAVAEIFSAMGAKVIAYDVAYNP---EFE----------------P---------FLTY-TDFDTV 197 (343)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCG---GGT----------------T---------TCEE-CCHHHH
T ss_pred eEEEEe---cCHHHHHHHHHHhhCCCEEEEECCChhh---hhh----------------c---------cccc-cCHHHH
Confidence 345555 7999999999999999999999998742 000 0 0122 378889
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+++||+|+.++|-..+.+.-+-++..+.++++++++.
T Consensus 198 l~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN 234 (343)
T 2yq5_A 198 LKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLIN 234 (343)
T ss_dssp HHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEE
T ss_pred HhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEE
Confidence 9999999999996655444344566677899999973
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0026 Score=57.60 Aligned_cols=87 Identities=25% Similarity=0.302 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|.+|..+|..++..|. +|.++|.+++.++.-...+.+. .. . ..++.+++++.+++++||+||
T Consensus 18 G~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~-------~~-----~----~~~i~~t~d~~~al~dADvVv 81 (343)
T 3fi9_A 18 GMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-------GF-----E----GLNLTFTSDIKEALTDAKYIV 81 (343)
T ss_dssp SHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH-------CC-----T----TCCCEEESCHHHHHTTEEEEE
T ss_pred ChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC-------cC-----C----CCceEEcCCHHHHhCCCCEEE
Confidence 7899999988888885 8999999987654322222221 00 0 135666788888899999999
Q ss_pred Ecc--------------ccchHHHHHHHHHHhhhCCCCc
Q psy17416 201 ESV--------------PEILQIKHQVYRAIDIFMSSNT 225 (290)
Q Consensus 201 eav--------------pe~~~~k~~~~~~l~~~~~~~~ 225 (290)
.+. ..|..+.+++.+++.++++...
T Consensus 82 itaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~ 120 (343)
T 3fi9_A 82 SSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK 120 (343)
T ss_dssp ECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 884 3455677788888999987664
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00027 Score=63.35 Aligned_cols=80 Identities=10% Similarity=-0.007 Sum_probs=59.7
Q ss_pred HHhhcccCcEEEEc--------------ccCChHHHHHHHHHHHhhcCCCc--EEeecCCCCChHHHhcccCC-----CC
Q psy17416 4 LRECLEDAIFIQES--------------VPEILQIKHQVYRAIDIFMSSNT--ILSSSTSSFLPSVLSEHSTH-----RS 62 (290)
Q Consensus 4 l~~~~~~~d~viea--------------~~e~~~~K~~~~~~~~~~~~~~~--i~~snts~~~~~~l~~~~~~-----~~ 62 (290)
..+++++||+||.+ +.++..+|+++.+++++.+ |++ +++|| |+..++..+.+ |+
T Consensus 68 ~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tN----Pv~~~~~~~~~~s~~p~~ 142 (316)
T 1ldn_A 68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATN----PVDILTYATWKFSGLPHE 142 (316)
T ss_dssp CGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSS----SHHHHHHHHHHHHTCCGG
T ss_pred cHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCC----chHHHHHHHHHHhCCCHH
Confidence 45789999999999 6778899999999999998 666 44455 77766655532 45
Q ss_pred ceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 63 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 63 r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
|++|+ .|.-+.......+++.+|..|
T Consensus 143 rviG~------------------gt~lD~~r~~~~la~~l~v~~ 168 (316)
T 1ldn_A 143 RVIGS------------------GTILDTARFRFLLGEYFSVAP 168 (316)
T ss_dssp GEEEC------------------TTHHHHHHHHHHHHHHHTSCG
T ss_pred HEEec------------------ccchHHHHHHHHHHHHhCCCH
Confidence 66665 355566677777788888754
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0018 Score=57.79 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=61.7
Q ss_pred eeeEEecccchhHHHHHHHHHHc-Cc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASA-GY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~-G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.||+.++..+... |+ +|.+||++++..++..+. .+. ++...+++++
T Consensus 138 igiIG---~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~----------~~~------------~~~~~~~~~e 192 (312)
T 2i99_A 138 LCILG---AGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT----------VQG------------EVRVCSSVQE 192 (312)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHH----------SSS------------CCEECSSHHH
T ss_pred EEEEC---CcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------hhC------------CeEEeCCHHH
Confidence 46676 799999999988775 76 899999999877654431 010 2334678888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+++++|+|+.|+|.. ..++.. +.++++++|..
T Consensus 193 ~v~~aDiVi~atp~~----~~v~~~--~~l~~g~~vi~ 224 (312)
T 2i99_A 193 AVAGADVIITVTLAT----EPILFG--EWVKPGAHINA 224 (312)
T ss_dssp HHTTCSEEEECCCCS----SCCBCG--GGSCTTCEEEE
T ss_pred HHhcCCEEEEEeCCC----CcccCH--HHcCCCcEEEe
Confidence 899999999999953 233322 56788988875
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00035 Score=62.97 Aligned_cols=85 Identities=11% Similarity=-0.039 Sum_probs=62.1
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh---HHHhcccC-CCCceeeeccCCCCC----
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP---SVLSEHST-HRSQFIVAHPVNPPY---- 74 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~---~~l~~~~~-~~~r~~g~hf~~P~~---- 74 (290)
++++.++++|+|+.++|.+.+.+.-+.+++-+.+++++++. |+|+-++ ..|.+.+. ..-+..|+++|+|.+
T Consensus 203 ~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailI-n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~ 281 (330)
T 2gcg_A 203 STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFI-NISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTN 281 (330)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTT
T ss_pred CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCC
Confidence 68888999999999999988776655556667789999885 6766544 57777664 233447899999875
Q ss_pred --CCCeeeEeeCCCCC
Q psy17416 75 --FIPLVEIVPAAWTS 88 (290)
Q Consensus 75 --~~~lvEiv~~~~t~ 88 (290)
+..+.+|+.+|+++
T Consensus 282 ~~l~~~~nvi~tPh~~ 297 (330)
T 2gcg_A 282 HPLLTLKNCVILPHIG 297 (330)
T ss_dssp CGGGGCTTEEECCSCT
T ss_pred ChhhcCCCEEECCCCC
Confidence 34455777766664
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0055 Score=47.45 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=59.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC--CCCCChhhhhcccccCCchHh-hcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL--KGSLSPEEQFGLISGTPVLRE-CLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~--~~~~~~~~~~~~i~~~~~l~~-~l~~aDl 198 (290)
+|.+|..++..+...|++|.++|++++.++.+.+ .|.. .+.... ...+.+ .+.++|+
T Consensus 14 ~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-----------~~~~~~~gd~~~---------~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 14 SEAAGVGLVRELTAAGKKVLAVDKSKEKIELLED-----------EGFDAVIADPTD---------ESFYRSLDLEGVSA 73 (141)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----------TTCEEEECCTTC---------HHHHHHSCCTTCSE
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CCCcEEECCCCC---------HHHHHhCCcccCCE
Confidence 5889999999999999999999999988766544 1210 111100 011222 1468999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHH
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l 239 (290)
||.+++. .+....+...+.+.- ...+++...+......+
T Consensus 74 vi~~~~~-~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l 112 (141)
T 3llv_A 74 VLITGSD-DEFNLKILKALRSVS-DVYAIVRVSSPKKKEEF 112 (141)
T ss_dssp EEECCSC-HHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred EEEecCC-HHHHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence 9999994 333334444444444 55677655555444444
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00057 Score=62.08 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=63.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh---HHHhcccCCCCce--eeeccCCCCC--
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP---SVLSEHSTHRSQF--IVAHPVNPPY-- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~---~~l~~~~~~~~r~--~g~hf~~P~~-- 74 (290)
+++++.+++||+|+.++|.+.+.|.-+.+++-+.++++++|. |+|+-++ ..|.+.++. .++ .|+++|.|.|
T Consensus 212 ~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gaili-n~srg~~vd~~aL~~aL~~-~~i~gaglDv~~~EP~~ 289 (348)
T 2w2k_A 212 DSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIV-NTARGPVISQDALIAALKS-GKLLSAGLDVHEFEPQV 289 (348)
T ss_dssp SSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHT-TSEEEEEESSCTTTTSC
T ss_pred CCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEE-ECCCCchhCHHHHHHHHHh-CCceEEEeccCCCCCCC
Confidence 478888999999999999998888766666667889999885 7776554 467777754 244 6899999543
Q ss_pred ---CCCeeeEeeCCCCC
Q psy17416 75 ---FIPLVEIVPAAWTS 88 (290)
Q Consensus 75 ---~~~lvEiv~~~~t~ 88 (290)
+..+..++.+|+++
T Consensus 290 ~~~L~~~~nviltPH~~ 306 (348)
T 2w2k_A 290 SKELIEMKHVTLTTHIG 306 (348)
T ss_dssp CHHHHTSSSEEECCSCT
T ss_pred CchhhcCCCEEEcCcCC
Confidence 44566788777774
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0042 Score=55.96 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..|+ ++.++|++++.++.-...+.+.. .......+..++|++ ++++||+|
T Consensus 27 aG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~--------------~~~~~~~i~~~~d~~-~~~~aDiV 91 (331)
T 4aj2_A 27 VGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS--------------LFLKTPKIVSSKDYS-VTANSKLV 91 (331)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG--------------GGCSCCEEEECSSGG-GGTTEEEE
T ss_pred CCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh--------------hccCCCeEEEcCCHH-HhCCCCEE
Confidence 58999999999998887 89999999865543222222210 000112344467777 59999999
Q ss_pred EEccc--------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVP--------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.- .|..+.+++.+.+.++++. +++.
T Consensus 92 vi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~-a~vl 133 (331)
T 4aj2_A 92 IITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQ-CKLL 133 (331)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEE
T ss_pred EEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCC-eEEE
Confidence 97742 2334566777788888554 4444
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00014 Score=65.66 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=61.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccCC-CCceeeeccCCCCC---
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVNPPY--- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~-~~r~~g~hf~~P~~--- 74 (290)
+++++.+++||+|+.++|.+.+.+.-+.+++-+.++++++| .|+|+-++. .|.+.+.. +-...|+++|.|.|
T Consensus 196 ~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ail-In~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~ 274 (334)
T 2dbq_A 196 KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL-INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYN 274 (334)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEE-EECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCC
T ss_pred CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEE-EECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCC
Confidence 47888999999999999999987765556666778999988 566666554 47776643 22336799999543
Q ss_pred --CCCeeeEeeCCCCC
Q psy17416 75 --FIPLVEIVPAAWTS 88 (290)
Q Consensus 75 --~~~lvEiv~~~~t~ 88 (290)
++.+..|+.+|+++
T Consensus 275 ~~L~~~~~vi~tPh~~ 290 (334)
T 2dbq_A 275 EELFKLDNVVLTPHIG 290 (334)
T ss_dssp HHHHHCTTEEECSSCT
T ss_pred chhhcCCCEEECCccC
Confidence 33455677766664
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00053 Score=51.66 Aligned_cols=48 Identities=6% Similarity=-0.043 Sum_probs=28.6
Q ss_pred HhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 101 EIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 101 ~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.++|.||++++|+|||++||++..+.++.+.++.+.. .+++++|.++.
T Consensus 3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGv-------a~~~dID~a~~ 50 (110)
T 3ctv_A 3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGV-------ATPQDIDTAIK 50 (110)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHTTS-------SCHHHHHHHHH
T ss_pred CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Confidence 4789999334899999999999999999877776542 48999998876
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00019 Score=63.44 Aligned_cols=94 Identities=12% Similarity=-0.010 Sum_probs=67.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc-ccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l-~~aDlVi 200 (290)
+|.||..++..+.+.|++|.+|+++++.++.. ...| .. ...+ +.+..+.+ .++|+||
T Consensus 10 aGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g----~~-----~~~~--~~~~~~~~~~~~D~vi 67 (294)
T 3g17_A 10 PGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPH----AP-----AQDI--VVKGYEDVTNTFDVII 67 (294)
T ss_dssp CSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTT----SC-----CEEE--EEEEGGGCCSCEEEEE
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCC----ee-----ccce--ecCchHhcCCCCCEEE
Confidence 79999999999999999999999986432100 0011 00 0112 22334444 7899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 239 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l 239 (290)
.|++... -.++++++.+.++++++|++-..++...+.
T Consensus 68 lavk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~ 104 (294)
T 3g17_A 68 IAVKTHQ--LDAVIPHLTYLAHEDTLIILAQNGYGQLEH 104 (294)
T ss_dssp ECSCGGG--HHHHGGGHHHHEEEEEEEEECCSSCCCGGG
T ss_pred EeCCccC--HHHHHHHHHHhhCCCCEEEEeccCcccHhh
Confidence 9999765 668889999999999998888888877655
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00084 Score=60.60 Aligned_cols=86 Identities=10% Similarity=-0.012 Sum_probs=61.9
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccC-CCCceeeeccCCCCC---
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPY--- 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~-~~~r~~g~hf~~P~~--- 74 (290)
+++++.+++||+|+.++|.+.+.+.-+-+++-+.++++++| .|+|+-.+. .|.+.+. ..-+..|++||.+.|
T Consensus 207 ~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gail-In~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~ 285 (333)
T 3ba1_A 207 GSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVL-INIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP 285 (333)
T ss_dssp SCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEE-EECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC
T ss_pred CCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEE-EECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc
Confidence 57899999999999999998877654444455567899988 566665553 7777774 345678999998443
Q ss_pred --CCCeeeEeeCCCCC
Q psy17416 75 --FIPLVEIVPAAWTS 88 (290)
Q Consensus 75 --~~~lvEiv~~~~t~ 88 (290)
+..+-.++.+|.++
T Consensus 286 ~~L~~~~nviltPH~~ 301 (333)
T 3ba1_A 286 EKLFGLENVVLLPHVG 301 (333)
T ss_dssp GGGGGCTTEEECSSCT
T ss_pred chhhcCCCEEECCcCC
Confidence 44555677777664
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0031 Score=52.78 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=67.3
Q ss_pred hcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC---------------hHHHhcccCCCCceee-eccC
Q psy17416 7 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL---------------PSVLSEHSTHRSQFIV-AHPV 70 (290)
Q Consensus 7 ~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~---------------~~~l~~~~~~~~r~~g-~hf~ 70 (290)
++++||+|+.|++ . ..-.++++++...++ ++++.+.++.++ ...+++.++ ..++++ +|+.
T Consensus 54 ~~~~aD~vi~av~-~-~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~ 129 (209)
T 2raf_A 54 ATTLGEIVIMAVP-Y-PALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTT 129 (209)
T ss_dssp CSSCCSEEEECSC-H-HHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTS
T ss_pred HhccCCEEEEcCC-c-HHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecc
Confidence 5689999999999 4 444588999988888 999988888776 345666654 367777 6654
Q ss_pred CCCCC--------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 71 NPPYF--------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 71 ~P~~~--------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
.-|.. .+..-++.+ ++++..+.+.+++..+|..++.+
T Consensus 130 ~~p~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~ 174 (209)
T 2raf_A 130 FAATLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDA 174 (209)
T ss_dssp CHHHHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEE
T ss_pred cHhhccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeC
Confidence 31111 111112222 46789999999999999877776
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=63.02 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=66.2
Q ss_pred CCcHHhhccc---CcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh--HHHhcccCC-CCceeeeccCCCCC
Q psy17416 1 TPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHSTH-RSQFIVAHPVNPPY 74 (290)
Q Consensus 1 ~~~l~~~~~~---~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~--~~l~~~~~~-~~r~~g~hf~~P~~ 74 (290)
++|+++++++ +|+||.+||....++. ++.++...+++++++.+.+++.+. .++++.+.. .-+++++..+..+.
T Consensus 62 ~~s~~e~v~~l~~aDvVil~Vp~~~~v~~-vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~ 140 (497)
T 2p4q_A 62 ATSIEDFISKLKRPRKVMLLVKAGAPVDA-LINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEE 140 (497)
T ss_dssp CSSHHHHHHTSCSSCEEEECCCSSHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHH
T ss_pred eCCHHHHHhcCCCCCEEEEEcCChHHHHH-HHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChh
Confidence 3578887776 9999999999877764 558898899988888766555443 356655432 12333332222111
Q ss_pred --CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCc
Q psy17416 75 --FIPLVEIVPAAWTSERVITRTREIMTEIGMK 105 (290)
Q Consensus 75 --~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~ 105 (290)
.... -++.|. +++.++.+..++..+|+.
T Consensus 141 ~a~~G~-~im~gg--~~e~~~~v~~ll~~~g~~ 170 (497)
T 2p4q_A 141 GARYGP-SLMPGG--SEEAWPHIKNIFQSISAK 170 (497)
T ss_dssp HHHHCC-EEEEEE--CGGGHHHHHHHHHHHSCE
T ss_pred HhhcCC-eEEecC--CHHHHHHHHHHHHHhcCc
Confidence 0001 155553 688999999999999986
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0038 Score=58.94 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCcHHhhccc---CcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh--HHHhcccCC-CCceeeeccCCCCC
Q psy17416 1 TPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHSTH-RSQFIVAHPVNPPY 74 (290)
Q Consensus 1 ~~~l~~~~~~---~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~--~~l~~~~~~-~~r~~g~hf~~P~~ 74 (290)
++|+++.+++ +|+|+.|+|....++. ++.++...+++++++.+.+++.+. .++.+.+.. .-+++++....++.
T Consensus 56 ~~s~~e~v~~l~~aDvVilavp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~ 134 (474)
T 2iz1_A 56 TKTLEEFVGSLEKPRRIMLMVQAGAATDA-TIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEK 134 (474)
T ss_dssp CSSHHHHHHTBCSSCEEEECCCTTHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHH
T ss_pred eCCHHHHHhhccCCCEEEEEccCchHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChh
Confidence 3578887766 9999999999877764 668888889888888766555533 467666542 22344432221110
Q ss_pred ---CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCc
Q psy17416 75 ---FIPLVEIVPAAWTSERVITRTREIMTEIGMK 105 (290)
Q Consensus 75 ---~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~ 105 (290)
.-+ -++.+. +++.++.+..++..+|..
T Consensus 135 ~a~~g~--~i~~gg--~~~~~~~v~~ll~~~g~~ 164 (474)
T 2iz1_A 135 GALLGP--SMMPGG--QKEAYDLVAPIFEQIAAK 164 (474)
T ss_dssp HHHHCC--CEEEEE--CHHHHHHHHHHHHHHSCB
T ss_pred hhccCC--eEEecC--CHHHHHHHHHHHHHHhcc
Confidence 001 134443 789999999999999986
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=57.71 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=65.9
Q ss_pred HHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEe--ecCCCCChHHHhcccCCC-CceeeeccCCCCC---CCC
Q psy17416 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHR-SQFIVAHPVNPPY---FIP 77 (290)
Q Consensus 4 l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~--snts~~~~~~l~~~~~~~-~r~~g~hf~~P~~---~~~ 77 (290)
++++++++|+|+.|++.+..++. +++++.+.+++++++. ||.+.....++++.+... -+++....+.++. .-.
T Consensus 49 ~~~~~~~~D~vi~~v~~~~~~~~-v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~ 127 (289)
T 2cvz_A 49 PLERVAEARVIFTCLPTTREVYE-VAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGT 127 (289)
T ss_dssp CGGGGGGCSEEEECCSSHHHHHH-HHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTC
T ss_pred HHHHHhCCCEEEEeCCChHHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCC
Confidence 56778899999999998877765 6788888888998887 444333345677666432 2233321111110 001
Q ss_pred eeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 78 LVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 78 lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
+. ++.+ ++++.++.+.+++ .+|+.++.+.
T Consensus 128 ~~-~~~~--~~~~~~~~~~~ll-~~g~~~~~~~ 156 (289)
T 2cvz_A 128 LT-VMLG--GPEEAVERVRPFL-AYAKKVVHVG 156 (289)
T ss_dssp EE-EEEE--SCHHHHHHHGGGC-TTEEEEEEEE
T ss_pred eE-EEEC--CCHHHHHHHHHHH-hhcCCeEEcC
Confidence 22 2333 3788999999999 9998777773
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.011 Score=53.11 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~~l~~aDl 198 (290)
+|.+|..++..++..|+ ++.++|++++.++.....+.+... ... .++.. +++. +++++||+
T Consensus 13 aG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~------~~~---------~~v~i~~~~~-~a~~~aDv 76 (326)
T 3pqe_A 13 AGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKA------FAP---------QPVKTSYGTY-EDCKDADI 76 (326)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGG------GSS---------SCCEEEEECG-GGGTTCSE
T ss_pred CCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccc------ccc---------CCeEEEeCcH-HHhCCCCE
Confidence 69999999999999887 899999998766542222222100 000 11222 3344 47899999
Q ss_pred EEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
||.+..- |..+-+++.+.+.++++ ++++.
T Consensus 77 Vvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vl 119 (326)
T 3pqe_A 77 VCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFL 119 (326)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEE
T ss_pred EEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEE
Confidence 9998742 22344566667888765 55444
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0064 Score=54.32 Aligned_cols=92 Identities=14% Similarity=0.019 Sum_probs=56.2
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..|+ ++.++|++++.++.-...+.+..... . ...++..+++. +++++||+|
T Consensus 8 aG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~-------~------~~~~v~~~~~~-~a~~~aDvV 73 (314)
T 3nep_X 8 AGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIH-------G------FDTRVTGTNDY-GPTEDSDVC 73 (314)
T ss_dssp CSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHH-------T------CCCEEEEESSS-GGGTTCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccccc-------C------CCcEEEECCCH-HHhCCCCEE
Confidence 58999999999998887 89999999976543222222211000 0 00123323444 479999999
Q ss_pred EEccccc--------------hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPEI--------------LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe~--------------~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+..-+ ..+-+++.+.+.++++ ++++.
T Consensus 74 ii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vi 115 (314)
T 3nep_X 74 IITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTII 115 (314)
T ss_dssp EECCCC-------CHHHHHHHHHHHHHHHHHHHTTCT-TCEEE
T ss_pred EECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCC-CcEEE
Confidence 9987432 2344555567788764 55444
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=60.14 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=72.2
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH------HHhcccCCCCceeeeccCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS------VLSEHSTHRSQFIVAHPVNPPY 74 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~------~l~~~~~~~~r~~g~hf~~P~~ 74 (290)
++|+++++++||+||.|||.. ..+++++++...+++++++.|.+.++... .+.+.+.. .++.- ...|..
T Consensus 90 t~d~~ea~~~aDvVilaVp~~--~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~v--lsgP~~ 164 (356)
T 3k96_A 90 YCDLKASLEGVTDILIVVPSF--AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAV--ISGPSL 164 (356)
T ss_dssp ESCHHHHHTTCCEEEECCCHH--HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEE--EESSCC
T ss_pred ECCHHHHHhcCCEEEECCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEE--EECccH
Confidence 368999999999999999975 78899999999999999999999888775 23343321 11111 123322
Q ss_pred C------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 75 F------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 75 ~------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
. .+..=++.+ .+++..+.+.+++...+..+... .|..|
T Consensus 165 a~ev~~g~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~-~Di~g 208 (356)
T 3k96_A 165 ATEVAANLPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKN-DDMIG 208 (356)
T ss_dssp HHHHHTTCCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEE-SCHHH
T ss_pred HHHHHcCCCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEe-CCHHH
Confidence 1 112112222 46788888888888888766654 56544
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0065 Score=47.37 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=47.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.||..++..+...|++|.++|++++..++..+. .| .......++.+++.++|+||.
T Consensus 29 ~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~----------~~------------~~~~~~~~~~~~~~~~Divi~ 86 (144)
T 3oj0_A 29 NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEK----------YE------------YEYVLINDIDSLIKNNDVIIT 86 (144)
T ss_dssp CSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHH----------HT------------CEEEECSCHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHH----------hC------------CceEeecCHHHHhcCCCEEEE
Confidence 68999999998888899999999999876653331 11 011234677778899999999
Q ss_pred ccccc
Q psy17416 202 SVPEI 206 (290)
Q Consensus 202 avpe~ 206 (290)
|+|..
T Consensus 87 at~~~ 91 (144)
T 3oj0_A 87 ATSSK 91 (144)
T ss_dssp CSCCS
T ss_pred eCCCC
Confidence 99965
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.015 Score=51.83 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=65.4
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..|+ ++.++|++++.++.-...+.+.. ... + ..++.+.+..+++++||+|
T Consensus 14 aG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~------~~~-~--------~~~~v~~~~~~a~~~aDvV 78 (317)
T 3d0o_A 14 NGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT------PYS-P--------TTVRVKAGEYSDCHDADLV 78 (317)
T ss_dssp CSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG------GGS-S--------SCCEEEECCGGGGTTCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh------hhc-C--------CCeEEEeCCHHHhCCCCEE
Confidence 58889999998888885 89999999876653222222110 000 0 1112222335579999999
Q ss_pred EEccccch--------------HHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhcc----CC-CCCcEEEe
Q psy17416 200 QESVPEIL--------------QIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH----ST-HRSQFIVA 252 (290)
Q Consensus 200 ieavpe~~--------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~----~~-~~~r~ig~ 252 (290)
|.+++-.. .+-+++.+++.+++ +++++.. .+-++..+... .. .|.|++|+
T Consensus 79 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv--~tNPv~~~t~~~~k~~~~p~~rviG~ 147 (317)
T 3d0o_A 79 VICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLV--ATNPVDILAYATWKFSGLPKERVIGS 147 (317)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEE--CSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE--ecCcHHHHHHHHHHHhCCCHHHEEec
Confidence 99985432 34455666777775 4555543 22444433322 12 24577776
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0085 Score=48.59 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHc-CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh--cccCcE
Q psy17416 122 HGLIGQAWAMIFASA-GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC--LEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~-G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~--l~~aDl 198 (290)
+|.+|..++..+... |++|+++|++++..+.+.+ .|... ..+...-...+.++ +.++|+
T Consensus 47 ~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-----------~g~~~-------~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 47 MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-----------EGRNV-------ISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-----------TTCCE-------EECCTTCHHHHHTBCSCCCCCE
T ss_pred CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-----------CCCCE-------EEcCCCCHHHHHhccCCCCCCE
Confidence 699999999999998 9999999999987765433 22210 00000000113333 678999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
||.++|.+... ..++..+...-+...+++
T Consensus 109 vi~~~~~~~~~-~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 109 VLLAMPHHQGN-QTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp EEECCSSHHHH-HHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCChHHH-HHHHHHHHHHCCCCEEEE
Confidence 99999975433 233333333332334444
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.016 Score=51.84 Aligned_cols=90 Identities=12% Similarity=0.097 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..++ ++.++|++++.++.....+.+.. .....++++.+..+++++||+|
T Consensus 13 aG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----------------~~~~~~~v~~~~~~a~~~aDvV 76 (318)
T 1ez4_A 13 DGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ----------------AFTAPKKIYSGEYSDCKDADLV 76 (318)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG----------------GGSCCCEEEECCGGGGTTCSEE
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH----------------HhcCCeEEEECCHHHhCCCCEE
Confidence 58889999999888876 89999999877653222221110 0112222333344579999999
Q ss_pred EEccccch--------------HHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPEIL--------------QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe~~--------------~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.+-.. .+-+++.+.+.+++ +++++.
T Consensus 77 ii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~ii 118 (318)
T 1ez4_A 77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFL 118 (318)
T ss_dssp EECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEE
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 99875432 34455556677775 455444
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.011 Score=53.11 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=55.9
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..|+ ++.++|++++.++.-...+.+.. .....+..+++..+++++||+|
T Consensus 17 aG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~----------------~~~~~~~i~~~~~~a~~~aDiV 80 (326)
T 3vku_A 17 DGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL----------------PFTSPKKIYSAEYSDAKDADLV 80 (326)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----------------GGSCCCEEEECCGGGGTTCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh----------------hhcCCcEEEECcHHHhcCCCEE
Confidence 58999999999998887 89999999876543222222110 0112233333434579999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+..- |..+-+++.+.+.++++ ++++.
T Consensus 81 vi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~il 122 (326)
T 3vku_A 81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFL 122 (326)
T ss_dssp EECCCCC----------------CHHHHHHHHHTTTC-CSEEE
T ss_pred EECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEE
Confidence 988542 22334566667888765 55444
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.014 Score=45.37 Aligned_cols=86 Identities=12% Similarity=0.216 Sum_probs=54.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC--CCCCChhhhhcccccCCchHh-hcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL--KGSLSPEEQFGLISGTPVLRE-CLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~--~~~~~~~~~~~~i~~~~~l~~-~l~~aDl 198 (290)
+|.+|..++..+...|++|+++|++++.++++.+ .|.. .+..... ..+.+ .+.++|+
T Consensus 15 ~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-----------~g~~~i~gd~~~~---------~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 15 YGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-----------RGVRAVLGNAANE---------EIMQLAHLECAKW 74 (140)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----------TTCEEEESCTTSH---------HHHHHTTGGGCSE
T ss_pred cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------cCCCEEECCCCCH---------HHHHhcCcccCCE
Confidence 6899999999999999999999999998776544 2221 1110000 11222 2578999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
||.++|.+..... +...+....+...+++
T Consensus 75 vi~~~~~~~~n~~-~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 75 LILTIPNGYEAGE-IVASARAKNPDIEIIA 103 (140)
T ss_dssp EEECCSCHHHHHH-HHHHHHHHCSSSEEEE
T ss_pred EEEECCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 9999998764422 2223333333334554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.015 Score=44.34 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=55.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCC--CCCCCChhhhhcccccCCchH-hhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGC--LKGSLSPEEQFGLISGTPVLR-ECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~--~~~~~~~~~~~~~i~~~~~l~-~~l~~aDl 198 (290)
+|.+|..++..+...|++|.++|++++.++...+ +.|. ..+.... ...+. ..+.++|+
T Consensus 12 ~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----------~~~~~~~~~d~~~---------~~~l~~~~~~~~d~ 72 (140)
T 1lss_A 12 IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----------EIDALVINGDCTK---------IKTLEDAGIEDADM 72 (140)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HCSSEEEESCTTS---------HHHHHHTTTTTCSE
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----------hcCcEEEEcCCCC---------HHHHHHcCcccCCE
Confidence 6899999999999999999999999987654332 0121 0110000 01122 12678999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
||.++|.+. ....+.++.+.++++.+++..
T Consensus 73 vi~~~~~~~--~~~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 73 YIAVTGKEE--VNLMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp EEECCSCHH--HHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEeeCCch--HHHHHHHHHHHcCCCEEEEEe
Confidence 999998653 223444555557777777643
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00084 Score=61.60 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|..++..+...|.+|..+|++++.++.+.+. .|.. ... . .....++.+.++++|+||.
T Consensus 176 ~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~----------~g~~---~~~----~-~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 176 AGTAGYNAARIANGMGATVTVLDINIDKLRQLDAE----------FCGR---IHT----R-YSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTS---SEE----E-ECCHHHHHHHHHHCSEEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh----------cCCe---eEe----c-cCCHHHHHHHHcCCCEEEE
Confidence 58999999999999999999999999887655431 1110 000 0 0001345667789999999
Q ss_pred ccccchH-HHHHHHHHHhhhCCCCcEEE
Q psy17416 202 SVPEILQ-IKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 202 avpe~~~-~k~~~~~~l~~~~~~~~ii~ 228 (290)
|++-... ...-+.++..+.++++++|+
T Consensus 238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV 265 (377)
T 2vhw_A 238 AVLVPGAKAPKLVSNSLVAHMKPGAVLV 265 (377)
T ss_dssp CCCCTTSCCCCCBCHHHHTTSCTTCEEE
T ss_pred CCCcCCCCCcceecHHHHhcCCCCcEEE
Confidence 8853321 11112344455678888776
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0068 Score=57.35 Aligned_cols=108 Identities=12% Similarity=0.075 Sum_probs=69.0
Q ss_pred CCcHHhhcccCcEEEEcccCCh-------------HHHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCce
Q psy17416 1 TPVLRECLEDAIFIQESVPEIL-------------QIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQF 64 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~-------------~~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~ 64 (290)
|+|+++++++||+||.|||... ....++++++.+.+++++++. +.|++++. +++..+..-.+.
T Consensus 77 t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~gt~~~l~~~l~~~~~~ 155 (481)
T 2o3j_A 77 SSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVV-EKSTVPVKAAESIGCILREAQKN 155 (481)
T ss_dssp ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHTC-
T ss_pred ECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEE-ECCCCCCCHHHHHHHHHHHhhCc
Confidence 3577888999999999998754 246788899999999999886 55566654 343333210010
Q ss_pred e-eec---cCCCCCCCCee---------eEeeCCCCC---HHHHHHHHHHHHHhCC-ccEEE
Q psy17416 65 I-VAH---PVNPPYFIPLV---------EIVPAAWTS---ERVITRTREIMTEIGM-KPVTL 109 (290)
Q Consensus 65 ~-g~h---f~~P~~~~~lv---------Eiv~~~~t~---~~~~~~~~~~~~~lgk-~~v~v 109 (290)
. +.. .++|....+-. .|+-|..++ +++++.+.+++..+++ .++.+
T Consensus 156 ~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 217 (481)
T 2o3j_A 156 NENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIIT 217 (481)
T ss_dssp ---CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEE
T ss_pred CcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEe
Confidence 0 111 24555443322 465554443 3688889999999996 67765
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0028 Score=57.07 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=66.4
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh-----HHHh----cccCCCCceeeeccCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-----SVLS----EHSTHRSQFIVAHPVNP 72 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~-----~~l~----~~~~~~~r~~g~hf~~P 72 (290)
+|+++++++||+||.|++. ....++++++...+++++++.|.++++++ ..++ .....+ +. ....|
T Consensus 82 ~~~~~~~~~aD~Vilav~~--~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~--~~--v~~gp 155 (354)
T 1x0v_A 82 PDVVQAAEDADILIFVVPH--QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP--MS--VLMGA 155 (354)
T ss_dssp SSHHHHHTTCSEEEECCCG--GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC--EE--EEECS
T ss_pred cCHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC--EE--EEECC
Confidence 5788889999999999997 46889999999999999999999988864 1221 111111 10 11122
Q ss_pred CCC------CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccc
Q psy17416 73 PYF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 113 (290)
Q Consensus 73 ~~~------~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~ 113 (290)
... .+ ..++.+ ..+++..+.+.+++...|...... .|.
T Consensus 156 ~~a~~v~~g~~-~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~-~di 199 (354)
T 1x0v_A 156 NIASEVADEKF-CETTIG-CKDPAQGQLLKELMQTPNFRITVV-QEV 199 (354)
T ss_dssp CCHHHHHTTCC-EEEEEE-CSSHHHHHHHHHHHCBTTEEEEEE-SCH
T ss_pred CcHHHHHhcCC-ceEEEE-ECCHHHHHHHHHHhCCCCEEEEEc-CCc
Confidence 210 11 122222 245778888888888888755544 443
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.024 Score=50.87 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=55.7
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..++ ++.++|++++.++.....+.+. . .....++++.+..+++++||+|
T Consensus 17 aG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~--------~--------~~~~~~~i~~~~~~a~~~aDvV 80 (326)
T 2zqz_A 17 DGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA--------L--------PFTSPKKIYSAEYSDAKDADLV 80 (326)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTT--------G--------GGSCCCEEEECCGGGGGGCSEE
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHH--------H--------HhcCCeEEEECCHHHhCCCCEE
Confidence 58889999998888776 8999999987665322212111 0 0112222333445579999999
Q ss_pred EEccccch--------------HHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPEIL--------------QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe~~--------------~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.+-.. .+-+++.+.+.++++ ++++.
T Consensus 81 ii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p-~a~ii 122 (326)
T 2zqz_A 81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFL 122 (326)
T ss_dssp EECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTC-CSEEE
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 99875432 334555567777764 45444
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0047 Score=56.85 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=67.9
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHh-cccC-CCCceeeeccCCCCC-CC-
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS-EHST-HRSQFIVAHPVNPPY-FI- 76 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~-~~~~-~~~r~~g~hf~~P~~-~~- 76 (290)
++|++++++++|+||.||+... +.+++++|...+++++++.+++++..+.... ..+. .+.+.+..+|.++++ ..
T Consensus 73 ~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 150 (404)
T 3c7a_A 73 TKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAGFEFQCRDILGDKAAAVSMMSFETLPWACRI 150 (404)
T ss_dssp ESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTTHHHHHHHHHGGGGGTSEEEEESSCSEEEEE
T ss_pred eCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCccHHHHHHHHHHhcCCCeEEEEecCchHhhcc
Confidence 3578889999999999999986 6899999999999999999987777655322 2221 233333334322221 11
Q ss_pred --C--eeeEeeCCC------C--CHHHHHHHHHHHHHhCCcc-EEEecc
Q psy17416 77 --P--LVEIVPAAW------T--SERVITRTREIMTEIGMKP-VTLTTE 112 (290)
Q Consensus 77 --~--lvEiv~~~~------t--~~~~~~~~~~~~~~lgk~~-v~v~~d 112 (290)
| .+|+..+.. + +.+..+.+.+.+.+++..| +....|
T Consensus 151 ~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d 199 (404)
T 3c7a_A 151 KEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKH 199 (404)
T ss_dssp EETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHHHCSSSEEEECSC
T ss_pred cCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHHhCCCCceeEcCC
Confidence 1 355433220 0 1122345667788888766 555344
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0014 Score=59.11 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=61.0
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccCC-CCceeeeccCC--CCC--
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVN--PPY-- 74 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~-~~r~~g~hf~~--P~~-- 74 (290)
++++.+++||+|+.++|.+.+.+.-+.+++-+.++++ ++ .|+|.-++. .|...++. .-+..|+++|. |.+
T Consensus 193 ~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-il-in~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~ 270 (333)
T 2d0i_A 193 DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YL-VNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREH 270 (333)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EE-EECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCC
T ss_pred CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EE-EECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCc
Confidence 6888899999999999999877776655555677888 55 777766554 46666643 34558999999 543
Q ss_pred -CCCee-eEeeCCCCC
Q psy17416 75 -FIPLV-EIVPAAWTS 88 (290)
Q Consensus 75 -~~~lv-Eiv~~~~t~ 88 (290)
+..+. .++.+|+++
T Consensus 271 ~L~~~~~nviltPh~~ 286 (333)
T 2d0i_A 271 ELFKYEWETVLTPHYA 286 (333)
T ss_dssp GGGGCTTTEEECCSCT
T ss_pred hHHcCCCCEEEcCccC
Confidence 45566 788777774
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.019 Score=50.55 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=60.2
Q ss_pred ccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 111 TEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 111 ~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
...-|+++ +|.+|+.++..+...|.+|..+|++++..+.+.+ .|.. .+. ..+++
T Consensus 155 g~~v~IiG---~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~~-----------~~~-~~~l~ 208 (293)
T 3d4o_A 155 GANVAVLG---LGRVGMSVARKFAALGAKVKVGARESDLLARIAE-----------MGME-----------PFH-ISKAA 208 (293)
T ss_dssp TCEEEEEC---CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------TTSE-----------EEE-GGGHH
T ss_pred CCEEEEEe---eCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CCCe-----------ecC-hhhHH
Confidence 34455565 7999999999999999999999999876543321 1110 000 24677
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++++|+|+.++|..+--+ +..+.++++++++.
T Consensus 209 ~~l~~aDvVi~~~p~~~i~~-----~~l~~mk~~~~lin 242 (293)
T 3d4o_A 209 QELRDVDVCINTIPALVVTA-----NVLAEMPSHTFVID 242 (293)
T ss_dssp HHTTTCSEEEECCSSCCBCH-----HHHHHSCTTCEEEE
T ss_pred HHhcCCCEEEECCChHHhCH-----HHHHhcCCCCEEEE
Confidence 77899999999999654222 22335788888873
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0014 Score=59.79 Aligned_cols=93 Identities=10% Similarity=0.144 Sum_probs=65.1
Q ss_pred CcHHhhcccC---cEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccCCCCceeeeccCCCC---
Q psy17416 2 PVLRECLEDA---IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPP--- 73 (290)
Q Consensus 2 ~~l~~~~~~~---d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~~~~r~~g~hf~~P~--- 73 (290)
+|++++++++ |+||-|+|.+ .-.+++.++...+++++++...+++.+.+ ++++.+.. + |+||...|
T Consensus 70 ~s~~e~~~~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~vdapVsG 143 (358)
T 4e21_A 70 RSIEEFCAKLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRA--Q--GITYVDVGTSG 143 (358)
T ss_dssp SSHHHHHHHSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHT--T--TCEEEEEEEEC
T ss_pred CCHHHHHhcCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHH--C--CCEEEeCCCCC
Confidence 6888888888 9999999999 44567899999999999998877766544 45544421 1 44443211
Q ss_pred --CCC--CeeeEeeCCCCCHHHHHHHHHHHHHhC
Q psy17416 74 --YFI--PLVEIVPAAWTSERVITRTREIMTEIG 103 (290)
Q Consensus 74 --~~~--~lvEiv~~~~t~~~~~~~~~~~~~~lg 103 (290)
... -. -++.| .+++.++.+..+++.+|
T Consensus 144 g~~~a~~G~-~im~G--G~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 144 GIFGLERGY-CLMIG--GEKQAVERLDPVFRTLA 174 (358)
T ss_dssp GGGHHHHCC-EEEEE--SCHHHHHHTHHHHHHHS
T ss_pred CHHHHhcCC-eeeec--CCHHHHHHHHHHHHHhc
Confidence 100 01 24444 36899999999999999
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0089 Score=53.05 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=59.1
Q ss_pred CcHHhhcccCcEEEEcccCCh------------------HHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhccc--C
Q psy17416 2 PVLRECLEDAIFIQESVPEIL------------------QIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHS--T 59 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~------------------~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~--~ 59 (290)
+|+ +++++||+||.|++... ++++++++++.+.++ ++++ .||..+. +++++... -
T Consensus 62 ~d~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~-~~~~~~~~~~~ 138 (309)
T 1hyh_A 62 NDW-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDV-ITALFQHVTGF 138 (309)
T ss_dssp SCG-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHH-HHHHHHHHHCC
T ss_pred CCH-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHH-HHHHHHHhcCC
Confidence 467 68999999999998743 568899999999885 6644 5665554 33444331 3
Q ss_pred CCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 60 HRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 60 ~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
.|+|++|+ .|.-++......+.+.+|..|
T Consensus 139 ~~~rvig~------------------gt~ld~~r~~~~~a~~l~~~~ 167 (309)
T 1hyh_A 139 PAHKVIGT------------------GTLLDTARMQRAVGEAFDLDP 167 (309)
T ss_dssp CGGGEEEC------------------TTHHHHHHHHHHHHHHHTCCG
T ss_pred CHHHEeec------------------CccchHHHHHHHHHHHhCCCh
Confidence 47899999 466566666666777788654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.011 Score=52.11 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=61.0
Q ss_pred ccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 111 TEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 111 ~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
...-|+++ +|.+|+.++..+...|.+|..+|++++..+.+.+ .|. ..+. ..+++
T Consensus 157 g~~v~IiG---~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g~-----------~~~~-~~~l~ 210 (300)
T 2rir_A 157 GSQVAVLG---LGRTGMTIARTFAALGANVKVGARSSAHLARITE-----------MGL-----------VPFH-TDELK 210 (300)
T ss_dssp TSEEEEEC---CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------TTC-----------EEEE-GGGHH
T ss_pred CCEEEEEc---ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCC-----------eEEc-hhhHH
Confidence 34455665 7999999999999999999999999876543322 111 0001 24677
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++++|+|+.++|..+-- ++..+.++++++++.
T Consensus 211 ~~l~~aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin 244 (300)
T 2rir_A 211 EHVKDIDICINTIPSMILN-----QTVLSSMTPKTLILD 244 (300)
T ss_dssp HHSTTCSEEEECCSSCCBC-----HHHHTTSCTTCEEEE
T ss_pred HHhhCCCEEEECCChhhhC-----HHHHHhCCCCCEEEE
Confidence 7889999999999974422 223356888988873
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0073 Score=54.20 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=64.9
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc---CCchHhhcccC
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG---TPVLRECLEDA 196 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~~l~~~l~~a 196 (290)
.|.+|..++..++..| .+|.++|++++ ...+.+ + . .... . ..+.. ++++.+++++|
T Consensus 17 aG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~d-----L---~-~~~~----~-----~~v~~~~~t~d~~~al~ga 77 (326)
T 1smk_A 17 AGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTAD-----I---S-HMDT----G-----AVVRGFLGQQQLEAALTGM 77 (326)
T ss_dssp TSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHH-----H---H-TSCS----S-----CEEEEEESHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHH-----h---h-cccc----c-----ceEEEEeCCCCHHHHcCCC
Confidence 4788899998888888 78999998876 111111 1 0 1000 0 12222 45788889999
Q ss_pred cEEEEccccch--------------HHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH----Hh----ccCC-CCCcEEEec
Q psy17416 197 IFIQESVPEIL--------------QIKHQVYRAIDIFMSSNTILSSSTSSFLPSV----LS----EHST-HRSQFIVAH 253 (290)
Q Consensus 197 DlVieavpe~~--------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~----la----~~~~-~~~r~ig~H 253 (290)
|+||.+..-.. ..-+++.+.+.+..+ ++++... +-|+.. ++ .... .+.|++|+-
T Consensus 78 DvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv~--SNPv~~~~~~~t~~~~~~~~~p~~rviG~~ 154 (326)
T 1smk_A 78 DLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNLI--SNPVNSTVPIAAEVFKKAGTYDPKRLLGVT 154 (326)
T ss_dssp SEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEEC--CSSHHHHHHHHHHHHHHHTCCCTTSEEECC
T ss_pred CEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEE--CCchHHHHHHHHHHHHHccCCCcccEEEEe
Confidence 99999874221 455666677777764 4444432 344443 32 2222 245777774
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0016 Score=61.66 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=43.1
Q ss_pred CCcHHhhcccCcEEEEcc----------cCChHHH------------------------------HHHHHHHHhhcCCCc
Q psy17416 1 TPVLRECLEDAIFIQESV----------PEILQIK------------------------------HQVYRAIDIFMSSNT 40 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~----------~e~~~~K------------------------------~~~~~~~~~~~~~~~ 40 (290)
|+|+++|++|||+||+++ +|++..| +++.+++.+.| |++
T Consensus 68 ttD~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P~A 146 (480)
T 1obb_A 68 TMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKA 146 (480)
T ss_dssp ESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTC
T ss_pred ECCHHHHhCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-CCe
Confidence 478989999999999999 4544444 45666777776 666
Q ss_pred EEeecCCCCChHHHhcccC--CCCceeee
Q psy17416 41 ILSSSTSSFLPSVLSEHST--HRSQFIVA 67 (290)
Q Consensus 41 i~~snts~~~~~~l~~~~~--~~~r~~g~ 67 (290)
++ -|.|| |+.-++..+. .+.|++|+
T Consensus 147 ~i-i~~TN-Pvdi~t~~~~k~p~~rviG~ 173 (480)
T 1obb_A 147 WY-LQAAN-PIFEGTTLVTRTVPIKAVGF 173 (480)
T ss_dssp EE-EECSS-CHHHHHHHHHHHSCSEEEEE
T ss_pred EE-EEeCC-cHHHHHHHHHHCCCCcEEec
Confidence 66 44434 7776665553 24566665
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.039 Score=49.07 Aligned_cols=91 Identities=21% Similarity=0.134 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..+ .++.++|++++.++.....+.+. . +....-+++. ++ .+++++||+|
T Consensus 8 aG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~--------~------~~~~~~~v~~-~~-~~a~~~aD~V 71 (310)
T 2xxj_A 8 SGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHA--------T------PFAHPVWVWA-GS-YGDLEGARAV 71 (310)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTT--------G------GGSCCCEEEE-CC-GGGGTTEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHh--------H------hhcCCeEEEE-CC-HHHhCCCCEE
Confidence 5888999998888876 48999999987665322211110 0 0000012222 34 4579999999
Q ss_pred EEccccc--------------hHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPEI--------------LQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe~--------------~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.+-. ..+-+++.+++.++++...++.
T Consensus 72 ii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv 114 (310)
T 2xxj_A 72 VLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114 (310)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEE
Confidence 9987533 3345566677888865544443
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0047 Score=53.19 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=62.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh---HHHhcccCCCCceeeeccCCCCCC--C
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP---SVLSEHSTHRSQFIVAHPVNPPYF--I 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~---~~l~~~~~~~~r~~g~hf~~P~~~--~ 76 (290)
+|++++++++|+||.|+|.+...+. + .++...+++ .++-. |+.+. .+|++.+..+. +++.+++.++.. .
T Consensus 48 ~~~~~~~~~aDvvi~~v~~~~~~~~-~-~~~~~~~~~-~vi~~--s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~ 121 (264)
T 1i36_A 48 ETSEEDVYSCPVVISAVTPGVALGA-A-RRAGRHVRG-IYVDI--NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGA 121 (264)
T ss_dssp ECCHHHHHTSSEEEECSCGGGHHHH-H-HHHHTTCCS-EEEEC--SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGG
T ss_pred CCHHHHHhcCCEEEEECCCHHHHHH-H-HHHHHhcCc-EEEEc--cCCCHHHHHHHHHHHhhCC-eeeeeeeCCcccccc
Confidence 3567788999999999999877665 3 566666666 44433 44443 36777776544 777777766541 1
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
...-++.++. . +.+.. ++.+|+.++.+
T Consensus 122 g~~~~~~g~~-~----~~~~~-l~~~g~~~~~~ 148 (264)
T 1i36_A 122 DIRIIASGRD-A----EEFMK-LNRYGLNIEVR 148 (264)
T ss_dssp GCEEEEESTT-H----HHHHG-GGGGTCEEEEC
T ss_pred CCeEEecCCc-H----HHhhh-HHHcCCeeEEC
Confidence 2222334432 2 56667 88899987777
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.011 Score=52.83 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|...+..++..|+ +|.++|++++.++.....+. .+. ... ..-+++. ++ .+++++||+|
T Consensus 15 aG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~--------~~~--~~~----~~~~i~~-~~-~~a~~~aDvV 78 (318)
T 1y6j_A 15 AGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDIN--------HGL--PFM----GQMSLYA-GD-YSDVKDCDVI 78 (318)
T ss_dssp CSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHT--------TSC--CCT----TCEEEC---C-GGGGTTCSEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH--------HhH--Hhc----CCeEEEE-CC-HHHhCCCCEE
Confidence 58899999999998887 99999999866542111110 111 000 0112332 34 4469999999
Q ss_pred EEccccch--------------HHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVPEIL--------------QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavpe~~--------------~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+++-.. .+-+++.+.+.+++ +++++.
T Consensus 79 ii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi 120 (318)
T 1y6j_A 79 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVIL 120 (318)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEE
T ss_pred EEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEE
Confidence 99987543 12356667788886 455554
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0041 Score=56.69 Aligned_cols=107 Identities=15% Similarity=0.060 Sum_probs=66.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHh----hcCCCcEEeecCCCCChH-----HHhcccC--CCCceeeeccC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDI----FMSSNTILSSSTSSFLPS-----VLSEHST--HRSQFIVAHPV 70 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~----~~~~~~i~~snts~~~~~-----~l~~~~~--~~~r~~g~hf~ 70 (290)
+|+++++++||+||.||+. ....++++++.. .+++++++.|.++++++. .+++.+. .+..+. -..
T Consensus 95 ~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~--v~~ 170 (375)
T 1yj8_A 95 SDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCS--ALS 170 (375)
T ss_dssp SSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEE--EEE
T ss_pred CCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEE--EEe
Confidence 5788889999999999996 678899999998 889999999999887661 2222111 011110 011
Q ss_pred CCCCCC-----CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEeccce
Q psy17416 71 NPPYFI-----PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 114 (290)
Q Consensus 71 ~P~~~~-----~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~ 114 (290)
.|.... ....++.+. .+++..+.+.+++...|..+... .|..
T Consensus 171 gp~~a~~v~~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~~~~~~-~di~ 217 (375)
T 1yj8_A 171 GANIAMDVAMENFSEATIGG-NDKDSLVIWQRVFDLPYFKINCV-NETI 217 (375)
T ss_dssp CSCCHHHHHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEE-SCSH
T ss_pred CCchHHHHHhCCCeEEEEec-CCHHHHHHHHHHhCCCCeEEEEe-CCcH
Confidence 222110 111222222 35677888888888888765554 4543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0084 Score=44.36 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.+|..++..+...| ++|.++|++++.++.... .+... ....+.-..++.+.++++|+||
T Consensus 13 ~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~-----------~~~~~-------~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 13 AGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR-----------MGVAT-------KQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp CSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT-----------TTCEE-------EECCTTCHHHHHHHTTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-----------CCCcE-------EEecCCCHHHHHHHHcCCCEEE
Confidence 4889999999999999 999999999987654431 11100 0011111234556778999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
.++|...
T Consensus 75 ~~~~~~~ 81 (118)
T 3ic5_A 75 SAAPFFL 81 (118)
T ss_dssp ECSCGGG
T ss_pred ECCCchh
Confidence 9998655
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0016 Score=58.75 Aligned_cols=99 Identities=24% Similarity=0.175 Sum_probs=65.5
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|+++ +|.||+.+|..+...|++|..||++++.. + + ..+. ..++++.
T Consensus 148 ~vgIiG---~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~-------------------------~~~~-~~~l~el 195 (331)
T 1xdw_A 148 TVGVVG---LGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-E-------------------------DYCT-QVSLDEV 195 (331)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-T-------------------------TTCE-ECCHHHH
T ss_pred EEEEEC---cCHHHHHHHHHHHHCCCEEEEECCCccHH--H-H-------------------------hccc-cCCHHHH
Confidence 345554 79999999999999999999999876421 0 0 0011 2378888
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHS 243 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~ 243 (290)
+++||+|+.++|-..+.+.-+-++..+.++++++++..+.+ ..-..+...+
T Consensus 196 l~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL 248 (331)
T 1xdw_A 196 LEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248 (331)
T ss_dssp HHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred HhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHH
Confidence 89999999999976543332224555678999988733322 2233455444
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.015 Score=54.26 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=65.2
Q ss_pred CCcHHhhcccCcEEEEcccCChHH---------HHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeec
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQI---------KHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAH 68 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~---------K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~h 68 (290)
|+|+++++++||+||.|+|++.+. =.++.+.+.+ +++++++. +.|++++. ++++.+. ++ ++-
T Consensus 100 ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~--~~--~v~ 173 (432)
T 3pid_A 100 TTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLG--ID--NVI 173 (432)
T ss_dssp ESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHT--CC--CEE
T ss_pred EcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHh--hc--cEe
Confidence 478999999999999999998642 2456677877 78888775 67778875 5555443 22 443
Q ss_pred cCCCCCCCCee---------eEeeCCCCCHHHHHHHHHHHHH--hCC-ccEEE
Q psy17416 69 PVNPPYFIPLV---------EIVPAAWTSERVITRTREIMTE--IGM-KPVTL 109 (290)
Q Consensus 69 f~~P~~~~~lv---------Eiv~~~~t~~~~~~~~~~~~~~--lgk-~~v~v 109 (290)
| +|....+-- -|+.|. +++..+.+..++.. +++ .|+.+
T Consensus 174 ~-sPe~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~ 223 (432)
T 3pid_A 174 F-SPEFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLF 223 (432)
T ss_dssp E-CCCCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEE
T ss_pred e-cCccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEe
Confidence 3 777654321 355553 23456777777776 443 35554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0082 Score=47.43 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlVi 200 (290)
+|.+|..++..+...|++|+++|++++.++.+.+ +.|... ......-...+.++ +.++|+||
T Consensus 27 ~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~----------~~g~~~-------~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 27 CGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS----------EFSGFT-------VVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT----------TCCSEE-------EESCTTSHHHHHTTTGGGCSEEE
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh----------cCCCcE-------EEecCCCHHHHHHcCcccCCEEE
Confidence 6999999999999999999999999876543220 011100 00000000112222 67899999
Q ss_pred EccccchHHHHHHHHHHhhh-CCCCcEEEeCC
Q psy17416 201 ESVPEILQIKHQVYRAIDIF-MSSNTILSSST 231 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~-~~~~~ii~s~t 231 (290)
.|++.+.. ......+.+. .+...+++..+
T Consensus 90 ~~~~~~~~--~~~~~~~~~~~~~~~~iv~~~~ 119 (155)
T 2g1u_A 90 AFTNDDST--NFFISMNARYMFNVENVIARVY 119 (155)
T ss_dssp ECSSCHHH--HHHHHHHHHHTSCCSEEEEECS
T ss_pred EEeCCcHH--HHHHHHHHHHHCCCCeEEEEEC
Confidence 99996542 2333444444 44444554333
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.029 Score=50.01 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHcC--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc---CCchHhhcccCc
Q psy17416 123 GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG---TPVLRECLEDAI 197 (290)
Q Consensus 123 G~~g~~ia~~~~~~G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~~l~~~l~~aD 197 (290)
|.+|..++..++..| .++.++|+++ ....+.+ + ..+. ...+++. ++|+++++++||
T Consensus 10 G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~d-----L----~~~~---------~~~~l~~~~~t~d~~~a~~~aD 70 (314)
T 1mld_A 10 GGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAAD-----L----SHIE---------TRATVKGYLGPEQLPDCLKGCD 70 (314)
T ss_dssp STTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHHH-----H----TTSS---------SSCEEEEEESGGGHHHHHTTCS
T ss_pred ChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHHH-----H----hccC---------cCceEEEecCCCCHHHHhCCCC
Confidence 888999999988888 6899999987 1111111 1 0111 0123444 367888899999
Q ss_pred EEEEccccc--h------------HHHHHHHHHHhhhCCCCcEEE
Q psy17416 198 FIQESVPEI--L------------QIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 198 lVieavpe~--~------------~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||.+..-. . .+-+++.+.+.++++...++.
T Consensus 71 vVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv 115 (314)
T 1mld_A 71 VVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 115 (314)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 999986322 1 456667777888775544443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.012 Score=55.79 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=59.2
Q ss_pred cceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 112 EIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 112 d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-.-|+++ .|.+|+.+|..+...|.+|..+|+++.....+.. . + .. ..++++
T Consensus 278 ktVgIIG---~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~-----------~----G----------~~-~~~l~e 328 (494)
T 3d64_A 278 KIAVVAG---YGDVGKGCAQSLRGLGATVWVTEIDPICALQAAM-----------E----G----------YR-VVTMEY 328 (494)
T ss_dssp CEEEEEC---CSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHT-----------T----T----------CE-ECCHHH
T ss_pred CEEEEEc---cCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHH-----------c----C----------CE-eCCHHH
Confidence 3445555 7999999999999999999999999875322221 1 1 11 246888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++++||+|+.++. ...+ +-++..+.++++++|+.
T Consensus 329 ll~~aDiVi~~~~-t~~l---I~~~~l~~MK~gAilIN 362 (494)
T 3d64_A 329 AADKADIFVTATG-NYHV---INHDHMKAMRHNAIVCN 362 (494)
T ss_dssp HTTTCSEEEECSS-SSCS---BCHHHHHHCCTTEEEEE
T ss_pred HHhcCCEEEECCC-cccc---cCHHHHhhCCCCcEEEE
Confidence 9999999999983 2211 11344557899999873
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.057 Score=47.76 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=62.0
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecC--CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDV--LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~--~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aD 197 (290)
.|.+|..++..++..|+ ++.++|+ +++.++.....+.+. .. . ... -+++. ++ .+++++||
T Consensus 9 aG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~----~~--~-~~~-------~~v~~-~~-~~a~~~aD 72 (303)
T 1o6z_A 9 AGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG----IA--Y-DSN-------TRVRQ-GG-YEDTAGSD 72 (303)
T ss_dssp TSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH----HT--T-TCC-------CEEEE-CC-GGGGTTCS
T ss_pred CChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHH----Hh--h-CCC-------cEEEe-CC-HHHhCCCC
Confidence 57888999888887775 7899999 876543211111111 00 0 000 12222 23 45799999
Q ss_pred EEEEccccch--------------HHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhc-cCC-CCCcEEEe
Q psy17416 198 FIQESVPEIL--------------QIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSE-HST-HRSQFIVA 252 (290)
Q Consensus 198 lVieavpe~~--------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~-~~~-~~~r~ig~ 252 (290)
+||.+..-.. .+-+++.+.+.+..+ ++++... +-|+. .+.. ... .|.|++|+
T Consensus 73 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv~--SNPv~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 73 VVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTT--SNPVDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEEC--CSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEe--CChHHHHHHHHHHHcCCCHHHeeec
Confidence 9998864221 345566677777754 4444432 33333 2222 222 34588877
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.013 Score=55.35 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=65.5
Q ss_pred ccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH
Q psy17416 111 TEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 190 (290)
Q Consensus 111 ~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~ 190 (290)
+-.-|+++ .|.+|+.+|..+...|.+|.++|+++....++.. .|. . ..+++
T Consensus 257 GktVgIIG---~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~-----------~g~--------------~-~~~l~ 307 (479)
T 1v8b_A 257 GKIVVICG---YGDVGKGCASSMKGLGARVYITEIDPICAIQAVM-----------EGF--------------N-VVTLD 307 (479)
T ss_dssp TSEEEEEC---CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT-----------TTC--------------E-ECCHH
T ss_pred CCEEEEEe---eCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHH-----------cCC--------------E-ecCHH
Confidence 34455665 7999999999999999999999999976433322 111 1 24788
Q ss_pred hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC---cCHHHHhc
Q psy17416 191 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS---FLPSVLSE 241 (290)
Q Consensus 191 ~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~la~ 241 (290)
+++++||+|+.+. +...+ +-++..+.++++++|+..+++ +....+.+
T Consensus 308 ell~~aDiVi~~~-~t~~l---I~~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 308 EIVDKGDFFITCT-GNVDV---IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp HHTTTCSEEEECC-SSSSS---BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred HHHhcCCEEEECC-Chhhh---cCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 8899999999995 22211 113445568999998733332 34445555
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.024 Score=43.38 Aligned_cols=91 Identities=10% Similarity=0.049 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlVi 200 (290)
.|.+|..++..+...|++|.++|++++..+.+.+ .|.. .......-...+.++ +.++|+||
T Consensus 14 ~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----------~~~~-------~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 14 LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-----------YATH-------AVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp CSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT-----------TCSE-------EEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------hCCE-------EEEeCCCCHHHHHhcCCCCCCEEE
Confidence 5889999999999999999999999876543221 1110 000001001122222 57899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
.+++.+.+....+.. ..+.+.++.+++..+
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~ii~~~~ 105 (144)
T 2hmt_A 76 VAIGANIQASTLTTL-LLKELDIPNIWVKAQ 105 (144)
T ss_dssp ECCCSCHHHHHHHHH-HHHHTTCSEEEEECC
T ss_pred ECCCCchHHHHHHHH-HHHHcCCCeEEEEeC
Confidence 999976433223333 333345556665333
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.04 Score=52.16 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=57.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..+++.+...|.+|.++|++++.++.+.+ .|. . ..+++++++++|+||+
T Consensus 282 ~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~-----------~Ga--------------~-~~~l~e~l~~aDvVi~ 335 (494)
T 3ce6_A 282 YGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM-----------EGF--------------D-VVTVEEAIGDADIVVT 335 (494)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC--------------E-ECCHHHHGGGCSEEEE
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC--------------E-EecHHHHHhCCCEEEE
Confidence 6999999999999999999999999988766554 221 1 1345667889999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+++..--+. .+..+.++++++++.
T Consensus 336 atgt~~~i~----~~~l~~mk~ggilvn 359 (494)
T 3ce6_A 336 ATGNKDIIM----LEHIKAMKDHAILGN 359 (494)
T ss_dssp CSSSSCSBC----HHHHHHSCTTCEEEE
T ss_pred CCCCHHHHH----HHHHHhcCCCcEEEE
Confidence 987443222 234456788988863
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0066 Score=57.46 Aligned_cols=102 Identities=11% Similarity=0.041 Sum_probs=65.8
Q ss_pred CCcHHhhc---ccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh--HHHhcccC-CCCceeeeccCCCCC
Q psy17416 1 TPVLRECL---EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHST-HRSQFIVAHPVNPPY 74 (290)
Q Consensus 1 ~~~l~~~~---~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~--~~l~~~~~-~~~r~~g~hf~~P~~ 74 (290)
++|+++++ +++|+|+.|||....++. ++.++...+++++++.+.+++.+. .++.+.+. ..-+++++..+.++.
T Consensus 54 ~~~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~ 132 (482)
T 2pgd_A 54 AHSLEEMVSKLKKPRRIILLVKAGQAVDN-FIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGED 132 (482)
T ss_dssp CSSHHHHHHHBCSSCEEEECSCTTHHHHH-HHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHH
T ss_pred eCCHHHHHhhccCCCEEEEeCCChHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChh
Confidence 35777776 499999999999877764 667888888888888766555543 35555443 123445443332221
Q ss_pred C--CCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 75 F--IPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 75 ~--~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
. ... -++.+. +++.++.+..++..+|+.+
T Consensus 133 ~a~~g~-~i~~gg--~~e~~~~v~~ll~~~g~~v 163 (482)
T 2pgd_A 133 GARYGP-SLMPGG--NKEAWPHIKAIFQGIAAKV 163 (482)
T ss_dssp HHHHCC-EEEEEE--CTTTHHHHHHHHHHHSCBC
T ss_pred hhccCC-eEEeCC--CHHHHHHHHHHHHHhhhhc
Confidence 0 000 134443 4778899999999999865
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0087 Score=56.15 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=72.8
Q ss_pred CCcHHhhcccCcEEEEcccCChH--------HHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccCC--CCceeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH--RSQFIVA 67 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~--------~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~--~~r~~g~ 67 (290)
|+|+++++++||+||.|||...+ ...++++++.+.+++++++... |++++. +++..+.. +.+-.+.
T Consensus 69 t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgt~~~l~~~l~~~~~~~~~~~ 147 (450)
T 3gg2_A 69 GTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK-STVPVGSYRLIRKAIQEELDKREVLI 147 (450)
T ss_dssp ESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC-SCCCTTHHHHHHHHHHHHHHHTTCCC
T ss_pred ECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe-eeCCCcchHHHHHHHHHhccccCcCc
Confidence 46889999999999999998753 7788899999999999988654 466655 44433311 1111111
Q ss_pred c---cCCCCCCCCeee---------EeeCCCCCHHHHHHHHHHHHHhCC--ccEEEeccc
Q psy17416 68 H---PVNPPYFIPLVE---------IVPAAWTSERVITRTREIMTEIGM--KPVTLTTEI 113 (290)
Q Consensus 68 h---f~~P~~~~~lvE---------iv~~~~t~~~~~~~~~~~~~~lgk--~~v~v~~d~ 113 (290)
. .++|....+-.. |+.|. .+++..+.+..++..+++ .++.+ .+.
T Consensus 148 d~~v~~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~-~d~ 205 (450)
T 3gg2_A 148 DFDIASNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLF-MDI 205 (450)
T ss_dssp CEEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEE-ECH
T ss_pred ceeEEechhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEe-cCH
Confidence 1 245665444332 44342 468899999999999887 36655 443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.055 Score=48.41 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHcCc-------eeEEecCC----HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYDVL----SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d~~----~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|.+|..++..+...|+ +|.++|++ ++.++.-.. . + . .+. . .....++.++++.+
T Consensus 15 G~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~---d-l---~-~~~----~---~~~~~i~~~~~~~~ 79 (329)
T 1b8p_A 15 GQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMM---E-I---D-DCA----F---PLLAGMTAHADPMT 79 (329)
T ss_dssp SHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHH---H-H---H-TTT----C---TTEEEEEEESSHHH
T ss_pred ChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHH---H-H---h-hhc----c---cccCcEEEecCcHH
Confidence 8889999998888885 89999998 433321111 1 1 0 110 0 11245666788888
Q ss_pred hcccCcEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 192 CLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 192 ~l~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++++||+||.+..- |..+-+++.+.+.+.+++++++.
T Consensus 80 al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii 130 (329)
T 1b8p_A 80 AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVL 130 (329)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 99999999976531 22445667778888874565444
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.015 Score=54.99 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=66.9
Q ss_pred CCcHHhhccc---CcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh--HHHhcccC-CCCceeeeccCCCCC
Q psy17416 1 TPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--SVLSEHST-HRSQFIVAHPVNPPY 74 (290)
Q Consensus 1 ~~~l~~~~~~---~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~--~~l~~~~~-~~~r~~g~hf~~P~~ 74 (290)
++|+++++++ +|+|+-+||....++ +++.++...+++++++.+.+++.+. .++++.+. ..-+++++.....+.
T Consensus 66 ~~s~~e~v~~l~~aDvVil~Vp~~~~v~-~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~ 144 (480)
T 2zyd_A 66 YYTVKEFVESLETPRRILLMVKAGAGTD-AAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEE 144 (480)
T ss_dssp CSSHHHHHHTBCSSCEEEECSCSSSHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHH
T ss_pred eCCHHHHHhCCCCCCEEEEECCCHHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHh
Confidence 3678888776 999999999976665 5668898889888888866666543 35655553 223344332211110
Q ss_pred ---CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCc
Q psy17416 75 ---FIPLVEIVPAAWTSERVITRTREIMTEIGMK 105 (290)
Q Consensus 75 ---~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~ 105 (290)
.-+ -++.+. +++.++.+..++..+|..
T Consensus 145 ~a~~g~--~i~~gg--~~~~~~~v~~ll~~~g~~ 174 (480)
T 2zyd_A 145 GALKGP--SIMPGG--QKEAYELVAPILTKIAAV 174 (480)
T ss_dssp HHHHCC--EEEEES--CHHHHHHHHHHHHHHSCB
T ss_pred HHhcCC--eEEecC--CHHHHHHHHHHHHHHhcc
Confidence 012 255553 589999999999999986
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.059 Score=50.24 Aligned_cols=81 Identities=20% Similarity=0.145 Sum_probs=57.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|.++|+++.....+.. . + .. ..+++++++.+|+|+.
T Consensus 255 ~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~-----------~----G----------~~-vv~LeElL~~ADIVv~ 308 (464)
T 3n58_A 255 YGDVGKGSAQSLAGAGARVKVTEVDPICALQAAM-----------D----G----------FE-VVTLDDAASTADIVVT 308 (464)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------T----T----------CE-ECCHHHHGGGCSEEEE
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHh-----------c----C----------ce-eccHHHHHhhCCEEEE
Confidence 6899999999999999999999999975433322 1 1 11 2467888999999999
Q ss_pred ccccchHHHHHHH-HHHhhhCCCCcEEEeCCCCc
Q psy17416 202 SVPEILQIKHQVY-RAIDIFMSSNTILSSSTSSF 234 (290)
Q Consensus 202 avpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~ 234 (290)
+.. +. .++ ++..+.++++++++ |++..
T Consensus 309 atg-t~----~lI~~e~l~~MK~GAILI-NvGRg 336 (464)
T 3n58_A 309 TTG-NK----DVITIDHMRKMKDMCIVG-NIGHF 336 (464)
T ss_dssp CCS-SS----SSBCHHHHHHSCTTEEEE-ECSSS
T ss_pred CCC-Cc----cccCHHHHhcCCCCeEEE-EcCCC
Confidence 864 22 122 34445689999887 44433
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.026 Score=52.47 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|.++|+++.....+.. . + .. ..++++++++||+|+.
T Consensus 219 ~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~-----------~----G----------~~-~~sL~eal~~ADVVil 272 (436)
T 3h9u_A 219 YGDVGKGCAAALRGFGARVVVTEVDPINALQAAM-----------E----G----------YQ-VLLVEDVVEEAHIFVT 272 (436)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------T----T----------CE-ECCHHHHTTTCSEEEE
T ss_pred eCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHH-----------h----C----------Ce-ecCHHHHHhhCCEEEE
Confidence 7999999999999999999999999976544433 1 1 11 2478889999999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+....--+ -++..+.++++++|+
T Consensus 273 t~gt~~iI----~~e~l~~MK~gAIVI 295 (436)
T 3h9u_A 273 TTGNDDII----TSEHFPRMRDDAIVC 295 (436)
T ss_dssp CSSCSCSB----CTTTGGGCCTTEEEE
T ss_pred CCCCcCcc----CHHHHhhcCCCcEEE
Confidence 65421111 123455689999886
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.061 Score=46.97 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=77.5
Q ss_pred cccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhc---cCCCC-CcEEEeccCC
Q psy17416 181 GLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE---HSTHR-SQFIVAHPVN 256 (290)
Q Consensus 181 ~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~---~~~~~-~r~ig~Hf~~ 256 (290)
.++..++|-.++++++|++|.=+|-- ..-..+.+++.+.+++|+||+ ||=+++...+.. .+.+. -.+..+||-.
T Consensus 127 aGVkVtsDD~EAvk~AEi~IlftPfG-~~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaa 204 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGC 204 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred cCcEeecchHHHhcCCCEEEEecCCC-CCcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 35556677677899999999999852 224578899999999999985 666666654443 34544 4688899876
Q ss_pred CCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 257 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 257 p~~~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
-|-...- ........++|.++++.++.+..||+
T Consensus 205 VPgt~Gq-~~~g~~yAtEEqIeklveLaksa~k~ 237 (358)
T 2b0j_A 205 VPEMKGQ-VYIAEGYASEEAVNKLYEIGKIARGK 237 (358)
T ss_dssp CTTTCCC-EEEEESSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCc-cccccccCCHHHHHHHHHHHHHhCCC
Confidence 5543222 23455677999999999999999874
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.008 Score=54.15 Aligned_cols=94 Identities=26% Similarity=0.214 Sum_probs=65.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|..||+.+.... .+ . ... ..++++.++.||+|+.
T Consensus 149 ~G~IG~~va~~~~~fg~~v~~~d~~~~~~~--~~-----------~--------------~~~-~~~l~ell~~sDivsl 200 (334)
T 3kb6_A 149 TGRIGSRVAMYGLAFGMKVLCYDVVKREDL--KE-----------K--------------GCV-YTSLDELLKESDVISL 200 (334)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HH-----------T--------------TCE-ECCHHHHHHHCSEEEE
T ss_pred cchHHHHHHHhhcccCceeeecCCccchhh--hh-----------c--------------Cce-ecCHHHHHhhCCEEEE
Confidence 689999999999999999999998653211 11 0 111 3578889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC-C--cCHHHHhccCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS-S--FLPSVLSEHST 244 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~la~~~~ 244 (290)
++|-..+-+.-+=++....++++++++ |++ + +.-..+...+.
T Consensus 201 h~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~ 245 (334)
T 3kb6_A 201 HVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ 245 (334)
T ss_dssp CCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred cCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence 999777654434455666899999987 444 2 22235555543
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.1 Score=48.26 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=60.4
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc-----------
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE----------- 205 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe----------- 205 (290)
+.++.++|.+++.++.+.. +...+ ... . .+++.++|+.+++++||+||.++--
T Consensus 31 ~~el~L~Di~~~~~~~~~~-~~~~~---~~~-----------~-~~v~~t~d~~~al~~AD~Viitagvg~~~~~~rd~~ 94 (417)
T 1up7_A 31 IDEVIFYDIDEEKQKIVVD-FVKRL---VKD-----------R-FKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEG 94 (417)
T ss_dssp CCEEEEECSCHHHHHHHHH-HHHHH---HTT-----------S-SEEEECSSHHHHHTTCSEEEECCCTTHHHHHHHHHH
T ss_pred cCEEEEEeCCHHHHHHHHH-HHHHH---hhC-----------C-eEEEEeCCHHHHhCCCCEEEEcCCCCCCCccchhhh
Confidence 5689999999988765332 22211 100 0 3566678887789999999999821
Q ss_pred -----------------------chHHHHHHHHHHhhhCCCCcEEE--eCCCCcCHHHHhccCCCCCcEEEec
Q psy17416 206 -----------------------ILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQFIVAH 253 (290)
Q Consensus 206 -----------------------~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~~~la~~~~~~~r~ig~H 253 (290)
+..+-+++.+++.+++ ++++. ||-..+ +++.......+.|++|+-
T Consensus 95 i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvdi-~t~a~~k~~p~~rviG~c 164 (417)
T 1up7_A 95 IPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSGH-ITEFVRNYLEYEKFIGLC 164 (417)
T ss_dssp GGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHHH-HHHHHHHTTCCSSEEECC
T ss_pred hhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHHH-HHHHHHHhCCCCCEEEeC
Confidence 1134567778899988 66655 444333 334433333234888874
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.048 Score=47.59 Aligned_cols=110 Identities=12% Similarity=0.146 Sum_probs=80.4
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcc---cCCCCceeeeccCCCCC--CC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH---STHRSQFIVAHPVNPPY--FI 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~---~~~~~r~~g~hf~~P~~--~~ 76 (290)
+|=.||.+++|++|==.|- -..--++.+++-...+.++|++ ||=++|...|... ++|.+ +|+--|+|+- -|
T Consensus 133 sDD~EAvk~AEi~IlftPf-G~~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~D--vgIsS~HPaaVPgt 208 (358)
T 2b0j_A 133 SDDREAVEGADIVITWLPK-GNKQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGRED--LNITSYHPGCVPEM 208 (358)
T ss_dssp SCHHHHHTTCSEEEECCTT-CTTHHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTT--SEEEECBCSSCTTT
T ss_pred cchHHHhcCCCEEEEecCC-CCCcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCccc--CCeeccCCCCCCCC
Confidence 4555699999999987776 4456789999999999999996 4556677655543 44332 6655555552 24
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
.--........+++.++...++++..||.+..+..+.-+
T Consensus 209 ~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~S 247 (358)
T 2b0j_A 209 KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIG 247 (358)
T ss_dssp CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHH
T ss_pred CCccccccccCCHHHHHHHHHHHHHhCCCeEecchhhcc
Confidence 444445666779999999999999999999998765433
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.035 Score=52.44 Aligned_cols=143 Identities=11% Similarity=0.091 Sum_probs=83.4
Q ss_pred CCcHHhhcccCcEEEEcccCChH----------HHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcc-c-CCCCcee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQ----------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEH-S-THRSQFI 65 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~----------~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~-~-~~~~r~~ 65 (290)
|+| .+++++||+||.|||.+.+ --.+..+.+.+.+++++++ .+.|++++. +++.. . .....-.
T Consensus 93 ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iV-V~~STv~pgtt~~v~~~ile~~~g~~~ 170 (478)
T 3g79_A 93 TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLV-VLESTITPGTTEGMAKQILEEESGLKA 170 (478)
T ss_dssp ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEE-EECSCCCTTTTTTHHHHHHHHHHCCCB
T ss_pred eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEE-EEeCCCChHHHHHHHHHHHHHhcCCCc
Confidence 356 6789999999999998742 2356678888889999877 477788876 33321 1 0000000
Q ss_pred eecc---CCCCCCCCee---------eEeeCCCCCHHHHHHHHHHHHHh-CCccEEEecccee-----eEEecccc---h
Q psy17416 66 VAHP---VNPPYFIPLV---------EIVPAAWTSERVITRTREIMTEI-GMKPVTLTTEIRG-----FALNRIHG---L 124 (290)
Q Consensus 66 g~hf---~~P~~~~~lv---------Eiv~~~~t~~~~~~~~~~~~~~l-gk~~v~v~~d~~g-----f~~nri~G---~ 124 (290)
|..| ++|....+-- =|+.| .+++..+.+..+++.+ ++.++.+ .+... ++-|-+.+ .
T Consensus 171 ~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~-~~~~~aE~~Kl~~N~~~a~~Ia 247 (478)
T 3g79_A 171 GEDFALAHAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIP-MSATAAEVTKTAENTFRDLQIA 247 (478)
T ss_dssp TTTBEEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEE-EEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEeCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEe-CCHHHHHHHHHHHHHHHHHHHH
Confidence 1111 4565433211 25544 4677779999999999 7877776 34221 11222111 2
Q ss_pred hHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 125 IGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
...+++..+.+.| .|.+++-+++.
T Consensus 248 ~~nE~~~l~e~~G-------iD~~~v~~~~~ 271 (478)
T 3g79_A 248 AINQLALYCEAMG-------INVYDVRTGVD 271 (478)
T ss_dssp HHHHHHHHHHHTT-------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHC
Confidence 2345555555666 56666655554
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.028 Score=48.94 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=59.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-++++ +|.||+.++..+...|++|.+++++++..++..+ . . ++...+++.+.+
T Consensus 132 v~iiG---aG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~-----------~------~-------g~~~~~~~~~~~ 184 (275)
T 2hk9_A 132 ILVLG---AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQ-----------K------F-------PLEVVNSPEEVI 184 (275)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTT-----------T------S-------CEEECSCGGGTG
T ss_pred EEEEC---chHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH-----------H------c-------CCeeehhHHhhh
Confidence 44555 6899999999999999999999999876543322 0 0 112234677778
Q ss_pred ccCcEEEEccccchHHH-HHHHHHHhhhCCCCcEEEeCCC
Q psy17416 194 EDAIFIQESVPEILQIK-HQVYRAIDIFMSSNTILSSSTS 232 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k-~~~~~~l~~~~~~~~ii~s~ts 232 (290)
+++|+||.|+|....-. ...+. .+.+++++++..-..
T Consensus 185 ~~aDiVi~atp~~~~~~~~~~i~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 185 DKVQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp GGCSEEEECSSTTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred cCCCEEEEeCCCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence 89999999999765210 00111 245778888775444
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.057 Score=47.64 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=57.7
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|+.+...|. ++.++|.+++...--...+.+.. .. ......+..+.|++ ++++||+|
T Consensus 8 aG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~------~~-------~~~~~~i~~~~d~~-~~~~aDvV 73 (294)
T 2x0j_A 8 AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA------AG-------IDKYPKIVGGADYS-LLKGSEII 73 (294)
T ss_dssp CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH------GG-------GTCCCEEEEESCGG-GGTTCSEE
T ss_pred cCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhccc------cc-------CCCCCeEecCCCHH-HhCCCCEE
Confidence 58899999998887775 79999999865432222222110 00 00112344566776 58999999
Q ss_pred EEccc--------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVP--------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.- .|..+-+++..++.++++...++.
T Consensus 74 vitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlv 116 (294)
T 2x0j_A 74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116 (294)
T ss_dssp EECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEE
T ss_pred EEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 97652 134455667778888876655444
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.051 Score=50.41 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=55.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|.++|+++.....+.. .|. . ..+++++++++|+|+.
T Consensus 228 ~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~-----------~G~--------------~-v~~Leeal~~ADIVi~ 281 (435)
T 3gvp_A 228 YGEVGKGCCAALKAMGSIVYVTEIDPICALQACM-----------DGF--------------R-LVKLNEVIRQVDIVIT 281 (435)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC--------------E-ECCHHHHTTTCSEEEE
T ss_pred eCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHH-----------cCC--------------E-eccHHHHHhcCCEEEE
Confidence 7999999999999999999999999976544332 111 1 2467889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
| +++..+ +-++.-+.++++++++.
T Consensus 282 a-tgt~~l---I~~e~l~~MK~gailIN 305 (435)
T 3gvp_A 282 C-TGNKNV---VTREHLDRMKNSCIVCN 305 (435)
T ss_dssp C-SSCSCS---BCHHHHHHSCTTEEEEE
T ss_pred C-CCCccc---CCHHHHHhcCCCcEEEE
Confidence 7 543321 11234446889998863
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.064 Score=45.67 Aligned_cols=99 Identities=8% Similarity=0.134 Sum_probs=63.6
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHH-HhhcCCCcEEeecCCCC----------------Ch-HHHhcccCCCCc
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAI-DIFMSSNTILSSSTSSF----------------LP-SVLSEHSTHRSQ 63 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~-~~~~~~~~i~~snts~~----------------~~-~~l~~~~~~~~r 63 (290)
+|+++++++||+||-|+|.+... +++.++ .... +++++.+.+..+ .+ ..+++.+.. .+
T Consensus 82 ~~~~e~~~~aDvVilavp~~~~~--~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~ 157 (245)
T 3dtt_A 82 AAFADVAAGAELVVNATEGASSI--AALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AK 157 (245)
T ss_dssp EEHHHHHHHCSEEEECSCGGGHH--HHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SE
T ss_pred cCHHHHHhcCCEEEEccCcHHHH--HHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-Ce
Confidence 46788899999999999987554 455666 4555 677776655321 23 345555543 55
Q ss_pred ee-eeccCCCCCCC---------CeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 64 FI-VAHPVNPPYFI---------PLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 64 ~~-g~hf~~P~~~~---------~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
++ |++|. |++.. ++.-++.| .+++.++.+..++..+|+.++
T Consensus 158 vv~~~~~~-~a~v~~~~~~a~~g~~~~~v~g--~d~~~~~~v~~ll~~~g~~~~ 208 (245)
T 3dtt_A 158 VVKTLNTM-NASLMVDPGRAAGGDHSVFVSG--NDAAAKAEVATLLKSLGHQDV 208 (245)
T ss_dssp EEECSTTS-CHHHHHCGGGTGGGCCCEEEEC--SCHHHHHHHHHHHHHTTCCCE
T ss_pred EEEeeccc-CHHHhcCccccCCCCeeEEEEC--CCHHHHHHHHHHHHHcCCCce
Confidence 55 56553 22211 22223333 378999999999999998764
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.016 Score=50.22 Aligned_cols=107 Identities=6% Similarity=0.061 Sum_probs=72.2
Q ss_pred HhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH-HHhcccCCCCcee-eeccC-----CCCCCCC
Q psy17416 5 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTHRSQFI-VAHPV-----NPPYFIP 77 (290)
Q Consensus 5 ~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~-~l~~~~~~~~r~~-g~hf~-----~P~~~~~ 77 (290)
.++++++|+||-|++... + .++++++...+++++++.+.+.++... .+++.. |+ ++ |.+++ .| .
T Consensus 58 ~~~~~~~d~vi~~v~~~~-~-~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~--~~-~~~g~~~~~~~~~~p-~--- 128 (291)
T 1ks9_A 58 PDFLATSDLLLVTLKAWQ-V-SDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQ--QP-LLMGTTTHAARRDGN-V--- 128 (291)
T ss_dssp HHHHHTCSEEEECSCGGG-H-HHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCC--SC-EEEEEECCEEEEETT-E---
T ss_pred ccccCCCCEEEEEecHHh-H-HHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhc--CC-eEEEEEeEccEEcCC-E---
Confidence 457789999999999885 4 788999999999999888888787765 555555 33 54 55542 33 1
Q ss_pred eeeEeeC-----C-CCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecc
Q psy17416 78 LVEIVPA-----A-WTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 121 (290)
Q Consensus 78 lvEiv~~-----~-~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri 121 (290)
..++-.| . ..+++.++.+.+++..+|...... .|..+...+.+
T Consensus 129 ~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~~~~~~-~~~~~~~~~Kl 177 (291)
T 1ks9_A 129 IIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWH-NNIRAELWRKL 177 (291)
T ss_dssp EEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEEC-TTHHHHHHHHH
T ss_pred EEEecccceEEccCCCCcchHHHHHHHHHhcCCCCeec-HHHHHHHHHHH
Confidence 2232222 1 234566788889999999866654 56555544443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.11 Score=47.40 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=58.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC--C---------C---CCChhhhhcccccCC
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL--K---------G---SLSPEEQFGLISGTP 187 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~--~---------~---~~~~~~~~~~i~~~~ 187 (290)
+|.+|..++..+...|.+|+++|++++.++++.+ .|.. . + .+..... .....
T Consensus 192 ~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-----------lGa~~~~l~~~~~~~~gya~~~~~~~~---~~~~~ 257 (381)
T 3p2y_A 192 VGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-----------VGAQWLDLGIDAAGEGGYARELSEAER---AQQQQ 257 (381)
T ss_dssp CSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-----------TTCEECCCC-------------CHHHH---HHHHH
T ss_pred chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCCeEEeccccccccccchhhhhHHHH---hhhHH
Confidence 6899999999999999999999999988776654 1110 0 0 0000000 00124
Q ss_pred chHhhcccCcEEEEcc--ccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 188 VLRECLEDAIFIQESV--PEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 188 ~l~~~l~~aDlVieav--pe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
++++.++++|+||.++ |.... ..-+-++..+.++++++|+
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~a-p~Lvt~emv~~MkpGsVIV 299 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPA-PRLVTAAAATGMQPGSVVV 299 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCC-CCCBCHHHHHTSCTTCEEE
T ss_pred HHHHHHhcCCEEEECCCCCCccc-ceeecHHHHhcCCCCcEEE
Confidence 6778899999999986 42110 0011245556788999887
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.034 Score=52.04 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCcHHhhcccCcEEEEcccCChH---------HHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccC--CCCceee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQ---------IKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHST--HRSQFIV 66 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~---------~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~--~~~r~~g 66 (290)
|+|+++++++||+||-|||-..+ --.++++.+.+.+++++++.. .|++++. +++..+. .+. ..
T Consensus 75 ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~-~STv~pgtt~~l~~~l~e~~~~--~d 151 (446)
T 4a7p_A 75 TTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVT-KSTVPVGTGDEVERIIAEVAPN--SG 151 (446)
T ss_dssp ESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEE-CSCCCTTHHHHHHHHHHHHSTT--SC
T ss_pred ECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCCCchHHHHHHHHHHHhCCC--CC
Confidence 57899999999999999987763 467788999999999998876 4577765 3433221 111 11
Q ss_pred ecc-CCCCCCCCee---------eEeeCCCCCHHHHHHHHHHHHHhCCc---cEEE
Q psy17416 67 AHP-VNPPYFIPLV---------EIVPAAWTSERVITRTREIMTEIGMK---PVTL 109 (290)
Q Consensus 67 ~hf-~~P~~~~~lv---------Eiv~~~~t~~~~~~~~~~~~~~lgk~---~v~v 109 (290)
.+. ++|....+-- -|+.| .++++..+.+..++..+++. ++.+
T Consensus 152 ~~v~~~Pe~a~eG~a~~d~~~p~~ivvG-~~~~~~~~~~~~ly~~~~~~~~~~~~~ 206 (446)
T 4a7p_A 152 AKVVSNPEFLREGAAIEDFKRPDRVVVG-TEDEFARQVMREIYRPLSLNQSAPVLF 206 (446)
T ss_dssp CEEEECCCCCCTTSHHHHHHSCSCEEEE-CSCHHHHHHHHHHHCSCC-----CEEE
T ss_pred ceEEeCcccccccchhhhccCCCEEEEe-CCcHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 111 3454433221 23333 34688899999999888874 4655
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.031 Score=52.78 Aligned_cols=100 Identities=10% Similarity=0.040 Sum_probs=64.7
Q ss_pred CCcHHhhcc---cCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC--hHHHhcccCC-CCceeeeccCCCCC
Q psy17416 1 TPVLRECLE---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPVNPPY 74 (290)
Q Consensus 1 ~~~l~~~~~---~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~--~~~l~~~~~~-~~r~~g~hf~~P~~ 74 (290)
++|++++++ ++|+|+.|||....++. +++++...+++++++.+.+.+.+ ..++++.+.. .-+++++....++.
T Consensus 56 ~~~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~ 134 (478)
T 1pgj_A 56 FETMEAFAASLKKPRKALILVQAGAATDS-TIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEE 134 (478)
T ss_dssp CSCHHHHHHHBCSSCEEEECCCCSHHHHH-HHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHH
T ss_pred ECCHHHHHhcccCCCEEEEecCChHHHHH-HHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHH
Confidence 357777766 59999999999876654 56888888888888776554443 3456655532 23344433222111
Q ss_pred ---CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCc
Q psy17416 75 ---FIPLVEIVPAAWTSERVITRTREIMTEIGMK 105 (290)
Q Consensus 75 ---~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~ 105 (290)
.-+ -++.+. +++.++.+..++..+|..
T Consensus 135 ~a~~g~--~i~~gg--~~~~~~~v~~ll~~~g~~ 164 (478)
T 1pgj_A 135 GARKGP--AFFPGG--TLSVWEEIRPIVEAAAAK 164 (478)
T ss_dssp HHHHCC--EEEEEE--CHHHHHHHHHHHHHHSCB
T ss_pred HHhcCC--eEeccC--CHHHHHHHHHHHHHhccc
Confidence 001 134443 688999999999999986
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.0074 Score=54.27 Aligned_cols=85 Identities=7% Similarity=-0.078 Sum_probs=55.3
Q ss_pred CcHHhhcccCcEEE--------------EcccCChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccCC-CCce
Q psy17416 2 PVLRECLEDAIFIQ--------------ESVPEILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHSTH-RSQF 64 (290)
Q Consensus 2 ~~l~~~~~~~d~vi--------------ea~~e~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~~-~~r~ 64 (290)
+|++ +++|||+|| |.+.+|.++++++.+++.+.+ |++++ .||-.+.-..-+...... |+|+
T Consensus 82 ~d~~-~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi~t~~~~k~sg~p~~rV 159 (330)
T 3ldh_A 82 KDYS-VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTDKNKQDWKLSGLPMHRI 159 (330)
T ss_dssp SSSC-SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHHCCCGGGE
T ss_pred CCHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHHHHHHHHHHhCCCHHHe
Confidence 5676 499999999 457899999999999999995 66643 455433222222222222 3555
Q ss_pred eeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 65 ~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
+|+ .|.-+.......+++.+|-.|
T Consensus 160 iG~------------------gt~LDs~R~~~~lA~~lgv~~ 183 (330)
T 3ldh_A 160 IGS------------------GCNLDSARFRYLMGERLGVHS 183 (330)
T ss_dssp ECC------------------TTHHHHHHHHHHHHHHHTSCT
T ss_pred ecc------------------cCchhHHHHHHHHHHHhCCCH
Confidence 555 355556666667777788644
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.15 Score=42.40 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCC--CCCCCChhhhhcccccCCchHhh-cccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGC--LKGSLSPEEQFGLISGTPVLREC-LEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~--~~~~~~~~~~~~~i~~~~~l~~~-l~~aDl 198 (290)
+|.+|..++..+...|++|+++|++++.+++..+. .|. ..+. .+-...+.++ +.++|+
T Consensus 8 ~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~----------~~~~~i~gd---------~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 8 GETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK----------LKATIIHGD---------GSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH----------SSSEEEESC---------TTSHHHHHHHTCCTTCE
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----------cCCeEEEcC---------CCCHHHHHhcCcccCCE
Confidence 68999999999999999999999999887654321 111 1111 0001123333 789999
Q ss_pred EEEccccchHHHHHHHHHHhhh-CCCCcEEE
Q psy17416 199 IQESVPEILQIKHQVYRAIDIF-MSSNTILS 228 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~-~~~~~ii~ 228 (290)
||-+++.+. .......+.+. .+...+++
T Consensus 69 vi~~~~~d~--~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 69 VVILTPRDE--VNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp EEECCSCHH--HHHHHHHHHHHTSCCCEEEE
T ss_pred EEEecCCcH--HHHHHHHHHHHHcCCCeEEE
Confidence 999999775 33444454444 45555655
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.027 Score=53.06 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=46.4
Q ss_pred CCcHHhhcccCcEEEEcccCC----------------------------------hHHHHHHHHHHHhhcCCCcEEeecC
Q psy17416 1 TPVLRECLEDAIFIQESVPEI----------------------------------LQIKHQVYRAIDIFMSSNTILSSST 46 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~----------------------------------~~~K~~~~~~~~~~~~~~~i~~snt 46 (290)
|+|+++|++|||+|+-+++=. ..+=+++.+++.+.| ||+++. |-
T Consensus 93 t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii-~~ 170 (472)
T 1u8x_X 93 TTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWML-NY 170 (472)
T ss_dssp ESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEE-EC
T ss_pred ECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEE-Ee
Confidence 468999999999999999541 134468889999998 677666 55
Q ss_pred CCCChHHHhcccC---CCCceeeec
Q psy17416 47 SSFLPSVLSEHST---HRSQFIVAH 68 (290)
Q Consensus 47 s~~~~~~l~~~~~---~~~r~~g~h 68 (290)
|| |+.-++..+. .+.|++|+-
T Consensus 171 TN-Pvdi~T~~~~k~~p~~rViG~c 194 (472)
T 1u8x_X 171 SN-PAAIVAEATRRLRPNSKILNIC 194 (472)
T ss_dssp CS-CHHHHHHHHHHHSTTCCEEECC
T ss_pred CC-cHHHHHHHHHHhCCCCCEEEeC
Confidence 44 7776665552 234888873
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.03 Score=51.61 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=58.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC--CCCC----C---hhhhhcccc------cC
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL--KGSL----S---PEEQFGLIS------GT 186 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~--~~~~----~---~~~~~~~i~------~~ 186 (290)
+|.+|..++..+...|.+|+++|++++.++.+.+ .|.. .-.. . .......++ -.
T Consensus 198 ~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-----------~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~ 266 (405)
T 4dio_A 198 AGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS-----------LGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA 266 (405)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH-----------TTCEECCCCC-----------------CHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------cCCceeecccccccccccccchhhhcchhhhhhhH
Confidence 6999999999999999999999999988776554 1110 0000 0 000000000 01
Q ss_pred CchHhhcccCcEEEEcc--ccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 187 PVLRECLEDAIFIQESV--PEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 187 ~~l~~~l~~aDlVieav--pe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.++++.++++|+||.++ |.... ..-+-++..+.++++++|+
T Consensus 267 ~~l~e~l~~aDVVI~tvlipg~~a-p~Lvt~emv~~Mk~GsVIV 309 (405)
T 4dio_A 267 ALVAEHIAKQDIVITTALIPGRPA-PRLVTREMLDSMKPGSVVV 309 (405)
T ss_dssp HHHHHHHHTCSEEEECCCCSSSCC-CCCBCHHHHTTSCTTCEEE
T ss_pred hHHHHHhcCCCEEEECCcCCCCCC-CEEecHHHHhcCCCCCEEE
Confidence 36778899999999995 43111 0011245666789999887
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.034 Score=50.62 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=55.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|..++..+...|.+|.++|++++.++.+.+. .|.. . .....-..++++.++++|+||.
T Consensus 174 aG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~----------~g~~---~-----~~~~~~~~~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 174 GGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV----------FGGR---V-----ITLTATEANIKKSVQHADLLIG 235 (369)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTS---E-----EEEECCHHHHHHHHHHCSEEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----------cCce---E-----EEecCCHHHHHHHHhCCCEEEE
Confidence 48999999999999999999999999877654331 1110 0 0000112345667789999999
Q ss_pred ccccchH-HHHHHHHHHhhhCCCCcEEE
Q psy17416 202 SVPEILQ-IKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 202 avpe~~~-~k~~~~~~l~~~~~~~~ii~ 228 (290)
|++-... ...-+.++..+.++++.+|+
T Consensus 236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV 263 (369)
T 2eez_A 236 AVLVPGAKAPKLVTRDMLSLMKEGAVIV 263 (369)
T ss_dssp CCC-------CCSCHHHHTTSCTTCEEE
T ss_pred CCCCCccccchhHHHHHHHhhcCCCEEE
Confidence 9984421 11112345556677877765
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.092 Score=40.81 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=54.3
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEc
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQES 202 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlViea 202 (290)
|.||..++..+.+.|++|..++.+.+.+ .++....++.+....+|+++.+
T Consensus 27 g~~G~~~~~~L~~~G~~V~~vnp~~~~i------------------------------~G~~~~~s~~el~~~vDlvii~ 76 (138)
T 1y81_A 27 AKYGNIILKDLLSKGFEVLPVNPNYDEI------------------------------EGLKCYRSVRELPKDVDVIVFV 76 (138)
T ss_dssp TSHHHHHHHHHHHTTCEEEEECTTCSEE------------------------------TTEECBSSGGGSCTTCCEEEEC
T ss_pred CCHHHHHHHHHHHCCCEEEEeCCCCCeE------------------------------CCeeecCCHHHhCCCCCEEEEE
Confidence 8899999999999999855554432100 1234566777777789999999
Q ss_pred cccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhc
Q psy17416 203 VPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 241 (290)
Q Consensus 203 vpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~ 241 (290)
+|. +.-.+++.++.+ ...++++. .+++.. .++.+
T Consensus 77 vp~--~~v~~v~~~~~~-~g~~~i~~-~~~~~~-~~l~~ 110 (138)
T 1y81_A 77 VPP--KVGLQVAKEAVE-AGFKKLWF-QPGAES-EEIRR 110 (138)
T ss_dssp SCH--HHHHHHHHHHHH-TTCCEEEE-CTTSCC-HHHHH
T ss_pred eCH--HHHHHHHHHHHH-cCCCEEEE-cCccHH-HHHHH
Confidence 994 445677776665 45566554 344443 34443
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.064 Score=50.23 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=46.3
Q ss_pred CCcHHhhcccCcEEEEcccCC----------------------------------hHHHHHHHHHHHhhcCCCcEEeecC
Q psy17416 1 TPVLRECLEDAIFIQESVPEI----------------------------------LQIKHQVYRAIDIFMSSNTILSSST 46 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~----------------------------------~~~K~~~~~~~~~~~~~~~i~~snt 46 (290)
|+|+++|++|||+|+-+++=. +.+=+++.+++.+.| ||+++. |-
T Consensus 74 t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii-~~ 151 (450)
T 1s6y_A 74 TLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLI-NF 151 (450)
T ss_dssp ESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEE-EC
T ss_pred eCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEE-Ee
Confidence 478989999999999998821 234568889999998 667665 55
Q ss_pred CCCChHHHhcccC--CCC-ceeeec
Q psy17416 47 SSFLPSVLSEHST--HRS-QFIVAH 68 (290)
Q Consensus 47 s~~~~~~l~~~~~--~~~-r~~g~h 68 (290)
|| |+.-++..+. .|. |++|+-
T Consensus 152 tN-PvdivT~a~~k~~p~~rViG~c 175 (450)
T 1s6y_A 152 TN-PAGMVTEAVLRYTKQEKVVGLC 175 (450)
T ss_dssp SS-SHHHHHHHHHHHCCCCCEEECC
T ss_pred CC-cHHHHHHHHHHhCCCCCEEEeC
Confidence 44 7776665552 243 777763
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.16 Score=47.88 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=37.9
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
+.++.++|.+++.++......++..... | ..-+++.++|..+++++||+||.++
T Consensus 31 ~~ei~L~Di~~~rl~~~~~~~~~~~~~~---~----------~~~~i~~t~d~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 31 DTHIYLMDVHERRLNASYILARKYVEEL---N----------SPVKVVKTESLDEAIEGADFIINTA 84 (477)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHHHHH---T----------CCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHc---C----------CCeEEEEeCCHHHHhCCCCEEEECc
Confidence 3579999999998766544444433221 1 1135677899999999999999886
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.13 Score=45.59 Aligned_cols=82 Identities=12% Similarity=0.032 Sum_probs=57.7
Q ss_pred CCcHHhhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCcE--EeecCCCCChHHHhccc-----C
Q psy17416 1 TPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTI--LSSSTSSFLPSVLSEHS-----T 59 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~i--~~snts~~~~~~l~~~~-----~ 59 (290)
|+|+++ +++||+||.|++= |..+.+++.+.+.+.+ |+++ +.|| |+..++..+ -
T Consensus 61 t~d~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN----P~~~~~~~~~~~~~~ 134 (310)
T 1guz_A 61 SNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN----PLDIMTHVAWVRSGL 134 (310)
T ss_dssp ESCGGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS----SHHHHHHHHHHHHCS
T ss_pred CCCHHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC----chHHHHHHHHHhcCC
Confidence 367765 9999999999952 1366789999999996 5663 3444 665443322 2
Q ss_pred CCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 60 HRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 60 ~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
.|+|++|+ .|.-+.......+++.+|..|
T Consensus 135 ~~~rviG~------------------gt~ld~~r~~~~la~~l~v~~ 163 (310)
T 1guz_A 135 PKERVIGM------------------AGVLDAARFRSFIAMELGVSM 163 (310)
T ss_dssp CGGGEEEE------------------CHHHHHHHHHHHHHHHHTCCG
T ss_pred ChHHEEEC------------------CCchHHHHHHHHHHHHhCCCH
Confidence 36788888 466677777777888898755
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.47 Score=42.73 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=58.8
Q ss_pred cchhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
+|.+|..++..++...+ ++.++|.++.. .. .+.+.-.+.. . .......+..+++..++++
T Consensus 33 aG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~-~~-~~Gva~DL~~--------~---~~~~~~~~~~~~~~~~a~~ 99 (345)
T 4h7p_A 33 AGQIGYALVPLIARGALLGPTTPVELRLLDIEPAL-KA-LAGVEAELED--------C---AFPLLDKVVVTADPRVAFD 99 (345)
T ss_dssp TSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH-HH-HHHHHHHHHH--------T---TCTTEEEEEEESCHHHHTT
T ss_pred CcHHHHHHHHHHHhccccCCCCccEEEEECCCCcc-cc-chhhhhhhhh--------c---CccCCCcEEEcCChHHHhC
Confidence 38899999998887653 78999987532 11 1111111110 0 1112345556778888899
Q ss_pred cCcEEEEcc--c------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 195 DAIFIQESV--P------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 195 ~aDlVieav--p------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+||+||.+- | .|..+-+++.+.+.+++++++++.
T Consensus 100 ~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vl 147 (345)
T 4h7p_A 100 GVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVV 147 (345)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEE
Confidence 999999764 2 234455666677888888888654
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.065 Score=50.55 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=79.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhc---ccCCCCceeeeccCCCCCC---
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE---HSTHRSQFIVAHPVNPPYF--- 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~---~~~~~~r~~g~hf~~P~~~--- 75 (290)
.+++|++++||+|+=++|-... .+++.++...++++++| |-.+++++..+.+ ..+..-+++-+|+-.|.+.
T Consensus 113 ~s~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~ 189 (525)
T 3fr7_A 113 GDIWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRR 189 (525)
T ss_dssp EEHHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHH
T ss_pred CCHHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHH
Confidence 4789999999999999998654 36899999999999996 8888999988875 3333347999999999884
Q ss_pred ------------CC-eeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 76 ------------IP-LVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 76 ------------~~-lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
++ ++ ..+...+.+.++.+.+++..+|...
T Consensus 190 ~y~~G~~~~g~Gv~~li--Av~qd~tgea~e~alala~aiG~~~ 231 (525)
T 3fr7_A 190 LYVQGKEINGAGINSSF--AVHQDVDGRATDVALGWSVALGSPF 231 (525)
T ss_dssp HHHHHTTSTTCSCCEEE--EEEECSSSCHHHHHHHHHHHTTCSE
T ss_pred HHhcccccccCCccEEE--EcCCCCCHHHHHHHHHHHHHCCCCe
Confidence 45 33 2334566788999999999999964
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.012 Score=53.18 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=40.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHH----HHhhcCC-CcEEeecCCCCChH
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRA----IDIFMSS-NTILSSSTSSFLPS 52 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~----~~~~~~~-~~i~~snts~~~~~ 52 (290)
+|++++++++|+||.|++. ....+++.+ +...+++ ++++.+.+.++++.
T Consensus 77 ~~~~~~~~~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~ 130 (366)
T 1evy_A 77 SDVEKAYNGAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS 130 (366)
T ss_dssp SCHHHHHTTCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTT
T ss_pred CCHHHHHcCCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCc
Confidence 5788889999999999996 567788888 8888888 88888887777664
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.03 Score=50.10 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=56.8
Q ss_pred CcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcccCC-CCce
Q psy17416 2 PVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHSTH-RSQF 64 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~~~~-~~r~ 64 (290)
+| .+++++||+||-++ ..|..+-+++.+++.+.+ |++++ .||..+....-+...... |+|+
T Consensus 66 ~d-~~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~p~~rv 143 (321)
T 3p7m_A 66 ND-YKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGVPDNKI 143 (321)
T ss_dssp SC-GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGE
T ss_pred CC-HHHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCCCHHHE
Confidence 34 46999999999985 336788899999999998 67654 455444333333333344 3788
Q ss_pred eeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 65 ~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+|+. |.-+.......+++.+|..|-.+
T Consensus 144 iG~~------------------~~LD~~R~~~~la~~l~v~~~~v 170 (321)
T 3p7m_A 144 VGMA------------------GVLDSARFRTFLADELNVSVQQV 170 (321)
T ss_dssp EEEC------------------HHHHHHHHHHHHHHHHTCCGGGE
T ss_pred Eeec------------------cchHHHHHHHHHHHHhCcCHHHc
Confidence 8876 33334445566777788655333
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.1 Score=46.38 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=56.5
Q ss_pred eeeEEecccchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-++++ .|.+++..+..+... ..+|.+||++ ..++..+.+++.+ |. .+... ++++
T Consensus 124 v~iIG---aG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g~------------~~~~~-~~~e 179 (313)
T 3hdj_A 124 LGLFG---AGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------GV------------PARMA-APAD 179 (313)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------TS------------CEEEC-CHHH
T ss_pred EEEEC---ccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------CC------------eEEEe-CHHH
Confidence 35565 788999888877653 4589999999 3333333222211 11 12234 8888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
++++||+||.|+|... .++. .+.++++++|..-
T Consensus 180 av~~aDIVi~aT~s~~----pvl~--~~~l~~G~~V~~v 212 (313)
T 3hdj_A 180 IAAQADIVVTATRSTT----PLFA--GQALRAGAFVGAI 212 (313)
T ss_dssp HHHHCSEEEECCCCSS----CSSC--GGGCCTTCEEEEC
T ss_pred HHhhCCEEEEccCCCC----cccC--HHHcCCCcEEEEC
Confidence 9999999999999753 3332 3568899988643
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.19 Score=43.13 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=57.9
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-++++ +|.+|+.++..+...|++|.++|++++..++..+. .|. . .+++++.
T Consensus 118 ~v~iiG---~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~----------~~~--------------~-~~~~~~~ 169 (263)
T 2d5c_A 118 PALVLG---AGGAGRAVAFALREAGLEVWVWNRTPQRALALAEE----------FGL--------------R-AVPLEKA 169 (263)
T ss_dssp CEEEEC---CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------HTC--------------E-ECCGGGG
T ss_pred eEEEEC---CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcc--------------c-hhhHhhc
Confidence 556666 68999999999999999999999999765543321 010 0 2356666
Q ss_pred cccCcEEEEccccchH--HHHHHHHHHhhhCCCCcEEEe
Q psy17416 193 LEDAIFIQESVPEILQ--IKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 193 l~~aDlVieavpe~~~--~k~~~~~~l~~~~~~~~ii~s 229 (290)
+++|+||.|+|.... .. ..+. .+.+++++++..
T Consensus 170 -~~~Divi~~tp~~~~~~~~-~~l~--~~~l~~g~~viD 204 (263)
T 2d5c_A 170 -REARLLVNATRVGLEDPSA-SPLP--AELFPEEGAAVD 204 (263)
T ss_dssp -GGCSEEEECSSTTTTCTTC-CSSC--GGGSCSSSEEEE
T ss_pred -cCCCEEEEccCCCCCCCCC-CCCC--HHHcCCCCEEEE
Confidence 899999999997641 10 1111 345778887764
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.037 Score=49.57 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=57.5
Q ss_pred CcHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcE--EeecCCCCChHHHhcccCC-CCce
Q psy17416 2 PVLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTI--LSSSTSSFLPSVLSEHSTH-RSQF 64 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i--~~snts~~~~~~l~~~~~~-~~r~ 64 (290)
+|. +++++||+||-++. .|..+-+++.+++.+.+ |+++ +.||..+....-+...... |+|+
T Consensus 68 ~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~sg~p~~rv 145 (324)
T 3gvi_A 68 NDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFSGLPAHKV 145 (324)
T ss_dssp SSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGE
T ss_pred CCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhcCCCHHHE
Confidence 566 79999999999862 25677889999999998 6775 4566554433333333343 4778
Q ss_pred eeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 65 ~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
+|+. |.-+.......+++.+|..|-.+
T Consensus 146 iG~~------------------~~LD~~R~~~~la~~lgv~~~~v 172 (324)
T 3gvi_A 146 VGMA------------------GVLDSARFRYFLSEEFNVSVEDV 172 (324)
T ss_dssp EECC------------------HHHHHHHHHHHHHHHHTCCGGGE
T ss_pred Eeec------------------CccHHHHHHHHHHHHhCcCHHHC
Confidence 8774 33334445566777788755333
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.075 Score=47.02 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=65.5
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCC------ChHHHhcccCC--CCceeeeccCCCCC
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF------LPSVLSEHSTH--RSQFIVAHPVNPPY 74 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~------~~~~l~~~~~~--~~r~~g~hf~~P~~ 74 (290)
|++++++++|+||-|++.+ ...++++++.. +++++++.+.+.++ ....+++.+.. +....+.....|..
T Consensus 64 ~~~~~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~ 140 (335)
T 1txg_A 64 QLEKCLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAI 140 (335)
T ss_dssp GHHHHHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCC
T ss_pred hHHHHHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCc
Confidence 7778899999999999987 45788899988 88899887766555 23455554432 11011111233432
Q ss_pred CCCe-----eeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecc
Q psy17416 75 FIPL-----VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 112 (290)
Q Consensus 75 ~~~l-----vEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d 112 (290)
.... ..++.+. .+++..+.+.+++...|...... .|
T Consensus 141 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~-~d 181 (335)
T 1txg_A 141 AREVAKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVT-TD 181 (335)
T ss_dssp HHHHHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEE-SC
T ss_pred HHHHHccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEec-Cc
Confidence 1110 1233333 35778888888888888755444 44
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.11 Score=40.72 Aligned_cols=94 Identities=9% Similarity=-0.027 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHcCceeEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLS--EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~--e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|.||..++..+.+.|++|..++.+. +. ..++....++.+....+|+++
T Consensus 26 g~~G~~~~~~L~~~G~~v~~vnp~~~g~~------------------------------i~G~~~~~sl~el~~~~Dlvi 75 (145)
T 2duw_A 26 DRPSYRVMKYLLDQGYHVIPVSPKVAGKT------------------------------LLGQQGYATLADVPEKVDMVD 75 (145)
T ss_dssp TSHHHHHHHHHHHHTCCEEEECSSSTTSE------------------------------ETTEECCSSTTTCSSCCSEEE
T ss_pred CChHHHHHHHHHHCCCEEEEeCCcccccc------------------------------cCCeeccCCHHHcCCCCCEEE
Confidence 6789999999999999865555433 11 023344566776667899999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCC-CCCcEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST-HRSQFIV 251 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~-~~~r~ig 251 (290)
.++|... -.+++.++.+ ...+.++. .+++. ..++++... .--|++|
T Consensus 76 i~vp~~~--v~~v~~~~~~-~g~~~i~i-~~~~~-~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 76 VFRNSEA--AWGVAQEAIA-IGAKTLWL-QLGVI-NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp CCSCSTH--HHHHHHHHHH-HTCCEEEC-CTTCC-CHHHHHHHHTTTCEEEC
T ss_pred EEeCHHH--HHHHHHHHHH-cCCCEEEE-cCChH-HHHHHHHHHHcCCEEEc
Confidence 9999543 5677777665 34555554 34444 334444333 2345554
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.11 Score=44.00 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=50.7
Q ss_pred eeEEecccchhHHHHHHHHHHcCcee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
|+++ +|.||+.++..+...|+++ .++|+++. . + . ..+++++.+
T Consensus 4 giIG---~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~----~-----------~-----------------~~~~~~~l~ 47 (236)
T 2dc1_A 4 GLIG---YGAIGKFLAEWLERNGFEIAAILDVRGE-H----E-----------K-----------------MVRGIDEFL 47 (236)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEEECSSCC-C----T-----------T-----------------EESSHHHHT
T ss_pred EEEC---CCHHHHHHHHHHhcCCCEEEEEEecCcc-h----h-----------h-----------------hcCCHHHHh
Confidence 5665 6999999999888889997 68998741 1 1 0 246777777
Q ss_pred -ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 194 -EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 194 -~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
.++|+|++|+|.+.. .++. ...+..+..+...
T Consensus 48 ~~~~DvVv~~~~~~~~--~~~~---~~~l~~G~~vv~~ 80 (236)
T 2dc1_A 48 QREMDVAVEAASQQAV--KDYA---EKILKAGIDLIVL 80 (236)
T ss_dssp TSCCSEEEECSCHHHH--HHHH---HHHHHTTCEEEES
T ss_pred cCCCCEEEECCCHHHH--HHHH---HHHHHCCCcEEEE
Confidence 689999999996542 2332 2344566655543
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.04 Score=52.09 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=64.0
Q ss_pred CcHHhhcc---cCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccC-CCCceeeeccCCCCC-
Q psy17416 2 PVLRECLE---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY- 74 (290)
Q Consensus 2 ~~l~~~~~---~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~-~~~r~~g~hf~~P~~- 74 (290)
+|++|+++ ++|+|+-+||....++. ++.++...++++.|+...+++.+.+ +++..+. +--+++++.....+.
T Consensus 57 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~-vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~g 135 (484)
T 4gwg_A 57 QSLKEMVSKLKKPRRIILLVKAGQAVDD-FIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEG 135 (484)
T ss_dssp SSHHHHHHTBCSSCEEEECSCSSHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHH
T ss_pred CCHHHHHhhccCCCEEEEecCChHHHHH-HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHH
Confidence 57777665 69999999999877764 6788988998888887766665533 4444332 112233331111000
Q ss_pred --CCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 75 --FIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 75 --~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
.-+ =++.|. +++.++.+..+++.+|..+
T Consensus 136 A~~G~--~im~GG--~~ea~~~v~pll~~ig~~v 165 (484)
T 4gwg_A 136 ARYGP--SLMPGG--NKEAWPHIKTIFQGIAAKV 165 (484)
T ss_dssp HHHCC--EEEEEE--CGGGHHHHHHHHHHHSCBC
T ss_pred HhcCC--eeecCC--CHHHHHHHHHHHHHhcCcc
Confidence 001 234443 6789999999999999854
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.37 Score=45.39 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=56.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..++..|.+|.++|++++....+.. .|. . ..++++++..+|+|++
T Consensus 273 aGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g~--------------d-v~~lee~~~~aDvVi~ 326 (488)
T 3ond_A 273 YGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EGL--------------Q-VLTLEDVVSEADIFVT 326 (488)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC--------------E-ECCGGGTTTTCSEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hCC--------------c-cCCHHHHHHhcCEEEe
Confidence 6789999999999999999999999987665544 111 1 2456677889999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
+....--+. .+..+.+++++++....
T Consensus 327 atG~~~vl~----~e~l~~mk~gaiVvNaG 352 (488)
T 3ond_A 327 TTGNKDIIM----LDHMKKMKNNAIVCNIG 352 (488)
T ss_dssp CSSCSCSBC----HHHHTTSCTTEEEEESS
T ss_pred CCCChhhhh----HHHHHhcCCCeEEEEcC
Confidence 764222111 22345678898886433
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.26 Score=45.49 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=54.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCC--CCCCChhhhhcccccCCchHhh-cccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL--KGSLSPEEQFGLISGTPVLREC-LEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~--~~~~~~~~~~~~i~~~~~l~~~-l~~aDl 198 (290)
+|.+|..++..+...|++|+++|.+++.++.+.+ .|.. .+.... ...+.++ +.+||+
T Consensus 12 ~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-----------~g~~vi~GDat~---------~~~L~~agi~~A~~ 71 (413)
T 3l9w_A 12 FGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-----------FGMKVFYGDATR---------MDLLESAGAAKAEV 71 (413)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-----------TTCCCEESCTTC---------HHHHHHTTTTTCSE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-----------CCCeEEEcCCCC---------HHHHHhcCCCccCE
Confidence 6899999999999999999999999998876654 2221 111110 1123333 678999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCC-cEEE
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSN-TILS 228 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~-~ii~ 228 (290)
||.+++.+.. ........+.+.++ .|++
T Consensus 72 viv~~~~~~~--n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 72 LINAIDDPQT--NLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp EEECCSSHHH--HHHHHHHHHHHCTTCEEEE
T ss_pred EEECCCChHH--HHHHHHHHHHhCCCCeEEE
Confidence 9999997653 23333334444455 4555
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.2 Score=45.29 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=58.8
Q ss_pred eeeEEecccchhHHHHHHHHHH--cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~--~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.+|+.++..+.. ...+|.+||++++..++..+.+.. . .+ -.+...+++++
T Consensus 132 v~iIG---aG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~-------~---~g--------~~~~~~~~~~e 190 (350)
T 1x7d_A 132 MALIG---NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE-------Y---SG--------LTIRRASSVAE 190 (350)
T ss_dssp EEEEC---CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT-------C---TT--------CEEEECSSHHH
T ss_pred EEEEC---CcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh-------c---cC--------ceEEEeCCHHH
Confidence 45666 68899988776543 346899999999887765542211 0 00 01234578888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+++++|+||.|+|... ...++. .+.+++++.+..
T Consensus 191 av~~aDiVi~aTps~~--~~pvl~--~~~l~~G~~V~~ 224 (350)
T 1x7d_A 191 AVKGVDIITTVTADKA--YATIIT--PDMLEPGMHLNA 224 (350)
T ss_dssp HHTTCSEEEECCCCSS--EEEEEC--GGGCCTTCEEEE
T ss_pred HHhcCCEEEEeccCCC--CCceec--HHHcCCCCEEEE
Confidence 8999999999999752 011111 246788887763
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.17 Score=44.88 Aligned_cols=107 Identities=11% Similarity=0.063 Sum_probs=68.8
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH-HHhcccCCCCceeeec------cCCCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS-VLSEHSTHRSQFIVAH------PVNPPY 74 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~-~l~~~~~~~~r~~g~h------f~~P~~ 74 (290)
+|++ +++++|+||-|++.. .+ .++++++...+++++++.|.+.++... .+.+.++ +++++.- ...|-.
T Consensus 79 ~~~~-~~~~~D~vilavk~~-~~-~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~ 153 (318)
T 3hwr_A 79 SDPS-AVQGADLVLFCVKST-DT-QSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGH 153 (318)
T ss_dssp SCGG-GGTTCSEEEECCCGG-GH-HHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTE
T ss_pred CCHH-HcCCCCEEEEEcccc-cH-HHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeE
Confidence 4565 468999999999998 44 688999999999999999999999984 5666664 5666421 122332
Q ss_pred CCCeeeEeeCCCC--CHHHHHHHHHHHHHhCCccEEEeccceeeE
Q psy17416 75 FIPLVEIVPAAWT--SERVITRTREIMTEIGMKPVTLTTEIRGFA 117 (290)
Q Consensus 75 ~~~lvEiv~~~~t--~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~ 117 (290)
..|+..+.-+ +.+..+.+.+++..-|..... ..|..|..
T Consensus 154 ---~~~~~~g~~~ig~~~~~~~l~~~l~~~~~~~~~-~~Di~~~~ 194 (318)
T 3hwr_A 154 ---VRHHGRGELVIEPTSHGANLAAIFAAAGVPVET-SDNVRGAL 194 (318)
T ss_dssp ---EEEEEEEEEEECCCTTTHHHHHHHHHTTCCEEE-CSCHHHHH
T ss_pred ---EEEcCCceEEEcCCHHHHHHHHHHHhCCCCcEe-chHHHHHH
Confidence 2232222100 023345667777777775443 35654443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.04 Score=49.75 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=56.6
Q ss_pred CCcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCCc--EEeecCCCCChHHHhcccCCCCce
Q psy17416 1 TPVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSNT--ILSSSTSSFLPSVLSEHSTHRSQF 64 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~~--i~~snts~~~~~~l~~~~~~~~r~ 64 (290)
++|++++++|||+||-++ ..|.++.+++...+.+.++... ++.|| |+.-++..+. +.
T Consensus 67 t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN----Pvd~~t~i~~---k~ 139 (343)
T 3fi9_A 67 TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN----PADITGLVTL---IY 139 (343)
T ss_dssp ESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS----SHHHHHHHHH---HH
T ss_pred cCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC----chHHHHHHHH---HH
Confidence 368889999999999874 3567888999999999985553 34554 5554443331 11
Q ss_pred eeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 65 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 65 ~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
-| .|+ .++ +. .|.-++......+++++|..|-
T Consensus 140 sg----~p~--~rv---~g--~t~LDs~R~~~~la~~l~v~~~ 171 (343)
T 3fi9_A 140 SG----LKP--SQV---TT--LAGLDSTRLQSELAKHFGIKQS 171 (343)
T ss_dssp HT----CCG--GGE---EE--ECCHHHHHHHHHHHHHHTSCGG
T ss_pred cC----CCc--ceE---EE--ecCcHHHHHHHHHHHHhCcCHH
Confidence 11 122 222 32 2566666667777888986553
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.23 Score=44.47 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=57.5
Q ss_pred cchhHHHHHHHHHHcCc--e-----eEEecCCHH-HHHHHH-HHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 122 HGLIGQAWAMIFASAGY--K-----VSLYDVLSE-QIENAK-NTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~-----V~l~d~~~e-~l~~a~-~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+|.+|..++..++..|. + +.++|.++. ...++. ..+.+ ... .....+..+++..++
T Consensus 12 aG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~------------~~~---~~~~~~~~~~~~~~~ 76 (333)
T 5mdh_A 12 AGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD------------CAL---PLLKDVIATDKEEIA 76 (333)
T ss_dssp TSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH------------TCC---TTEEEEEEESCHHHH
T ss_pred CCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHh------------hhh---cccCCEEEcCCcHHH
Confidence 58889999999988776 5 999999752 111111 11111 000 012345556676678
Q ss_pred cccCcEEEEcc--c------------cchHHHHHHHHHHhhhCCCCc-EEE
Q psy17416 193 LEDAIFIQESV--P------------EILQIKHQVYRAIDIFMSSNT-ILS 228 (290)
Q Consensus 193 l~~aDlVieav--p------------e~~~~k~~~~~~l~~~~~~~~-ii~ 228 (290)
+++||+||.+. | .|..+-+++...+.+..++++ ++.
T Consensus 77 ~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~viv 127 (333)
T 5mdh_A 77 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIV 127 (333)
T ss_dssp TTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999864 2 134566777788888888775 443
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.084 Score=49.38 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCcHHhhcccCcEEEEccc----------CCh--------------------------HHHHHHHHHHHhhcCCCcEEee
Q psy17416 1 TPVLRECLEDAIFIQESVP----------EIL--------------------------QIKHQVYRAIDIFMSSNTILSS 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------e~~--------------------------~~K~~~~~~~~~~~~~~~i~~s 44 (290)
|+|+++|++|||+||++++ |++ .+=+++.+++.+.| |++++..
T Consensus 66 TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~-p~a~~i~ 144 (450)
T 3fef_A 66 VSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYA-PESWVIN 144 (450)
T ss_dssp ESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred ECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHC-CCeEEEE
Confidence 6899999999999999994 222 23456677888887 5665432
Q ss_pred cCCCCChHHHhcccC--C-CCceeeec
Q psy17416 45 STSSFLPSVLSEHST--H-RSQFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~--~-~~r~~g~h 68 (290)
-|| |+.-++..+. . +.|++|+.
T Consensus 145 -~tN-Pvdi~t~~~~k~~p~~rviG~C 169 (450)
T 3fef_A 145 -YTN-PMSVCTRVLYKVFPGIKAIGCC 169 (450)
T ss_dssp -CCS-SHHHHHHHHHHHCTTCEEEECC
T ss_pred -ecC-chHHHHHHHHHHCCCCCEEEeC
Confidence 222 5555555442 2 36777775
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=92.33 E-value=0.55 Score=41.68 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=58.2
Q ss_pred eeeEEecccchhHHHHHHHHHH--cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~--~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.+++..+..+.. ....|.+||++++..++..+.+.. .+ . .+. .+++++
T Consensus 128 v~iIG---aG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-----~-------~~~-~~~~~e 184 (322)
T 1omo_A 128 FGFIG---CGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-----I-------SAS-VQPAEE 184 (322)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-----C-------CEE-ECCHHH
T ss_pred EEEEc---CcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-----c-------eEE-ECCHHH
Confidence 45565 68899988887765 346899999999887766553321 11 0 123 467888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++ ++|+|+.|+|... .++. ...+++++.+..
T Consensus 185 ~v-~aDvVi~aTp~~~----pv~~--~~~l~~G~~V~~ 215 (322)
T 1omo_A 185 AS-RCDVLVTTTPSRK----PVVK--AEWVEEGTHINA 215 (322)
T ss_dssp HT-SSSEEEECCCCSS----CCBC--GGGCCTTCEEEE
T ss_pred Hh-CCCEEEEeeCCCC----ceec--HHHcCCCeEEEE
Confidence 88 9999999999754 2221 246778887763
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=92.32 E-value=0.053 Score=50.25 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=42.4
Q ss_pred CCcHHhhcccCcEEEEcc----------cCCh------------------------HHHHHHHHHHHhhcCCCcEEe--e
Q psy17416 1 TPVLRECLEDAIFIQESV----------PEIL------------------------QIKHQVYRAIDIFMSSNTILS--S 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~----------~e~~------------------------~~K~~~~~~~~~~~~~~~i~~--s 44 (290)
|+|+++|++|||+||.++ .|.+ .+=+++.+++.+.| |+++. |
T Consensus 64 t~d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~T 141 (417)
T 1up7_A 64 SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFT 141 (417)
T ss_dssp CSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECS
T ss_pred eCCHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeC
Confidence 578989999999999999 2222 23458889999998 77554 4
Q ss_pred cCCCCChHHHhcccC--CCC-ceeeec
Q psy17416 45 STSSFLPSVLSEHST--HRS-QFIVAH 68 (290)
Q Consensus 45 nts~~~~~~l~~~~~--~~~-r~~g~h 68 (290)
| |+.-++..+. .|. |++|+-
T Consensus 142 N----Pvdi~t~a~~k~~p~~rviG~c 164 (417)
T 1up7_A 142 N----PSGHITEFVRNYLEYEKFIGLC 164 (417)
T ss_dssp S----SHHHHHHHHHHTTCCSSEEECC
T ss_pred C----hHHHHHHHHHHhCCCCCEEEeC
Confidence 4 5554444431 244 888873
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.85 Score=42.42 Aligned_cols=144 Identities=15% Similarity=0.228 Sum_probs=83.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.-|.+-|+.+...|.+|.+--+ +...... ...+.++.+.|+ + ..+++++++.||+|+.
T Consensus 45 yGsQG~AqAlNLRDSGv~V~Vglr-~~s~~e~----~~S~~~A~~~Gf--------------~-v~~~~eA~~~ADvV~~ 104 (491)
T 3ulk_A 45 CGAQGLNQGLNMRDSGLDISYALR-KEAIAEK----RASWRKATENGF--------------K-VGTYEELIPQADLVIN 104 (491)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEEC-HHHHHTT----CHHHHHHHHTTC--------------E-EEEHHHHGGGCSEEEE
T ss_pred CChHhHHHHhHHHhcCCcEEEEeC-CCCcccc----cchHHHHHHCCC--------------E-ecCHHHHHHhCCEEEE
Confidence 688899999999999999876544 3221110 011222222222 2 2467889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCC----------CC-eEEEecCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF----------IP-LVEIVPAA 270 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~----------~~-lvEvv~~~ 270 (290)
-+|+.. -..++++|.+.++++..+.- +.++.+..-.-..+....++-.-|-.|-+. .| ++=|-+-.
T Consensus 105 L~PD~~--q~~vy~~I~p~lk~G~~L~f-aHGFnI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeq 181 (491)
T 3ulk_A 105 LTPDKQ--HSDVVRTVQPLMKDGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 181 (491)
T ss_dssp CSCGGG--HHHHHHHHGGGSCTTCEEEE-SSCHHHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGG
T ss_pred eCChhh--HHHHHHHHHhhCCCCCEEEe-cCcccccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCC
Confidence 999876 56889999999999998863 344444211111111124444444222211 11 33332222
Q ss_pred CCCHHHHHHHHHHHHHcC
Q psy17416 271 WTSERVITRTREIMTEIG 288 (290)
Q Consensus 271 ~t~~e~~~~~~~~~~~lg 288 (290)
..+-.+.+.+.++...+|
T Consensus 182 D~sG~a~~~AlayA~aiG 199 (491)
T 3ulk_A 182 DPKGEGMAIAKAWAAATG 199 (491)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHhcC
Confidence 334456667777777776
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.34 Score=43.00 Aligned_cols=88 Identities=20% Similarity=0.160 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHc-C--ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc--CCchHhhcccC
Q psy17416 122 HGLIGQAWAMIFASA-G--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG--TPVLRECLEDA 196 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~-G--~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~--~~~l~~~l~~a 196 (290)
.|.+|..++..+... + .++.++|+++ ... .. .++- . . . . ....++. +++..+++++|
T Consensus 9 aG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~-G~-----a~Dl-~-~-~---~-----~~~~v~~~~~~~~~~~~~~a 70 (312)
T 3hhp_A 9 AGGIGQALALLLKTQLPSGSELSLYDIAP-VTP-GV-----AVDL-S-H-I---P-----TAVKIKGFSGEDATPALEGA 70 (312)
T ss_dssp TSHHHHHHHHHHHHHSCTTEEEEEECSST-THH-HH-----HHHH-H-T-S---C-----SSEEEEEECSSCCHHHHTTC
T ss_pred CCHHHHHHHHHHHhCCCCCceEEEEecCC-Cch-hH-----HHHh-h-C-C---C-----CCceEEEecCCCcHHHhCCC
Confidence 478899999888775 4 4899999987 222 11 1111 0 0 0 0 0112322 12444579999
Q ss_pred cEEEEcccc--------------chHHHHHHHHHHhhhCCCCcEE
Q psy17416 197 IFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 197 DlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 227 (290)
|+||.+..- |..+-+++.+.+.++++...++
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vl 115 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIG 115 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 999998632 2344556666788886544433
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.065 Score=47.74 Aligned_cols=82 Identities=12% Similarity=0.012 Sum_probs=53.1
Q ss_pred HhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhccc----CC-CCcee
Q psy17416 5 RECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHS----TH-RSQFI 65 (290)
Q Consensus 5 ~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~----~~-~~r~~ 65 (290)
.+++++||+||+++ ..|..+.+++.+.+.+.+ |++++..-| -|+.-++..+ .. |+|++
T Consensus 73 ~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvs--NPvd~~t~~~~k~sg~p~~rvi 149 (315)
T 3tl2_A 73 YADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLT--NPVDAMTYSVFKEAGFPKERVI 149 (315)
T ss_dssp GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC--SSHHHHHHHHHHHHCCCGGGEE
T ss_pred HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECC--ChHHHHHHHHHHhcCCChHHEE
Confidence 46899999999997 235678899999999997 566543222 2444333322 22 45666
Q ss_pred eeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 66 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 66 g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
|+ .|.-+.......+++.+|..|-
T Consensus 150 G~------------------gt~LD~~R~~~~la~~lgv~~~ 173 (315)
T 3tl2_A 150 GQ------------------SGVLDTARFRTFIAQELNLSVK 173 (315)
T ss_dssp EC------------------CHHHHHHHHHHHHHHHHTCCGG
T ss_pred ee------------------ccCcHHHHHHHHHHHHhCcCHH
Confidence 65 3555666666777788887543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.37 Score=39.65 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=54.5
Q ss_pred cchhHHHHHHHHH-HcCceeEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFA-SAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~-~~G~~V~l~d~~~e-~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+|+.++..++ ..|++|.+.+++++ .++.... .+ . ........+.-..++.++++++|+|
T Consensus 14 sg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~-----------~~---~--~~~~~~~D~~d~~~~~~~~~~~d~v 77 (221)
T 3r6d_A 14 AGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII-----------DH---E--RVTVIEGSFQNPGXLEQAVTNAEVV 77 (221)
T ss_dssp TSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH-----------TS---T--TEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc-----------CC---C--ceEEEECCCCCHHHHHHHHcCCCEE
Confidence 4788999999999 89999999999987 5443221 00 0 0000111122123456677899999
Q ss_pred EEcccc-chHHHHHHHHHHhhhCCCCcEE-EeCCCC
Q psy17416 200 QESVPE-ILQIKHQVYRAIDIFMSSNTIL-SSSTSS 233 (290)
Q Consensus 200 ieavpe-~~~~k~~~~~~l~~~~~~~~ii-~s~ts~ 233 (290)
|-+... +++ -+.++..+.+. ..+.+| +|+...
T Consensus 78 v~~ag~~n~~-~~~~~~~~~~~-~~~~iv~iSs~~~ 111 (221)
T 3r6d_A 78 FVGAMESGSD-MASIVKALSRX-NIRRVIGVSMAGL 111 (221)
T ss_dssp EESCCCCHHH-HHHHHHHHHHT-TCCEEEEEEETTT
T ss_pred EEcCCCCChh-HHHHHHHHHhc-CCCeEEEEeecee
Confidence 988865 444 34444444332 333444 454443
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.00 E-value=1.5 Score=38.90 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=59.3
Q ss_pred eeEEecccchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||...+..+... ++++. ++|++++..++..+ +.| ....+++++.
T Consensus 8 giiG---~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------~~g--------------~~~~~~~~~~ 60 (344)
T 3euw_A 8 ALFG---AGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------ANG--------------AEAVASPDEV 60 (344)
T ss_dssp EEEC---CSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------TTT--------------CEEESSHHHH
T ss_pred EEEC---CcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------HcC--------------CceeCCHHHH
Confidence 5555 688999988888765 67765 79999987655433 011 2346788888
Q ss_pred cc--cCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHHH
Q psy17416 193 LE--DAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSV 238 (290)
Q Consensus 193 l~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~ 238 (290)
++ ++|+|+.|+|..... ++.....+ .+. +++-...+.+..+
T Consensus 61 l~~~~~D~V~i~tp~~~h~--~~~~~al~---~gk~v~~EKP~~~~~~~ 104 (344)
T 3euw_A 61 FARDDIDGIVIGSPTSTHV--DLITRAVE---RGIPALCEKPIDLDIEM 104 (344)
T ss_dssp TTCSCCCEEEECSCGGGHH--HHHHHHHH---TTCCEEECSCSCSCHHH
T ss_pred hcCCCCCEEEEeCCchhhH--HHHHHHHH---cCCcEEEECCCCCCHHH
Confidence 87 899999999987754 44433322 222 4544334455443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.91 E-value=0.45 Score=36.93 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=51.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~-~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlV 199 (290)
+|.+|..++..+...|++|+++|++ ++..++... .+ ..|... ..+..+-...+.++ +.++|+|
T Consensus 11 ~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~----~~----~~~~~~-------i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 11 HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQ----RL----GDNADV-------IPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHH----HH----CTTCEE-------EESCTTSHHHHHHHTTTTCSEE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHH----hh----cCCCeE-------EEcCCCCHHHHHHcChhhCCEE
Confidence 6889999999999999999999998 454433222 10 011100 00111101223333 7899999
Q ss_pred EEccccchHHHHHHHHHHhhhC-CCCcEEE
Q psy17416 200 QESVPEILQIKHQVYRAIDIFM-SSNTILS 228 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~-~~~~ii~ 228 (290)
|-+++.+. .......+.+.+ +...+++
T Consensus 76 i~~~~~d~--~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 76 LALSDNDA--DNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp EECSSCHH--HHHHHHHHHHHHTSSSCEEE
T ss_pred EEecCChH--HHHHHHHHHHHHCCCCEEEE
Confidence 99998764 223333344344 4444554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.3 Score=44.92 Aligned_cols=32 Identities=28% Similarity=0.216 Sum_probs=28.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENA 153 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a 153 (290)
+|.+|..++..+...|.+|+++|++++.++.+
T Consensus 180 aG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 180 AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 69999999999999999999999999877654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=91.46 E-value=0.34 Score=42.33 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc--CCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG--TPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~--~~~l~~~l~~aDl 198 (290)
+|-+|+.++..++..|. +|.+++++++..++..+.+..... + . .+.. ..++.+.++++|+
T Consensus 135 aGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~-----~-----~-------~i~~~~~~~l~~~l~~~Di 197 (283)
T 3jyo_A 135 AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVG-----R-----E-------AVVGVDARGIEDVIAAADG 197 (283)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHT-----S-----C-------CEEEECSTTHHHHHHHSSE
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcC-----C-----c-------eEEEcCHHHHHHHHhcCCE
Confidence 57788999999999998 799999999887666554443210 0 0 0111 1366677889999
Q ss_pred EEEccccc
Q psy17416 199 IQESVPEI 206 (290)
Q Consensus 199 Vieavpe~ 206 (290)
||-|+|--
T Consensus 198 VInaTp~G 205 (283)
T 3jyo_A 198 VVNATPMG 205 (283)
T ss_dssp EEECSSTT
T ss_pred EEECCCCC
Confidence 99999843
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=91.17 E-value=1.2 Score=39.07 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=43.3
Q ss_pred cchhHHHH-HHHHHHcCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc--cCc
Q psy17416 122 HGLIGQAW-AMIFASAGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE--DAI 197 (290)
Q Consensus 122 ~G~~g~~i-a~~~~~~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~--~aD 197 (290)
.|.||..+ +..+...|+++. ++|++++..++..+ +.|.. ...+++++.++ ++|
T Consensus 8 ~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~----------~~g~~-------------~~~~~~~~~l~~~~~D 64 (332)
T 2glx_A 8 ASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYAT----------ENGIG-------------KSVTSVEELVGDPDVD 64 (332)
T ss_dssp CCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHH----------HTTCS-------------CCBSCHHHHHTCTTCC
T ss_pred ccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHH----------HcCCC-------------cccCCHHHHhcCCCCC
Confidence 58888886 655555778765 78999987654332 11110 13567887776 599
Q ss_pred EEEEccccchH
Q psy17416 198 FIQESVPEILQ 208 (290)
Q Consensus 198 lVieavpe~~~ 208 (290)
+|+.|+|....
T Consensus 65 ~V~i~tp~~~h 75 (332)
T 2glx_A 65 AVYVSTTNELH 75 (332)
T ss_dssp EEEECSCGGGH
T ss_pred EEEEeCChhHh
Confidence 99999997764
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.75 Score=40.59 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHcCc--eeEEecC--CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCC-chHhhcccCc
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDV--LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VLRECLEDAI 197 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~--~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~-~l~~~l~~aD 197 (290)
|.+|..++..+...|+ ++.++|+ +++.++.....+.+.. .. .+. .-.+..++ ++.+++++||
T Consensus 10 G~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~------~~-~~~------~~~i~~~~d~l~~al~gaD 76 (313)
T 1hye_A 10 GRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL------AG-TRS------DANIYVESDENLRIIDESD 76 (313)
T ss_dssp SHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH------TT-SCC------CCEEEEEETTCGGGGTTCS
T ss_pred ChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH------Hh-cCC------CeEEEeCCcchHHHhCCCC
Confidence 8888999988887775 6899999 7654432112122110 00 000 01222223 2566899999
Q ss_pred EEEEccc--c------------chHHHHHHHHHHhhhCCCCcEEEeCCCC-cCHHHHhcc-CC-CCCcEEEe
Q psy17416 198 FIQESVP--E------------ILQIKHQVYRAIDIFMSSNTILSSSTSS-FLPSVLSEH-ST-HRSQFIVA 252 (290)
Q Consensus 198 lVieavp--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~-~~~~~la~~-~~-~~~r~ig~ 252 (290)
+||.+.- . |..+-+++.+.+.+.. ++++...|.. -.++.++.. .. .|.|++|+
T Consensus 77 ~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~~~t~~~~k~~~~p~~rviG~ 146 (313)
T 1hye_A 77 VVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVDVMTYKALVDSKFERNQVFGL 146 (313)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHHHHHHHHHHHHCCCTTSEEEC
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHHHHHHHHHHhhCcChhcEEEe
Confidence 9998752 1 2234456667777777 4444422221 112233222 22 34677776
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.32 Score=39.89 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIE 151 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~ 151 (290)
.|.+|+.++..+++.|++|.+.+++++.+.
T Consensus 9 tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (224)
T 3h2s_A 9 TGRAGSAIVAEARRRGHEVLAVVRDPQKAA 38 (224)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 478899999999999999999999987654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.98 Score=37.40 Aligned_cols=65 Identities=8% Similarity=0.003 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.++..++..|++|.+.+++++.++.... .+.. . -....++ .++.+++.++|.||-
T Consensus 30 tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-----------~~~~----~--~~~~Dl~--~~~~~~~~~~D~vi~ 90 (236)
T 3e8x_A 30 NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-----------RGAS----D--IVVANLE--EDFSHAFASIDAVVF 90 (236)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-----------TTCS----E--EEECCTT--SCCGGGGTTCSEEEE
T ss_pred CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-----------CCCc----e--EEEcccH--HHHHHHHcCCCEEEE
Confidence 4788999999999999999999999876544322 1110 0 0111222 556677889999998
Q ss_pred cccc
Q psy17416 202 SVPE 205 (290)
Q Consensus 202 avpe 205 (290)
+...
T Consensus 91 ~ag~ 94 (236)
T 3e8x_A 91 AAGS 94 (236)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.48 Score=41.59 Aligned_cols=67 Identities=9% Similarity=-0.012 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|+.++..+...|. +|++++++++..++..+. .+...+ ......++.+.+.++|+||
T Consensus 149 aGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~----------~~~~~~---------~~~~~~~~~~~~~~aDivI 209 (297)
T 2egg_A 149 AGGGARGIYFSLLSTAAERIDMANRTVEKAERLVRE----------GDERRS---------AYFSLAEAETRLAEYDIII 209 (297)
T ss_dssp CSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH----------SCSSSC---------CEECHHHHHHTGGGCSEEE
T ss_pred cHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH----------hhhccC---------ceeeHHHHHhhhccCCEEE
Confidence 58899999999999998 999999999876544331 111000 0000134556778999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
.|+|...
T Consensus 210 n~t~~~~ 216 (297)
T 2egg_A 210 NTTSVGM 216 (297)
T ss_dssp ECSCTTC
T ss_pred ECCCCCC
Confidence 9999654
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.81 Score=40.84 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=49.3
Q ss_pred eeEEecccchhHHHHHHHHHHc--CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA--GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~--G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ +|.||...+..+... ++++. ++|++++..++..+. . ++..++|+++
T Consensus 17 giiG---~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------~--------------~~~~~~~~~~ 69 (354)
T 3q2i_A 17 ALVG---CGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------T--------------GARGHASLTD 69 (354)
T ss_dssp EEEC---CSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------H--------------CCEEESCHHH
T ss_pred EEEc---CcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------c--------------CCceeCCHHH
Confidence 5555 688999888888775 77755 899999876654431 1 1234678888
Q ss_pred hcc--cCcEEEEccccchHH
Q psy17416 192 CLE--DAIFIQESVPEILQI 209 (290)
Q Consensus 192 ~l~--~aDlVieavpe~~~~ 209 (290)
.++ ++|+|+.|+|.....
T Consensus 70 ll~~~~~D~V~i~tp~~~h~ 89 (354)
T 3q2i_A 70 MLAQTDADIVILTTPSGLHP 89 (354)
T ss_dssp HHHHCCCSEEEECSCGGGHH
T ss_pred HhcCCCCCEEEECCCcHHHH
Confidence 776 799999999987643
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=90.49 E-value=1.9 Score=37.50 Aligned_cols=91 Identities=10% Similarity=0.042 Sum_probs=57.1
Q ss_pred eeEEecccchhHHH-HHHHHHH-cCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQA-WAMIFAS-AGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~-ia~~~~~-~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ +|.||.. .+..+.. .++++. ++|++++..++..+. .| +...+|+++
T Consensus 10 giIG---~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~~--------------~~~~~~~~~ 62 (308)
T 3uuw_A 10 GMIG---LGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD----------YR--------------IMPFDSIES 62 (308)
T ss_dssp EEEC---CSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH----------HT--------------CCBCSCHHH
T ss_pred EEEe---cCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC--------------CCCcCCHHH
Confidence 4555 6888886 6666665 467776 899999877654431 11 112578888
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHH
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPS 237 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~ 237 (290)
.++++|+|+.|+|..... ++..+.. ..+. +++---.+....
T Consensus 63 ll~~~D~V~i~tp~~~h~--~~~~~al---~~gk~vl~EKP~~~~~~ 104 (308)
T 3uuw_A 63 LAKKCDCIFLHSSTETHY--EIIKILL---NLGVHVYVDKPLASTVS 104 (308)
T ss_dssp HHTTCSEEEECCCGGGHH--HHHHHHH---HTTCEEEECSSSSSSHH
T ss_pred HHhcCCEEEEeCCcHhHH--HHHHHHH---HCCCcEEEcCCCCCCHH
Confidence 888999999999987753 4444332 2333 444333444444
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=90.09 E-value=0.73 Score=42.22 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..+...|. +|.++|++++..++..+. .|.. -+. ..++.+.+.++|+||
T Consensus 175 aG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~----------~g~~-----------~~~-~~~l~~~l~~aDvVi 232 (404)
T 1gpj_A 175 AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARD----------LGGE-----------AVR-FDELVDHLARSDVVV 232 (404)
T ss_dssp CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHH----------HTCE-----------ECC-GGGHHHHHHTCSEEE
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH----------cCCc-----------eec-HHhHHHHhcCCCEEE
Confidence 58999999999998898 999999999765332221 1110 011 235666778999999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
.|++...
T Consensus 233 ~at~~~~ 239 (404)
T 1gpj_A 233 SATAAPH 239 (404)
T ss_dssp ECCSSSS
T ss_pred EccCCCC
Confidence 9998654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=89.96 E-value=0.55 Score=40.84 Aligned_cols=154 Identities=13% Similarity=0.133 Sum_probs=97.7
Q ss_pred cccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCCCCHHH
Q psy17416 17 SVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERV 91 (290)
Q Consensus 17 a~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~ 91 (290)
..||+. ...++++.|+++=.+ |-|+.--- .++.-..+.....--..+=|+|++|=..+.. ..+.--|.|
T Consensus 62 ~lp~~~-s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~p~n~G~l~~-----g~~~~~PcT 135 (276)
T 3ngx_A 62 EKYDDI-SMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIAL-----NREFLVPAT 135 (276)
T ss_dssp EEESSC-CHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCSHHHHHHHHT-----TCCSSCCHH
T ss_pred ECCCCC-CHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCCccchhhhhc-----CCCCCCCCc
Confidence 345544 235677777666433 34665443 5677778888887556677999776443111 112223566
Q ss_pred HHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy17416 92 ITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK 171 (290)
Q Consensus 92 ~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~ 171 (290)
-..+.+++++.+ + ....-.++.| .+.+|+.+|.++.+.|..|++.++.
T Consensus 136 p~gv~~lL~~~~-----l-~Gk~vvVvG~-s~iVG~plA~lL~~~gAtVtv~~~~------------------------- 183 (276)
T 3ngx_A 136 PRAVIDIMDYYG-----Y-HENTVTIVNR-SPVVGRPLSMMLLNRNYTVSVCHSK------------------------- 183 (276)
T ss_dssp HHHHHHHHHHHT-----C-CSCEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTT-------------------------
T ss_pred HHHHHHHHHHhC-----c-CCCEEEEEcC-ChHHHHHHHHHHHHCCCeEEEEeCC-------------------------
Confidence 666677777765 2 2223334433 3568999999999999999998631
Q ss_pred CCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 172 GSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 172 ~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++++.+++||+||-|++..--++. +.++++++++-
T Consensus 184 --------------t~~L~~~~~~ADIVI~Avg~p~~I~~-------~~vk~GavVID 220 (276)
T 3ngx_A 184 --------------TKDIGSMTRSSKIVVVAVGRPGFLNR-------EMVTPGSVVID 220 (276)
T ss_dssp --------------CSCHHHHHHHSSEEEECSSCTTCBCG-------GGCCTTCEEEE
T ss_pred --------------cccHHHhhccCCEEEECCCCCccccH-------hhccCCcEEEE
Confidence 35667788999999999985432322 34689998873
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.96 E-value=0.22 Score=42.76 Aligned_cols=92 Identities=9% Similarity=-0.017 Sum_probs=56.4
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
.-++++ +|.+|+.++..+...|. +|.+++++++..++..+ .+ +.. ...++.+
T Consensus 110 ~vliiG---aGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~-----------------~~------~~~-~~~~~~~ 162 (253)
T 3u62_A 110 PVVVVG---AGGAARAVIYALLQMGVKDIWVVNRTIERAKALDF-----------------PV------KIF-SLDQLDE 162 (253)
T ss_dssp SEEEEC---CSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS-----------------SC------EEE-EGGGHHH
T ss_pred eEEEEC---cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-----------------Hc------ccC-CHHHHHh
Confidence 344454 68999999999999998 89999999875432111 00 111 1345666
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 233 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 233 (290)
+++++|+||.|+|....-....+. ...++++.++.+-...
T Consensus 163 ~~~~aDiVInatp~gm~p~~~~i~--~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 163 VVKKAKSLFNTTSVGMKGEELPVS--DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp HHHTCSEEEECSSTTTTSCCCSCC--HHHHTTCSEEEECSSS
T ss_pred hhcCCCEEEECCCCCCCCCCCCCC--HHHhCcCCEEEEeeCC
Confidence 788999999999843210000010 1234577777754444
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.79 E-value=3.1 Score=36.52 Aligned_cols=91 Identities=11% Similarity=0.095 Sum_probs=57.8
Q ss_pred eeEEecccchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||...+..+... ++++. ++|++++..++..+. . ++. .+++++.
T Consensus 7 giiG---~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~--------------~~~-~~~~~~~ 58 (331)
T 4hkt_A 7 GLLG---AGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------Y--------------GCE-VRTIDAI 58 (331)
T ss_dssp EEEC---CSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------T--------------TCE-ECCHHHH
T ss_pred EEEC---CCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------h--------------CCC-cCCHHHH
Confidence 4555 688999888887764 77776 799999876544331 0 122 4677877
Q ss_pred cc--cCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHHH
Q psy17416 193 LE--DAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSV 238 (290)
Q Consensus 193 l~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~ 238 (290)
++ ++|+|+.|+|..... ++..+.. ..+. +++-...+....+
T Consensus 59 l~~~~~D~V~i~tp~~~h~--~~~~~al---~~gk~v~~EKP~~~~~~~ 102 (331)
T 4hkt_A 59 EAAADIDAVVICTPTDTHA--DLIERFA---RAGKAIFCEKPIDLDAER 102 (331)
T ss_dssp HHCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEECSCSCSSHHH
T ss_pred hcCCCCCEEEEeCCchhHH--HHHHHHH---HcCCcEEEecCCCCCHHH
Confidence 77 799999999987754 4443332 2333 4443334555543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=89.34 E-value=2.6 Score=37.15 Aligned_cols=93 Identities=8% Similarity=-0.058 Sum_probs=58.2
Q ss_pred eeEEecccchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||...+..+... ++++. ++|++++..++..+. .|.. ..++|+++.
T Consensus 9 giiG---~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~~-------------~~~~~~~~l 62 (330)
T 3e9m_A 9 GIMS---TAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------LAIP-------------VAYGSYEEL 62 (330)
T ss_dssp EECS---CCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------TTCC-------------CCBSSHHHH
T ss_pred EEEC---chHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------cCCC-------------ceeCCHHHH
Confidence 4554 688999888888774 67765 789998876554431 1110 245788887
Q ss_pred cc--cCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHHH
Q psy17416 193 LE--DAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSV 238 (290)
Q Consensus 193 l~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~ 238 (290)
+. ++|+|+.|+|..... ++..+..+ .+. +++--..+...++
T Consensus 63 l~~~~~D~V~i~tp~~~h~--~~~~~al~---~gk~vl~EKP~~~~~~e 106 (330)
T 3e9m_A 63 CKDETIDIIYIPTYNQGHY--SAAKLALS---QGKPVLLEKPFTLNAAE 106 (330)
T ss_dssp HHCTTCSEEEECCCGGGHH--HHHHHHHH---TTCCEEECSSCCSSHHH
T ss_pred hcCCCCCEEEEcCCCHHHH--HHHHHHHH---CCCeEEEeCCCCCCHHH
Confidence 76 799999999988753 44433222 332 4544444555443
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=89.18 E-value=3.5 Score=36.54 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=57.9
Q ss_pred eeEEecccchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||...+..+... |+++. ++|++++..++..+. .| +...+|+++.
T Consensus 9 giiG---~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g--------------~~~~~~~~~~ 61 (354)
T 3db2_A 9 AAIG---LGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR----------YN--------------CAGDATMEAL 61 (354)
T ss_dssp EEEC---CSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH----------HT--------------CCCCSSHHHH
T ss_pred EEEc---cCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------cC--------------CCCcCCHHHH
Confidence 4555 688998888888766 77754 889999876654431 11 2235788888
Q ss_pred c--ccCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHH
Q psy17416 193 L--EDAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPS 237 (290)
Q Consensus 193 l--~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~ 237 (290)
+ .++|+|+.|+|..... ++..+.. ..+. +++--..+....
T Consensus 62 l~~~~~D~V~i~tp~~~h~--~~~~~al---~~gk~vl~EKP~~~~~~ 104 (354)
T 3db2_A 62 LAREDVEMVIITVPNDKHA--EVIEQCA---RSGKHIYVEKPISVSLD 104 (354)
T ss_dssp HHCSSCCEEEECSCTTSHH--HHHHHHH---HTTCEEEEESSSCSSHH
T ss_pred hcCCCCCEEEEeCChHHHH--HHHHHHH---HcCCEEEEccCCCCCHH
Confidence 7 5699999999987754 3333322 2333 444444455544
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=2 Score=39.15 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=40.1
Q ss_pred CcHHhhcccCcEEEEcccCCh---------HHHHHHHHHHHhhcCCCcEEee-cCCCCCh-HHHhcccC
Q psy17416 2 PVLRECLEDAIFIQESVPEIL---------QIKHQVYRAIDIFMSSNTILSS-STSSFLP-SVLSEHST 59 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~---------~~K~~~~~~~~~~~~~~~i~~s-nts~~~~-~~l~~~~~ 59 (290)
+|+++++++||+||-|+|... ..-.++++.+.+ +.+++++.. .|..... .++++.+.
T Consensus 65 ~~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~ 132 (402)
T 1dlj_A 65 LDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQ 132 (402)
T ss_dssp SCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTT
T ss_pred CCHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhC
Confidence 567788999999999999874 256777888888 788887764 3333322 35665553
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=88.95 E-value=1.3 Score=39.76 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=47.0
Q ss_pred eeEEecccchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||...+..+... ++++. ++|++++..+.+.+ . ++...+|+++.
T Consensus 9 giiG---~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~-----------~--------------g~~~~~~~~~l 60 (359)
T 3e18_A 9 VIVG---YGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQ-----------K--------------GLKIYESYEAV 60 (359)
T ss_dssp EEEC---CSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHT-----------T--------------TCCBCSCHHHH
T ss_pred EEEC---cCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHh-----------c--------------CCceeCCHHHH
Confidence 4555 688998887777665 67765 78999987543211 1 12346788887
Q ss_pred cc--cCcEEEEccccchHH
Q psy17416 193 LE--DAIFIQESVPEILQI 209 (290)
Q Consensus 193 l~--~aDlVieavpe~~~~ 209 (290)
++ +.|+|+.|+|.....
T Consensus 61 l~~~~~D~V~i~tp~~~h~ 79 (359)
T 3e18_A 61 LADEKVDAVLIATPNDSHK 79 (359)
T ss_dssp HHCTTCCEEEECSCGGGHH
T ss_pred hcCCCCCEEEEcCCcHHHH
Confidence 76 799999999987743
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=88.88 E-value=1.9 Score=38.14 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=55.9
Q ss_pred eeEEecccchhHHHHHHHHH-H-cCcee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFA-S-AGYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~-~-~G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ .|.||...+..+. . .|+++ .++|++++..++..+ +.|. ....+++++
T Consensus 12 ~iiG---~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g~-------------~~~~~~~~~ 65 (346)
T 3cea_A 12 AIIG---LGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELGV-------------ETTYTNYKD 65 (346)
T ss_dssp EEEC---CSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTCC-------------SEEESCHHH
T ss_pred EEEc---CCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhCC-------------CcccCCHHH
Confidence 4554 6889988887776 4 47774 578999987654333 0111 023467777
Q ss_pred hcc--cCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHHH
Q psy17416 192 CLE--DAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSV 238 (290)
Q Consensus 192 ~l~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~ 238 (290)
.++ ++|+|+.|+|..... ++..+ .+..+. +++....+....+
T Consensus 66 ~l~~~~~D~V~i~tp~~~h~--~~~~~---al~~G~~v~~eKp~~~~~~~ 110 (346)
T 3cea_A 66 MIDTENIDAIFIVAPTPFHP--EMTIY---AMNAGLNVFCEKPLGLDFNE 110 (346)
T ss_dssp HHTTSCCSEEEECSCGGGHH--HHHHH---HHHTTCEEEECSCCCSCHHH
T ss_pred HhcCCCCCEEEEeCChHhHH--HHHHH---HHHCCCEEEEcCCCCCCHHH
Confidence 776 699999999977643 33333 233454 3333234445543
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=0.86 Score=40.42 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=44.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCC---HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccC--CchHhhccc
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVL---SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT--PVLRECLED 195 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~---~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~--~~l~~~l~~ 195 (290)
+|-+|+.++..++..|. +|.+++|+ .+..++..+.+... .+. . ..-+.+. .++.+.+.+
T Consensus 162 aGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~------~~~-----~----~~~~~~~~~~~l~~~l~~ 226 (315)
T 3tnl_A 162 AGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSK------TDC-----K----AQLFDIEDHEQLRKEIAE 226 (315)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH------SSC-----E----EEEEETTCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhh------cCC-----c----eEEeccchHHHHHhhhcC
Confidence 47788999999999998 89999999 66655544433321 110 0 0001111 234556778
Q ss_pred CcEEEEccccc
Q psy17416 196 AIFIQESVPEI 206 (290)
Q Consensus 196 aDlVieavpe~ 206 (290)
+|+||-|+|--
T Consensus 227 aDiIINaTp~G 237 (315)
T 3tnl_A 227 SVIFTNATGVG 237 (315)
T ss_dssp CSEEEECSSTT
T ss_pred CCEEEECccCC
Confidence 99999999843
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.81 E-value=1.1 Score=39.64 Aligned_cols=93 Identities=14% Similarity=0.081 Sum_probs=57.8
Q ss_pred eeEEecccchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||...+..+... ++++. ++|++++..++..+. .|. ....+|+++.
T Consensus 6 giIG---~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~-------------~~~~~~~~~l 59 (344)
T 3ezy_A 6 GVIG---LGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------LGV-------------EKAYKDPHEL 59 (344)
T ss_dssp EEEC---CSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------HTC-------------SEEESSHHHH
T ss_pred EEEc---CCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------hCC-------------CceeCCHHHH
Confidence 4555 688999888777664 67765 789999876654431 111 1235788887
Q ss_pred cc--cCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHHH
Q psy17416 193 LE--DAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSV 238 (290)
Q Consensus 193 l~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~ 238 (290)
++ ++|+|+.|+|..... ++..+. +..+. +++--..+.+..+
T Consensus 60 l~~~~~D~V~i~tp~~~h~--~~~~~a---l~~gk~v~~EKP~~~~~~e 103 (344)
T 3ezy_A 60 IEDPNVDAVLVCSSTNTHS--ELVIAC---AKAKKHVFCEKPLSLNLAD 103 (344)
T ss_dssp HHCTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEEESCSCSCHHH
T ss_pred hcCCCCCEEEEcCCCcchH--HHHHHH---HhcCCeEEEECCCCCCHHH
Confidence 77 799999999987643 443332 22333 4443333455443
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=88.67 E-value=0.58 Score=39.06 Aligned_cols=85 Identities=6% Similarity=-0.076 Sum_probs=51.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlVi 200 (290)
+|.+|..++..+...|+ |+++|++++.++.+.. . .....+. .+-...+.++ +.++|.||
T Consensus 17 ~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~---~-------~~~i~gd---------~~~~~~l~~a~i~~ad~vi 76 (234)
T 2aef_A 17 WSESTLECLRELRGSEV-FVLAEDENVRKKVLRS---G-------ANFVHGD---------PTRVSDLEKANVRGARAVI 76 (234)
T ss_dssp CCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHT---T-------CEEEESC---------TTCHHHHHHTTCTTCSEEE
T ss_pred CChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhc---C-------CeEEEcC---------CCCHHHHHhcCcchhcEEE
Confidence 58899999999998999 9999999987654320 0 0001111 0001223333 78999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCC-cEEE
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSN-TILS 228 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~-~ii~ 228 (290)
-+++.+.. ........+.+.++ .+++
T Consensus 77 ~~~~~d~~--n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 77 VDLESDSE--TIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp ECCSCHHH--HHHHHHHHHHHCSSSEEEE
T ss_pred EcCCCcHH--HHHHHHHHHHHCCCCeEEE
Confidence 99997642 22333344445555 5555
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=88.49 E-value=0.41 Score=43.62 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=28.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 154 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~ 154 (290)
+|.+|..++..+...|..|..+|++++.++.+.
T Consensus 180 aG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~ 212 (384)
T 1l7d_A 180 VGVAGLQAIATAKRLGAVVMATDVRAATKEQVE 212 (384)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 699999999999999999999999987766543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=88.33 E-value=0.56 Score=41.15 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=32.9
Q ss_pred cHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEEeec
Q psy17416 3 VLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTILSSS 45 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~~sn 45 (290)
|. +++++||+||.++. +|..+++++++++.++ .+++++.+-
T Consensus 69 ~~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~ 123 (319)
T 1lld_A 69 DP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLI 123 (319)
T ss_dssp CG-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred CH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEe
Confidence 44 57899999999992 4578899999999997 678877543
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=88.26 E-value=0.58 Score=41.08 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=55.4
Q ss_pred eeeEEecccchhHHHHHHHHHHc-Ccee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASA-GYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~-G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
-|+++ +|.||...+..+.+. ++++ .++|++++..++..+ .+...+++++
T Consensus 13 igiIG---~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~--------------------------~~~~~~~~~~ 63 (315)
T 3c1a_A 13 LALIG---AGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP--------------------------GCVIESDWRS 63 (315)
T ss_dssp EEEEE---CTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT--------------------------TCEEESSTHH
T ss_pred EEEEC---CcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh--------------------------hCcccCCHHH
Confidence 35565 688888888777764 6765 589999875432111 0223567777
Q ss_pred hcc--cCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHH
Q psy17416 192 CLE--DAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPS 237 (290)
Q Consensus 192 ~l~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~ 237 (290)
.++ ++|+|+.|+|..... ++..+. +..+. ++.-...+.+..
T Consensus 64 ~l~~~~~D~V~i~tp~~~h~--~~~~~a---l~~Gk~v~~eKP~~~~~~ 107 (315)
T 3c1a_A 64 VVSAPEVEAVIIATPPATHA--EITLAA---IASGKAVLVEKPLTLDLA 107 (315)
T ss_dssp HHTCTTCCEEEEESCGGGHH--HHHHHH---HHTTCEEEEESSSCSCHH
T ss_pred HhhCCCCCEEEEeCChHHHH--HHHHHH---HHCCCcEEEcCCCcCCHH
Confidence 775 799999999977643 444332 33444 444334444544
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=88.15 E-value=0.99 Score=40.88 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHH-hCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHH
Q psy17416 86 WTSERVITRTREIMTE-IGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENA 153 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~-lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a 153 (290)
.|.-.+...+.++++. +|...+ .+..-++++ +|.+|..+|..+...|.+|+++|++++.+++.
T Consensus 149 aTg~GV~~~~~~~~~~~~G~~~L--~GktV~V~G---~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~ 212 (364)
T 1leh_A 149 VTAYGVYRGMKAAAKEAFGSDSL--EGLAVSVQG---LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA 212 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCC--TTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhccccCC--CcCEEEEEC---chHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 4555666677777777 463111 122233343 69999999999999999999999998766543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=88.07 E-value=0.88 Score=39.47 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHHH-cCceeEE-ecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFAS-AGYKVSL-YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~-~G~~V~l-~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.||+.++..+.. .++++.. +|+++... .|.-.+.+.. ....+..++|+++.+.++|+|
T Consensus 16 ~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~----------------~G~d~gel~g--~~~gv~v~~dl~~ll~~~DVV 77 (272)
T 4f3y_A 16 SGRMGRMLIEAVLAAPDATLVGALDRTGSPQ----------------LGQDAGAFLG--KQTGVALTDDIERVCAEADYL 77 (272)
T ss_dssp TSHHHHHHHHHHHHCTTEEEEEEBCCTTCTT----------------TTSBTTTTTT--CCCSCBCBCCHHHHHHHCSEE
T ss_pred CCHHHHHHHHHHHhCCCCEEEEEEEecCccc----------------ccccHHHHhC--CCCCceecCCHHHHhcCCCEE
Confidence 58899999987765 4677654 78764321 0110111100 012455678999988999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 238 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 238 (290)
|++.+.. ..+..+...+..+.-+++.|.+++..+
T Consensus 78 IDfT~p~-----a~~~~~~~al~~G~~vVigTTG~s~~~ 111 (272)
T 4f3y_A 78 IDFTLPE-----GTLVHLDAALRHDVKLVIGTTGFSEPQ 111 (272)
T ss_dssp EECSCHH-----HHHHHHHHHHHHTCEEEECCCCCCHHH
T ss_pred EEcCCHH-----HHHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 9988732 233334444556666666777777653
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=88.05 E-value=1.1 Score=34.63 Aligned_cols=75 Identities=8% Similarity=-0.025 Sum_probs=49.4
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEc
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQES 202 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlViea 202 (290)
|.+|..++..+.+.||+ +|+++|.... + ...++....++.+.-...|+++.+
T Consensus 26 g~~G~~~~~~l~~~G~~--v~~vnp~~~~---~-----------------------~i~G~~~~~sl~el~~~vDlavi~ 77 (140)
T 1iuk_A 26 SRPAHYVPRYLREQGYR--VLPVNPRFQG---E-----------------------ELFGEEAVASLLDLKEPVDILDVF 77 (140)
T ss_dssp TSHHHHHHHHHHHTTCE--EEEECGGGTT---S-----------------------EETTEECBSSGGGCCSCCSEEEEC
T ss_pred CChHHHHHHHHHHCCCE--EEEeCCCccc---C-----------------------cCCCEEecCCHHHCCCCCCEEEEE
Confidence 67888998899999997 6777774200 0 012345567777766689999999
Q ss_pred cccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 203 VPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 203 vpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+|.. .-.+++.++.+.-.. .++.
T Consensus 78 vp~~--~~~~v~~~~~~~gi~-~i~~ 100 (140)
T 1iuk_A 78 RPPS--ALMDHLPEVLALRPG-LVWL 100 (140)
T ss_dssp SCHH--HHTTTHHHHHHHCCS-CEEE
T ss_pred eCHH--HHHHHHHHHHHcCCC-EEEE
Confidence 9964 355667666554333 4443
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=1.6 Score=38.69 Aligned_cols=70 Identities=16% Similarity=0.060 Sum_probs=48.7
Q ss_pred eeEEecccchhHHHHHHHHH-H-cCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFA-S-AGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~-~-~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ +|.||...+..+. . .++++. ++|++++..++..+. .|. ....++|+++
T Consensus 6 giIG---~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------~g~------------~~~~~~~~~~ 60 (344)
T 3mz0_A 6 GVIG---TGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------YQL------------NATVYPNDDS 60 (344)
T ss_dssp EEEC---CSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------TTC------------CCEEESSHHH
T ss_pred EEEC---ccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC------------CCeeeCCHHH
Confidence 4555 6889998888887 4 477765 789999876654431 111 1234678888
Q ss_pred hccc--CcEEEEccccchHH
Q psy17416 192 CLED--AIFIQESVPEILQI 209 (290)
Q Consensus 192 ~l~~--aDlVieavpe~~~~ 209 (290)
.+++ +|+|+.|+|.....
T Consensus 61 ll~~~~~D~V~i~tp~~~h~ 80 (344)
T 3mz0_A 61 LLADENVDAVLVTSWGPAHE 80 (344)
T ss_dssp HHHCTTCCEEEECSCGGGHH
T ss_pred HhcCCCCCEEEECCCchhHH
Confidence 7765 99999999977753
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=87.85 E-value=0.48 Score=42.71 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=54.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccc-cCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLIS-GTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~-~~~~l~~~l~~aDlVi 200 (290)
+|.+|..++..+...|.+|+++|++++.++.+.+..... . ..+. -..++.+.+.++|+||
T Consensus 175 aGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 175 GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR-------------V------ELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG-------------S------EEEECCHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCce-------------e------EeeeCCHHHHHHHHcCCCEEE
Confidence 488999999999999999999999998877655421100 0 0000 0124555677999999
Q ss_pred EccccchHHHHH-HHHHHhhhCCCCcEEE
Q psy17416 201 ESVPEILQIKHQ-VYRAIDIFMSSNTILS 228 (290)
Q Consensus 201 eavpe~~~~k~~-~~~~l~~~~~~~~ii~ 228 (290)
.|++-....... +.++..+.++++.+++
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~iv 264 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIV 264 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEE
Confidence 999643210000 1233344567777665
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=87.34 E-value=1.1 Score=36.38 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=26.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIE 151 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~ 151 (290)
.|.+|+.++..++..|++|.+.+++++.+.
T Consensus 9 tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (221)
T 3ew7_A 9 TGRAGSRILEEAKNRGHEVTAIVRNAGKIT 38 (221)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCSHHHH
T ss_pred CchhHHHHHHHHHhCCCEEEEEEcCchhhh
Confidence 478899999999999999999999987643
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=87.25 E-value=0.8 Score=40.62 Aligned_cols=110 Identities=9% Similarity=0.090 Sum_probs=68.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC-------------------hH-HHhcccCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL-------------------PS-VLSEHSTHR 61 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~-------------------~~-~l~~~~~~~ 61 (290)
+|+++ ++++|+||-|++- ..++ ++++++...+++++++.|.+.+++ .. .+++.++ +
T Consensus 63 ~~~~~-~~~~D~Vilavk~-~~~~-~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~ 138 (335)
T 3ghy_A 63 HDAAA-LGEQDVVIVAVKA-PALE-SVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-T 138 (335)
T ss_dssp SCHHH-HCCCSEEEECCCH-HHHH-HHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-G
T ss_pred CCHHH-cCCCCEEEEeCCc-hhHH-HHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC-c
Confidence 46665 6899999999998 3555 888999999999999988777753 12 3555553 3
Q ss_pred Ccee-ee-----ccCCCCCCC--CeeeEeeCCC--CCHHHHHHHHHHHHHhCCccEEEeccceee
Q psy17416 62 SQFI-VA-----HPVNPPYFI--PLVEIVPAAW--TSERVITRTREIMTEIGMKPVTLTTEIRGF 116 (290)
Q Consensus 62 ~r~~-g~-----hf~~P~~~~--~lvEiv~~~~--t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf 116 (290)
++++ |+ ....|-... ..-.+.-|.. .+.+..+...+++..-|...... .|..+.
T Consensus 139 ~~v~~gv~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~-~di~~~ 202 (335)
T 3ghy_A 139 RHVLGCVVHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECS-EAIQRD 202 (335)
T ss_dssp GGEEEEEECCCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEEC-SCHHHH
T ss_pred ccEEEEEEEEEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeC-chHHHH
Confidence 4554 22 222232210 0012344432 23566788888888888755443 565553
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.45 E-value=1.7 Score=36.90 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=50.7
Q ss_pred cchhHHHHHHHHHHcCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.||+.++..+...+.++. .+|++++. . .++..++|+++.+ ++|+||
T Consensus 11 aGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~-------------------------~gv~v~~dl~~l~-~~DVvI 59 (243)
T 3qy9_A 11 YGAMNQRVARLAEEKGHEIVGVIENTPKA-----T-------------------------TPYQQYQHIADVK-GADVAI 59 (243)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECSSCC--------------------------------CCSCBCSCTTTCT-TCSEEE
T ss_pred cCHHHHHHHHHHHhCCCEEEEEEecCccc-----c-------------------------CCCceeCCHHHHh-CCCEEE
Confidence 38999999988887765654 47877641 0 1233467788777 999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHH
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 238 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 238 (290)
+.... ..++..+. +..+.-+++.|++++.++
T Consensus 60 Dft~p-----~a~~~~~~--l~~g~~vVigTTG~s~e~ 90 (243)
T 3qy9_A 60 DFSNP-----NLLFPLLD--EDFHLPLVVATTGEKEKL 90 (243)
T ss_dssp ECSCH-----HHHHHHHT--SCCCCCEEECCCSSHHHH
T ss_pred EeCCh-----HHHHHHHH--HhcCCceEeCCCCCCHHH
Confidence 75542 12233333 666766667777887643
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=86.43 E-value=0.85 Score=39.71 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=44.5
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-+|+.++..+...|. +|.+++++++..++..+.+.. .+ .+.. .++++...++|+||
T Consensus 134 aGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~-------~~-------------~~~~-~~~~~l~~~aDiII 192 (281)
T 3o8q_A 134 AGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAA-------YG-------------EVKA-QAFEQLKQSYDVII 192 (281)
T ss_dssp CSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGG-------GS-------------CEEE-EEGGGCCSCEEEEE
T ss_pred chHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhc-------cC-------------CeeE-eeHHHhcCCCCEEE
Confidence 57889999999999996 999999999876654442211 00 0111 13333336899999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|+|...
T Consensus 193 naTp~gm 199 (281)
T 3o8q_A 193 NSTSASL 199 (281)
T ss_dssp ECSCCCC
T ss_pred EcCcCCC
Confidence 9999765
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=86.35 E-value=3.8 Score=35.85 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=42.7
Q ss_pred eeEEecccchhHHH-HHHHHHHc-CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQA-WAMIFASA-GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~-ia~~~~~~-G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||.. .+..+... ++++.++|++++..++..+. .|... .++++ .+.
T Consensus 6 giIG---~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g~~~------------~~~~~-~~~ 59 (323)
T 1xea_A 6 AMIG---LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YRVSA------------TCTDY-RDV 59 (323)
T ss_dssp EEEC---CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TTCCC------------CCSST-TGG
T ss_pred EEEC---CCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cCCCc------------cccCH-HHH
Confidence 4555 6888874 76666653 77877999999876654331 11110 01222 234
Q ss_pred c-ccCcEEEEccccchH
Q psy17416 193 L-EDAIFIQESVPEILQ 208 (290)
Q Consensus 193 l-~~aDlVieavpe~~~ 208 (290)
+ .++|+|+.|+|....
T Consensus 60 l~~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 60 LQYGVDAVMIHAATDVH 76 (323)
T ss_dssp GGGCCSEEEECSCGGGH
T ss_pred hhcCCCEEEEECCchhH
Confidence 4 689999999997663
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=86.34 E-value=1.5 Score=37.56 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
+-+|+++|..|++.|..|.+.|++++.+++..+.++
T Consensus 17 ~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~ 52 (254)
T 4fn4_A 17 SGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR 52 (254)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence 468999999999999999999999999888777654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=0.91 Score=40.11 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=52.1
Q ss_pred CcHHhhcccCcEEEEccc--CC------------hHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHh----ccc----C
Q psy17416 2 PVLRECLEDAIFIQESVP--EI------------LQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS----EHS----T 59 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~--e~------------~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~----~~~----~ 59 (290)
+|+++++++||+|+=++. .. ..+=+++.+.+.+.+ |++++.- . +-|+.-++ ..+ .
T Consensus 60 ~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~-sNPv~~~~~i~~~~~~~~~~ 136 (314)
T 1mld_A 60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICI-I-SNPVNSTIPITAEVFKKHGV 136 (314)
T ss_dssp GGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE-C-SSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-E-CCCcchhHHHHHHHHHHcCC
Confidence 589999999999998762 11 155677788888887 6654443 2 33777554 212 1
Q ss_pred -CCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 60 -HRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 60 -~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
.|.|++|+ |.-+.......+++.+|..|
T Consensus 137 ~p~~rvig~-------------------t~Ld~~r~~~~la~~l~v~~ 165 (314)
T 1mld_A 137 YNPNKIFGV-------------------TTLDIVRANAFVAELKGLDP 165 (314)
T ss_dssp CCTTSEEEC-------------------CHHHHHHHHHHHHHHTTCCG
T ss_pred CCcceEEEe-------------------ecccHHHHHHHHHHHhCcCh
Confidence 24555554 33345555666777788654
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=85.97 E-value=1.6 Score=37.14 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=49.2
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCH-------------------HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhc
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLS-------------------EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFG 181 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~-------------------e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 181 (290)
+|.+|..++..++..|. +++++|.+. ...+.+.+++.... ..........
T Consensus 39 ~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n----------p~~~v~~~~~ 108 (249)
T 1jw9_B 39 LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN----------PHIAITPVNA 108 (249)
T ss_dssp CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC----------TTSEEEEECS
T ss_pred eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC----------CCcEEEEEec
Confidence 68899999999999997 899999886 44444444443220 0000000001
Q ss_pred ccccCCchHhhcccCcEEEEccccchHHHHHHHHH
Q psy17416 182 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA 216 (290)
Q Consensus 182 ~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~ 216 (290)
.+. ..++.+.++++|+||.|+. +.+.+..+.+.
T Consensus 109 ~~~-~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~ 141 (249)
T 1jw9_B 109 LLD-DAELAALIAEHDLVLDCTD-NVAVRNQLNAG 141 (249)
T ss_dssp CCC-HHHHHHHHHTSSEEEECCS-SHHHHHHHHHH
T ss_pred cCC-HhHHHHHHhCCCEEEEeCC-CHHHHHHHHHH
Confidence 111 1234556789999999985 55555544443
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=85.97 E-value=1.1 Score=39.45 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=98.6
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC--
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA-- 84 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~-- 84 (290)
+...-..||+.. ..++++.|+++-.+ |-|+..-- .++.-..+...+.--..+=|+|.+|=.. +..+
T Consensus 68 ~~~~~~lp~~~s-~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~------l~~g~~ 140 (300)
T 4a26_A 68 ASFNVELPEDIS-QEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGL------LHYKGR 140 (300)
T ss_dssp EEEEEEECTTCC-HHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHH------HHCTTC
T ss_pred eEEEEECCCCCC-HHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEE------eecCCC
Confidence 344445566553 35788888877544 34555443 5566677777776556666888766332 1122
Q ss_pred -CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHH
Q psy17416 85 -AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQD 163 (290)
Q Consensus 85 -~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~ 163 (290)
+.--+.|-..+.+++++.+. .+ ....-.++.| .+.+|+.+|.++.+.|..|++.++..
T Consensus 141 ~~~~~PcTp~gv~~lL~~~~i---~l-~Gk~vvVIG~-s~iVG~p~A~lL~~~gAtVtv~~~~T---------------- 199 (300)
T 4a26_A 141 EPPFTPCTAKGVIVLLKRCGI---EM-AGKRAVVLGR-SNIVGAPVAALLMKENATVTIVHSGT---------------- 199 (300)
T ss_dssp CCSCCCHHHHHHHHHHHHHTC---CC-TTCEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTTS----------------
T ss_pred cCCCCCCCHHHHHHHHHHcCC---CC-CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCC----------------
Confidence 12235566667777777653 11 2223334433 45689999999999999999998622
Q ss_pred HHHcCCCCCCCChhhhhcccccCCchH--hhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 164 YHQKGCLKGSLSPEEQFGLISGTPVLR--ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 164 ~~~~g~~~~~~~~~~~~~~i~~~~~l~--~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+++ +.+++||+||-|++..--++. ..++++++++
T Consensus 200 -----------------------~~l~l~~~~~~ADIVI~Avg~p~~I~~-------~~vk~GavVI 236 (300)
T 4a26_A 200 -----------------------STEDMIDYLRTADIVIAAMGQPGYVKG-------EWIKEGAAVV 236 (300)
T ss_dssp -----------------------CHHHHHHHHHTCSEEEECSCCTTCBCG-------GGSCTTCEEE
T ss_pred -----------------------CCchhhhhhccCCEEEECCCCCCCCcH-------HhcCCCcEEE
Confidence 1233 568899999999985432222 3468999887
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.89 E-value=0.38 Score=39.58 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=42.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.++..+...|++|.+.+++++..... .... .-....+.-..++.++++++|.||-
T Consensus 13 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----------------~~~~--~~~~~Dl~d~~~~~~~~~~~d~vi~ 73 (227)
T 3dhn_A 13 SGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-----------------NEHL--KVKKADVSSLDEVCEVCKGADAVIS 73 (227)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC-----------------CTTE--EEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred CchHHHHHHHHHHHCCCEEEEEEcCcccchhc-----------------cCce--EEEEecCCCHHHHHHHhcCCCEEEE
Confidence 47889999999999999999999997643210 0000 0001111112345667889999998
Q ss_pred cccc
Q psy17416 202 SVPE 205 (290)
Q Consensus 202 avpe 205 (290)
+...
T Consensus 74 ~a~~ 77 (227)
T 3dhn_A 74 AFNP 77 (227)
T ss_dssp CCCC
T ss_pred eCcC
Confidence 8754
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=0.22 Score=46.85 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCcHHhhcccCcEEEEccc---------------------CC---------------------------hHHHHHHHHHH
Q psy17416 1 TPVLRECLEDAIFIQESVP---------------------EI---------------------------LQIKHQVYRAI 32 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~---------------------e~---------------------------~~~K~~~~~~~ 32 (290)
|+|+++|++|||+||=++- ++ +.+=.++-+++
T Consensus 67 t~d~~eAl~gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i 146 (477)
T 3u95_A 67 TESLDEAIEGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKM 146 (477)
T ss_dssp ESCHHHHHTTCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHH
T ss_pred eCCHHHHhCCCCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHH
Confidence 5899999999999998752 21 22226889999
Q ss_pred HhhcCCCcEEeecCCCCChHHHhcccC--CCCceeeec
Q psy17416 33 DIFMSSNTILSSSTSSFLPSVLSEHST--HRSQFIVAH 68 (290)
Q Consensus 33 ~~~~~~~~i~~snts~~~~~~l~~~~~--~~~r~~g~h 68 (290)
.++| ||+++- |-|| |.+.+..++. -+.|++|+.
T Consensus 147 ~~~~-P~A~~i-n~tN-P~~i~t~a~~~~~~~k~vGlC 181 (477)
T 3u95_A 147 KKMA-PKAYLM-QTAN-PVFEITQAVRRWTGANIIGFC 181 (477)
T ss_dssp HHHC-TTCEEE-ECSS-CHHHHHHHHHHHHCCCEEEEC
T ss_pred HhhC-CCeEEE-EecC-hHHHHHHHHHHhCCCCeEEEC
Confidence 9998 567554 2222 5555554442 146788874
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.19 E-value=0.89 Score=40.29 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=36.1
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeec
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 45 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~sn 45 (290)
+|++++++++|+||.|++.... .++++++...+++++++.+.
T Consensus 67 ~~~~~~~~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 67 SDIGLAVKDADVILIVVPAIHH--ASIAANIASYISEGQLIILN 108 (359)
T ss_dssp SCHHHHHTTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEES
T ss_pred CCHHHHHhcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEc
Confidence 5788889999999999999875 68899999999999966655
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=1.8 Score=33.55 Aligned_cols=94 Identities=7% Similarity=-0.034 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEc
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQES 202 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlViea 202 (290)
|.+|..++..+.+.|++ +|+++|.. + ...++....++.+.....|+++.+
T Consensus 35 g~~G~~~~~~l~~~G~~--v~~Vnp~~-----~-----------------------~i~G~~~y~sl~~l~~~vDlvvi~ 84 (144)
T 2d59_A 35 ERDANIVMKYLLEHGYD--VYPVNPKY-----E-----------------------EVLGRKCYPSVLDIPDKIEVVDLF 84 (144)
T ss_dssp TSHHHHHHHHHHHTTCE--EEEECTTC-----S-----------------------EETTEECBSSGGGCSSCCSEEEEC
T ss_pred CchHHHHHHHHHHCCCE--EEEECCCC-----C-----------------------eECCeeccCCHHHcCCCCCEEEEE
Confidence 67888888888899997 56666641 1 012334556777766689999999
Q ss_pred cccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCC-CCCcEEE
Q psy17416 203 VPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST-HRSQFIV 251 (290)
Q Consensus 203 vpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~-~~~r~ig 251 (290)
+|.. .-.+++.++.+.- ...++.. .+ ..-.++.+... .--|++|
T Consensus 85 vp~~--~~~~vv~~~~~~g-i~~i~~~-~g-~~~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 85 VKPK--LTMEYVEQAIKKG-AKVVWFQ-YN-TYNREASKKADEAGLIIVA 129 (144)
T ss_dssp SCHH--HHHHHHHHHHHHT-CSEEEEC-TT-CCCHHHHHHHHHTTCEEEE
T ss_pred eCHH--HHHHHHHHHHHcC-CCEEEEC-CC-chHHHHHHHHHHcCCEEEc
Confidence 9964 3567777665542 3355543 22 23344444332 2235554
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=84.90 E-value=2.6 Score=37.33 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=29.4
Q ss_pred ccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 121 IHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 121 i~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
-.|.+|..+++.+...|.+|+..+.+++.++.+.+
T Consensus 159 g~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 193 (346)
T 3fbg_A 159 GAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK 193 (346)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 36888988888888889999999999988776654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=84.88 E-value=0.76 Score=40.83 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=52.0
Q ss_pred CcHHhhcccCcEEEEccc--CC------------hHHHHHHHHHHHhhcCCCcEEeecCCCCChHH----Hhccc----C
Q psy17416 2 PVLRECLEDAIFIQESVP--EI------------LQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV----LSEHS----T 59 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~--e~------------~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~----l~~~~----~ 59 (290)
+|+++++++||+||=++. .. .++=+++.+.+.+.+ |++++.. +|-|+.- ++..+ .
T Consensus 68 ~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv--~SNPv~~~~~~~t~~~~~~~~ 144 (326)
T 1smk_A 68 QQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNL--ISNPVNSTVPIAAEVFKKAGT 144 (326)
T ss_dssp HHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEE--CCSSHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE--ECCchHHHHHHHHHHHHHccC
Confidence 478899999999999874 11 155667778888887 5655544 3457776 43322 1
Q ss_pred -CCCceeeeccCCCCCCCCeeeEeeCCCCCHHHHHHHHHHHHHhCCcc
Q psy17416 60 -HRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKP 106 (290)
Q Consensus 60 -~~~r~~g~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~ 106 (290)
.|.|++|+ |.-+.......+++.+|..|
T Consensus 145 ~p~~rviG~-------------------~~Ld~~r~~~~la~~l~v~~ 173 (326)
T 1smk_A 145 YDPKRLLGV-------------------TMLDVVRANTFVAEVLGLDP 173 (326)
T ss_dssp CCTTSEEEC-------------------CHHHHHHHHHHHHHHHTCCG
T ss_pred CCcccEEEE-------------------eehHHHHHHHHHHHHhCcCh
Confidence 13455554 33345555666777788654
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=84.59 E-value=0.36 Score=42.34 Aligned_cols=106 Identities=11% Similarity=0.090 Sum_probs=69.4
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccCCCCceeeeccCC-CCCCC-
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVN-PPYFI- 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~~~~r~~g~hf~~-P~~~~- 76 (290)
++++|+++++|+||=++|.+-.++.-++..+-....++.|+.- +||.++. ++++.+.. -|.||.- |+.--
T Consensus 53 ~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid-~sT~~p~~~~~~~~~~~~----~g~~~ldapVsGg~ 127 (297)
T 4gbj_A 53 ENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVS-MSTISPETSRQLAQVHEW----YGAHYVGAPIFARP 127 (297)
T ss_dssp SSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEE-CSCCCHHHHHHHHHHHHH----TTCEEEECCEECCH
T ss_pred CCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEE-CCCCChHHHHHHHHHHHh----cCCceecCCcCCCc
Confidence 5788999999999999999988887777777777788876653 3333444 55554421 1444432 22110
Q ss_pred -----CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEecccee
Q psy17416 77 -----PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 115 (290)
Q Consensus 77 -----~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~g 115 (290)
...-++.| -+++.++.+..++..+|+..+.+ .+.+|
T Consensus 128 ~~a~~g~l~im~g--G~~~~~~~~~~~l~~~g~~i~~~-g~~~G 168 (297)
T 4gbj_A 128 EAVRAKVGNICLS--GNAGAKERIKPIVENFVKGVFDF-GDDPG 168 (297)
T ss_dssp HHHHHTCCEEEEE--ECHHHHHHHHHHHHTTCSEEEEC-CSCTT
T ss_pred cccccccceeecc--cchhHHHHHHHHHHHhhCCeEEe-cCCcc
Confidence 11123333 36889999999999999976666 44443
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=84.34 E-value=2.1 Score=37.37 Aligned_cols=159 Identities=13% Similarity=0.134 Sum_probs=98.8
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCCC
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAW 86 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~~ 86 (290)
+...-..||+.. ..+++..|+++-.+ |-|+..-- .++.-..+...+.--..+=|+|.+|=..+ ..+..
T Consensus 64 ~~~~~~lp~~~s-~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~~~N~g~l------~~g~~ 136 (285)
T 3p2o_A 64 KSLVYHLNENIT-QNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYL------NLGLE 136 (285)
T ss_dssp EEEEEEECTTCC-HHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCSHHHHHHH------HTTCC
T ss_pred eEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCCHhhhhhh------hcCCC
Confidence 334444555542 24677777666443 34665443 55666777777764456668887763321 12222
Q ss_pred --CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 87 --TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 87 --t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
--+.|-..+.+++++.+. .+ ....-.++.| .+..|+.+|+++.+.|..|++.++.
T Consensus 137 ~g~~PcTp~gv~~lL~~~~i---~l-~Gk~vvVvGr-s~iVG~p~A~lL~~~gAtVtv~h~~------------------ 193 (285)
T 3p2o_A 137 SGFLPCTPLGVMKLLKAYEI---DL-EGKDAVIIGA-SNIVGRPMATMLLNAGATVSVCHIK------------------ 193 (285)
T ss_dssp SSCCCHHHHHHHHHHHHTTC---CC-TTCEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTT------------------
T ss_pred CCCCCCCHHHHHHHHHHhCC---CC-CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCC------------------
Confidence 235666667788887653 12 2233334433 3567999999999999999988631
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++++.+++||+||-|++..--++. +.++++++++
T Consensus 194 ---------------------t~~L~~~~~~ADIVI~Avg~p~~I~~-------~~vk~GavVI 229 (285)
T 3p2o_A 194 ---------------------TKDLSLYTRQADLIIVAAGCVNLLRS-------DMVKEGVIVV 229 (285)
T ss_dssp ---------------------CSCHHHHHTTCSEEEECSSCTTCBCG-------GGSCTTEEEE
T ss_pred ---------------------chhHHHHhhcCCEEEECCCCCCcCCH-------HHcCCCeEEE
Confidence 34667788999999999984422222 4568999887
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=84.27 E-value=7.4 Score=33.55 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=27.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENA 153 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a 153 (290)
.|.+|+.++..++..|++|.+.+++++..+..
T Consensus 20 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 51 (342)
T 1y1p_A 20 NGFVASHVVEQLLEHGYKVRGTARSASKLANL 51 (342)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence 58889999999999999999999998765543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=84.06 E-value=3 Score=37.84 Aligned_cols=96 Identities=20% Similarity=0.076 Sum_probs=51.6
Q ss_pred cchhHHHHHHHHHHcCc-----eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccC
Q psy17416 122 HGLIGQAWAMIFASAGY-----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 196 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-----~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~a 196 (290)
.|.+|..++..++..+. ++.++|.+.+......+...-.+. +.. ......+..+++..+++++|
T Consensus 41 aG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~--------h~~---~p~~~~v~i~~~~y~~~~da 109 (375)
T 7mdh_A 41 AGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELE--------DSL---YPLLREVSIGIDPYEVFEDV 109 (375)
T ss_dssp TSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH--------TTT---CTTEEEEEEESCHHHHTTTC
T ss_pred CChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHH--------hhh---hhhcCCcEEecCCHHHhCCC
Confidence 48899999999988765 266655543222111111111111 010 01123444455555679999
Q ss_pred cEEEEcc--cc------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 197 IFIQESV--PE------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 197 DlVieav--pe------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|+||.+. |- |..+-+.+...+.++..+++++.
T Consensus 110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivl 155 (375)
T 7mdh_A 110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVL 155 (375)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 9999864 21 12334445556777756666665
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=84.04 E-value=3.4 Score=36.03 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=53.5
Q ss_pred eeEEecccchhHHH-HHHHHHH-cCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQA-WAMIFAS-AGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~-ia~~~~~-~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ +|.||.. ++..+.. .|+++. ++|++++..++..+. .| +..++++++
T Consensus 9 giiG---~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g--------------~~~~~~~~~ 61 (319)
T 1tlt_A 9 GVVG---LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----------WR--------------IPYADSLSS 61 (319)
T ss_dssp EEEC---CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----------HT--------------CCBCSSHHH
T ss_pred EEEC---CCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC--------------CCccCcHHH
Confidence 4554 5888886 6666654 477765 899998766543321 11 113456665
Q ss_pred hcccCcEEEEccccchHHHHHHHHHHhhhCCCCc-EEEeCCCCcCHHH
Q psy17416 192 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSV 238 (290)
Q Consensus 192 ~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~ 238 (290)
...++|+|+.|+|..... ++... .+..+. +++--..+.+..+
T Consensus 62 l~~~~D~V~i~tp~~~h~--~~~~~---al~~G~~v~~eKP~~~~~~~ 104 (319)
T 1tlt_A 62 LAASCDAVFVHSSTASHF--DVVST---LLNAGVHVCVDKPLAENLRD 104 (319)
T ss_dssp HHTTCSEEEECSCTTHHH--HHHHH---HHHTTCEEEEESSSCSSHHH
T ss_pred hhcCCCEEEEeCCchhHH--HHHHH---HHHcCCeEEEeCCCCCCHHH
Confidence 446899999999977643 33333 233454 4443334444443
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=83.90 E-value=0.72 Score=41.51 Aligned_cols=67 Identities=25% Similarity=0.281 Sum_probs=44.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.++..+.+ .++|.+.|++.+.++++.+. ... ..-.+.-...+.+.++++|+||.
T Consensus 24 aG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~-----------------~~~--~~~d~~d~~~l~~~~~~~DvVi~ 83 (365)
T 3abi_A 24 AGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF-----------------ATP--LKVDASNFDKLVEVMKEFELVIG 83 (365)
T ss_dssp CSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT-----------------SEE--EECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc-----------------CCc--EEEecCCHHHHHHHHhCCCEEEE
Confidence 57888888887765 68999999999887664330 000 00011112346667899999999
Q ss_pred ccccchH
Q psy17416 202 SVPEILQ 208 (290)
Q Consensus 202 avpe~~~ 208 (290)
|+|..+.
T Consensus 84 ~~p~~~~ 90 (365)
T 3abi_A 84 ALPGFLG 90 (365)
T ss_dssp CCCGGGH
T ss_pred ecCCccc
Confidence 9997763
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=83.74 E-value=3.5 Score=36.14 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=50.3
Q ss_pred cCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhccccc-CCchHhh-cccCcEEEEccccchHHHHHH
Q psy17416 136 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-TPVLREC-LEDAIFIQESVPEILQIKHQV 213 (290)
Q Consensus 136 ~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~l~~~-l~~aDlVieavpe~~~~k~~~ 213 (290)
.|..|+.+|.+++.++.|.+.+++. |. +++++ ..|..+. -...|+|+.+.. ..-|..+
T Consensus 145 ~ga~V~gIDis~~~l~~Ar~~~~~~-------gl-----------~~v~~v~gDa~~l~d~~FDvV~~~a~--~~d~~~~ 204 (298)
T 3fpf_A 145 YGMRVNVVEIEPDIAELSRKVIEGL-------GV-----------DGVNVITGDETVIDGLEFDVLMVAAL--AEPKRRV 204 (298)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHHH-------TC-----------CSEEEEESCGGGGGGCCCSEEEECTT--CSCHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc-------CC-----------CCeEEEECchhhCCCCCcCEEEECCC--ccCHHHH
Confidence 5889999999999999988865542 22 11111 1111110 145799987654 3457789
Q ss_pred HHHHhhhCCCCcEEEeC
Q psy17416 214 YRAIDIFMSSNTILSSS 230 (290)
Q Consensus 214 ~~~l~~~~~~~~ii~s~ 230 (290)
++++.+.++||..++..
T Consensus 205 l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 205 FRNIHRYVDTETRIIYR 221 (298)
T ss_dssp HHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHcCCCcEEEEE
Confidence 99999999998877743
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.04 E-value=0.22 Score=41.11 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=62.2
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCCh--------HHHhcccCCCCceeeeccCCCCC
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP--------SVLSEHSTHRSQFIVAHPVNPPY 74 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~--------~~l~~~~~~~~r~~g~hf~~P~~ 74 (290)
+++++++++|+|+=|++-. .++ +++ ++... .+++++.+-+..++. ..|.+.+.. .+++..=...|+.
T Consensus 66 ~~~~~~~~aDvVilav~~~-~~~-~v~-~l~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~ 140 (201)
T 2yjz_A 66 CYSEAASRSDVIVLAVHRE-HYD-FLA-ELADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAW 140 (201)
Confidence 5677889999999999864 443 344 45443 467888877777763 455555543 3454332333443
Q ss_pred CCC-ee------eEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 75 FIP-LV------EIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 75 ~~~-lv------Eiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
... -. -++.|. +++.++.+..++..+|+.++.+
T Consensus 141 ~~~~g~l~g~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~ 180 (201)
T 2yjz_A 141 ALQSGTLDASRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQ 180 (201)
Confidence 221 11 133332 5778888999999999987765
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=2.5 Score=37.15 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=98.3
Q ss_pred EEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CC--CChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC--
Q psy17416 14 IQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SS--FLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA-- 84 (290)
Q Consensus 14 viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~--~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~-- 84 (290)
.....||+.. ..++++.|+++=.+ |-|+.--- ++ +.-..+...+.--..+=|+|++|-..+. .+
T Consensus 68 ~~~~lp~~~s-~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~N~G~l~------~g~~ 140 (301)
T 1a4i_A 68 THIKLPRTTT-ESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLA------RGDL 140 (301)
T ss_dssp EEEEECTTCC-HHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHHHHH------TTCC
T ss_pred EEEECCCCCC-HHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChhhHHHHh------cCCC
Confidence 3334555532 34666666666322 44655321 34 6677788877655567799987654322 22
Q ss_pred -CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHH
Q psy17416 85 -AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQD 163 (290)
Q Consensus 85 -~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~ 163 (290)
+.--|.|-..+.+++++.+. .+ ....-.++.| ....|+-+|+++...|..|++.+..
T Consensus 141 ~~~~~PcTp~gi~~ll~~~~i---~l-~gk~vvVIG~-s~iVG~p~A~lL~~~gAtVtv~hs~----------------- 198 (301)
T 1a4i_A 141 NDCFIPCTPKGCLELIKETGV---PI-AGRHAVVVGR-SKIVGAPMHDLLLWNNATVTTCHSK----------------- 198 (301)
T ss_dssp SSCCCCHHHHHHHHHHHTTTC---CC-TTCEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTT-----------------
T ss_pred CCCccCchHHHHHHHHHHcCC---CC-CCCEEEEECC-CchHHHHHHHHHHhCCCeEEEEECC-----------------
Confidence 22235677778888887653 12 2223334443 2357999999999999999988621
Q ss_pred HHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 164 YHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 164 ~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++.+.+++||+||-|++..--++.+ .++++++++
T Consensus 199 ----------------------t~~L~~~~~~ADIVI~Avg~p~~I~~~-------~vk~GavVI 234 (301)
T 1a4i_A 199 ----------------------TAHLDEEVNKGDILVVATGQPEMVKGE-------WIKPGAIVI 234 (301)
T ss_dssp ----------------------CSSHHHHHTTCSEEEECCCCTTCBCGG-------GSCTTCEEE
T ss_pred ----------------------cccHHHHhccCCEEEECCCCcccCCHH-------HcCCCcEEE
Confidence 357777899999999999865323322 367899887
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=83.28 E-value=1.4 Score=37.44 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHc--CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~--G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
.|.+|+.++..+... |++|...+++++....... .+.. -....+.-..++.++++++|.|
T Consensus 9 tG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~-----------~~~~-------~~~~D~~d~~~l~~~~~~~d~v 70 (287)
T 2jl1_A 9 TGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD-----------QGVE-------VRHGDYNQPESLQKAFAGVSKL 70 (287)
T ss_dssp TSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH-----------TTCE-------EEECCTTCHHHHHHHTTTCSEE
T ss_pred CchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh-----------cCCe-------EEEeccCCHHHHHHHHhcCCEE
Confidence 478899999999988 9999999998754332111 1100 0001111123456678899999
Q ss_pred EEcccc
Q psy17416 200 QESVPE 205 (290)
Q Consensus 200 ieavpe 205 (290)
|-+...
T Consensus 71 i~~a~~ 76 (287)
T 2jl1_A 71 LFISGP 76 (287)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 987653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=82.74 E-value=0.76 Score=38.25 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.+|+.++..|+..| ++|.+++++++.+..... . ........++-..++.++++++|.||
T Consensus 32 tG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~----------------~--~~~~~~~Dl~d~~~~~~~~~~~D~vv 93 (236)
T 3qvo_A 32 GGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP----------------T--NSQIIMGDVLNHAALKQAMQGQDIVY 93 (236)
T ss_dssp TSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCC----------------T--TEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcHHHHHHHHHHHhCCCceEEEEEcChhhhccccc----------------C--CcEEEEecCCCHHHHHHHhcCCCEEE
Confidence 4788999999999999 999999999864321000 0 00001111221234566788999999
Q ss_pred Ecccc
Q psy17416 201 ESVPE 205 (290)
Q Consensus 201 eavpe 205 (290)
-+...
T Consensus 94 ~~a~~ 98 (236)
T 3qvo_A 94 ANLTG 98 (236)
T ss_dssp EECCS
T ss_pred EcCCC
Confidence 76653
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=82.16 E-value=3.1 Score=37.12 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=48.4
Q ss_pred eeEEecccchhHHHHHHHHH-H-cCceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQAWAMIFA-S-AGYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~-~-~G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ +|.||...+..+. . .|+++. ++|++++..++..+. .|. .....+++++
T Consensus 27 giIG---~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~------------~~~~~~~~~~ 81 (357)
T 3ec7_A 27 GIVG---IGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------YAI------------EAKDYNDYHD 81 (357)
T ss_dssp EEEC---CSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------HTC------------CCEEESSHHH
T ss_pred EEEC---CcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------hCC------------CCeeeCCHHH
Confidence 5555 6889998888777 3 477765 799999876654431 111 1234578888
Q ss_pred hcc--cCcEEEEccccchHH
Q psy17416 192 CLE--DAIFIQESVPEILQI 209 (290)
Q Consensus 192 ~l~--~aDlVieavpe~~~~ 209 (290)
.++ +.|+|+.|+|.....
T Consensus 82 ll~~~~~D~V~i~tp~~~h~ 101 (357)
T 3ec7_A 82 LINDKDVEVVIITASNEAHA 101 (357)
T ss_dssp HHHCTTCCEEEECSCGGGHH
T ss_pred HhcCCCCCEEEEcCCcHHHH
Confidence 776 589999999987753
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=82.15 E-value=3.3 Score=35.44 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|.+|+.++..++..|.+|.+++++++..++..+
T Consensus 127 aGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~ 160 (271)
T 1nyt_A 127 AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK 160 (271)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 4779999999999999999999999987655443
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=82.12 E-value=24 Score=31.70 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCC-------HHHHHHHHHHHHHHHH
Q psy17416 90 RVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVL-------SEQIENAKNTIQHTLQ 162 (290)
Q Consensus 90 ~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~-------~e~l~~a~~~i~~~~~ 162 (290)
+++..+.-+.+..|+ +.+-.-+|++.-- ..+.++++..++..|.+|.+.... ++-++.+.+..++.
T Consensus 163 QaLaDl~Ti~E~~G~----l~glkva~vGD~~-nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~-- 235 (365)
T 4amu_A 163 QIIADFMTMKEKFGN----LKNKKIVFIGDYK-NNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRN-- 235 (365)
T ss_dssp HHHHHHHHHHHHHSS----CTTCEEEEESSTT-SHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEEECCCC-cchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHc--
Confidence 566666666666663 1111122333211 135678888888889999887643 33333333211110
Q ss_pred HHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 163 DYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+ ..++.++|+++++++||+|.-
T Consensus 236 ---------g--------~~i~~~~d~~eav~~aDVVyt 257 (365)
T 4amu_A 236 ---------G--------GSLRFSTDKILAAQDADVIYT 257 (365)
T ss_dssp ---------S--------CEEEEESCHHHHTTTCSEEEE
T ss_pred ---------C--------CEEEEECCHHHHhcCCCEEEe
Confidence 1 346678999999999999985
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=82.06 E-value=1.3 Score=37.46 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=29.0
Q ss_pred eEEecccchhHHHHHHHHHHcCceeEEecCC
Q psy17416 116 FALNRIHGLIGQAWAMIFASAGYKVSLYDVL 146 (290)
Q Consensus 116 f~~nri~G~~g~~ia~~~~~~G~~V~l~d~~ 146 (290)
|+.||=.|.||.++|..++..|++|+++.+.
T Consensus 22 ~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~ 52 (232)
T 2gk4_A 22 SITNHSTGHLGKIITETLLSAGYEVCLITTK 52 (232)
T ss_dssp EEEECCCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred eccCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 8999999999999999999999999998764
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=82.06 E-value=2.3 Score=37.09 Aligned_cols=158 Identities=14% Similarity=0.145 Sum_probs=98.4
Q ss_pred EEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC-CC
Q psy17416 13 FIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA-AW 86 (290)
Q Consensus 13 ~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~-~~ 86 (290)
...-..||+.. ..+++..|+++-.+ |-|+..-- .++.-..+...+.--..+=|+|.+|=..+. .| +.
T Consensus 67 ~~~~~lp~~~s-~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~g~l~------~g~~~ 139 (286)
T 4a5o_A 67 SQAYDLPAETS-QDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLA------QRMPL 139 (286)
T ss_dssp EEEEEECTTCC-HHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHH------TTCCS
T ss_pred EEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhhHHHh------cCCCC
Confidence 34444555542 35777777777544 34555443 456666777777644566688877633211 11 22
Q ss_pred CCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHH
Q psy17416 87 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQ 166 (290)
Q Consensus 87 t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~ 166 (290)
--+.|-..+.+++++.+. .+ ....-.++.| .+..|+.+|+++.+.|..|++..+.
T Consensus 140 ~~PcTp~gv~~lL~~~~i---~l-~Gk~vvVvGr-s~iVG~plA~lL~~~gAtVtv~hs~-------------------- 194 (286)
T 4a5o_A 140 LRPCTPKGIMTLLASTGA---DL-YGMDAVVVGA-SNIVGRPMALELLLGGCTVTVTHRF-------------------- 194 (286)
T ss_dssp SCCHHHHHHHHHHHHTTC---CC-TTCEEEEECT-TSTTHHHHHHHHHHTTCEEEEECTT--------------------
T ss_pred CCCCCHHHHHHHHHHhCC---CC-CCCEEEEECC-CchhHHHHHHHHHHCCCeEEEEeCC--------------------
Confidence 235666667777887653 11 2223334433 3568999999999999999987531
Q ss_pred cCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 167 KGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 167 ~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++++.+++||+||-|++..--++. +.++++++++
T Consensus 195 -------------------T~~L~~~~~~ADIVI~Avg~p~~I~~-------~~vk~GavVI 230 (286)
T 4a5o_A 195 -------------------TRDLADHVSRADLVVVAAGKPGLVKG-------EWIKEGAIVI 230 (286)
T ss_dssp -------------------CSCHHHHHHTCSEEEECCCCTTCBCG-------GGSCTTCEEE
T ss_pred -------------------CcCHHHHhccCCEEEECCCCCCCCCH-------HHcCCCeEEE
Confidence 34667788999999999985432222 3468999887
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=82.04 E-value=1.4 Score=37.84 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc-cCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE-DAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~-~aDlVi 200 (290)
+|.+|+.++..++..|.+|++++++++..++..+.+.. .+ .+. ..++++..+ ++|+||
T Consensus 127 aGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~-------~~-------------~~~-~~~~~~~~~~~~DivI 185 (272)
T 1p77_A 127 AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP-------YG-------------NIQ-AVSMDSIPLQTYDLVI 185 (272)
T ss_dssp CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-------GS-------------CEE-EEEGGGCCCSCCSEEE
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccc-------cC-------------CeE-EeeHHHhccCCCCEEE
Confidence 57789999999999999999999999876554432210 00 011 122333223 899999
Q ss_pred Eccccch
Q psy17416 201 ESVPEIL 207 (290)
Q Consensus 201 eavpe~~ 207 (290)
-|+|...
T Consensus 186 n~t~~~~ 192 (272)
T 1p77_A 186 NATSAGL 192 (272)
T ss_dssp ECCCC--
T ss_pred ECCCCCC
Confidence 9999655
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=82.00 E-value=2.5 Score=36.81 Aligned_cols=159 Identities=12% Similarity=0.085 Sum_probs=99.2
Q ss_pred cEEEEcccCChHHHHHHHHHHHhhcCC---CcEEeecC--CCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC--
Q psy17416 12 IFIQESVPEILQIKHQVYRAIDIFMSS---NTILSSST--SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA-- 84 (290)
Q Consensus 12 d~viea~~e~~~~K~~~~~~~~~~~~~---~~i~~snt--s~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~-- 84 (290)
+...-..||+.. ..+++..|+++-.+ |-|+..-- .++.-..+...+.--..+=|+|.+|=.. +..+
T Consensus 65 ~~~~~~lp~~~s-~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~~~N~G~------l~~g~~ 137 (285)
T 3l07_A 65 DSQVITLPEHTT-ESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGR------LQLRDK 137 (285)
T ss_dssp EEEEEEECTTCC-HHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHHHH------HHHTCT
T ss_pred eEEEEECCCCCC-HHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCChhheee------hhcCCC
Confidence 344445555543 34677777777544 34555443 5566677777776556666888766332 1122
Q ss_pred CCCCHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHH
Q psy17416 85 AWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 85 ~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~ 164 (290)
+.--+.|-..+.+++++.+. .+ ....-.++.| .+..|+.+|+++...|..|++..+.
T Consensus 138 ~~~~PcTp~gv~~lL~~~~i---~l-~Gk~vvVIG~-s~iVG~p~A~lL~~~gAtVtv~hs~------------------ 194 (285)
T 3l07_A 138 KCLESCTPKGIMTMLREYGI---KT-EGAYAVVVGA-SNVVGKPVSQLLLNAKATVTTCHRF------------------ 194 (285)
T ss_dssp TCCCCHHHHHHHHHHHHTTC---CC-TTCEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTT------------------
T ss_pred CCCCCCCHHHHHHHHHHhCC---CC-CCCEEEEECC-CchhHHHHHHHHHHCCCeEEEEeCC------------------
Confidence 22235666677778887653 12 2223334433 3567999999999999999888531
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++++.+++||+||-|++..--++. +.++++++++
T Consensus 195 ---------------------t~~L~~~~~~ADIVI~Avg~p~~I~~-------~~vk~GavVI 230 (285)
T 3l07_A 195 ---------------------TTDLKSHTTKADILIVAVGKPNFITA-------DMVKEGAVVI 230 (285)
T ss_dssp ---------------------CSSHHHHHTTCSEEEECCCCTTCBCG-------GGSCTTCEEE
T ss_pred ---------------------chhHHHhcccCCEEEECCCCCCCCCH-------HHcCCCcEEE
Confidence 34667788999999999984422222 3468899886
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=81.62 E-value=2.2 Score=37.29 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=98.6
Q ss_pred ccCChHHHHHHHHHHHhhcCC---CcEEeec--CCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeC-CCCCHHH
Q psy17416 18 VPEILQIKHQVYRAIDIFMSS---NTILSSS--TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPA-AWTSERV 91 (290)
Q Consensus 18 ~~e~~~~K~~~~~~~~~~~~~---~~i~~sn--ts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~-~~t~~~~ 91 (290)
.||+.. ..++++.|+++-.+ |-|+.-- -+++.-..+.+.+.--..+=|+|+.|-..++ .| +.--|.|
T Consensus 70 lp~~~s-~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~------~g~~~~~PcT 142 (288)
T 1b0a_A 70 LPETTS-EAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLC------QRAPRLRPCT 142 (288)
T ss_dssp ECTTCC-HHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHH------TTCCSSCCHH
T ss_pred CCCCCC-HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHh------CCCCCCCCCc
Confidence 444432 35777777777544 4566644 2566777888888755677799987644321 11 2233566
Q ss_pred HHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy17416 92 ITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK 171 (290)
Q Consensus 92 ~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~ 171 (290)
-..+.+++++.+. .+ ....-.++.| ....|+-+|+++...|..|++.+..
T Consensus 143 p~gi~~ll~~~~i---~l-~gk~vvVIG~-s~iVG~p~A~lL~~~gAtVtv~hs~------------------------- 192 (288)
T 1b0a_A 143 PRGIVTLLERYNI---DT-FGLNAVVIGA-SNIVGRPMSMELLLAGCTTTVTHRF------------------------- 192 (288)
T ss_dssp HHHHHHHHHHTTC---CC-TTCEEEEECC-CTTTHHHHHHHHHTTTCEEEEECSS-------------------------
T ss_pred HHHHHHHHHHcCC---CC-CCCEEEEECC-ChHHHHHHHHHHHHCCCeEEEEeCC-------------------------
Confidence 6677888887663 12 2223334443 2356999999999999999998621
Q ss_pred CCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 172 GSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 172 ~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+.++.+.+++||+||-|++..--++. +.++++++++
T Consensus 193 --------------t~~L~~~~~~ADIVI~Avg~p~lI~~-------~~vk~GavVI 228 (288)
T 1b0a_A 193 --------------TKNLRHHVENADLLIVAVGKPGFIPG-------DWIKEGAIVI 228 (288)
T ss_dssp --------------CSCHHHHHHHCSEEEECSCCTTCBCT-------TTSCTTCEEE
T ss_pred --------------chhHHHHhccCCEEEECCCCcCcCCH-------HHcCCCcEEE
Confidence 35677788999999999985532322 2357899887
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=81.61 E-value=2.2 Score=36.76 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
.|-+|+.++..++..|++|.+.+++++..++..+.+
T Consensus 128 aGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~ 163 (287)
T 1lu9_A 128 TGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 163 (287)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHH
Confidence 578899999999999999999999988766555443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=81.37 E-value=13 Score=31.93 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+-+|+++|..|++.|.+|.+.|++.+.++++.+
T Consensus 39 ~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~ 71 (273)
T 4fgs_A 39 SGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA 71 (273)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999998876655
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=81.22 E-value=17 Score=31.81 Aligned_cols=90 Identities=19% Similarity=0.102 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecC-----CHHHHHHHHHHHHHHHHHH
Q psy17416 90 RVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDV-----LSEQIENAKNTIQHTLQDY 164 (290)
Q Consensus 90 ~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~-----~~e~l~~a~~~i~~~~~~~ 164 (290)
+++..+.-+.+..|..- .+-.-+|++. ...+.++++..+...|.+|.+... +++.++.+.+..+.
T Consensus 128 QaLaDl~Ti~e~~g~l~---~gl~va~vGD--~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~----- 197 (307)
T 3tpf_A 128 QVLGDLFTIKEWNKMQN---GIAKVAFIGD--SNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALI----- 197 (307)
T ss_dssp HHHHHHHHHHHTTCCGG---GCCEEEEESC--SSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCCC---CCCEEEEEcC--CCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHH-----
Confidence 56666666666665311 0111223333 134567888888888999988654 33333333221111
Q ss_pred HHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcc
Q psy17416 165 HQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV 203 (290)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieav 203 (290)
. + ..++.++|++++++++|+|.--.
T Consensus 198 --~----g--------~~~~~~~d~~eav~~aDvvyt~~ 222 (307)
T 3tpf_A 198 --S----G--------AKISLGYDKFEALKDKDVVITDT 222 (307)
T ss_dssp --H----T--------CEEEEESCHHHHHTTCSEEEECC
T ss_pred --c----C--------CeEEEEcCHHHHhcCCCEEEecC
Confidence 0 1 24567899999999999997654
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=81.07 E-value=23 Score=31.09 Aligned_cols=148 Identities=9% Similarity=0.075 Sum_probs=79.4
Q ss_pred HHHHHhhcCCCcEEee-cCCCC----ChHHHhcccCCCCceeeeccCCCCC--------CCCeeeEeeCCCCC-HHHHHH
Q psy17416 29 YRAIDIFMSSNTILSS-STSSF----LPSVLSEHSTHRSQFIVAHPVNPPY--------FIPLVEIVPAAWTS-ERVITR 94 (290)
Q Consensus 29 ~~~~~~~~~~~~i~~s-nts~~----~~~~l~~~~~~~~r~~g~hf~~P~~--------~~~lvEiv~~~~t~-~~~~~~ 94 (290)
|..-....+.+++.-+ ++|++ ++.+-+..+.+=-.+|.++-+.... ..|++=-- +.... =+++..
T Consensus 64 Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVINa~-~~~~HPtQaLaD 142 (315)
T 1pvv_A 64 FEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVINGL-SDFSHPCQALAD 142 (315)
T ss_dssp HHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEEEE-CSSCCHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHHHHHHHHhCCCCEEcCC-CCCCCcHHHHHH
Confidence 5555556677776654 44555 4556665554334555554332111 12222211 12223 366777
Q ss_pred HHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCC-----HHHHHHHHHHHHHHHHHHHHcCC
Q psy17416 95 TREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVL-----SEQIENAKNTIQHTLQDYHQKGC 169 (290)
Q Consensus 95 ~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~-----~e~l~~a~~~i~~~~~~~~~~g~ 169 (290)
..-+.+..|. +++-.-++++. .+.+.++++..+...|.+|.+.... ++-++.+.+..++ .
T Consensus 143 l~Ti~e~~g~----l~gl~va~vGD--~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~-------~-- 207 (315)
T 1pvv_A 143 YMTIWEKKGT----IKGVKVVYVGD--GNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAE-------S-- 207 (315)
T ss_dssp HHHHHHHHSC----CTTCEEEEESC--CCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHH-------H--
T ss_pred HHHHHHHhCC----cCCcEEEEECC--CcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHH-------c--
Confidence 7777777664 11111223332 1345678888888889999886643 3333322221111 1
Q ss_pred CCCCCChhhhhcccccCCchHhhcccCcEEEEc
Q psy17416 170 LKGSLSPEEQFGLISGTPVLRECLEDAIFIQES 202 (290)
Q Consensus 170 ~~~~~~~~~~~~~i~~~~~l~~~l~~aDlViea 202 (290)
+ ..++.++|++++++++|+|.--
T Consensus 208 --g--------~~~~~~~d~~eav~~aDvvy~~ 230 (315)
T 1pvv_A 208 --G--------GSFELLHDPVKAVKDADVIYTD 230 (315)
T ss_dssp --T--------CEEEEESCHHHHTTTCSEEEEC
T ss_pred --C--------CeEEEEeCHHHHhCCCCEEEEc
Confidence 1 2456689999999999999863
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=80.99 E-value=1.5 Score=38.04 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=44.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|-+|+.++..++..| +|.+++++++..++..+.+.... + . .. .. .+.. .++.+.+.++|++|-
T Consensus 136 aGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~---~--~~-~~--~~d~-~~~~~~~~~~DilVn 199 (287)
T 1nvt_A 136 AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------N---K--KF-GE--EVKF-SGLDVDLDGVDIIIN 199 (287)
T ss_dssp CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------T---C--CH-HH--HEEE-ECTTCCCTTCCEEEE
T ss_pred chHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------c---c--cc-ce--eEEE-eeHHHhhCCCCEEEE
Confidence 5688999999999999 99999999987766555433210 0 0 00 00 0011 122345678999999
Q ss_pred ccccch
Q psy17416 202 SVPEIL 207 (290)
Q Consensus 202 avpe~~ 207 (290)
+++...
T Consensus 200 ~ag~~~ 205 (287)
T 1nvt_A 200 ATPIGM 205 (287)
T ss_dssp CSCTTC
T ss_pred CCCCCC
Confidence 988543
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=80.96 E-value=10 Score=33.55 Aligned_cols=95 Identities=8% Similarity=-0.033 Sum_probs=55.9
Q ss_pred eeEEecccchhHHHHHHHHHHc-Ccee-EEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~~V-~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ +|.||...+..+... ++++ .++|++++..++..+ +.|.. ......+++++.
T Consensus 10 giiG---~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~----------~~~~~----------~~~~~~~~~~~l 66 (362)
T 1ydw_A 10 GVMG---CADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNYP----------ESTKIHGSYESL 66 (362)
T ss_dssp EEES---CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTCC----------TTCEEESSHHHH
T ss_pred EEEC---chHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCCC----------CCCeeeCCHHHH
Confidence 4454 588888877777664 5665 579999987654332 11210 012335788887
Q ss_pred cc--cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC-CCCcCHH
Q psy17416 193 LE--DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS-TSSFLPS 237 (290)
Q Consensus 193 l~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~-ts~~~~~ 237 (290)
++ ++|+|+.|+|..... ++..+ .+..+.-+... ..+.+..
T Consensus 67 l~~~~~D~V~i~tp~~~h~--~~~~~---al~aGk~V~~EKP~a~~~~ 109 (362)
T 1ydw_A 67 LEDPEIDALYVPLPTSLHV--EWAIK---AAEKGKHILLEKPVAMNVT 109 (362)
T ss_dssp HHCTTCCEEEECCCGGGHH--HHHHH---HHTTTCEEEECSSCSSSHH
T ss_pred hcCCCCCEEEEcCChHHHH--HHHHH---HHHCCCeEEEecCCcCCHH
Confidence 75 599999999977643 44333 34455533332 2344443
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=4.2 Score=36.11 Aligned_cols=68 Identities=12% Similarity=-0.031 Sum_probs=46.1
Q ss_pred eeEEecccchhHH-HHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHh
Q psy17416 115 GFALNRIHGLIGQ-AWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 191 (290)
Q Consensus 115 gf~~nri~G~~g~-~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~ 191 (290)
|+++ .|.||. ..+..+... |+++. ++|++++..++..+. . ++...+++++
T Consensus 31 giIG---~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~--------------g~~~~~~~~~ 83 (350)
T 3rc1_A 31 GVIG---CADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----------F--------------GGEPVEGYPA 83 (350)
T ss_dssp EEES---CCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----------H--------------CSEEEESHHH
T ss_pred EEEc---CcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----------c--------------CCCCcCCHHH
Confidence 4555 688887 566666665 77765 789999876544331 0 1122477888
Q ss_pred hcc--cCcEEEEccccchHH
Q psy17416 192 CLE--DAIFIQESVPEILQI 209 (290)
Q Consensus 192 ~l~--~aDlVieavpe~~~~ 209 (290)
.++ +.|+|+.|+|.....
T Consensus 84 ll~~~~~D~V~i~tp~~~h~ 103 (350)
T 3rc1_A 84 LLERDDVDAVYVPLPAVLHA 103 (350)
T ss_dssp HHTCTTCSEEEECCCGGGHH
T ss_pred HhcCCCCCEEEECCCcHHHH
Confidence 775 589999999988754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.65 E-value=2.3 Score=36.39 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
+-+|+++|..|++.|.+|.+.|++++.+++..+.+++
T Consensus 19 ~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~ 55 (255)
T 4g81_D 19 RGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTR 55 (255)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 5689999999999999999999999988877765543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=80.17 E-value=1.3 Score=41.38 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=30.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|..|..+|..|...|++|+++|.+++.++++.+
T Consensus 11 ~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~ 44 (461)
T 4g65_A 11 AGQVGGTLAENLVGENNDITIVDKDGDRLRELQD 44 (461)
T ss_dssp CSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 6899999999999999999999999998876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 290 | ||||
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 2e-25 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 4e-16 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 3e-23 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 2e-15 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 6e-08 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 2e-07 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.002 |
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.1 bits (243), Expect = 2e-25
Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEE 178
GL+G A + A+ G+ V L D + + +K I+ +L+ +K + G E+
Sbjct: 13 GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 72
Query: 179 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 238
I+ + + + E++ E L++K+++++ +D F + +TI +S+TSS +
Sbjct: 73 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 132
Query: 239 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
++ +T + +F H NP + LVE++ TS++ + +G
Sbjct: 133 IANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKH 184
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 4e-16
Identities = 25/103 (24%), Positives = 55/103 (53%)
Query: 7 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIV 66
+ + E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +F
Sbjct: 86 VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAG 145
Query: 67 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109
H NP + LVE++ TS++ + +G PV+
Sbjct: 146 LHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC 188
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 91.9 bits (227), Expect = 3e-23
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 2/168 (1%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G++G A AS G + + D+ IE L KG E
Sbjct: 13 GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKG-RMTPAKMAEVLNG 71
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
I T + + + E+V E ++K V ++ + + IL+S+TS+ S+L++
Sbjct: 72 IRPTLSYGDFGNVDLVV-EAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKA 130
Query: 243 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 290
F+ H NP + +PLVE++ +S+ + T ++G
Sbjct: 131 LKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKN 178
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 70.7 bits (172), Expect = 2e-15
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 13 FIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNP 72
+ E+V E ++K V ++ + + IL+S+TS+ S+L++ F+ H NP
Sbjct: 86 LVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNP 145
Query: 73 PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 108
+ +PLVE++ +S+ + T ++G P+
Sbjct: 146 VHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 50.0 bits (119), Expect = 6e-08
Identities = 24/171 (14%), Positives = 51/171 (29%), Gaps = 17/171 (9%)
Query: 133 FASAGYKVSLYDV-LSEQIENAK----NTIQHTLQDYHQKGCLKGSLSPEEQFGLISG-- 185
FA V + + E +E +I +++ + + P+ L+
Sbjct: 67 FAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPED 126
Query: 186 -----TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--- 237
T RE +E A + +P + + + + I++ + +
Sbjct: 127 VGLKVTSDDREAVEGADIVITWLP-KGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAK 185
Query: 238 VLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 288
+ + HP P V I + SE + + EI
Sbjct: 186 IFKDLGREDLNITSYHPGCVPEMKGQVYIA-EGYASEEAVNKLYEIGKIAR 235
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 48.8 bits (116), Expect = 2e-07
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH 60
RE +E A + +P + + + + I++ + + + +
Sbjct: 135 DREAVEGADIVITWLP-KGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGRE 193
Query: 61 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107
HP P V I + SE + + EI K
Sbjct: 194 DLNITSYHPGCVPEMKGQVYIA-EGYASEEAVNKLYEIGKIARGKAF 239
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 36.0 bits (82), Expect = 0.002
Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 15/146 (10%)
Query: 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGL 182
G G A+A A G V +D+ +++I+ ++ + G
Sbjct: 10 GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGT----------AHP 59
Query: 183 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242
T + ++DA I VP + I ++S ++ + + ++
Sbjct: 60 DLLTSDIGLAVKDADVILIVVPA--IHHASIAANIASYISEGQLIILNPGATGGALEFRK 117
Query: 243 ---STHRSQFIVAHPVNPPYFIPLVE 265
+ + + +
Sbjct: 118 ILRENGAPEVTIGETSSMLFTCRSER 143
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 100.0 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 100.0 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 100.0 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 100.0 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.62 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.52 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.51 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.27 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.2 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.17 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.08 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.96 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.91 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.86 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.8 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.78 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.68 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.5 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.49 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.26 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.23 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.21 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.01 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.66 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.36 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 97.3 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.23 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.16 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.11 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.1 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.04 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.0 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.99 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 96.79 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.68 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.62 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.62 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.6 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.57 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 96.53 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.49 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.38 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 96.36 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.31 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.26 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.19 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 96.18 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.18 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.12 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.05 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.02 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.89 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.89 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 95.85 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.69 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.66 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 95.62 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.56 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.46 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.38 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 95.1 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.07 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.77 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.72 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.43 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.37 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.34 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.21 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 94.07 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.68 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 93.46 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.03 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.91 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 92.76 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.71 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 92.59 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 92.13 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 91.55 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 91.52 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 90.47 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 90.14 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 89.7 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.11 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 88.82 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 88.77 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.65 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 88.5 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 88.48 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.46 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 88.44 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 88.29 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 88.15 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.04 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.74 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 87.65 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.17 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 87.05 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 87.04 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 86.79 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 86.6 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 86.56 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 86.54 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.21 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.04 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 85.91 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 85.86 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 85.66 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 85.44 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 84.86 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.83 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 84.75 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 84.66 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 84.52 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 84.49 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 84.41 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 83.73 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 83.71 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 83.64 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 83.47 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 83.12 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 82.98 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 82.83 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 82.51 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 82.15 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.11 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 81.78 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 81.78 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 81.77 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 81.6 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 81.17 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.12 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 80.97 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 80.88 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 80.33 |
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-39 Score=273.86 Aligned_cols=169 Identities=22% Similarity=0.371 Sum_probs=158.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC----hhhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLS----PEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~----~~~~~~~i~~~~~l~~~l~~aD 197 (290)
+|.||++||..++..|++|.+||++++.++++.+++++.++.+++++....... ....+.++.+++|+.+++++||
T Consensus 12 aG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~~a~~~ad 91 (192)
T d1f0ya2 12 GGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTD 91 (192)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCS
T ss_pred cCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhHhhhcccc
Confidence 699999999999999999999999999999999999999999998887654211 2345688999999999999999
Q ss_pred EEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHH
Q psy17416 198 FIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVI 277 (290)
Q Consensus 198 lVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~ 277 (290)
+||||+||++++|+++|++|++.+++++||+||||++++++++..+.+|+||+|+||||||+.+|+|||++|++|+++++
T Consensus 92 ~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv~g~~T~~~~i 171 (192)
T d1f0ya2 92 LVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTF 171 (192)
T ss_dssp EEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEECCTTCCHHHH
T ss_pred eehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q psy17416 278 TRTREIMTEIGMK 290 (290)
Q Consensus 278 ~~~~~~~~~lgk~ 290 (290)
+++.+|++.+||+
T Consensus 172 ~~~~~~~~~lgk~ 184 (192)
T d1f0ya2 172 ESLVDFSKALGKH 184 (192)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCE
Confidence 9999999999984
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=1.2e-38 Score=266.58 Aligned_cols=167 Identities=23% Similarity=0.284 Sum_probs=157.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||++||..++..|++|++||++++.++++.+++.+.++++.+++.... ......++++..+++++ ++.+||+|||
T Consensus 12 aG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~adlViE 89 (186)
T d1wdka3 12 AGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTP-AKMAEVLNGIRPTLSYG-DFGNVDLVVE 89 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCH-HHHHHHHHHEEEESSST-TGGGCSEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccch-hhhhhhhceeecccccc-cccccceeee
Confidence 799999999999999999999999999999999999999999888776654 24556788899888887 5899999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTR 281 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~lvEvv~~~~t~~e~~~~~~ 281 (290)
|+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++|++|++++++++.
T Consensus 90 av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~~~~~~~~~ 169 (186)
T d1wdka3 90 AVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTV 169 (186)
T ss_dssp CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred eecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy17416 282 EIMTEIGMK 290 (290)
Q Consensus 282 ~~~~~lgk~ 290 (290)
+|++.+||+
T Consensus 170 ~~~~~lgk~ 178 (186)
T d1wdka3 170 AYAKKMGKN 178 (186)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHcCCE
Confidence 999999984
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-37 Score=260.92 Aligned_cols=113 Identities=22% Similarity=0.396 Sum_probs=110.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 80 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE 80 (290)
++|+++++++||+|||||+||+++|+++|++|++.++++|||+||||++++++|++.+.+|+||+|+||||||+.||+||
T Consensus 80 ~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVE 159 (192)
T d1f0ya2 80 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVE 159 (192)
T ss_dssp ESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEE
T ss_pred cchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHhCCccEEEeccce
Q psy17416 81 IVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 114 (290)
Q Consensus 81 iv~~~~t~~~~~~~~~~~~~~lgk~~v~v~~d~~ 114 (290)
|++|++|++++++.+.+|++++||+||.| +|+|
T Consensus 160 Iv~g~~T~~~~i~~~~~~~~~lgk~pV~v-~D~P 192 (192)
T d1f0ya2 160 VIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTP 192 (192)
T ss_dssp EECCTTCCHHHHHHHHHHHHHTTCEEEEE-CSCT
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCCEEEEe-eccC
Confidence 99999999999999999999999999999 7987
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=5.1e-36 Score=250.41 Aligned_cols=108 Identities=22% Similarity=0.362 Sum_probs=105.8
Q ss_pred hhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeeeEeeCC
Q psy17416 6 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAA 85 (290)
Q Consensus 6 ~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvEiv~~~ 85 (290)
+++++||+||||++|++++|+++|++|+++++++|||+||||++++++|++.+.+|+||+|+|||||++.||+|||++|+
T Consensus 79 ~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~ 158 (186)
T d1wdka3 79 GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGE 158 (186)
T ss_dssp TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECS
T ss_pred ccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCccEEEeccce
Q psy17416 86 WTSERVITRTREIMTEIGMKPVTLTTEIR 114 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk~~v~v~~d~~ 114 (290)
+|++++++.+.+|++++||.||.| +|+|
T Consensus 159 ~T~~~~~~~~~~~~~~lgk~pv~v-~d~P 186 (186)
T d1wdka3 159 KSSDLAVATTVAYAKKMGKNPIVV-NDCP 186 (186)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEE-ESCT
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEE-eccC
Confidence 999999999999999999999999 6987
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.62 E-value=3.6e-15 Score=120.23 Aligned_cols=146 Identities=20% Similarity=0.216 Sum_probs=111.0
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|+++ +|.||.++|..+.+.|++|.+||++++.++++.+ .|..+. ..+++ ++++
T Consensus 4 ~iIG---~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-----------~~~~~~------------~~~~~-~~~~ 56 (165)
T d2f1ka2 4 GVVG---LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLVDE------------AGQDL-SLLQ 56 (165)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSCSE------------EESCG-GGGT
T ss_pred EEEe---ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-----------hhccce------------eeeec-cccc
Confidence 5665 7999999999999999999999999998887765 333221 12344 4689
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCC------------CCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY------------FIP 262 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~------------~~~ 262 (290)
+||+||.|+|. ....++++++.+.+++++++++.+| ..............++++.|++..+. ..+
T Consensus 57 ~~DiIilavp~--~~~~~vl~~l~~~l~~~~iv~~~~s-~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~ 133 (165)
T d2f1ka2 57 TAKIIFLCTPI--QLILPTLEKLIPHLSPTAIVTDVAS-VKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNA 133 (165)
T ss_dssp TCSEEEECSCH--HHHHHHHHHHGGGSCTTCEEEECCS-CCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTC
T ss_pred ccccccccCcH--hhhhhhhhhhhhhcccccceeeccc-cchHHHHHHHHhhcccccceeeecccccchhhhcccccCCC
Confidence 99999999994 4578999999999999999864433 33333322222235789999876542 234
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
.+-++++..++++.++.+.+||+.+|.+
T Consensus 134 ~~il~~~~~~~~~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 134 PYVLTPTEYTDPEQLACLRSVLEPLGVK 161 (165)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHGGGTCE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence 5668999999999999999999999964
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.52 E-value=6.9e-15 Score=125.27 Aligned_cols=163 Identities=14% Similarity=0.089 Sum_probs=114.9
Q ss_pred hHHHHHH------HHHHcCceeEEecCCHHHHHHHHHH-----HHHHHHHHHHcCCCCCCCChhhh-------hcccccC
Q psy17416 125 IGQAWAM------IFASAGYKVSLYDVLSEQIENAKNT-----IQHTLQDYHQKGCLKGSLSPEEQ-------FGLISGT 186 (290)
Q Consensus 125 ~g~~ia~------~~~~~G~~V~l~d~~~e~l~~a~~~-----i~~~~~~~~~~g~~~~~~~~~~~-------~~~i~~~ 186 (290)
||..+++ .|++.|+.|++.|.++++..++..+ ++..++..+++.....+.++... -.+++++
T Consensus 53 ~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~ 132 (242)
T d2b0ja2 53 LVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVT 132 (242)
T ss_dssp HCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEE
T ss_pred hhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEE
Confidence 5555555 4788999999999998775333321 23333322222111111111111 1346778
Q ss_pred CchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCC-CCcEEEeccCCCCCCCC
Q psy17416 187 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVNPPYFIP 262 (290)
Q Consensus 187 ~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~-~~r~ig~Hf~~p~~~~~ 262 (290)
+|..+++++||+||+|+|.. +.+++++++|.+.+++++|++ ++|+.+.. ++++.+.. ..+|+++||+++|....
T Consensus 133 ~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~~g~Iii-d~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g 210 (242)
T d2b0ja2 133 SDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKG 210 (242)
T ss_dssp SCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCC
T ss_pred CCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCCCCcEEE-ecCCCcHHHHHHHHHhcccCCCEEECCCccCcCcccc
Confidence 99999999999999999965 568899999999999999985 44444443 56566654 56899999999998777
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
...++.+ .++++.++++.++++.+||+
T Consensus 211 ~~li~~~-~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 211 QVYIAEG-YASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp CEEEEES-SSCHHHHHHHHHHHHHHHSC
T ss_pred ceEEecC-CCCHHHHHHHHHHHHHHCCC
Confidence 7776655 68999999999999999985
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.51 E-value=1.5e-13 Score=111.00 Aligned_cols=141 Identities=18% Similarity=0.285 Sum_probs=107.1
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchH-hhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR-ECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~-~~l~~aDl 198 (290)
+|.||.++|..+.+.|+ +|..||++++.++.+.+ .|..+.. .++.. ....++|+
T Consensus 9 ~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~~~------------~~~~~~~~~~~~dl 65 (171)
T d2g5ca2 9 VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIIDEG------------TTSIAKVEDFSPDF 65 (171)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCSEE------------ESCGGGGGGTCCSE
T ss_pred cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcchhh------------hhhhhhhhcccccc
Confidence 79999999999999986 68889999999988877 3333221 22222 23458999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcC--HHHHhccCCCCCcEEEeccCCCC------------CCCCeE
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPP------------YFIPLV 264 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~la~~~~~~~r~ig~Hf~~p~------------~~~~lv 264 (290)
||.|+| ...-.+++.++.+.++++++++..+|... ...+...+ +.+|+|.||+... +..+.+
T Consensus 66 Iila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~ 141 (171)
T d2g5ca2 66 VMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDNLYEGKKV 141 (171)
T ss_dssp EEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSSTTTTCEE
T ss_pred ccccCC--chhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHHhhCCCeE
Confidence 999999 44467889999999999999986555433 33443333 5689999996433 234567
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 265 EIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 265 Evv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-|+|+..++++.++.+.+||+.+|.
T Consensus 142 il~p~~~~~~~~~~~v~~~~~~lG~ 166 (171)
T d2g5ca2 142 ILTPTKKTDKKRLKLVKRVWEDVGG 166 (171)
T ss_dssp EECCCSSSCHHHHHHHHHHHHHTTC
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999999999996
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.27 E-value=1.3e-11 Score=104.81 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=89.9
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH---HHhcccC-CCCceeeeccCCCCCCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPYFI 76 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~---~l~~~~~-~~~r~~g~hf~~P~~~~ 76 (290)
++|+.|++++||+||.|+|+. +.+.+++++|...+++++|+. ++||.+.. ++++.+. ++-+++++|+++++..+
T Consensus 132 ~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~~g~Iii-d~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~ 209 (242)
T d2b0ja2 132 TSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMK 209 (242)
T ss_dssp ESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTC
T ss_pred ECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCCCCcEEE-ecCCCcHHHHHHHHHhcccCCCEEECCCccCcCccc
Confidence 478999999999999999966 889999999999999999995 44444554 5666665 46789999999999877
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
..+.++.+ .++++.++.+.++++.+||.++++
T Consensus 210 g~~li~~~-~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 210 GQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp CCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred cceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence 77777655 689999999999999999998876
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.20 E-value=1.7e-11 Score=97.97 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=103.3
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
||++ +|.||..+|..+++.|++|.+||++++..++..+ . ......++.++++
T Consensus 4 giIG---lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~--------------~~~~~~~~~e~~~ 55 (161)
T d1vpda2 4 GFIG---LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------A--------------GAETASTAKAIAE 55 (161)
T ss_dssp EEEC---CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------T--------------TCEECSSHHHHHH
T ss_pred EEEe---hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------h--------------hhhhcccHHHHHh
Confidence 6776 8999999999999999999999999998776655 1 1223577888899
Q ss_pred cCcEEEEccccchHHHHHHH--HHHhhhCCCCcEEEeCCCCcCHH---HHhccCCC-CCcEEEeccCCCC---CCCCeEE
Q psy17416 195 DAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVNPP---YFIPLVE 265 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~-~~r~ig~Hf~~p~---~~~~lvE 265 (290)
+||+||.|+|....++.-++ ..+.+.++++++++..+ +..++ +++..+.. ..+|+.......+ ...++.-
T Consensus 56 ~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~ 134 (161)
T d1vpda2 56 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMS-SIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSV 134 (161)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEE
Confidence 99999999998887766665 34788889999887333 33333 44444432 3455555443211 1234566
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
++.| +++.++++..+++.+|+
T Consensus 135 ~~gG---~~~~~~~~~~il~~~~~ 155 (161)
T d1vpda2 135 MVGG---DKAIFDKYYDLMKAMAG 155 (161)
T ss_dssp EEES---CHHHHHHHHHHHHTTEE
T ss_pred EEcC---CHHHHHHHHHHHHHhcC
Confidence 6766 78999999999999876
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.17 E-value=2.3e-10 Score=90.44 Aligned_cols=142 Identities=9% Similarity=0.045 Sum_probs=110.2
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
||++ .|.||.+++..+.+.|+++.+++++++..++..+. .++..+.+.+++++
T Consensus 4 g~IG---~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~------------------------~g~~~~~~~~~~~~ 56 (152)
T d2ahra2 4 GIIG---VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ------------------------LALPYAMSHQDLID 56 (152)
T ss_dssp EEEC---CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH------------------------HTCCBCSSHHHHHH
T ss_pred EEEe---ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccc------------------------cceeeechhhhhhh
Confidence 6776 89999999999999999999999999876544331 12334678888899
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCC-CCeEEEecCCCCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPAAWTS 273 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~-~~lvEvv~~~~t~ 273 (290)
+||+||.|++.+. . .++.+.+.++.++.|-.++++++.+.+.+....+++-.+|--|... ....-++.+..++
T Consensus 57 ~~dvIilavkp~~--~----~~vl~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~ 130 (152)
T d2ahra2 57 QVDLVILGIKPQL--F----ETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS 130 (152)
T ss_dssp TCSEEEECSCGGG--H----HHHHTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred ccceeeeecchHh--H----HHHhhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCC
Confidence 9999999997432 3 3444456778888899999999999988776667777666333322 3456678888999
Q ss_pred HHHHHHHHHHHHHcCC
Q psy17416 274 ERVITRTREIMTEIGM 289 (290)
Q Consensus 274 ~e~~~~~~~~~~~lgk 289 (290)
++..+.+.++++.+|+
T Consensus 131 ~~~~~~v~~l~~~~G~ 146 (152)
T d2ahra2 131 QELQARVRDLTDSFGS 146 (152)
T ss_dssp HHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999996
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.08 E-value=1.2e-09 Score=86.06 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=109.0
Q ss_pred eeEEecccchhHHHHHHHHHHcC-ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G-~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
||++ .|.||.+++..+.+.| ++|.++|++++.+++..+. . .+...++.+ ++
T Consensus 4 ~fIG---~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~----------~--------------~~~~~~~~~-~v 55 (152)
T d1yqga2 4 YFLG---GGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------L--------------GVETSATLP-EL 55 (152)
T ss_dssp EEEC---CSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------T--------------CCEEESSCC-CC
T ss_pred EEEc---CcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh----------c--------------ccccccccc-cc
Confidence 6776 7999999999877666 8999999999887665441 1 123345555 47
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC-eEEEecCCCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWT 272 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~-lvEvv~~~~t 272 (290)
+++|+||.|++. ..-.+++++ ..+.+.++.|...+.+++.+.+.+....+++...|..|..... ..-++.+...
T Consensus 56 ~~~Div~lavkP--~~~~~v~~~---l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~ 130 (152)
T d1yqga2 56 HSDDVLILAVKP--QDMEAACKN---IRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEV 130 (152)
T ss_dssp CTTSEEEECSCH--HHHHHHHTT---CCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTS
T ss_pred cccceEEEecCH--HHHHHhHHH---HhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCC
Confidence 899999999972 223344443 3456788889999999999999988777889898887776665 3446778888
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy17416 273 SERVITRTREIMTEIGM 289 (290)
Q Consensus 273 ~~e~~~~~~~~~~~lgk 289 (290)
+++..+.+..+|..+|+
T Consensus 131 ~~~~~~~v~~l~~~~G~ 147 (152)
T d1yqga2 131 SETDRRIADRIMKSVGL 147 (152)
T ss_dssp CHHHHHHHHHHHHTTEE
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 99999999999999996
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.96 E-value=1.3e-09 Score=86.77 Aligned_cols=143 Identities=15% Similarity=0.248 Sum_probs=101.2
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+.+.||+|.+||++++..+.+.+ . ......++.+.+
T Consensus 4 Ig~IG---lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-----------~--------------~~~~~~~~~e~~ 55 (162)
T d3cuma2 4 IAFIG---LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------A--------------GASAARSARDAV 55 (162)
T ss_dssp EEEEC---CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------T--------------TCEECSSHHHHH
T ss_pred EEEEE---EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh-----------h--------------hccccchhhhhc
Confidence 46776 8999999999999999999999999988766554 1 112346777889
Q ss_pred ccCcEEEEccccchHHHHHHHH---HHhhhCCCCcEEEeCCCCcCHH---HHhccCC-CCCcEEEeccCCCCC---CCCe
Q psy17416 194 EDAIFIQESVPEILQIKHQVYR---AIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPY---FIPL 263 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~---~l~~~~~~~~ii~s~ts~~~~~---~la~~~~-~~~r~ig~Hf~~p~~---~~~l 263 (290)
..+|+|+.|+|.....+ +++. .+...+.++.+++ +.|+..++ +++..+. .--+|+..+....|. ...+
T Consensus 56 ~~~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iii-d~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l 133 (162)
T d3cuma2 56 QGADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVL-ECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTL 133 (162)
T ss_dssp TSCSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEE-ECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCE
T ss_pred cccCeeeecccchhhHH-HHHhccccccccCCCCCEEE-ECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCe
Confidence 99999999999887654 4443 3666788888886 33333333 4444443 234566554433222 2346
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 264 VEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 264 vEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
.-++.| ++++++++..+++.+|+
T Consensus 134 ~~~~gG---~~~~~~~~~~il~~~~~ 156 (162)
T d3cuma2 134 TFMVGG---DAEALEKARPLFEAMGR 156 (162)
T ss_dssp EEEEES---CHHHHHHHHHHHHHHEE
T ss_pred EEEecC---CHHHHHHHHHHHHHHcC
Confidence 666766 88999999999999986
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.91 E-value=1.2e-09 Score=85.94 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=92.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||+.+|..+.+.||+|.+||+++... .++.+.++|+++.
T Consensus 18 ~G~mG~~la~~L~~~G~~V~~~d~~~~~~--------------------------------------~~~~~~~~~~v~~ 59 (152)
T d2pv7a2 18 YGKLGGLFARYLRASGYPISILDREDWAV--------------------------------------AESILANADVVIV 59 (152)
T ss_dssp TSHHHHHHHHHHHTTTCCEEEECTTCGGG--------------------------------------HHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCcEecccccccc--------------------------------------cchhhhhcccccc
Confidence 59999999999999999999999865321 1234678999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCCC----CCeEEEecCCCCCH
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF----IPLVEIVPAAWTSE 274 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~~----~~lvEvv~~~~t~~ 274 (290)
++|... -..++.++.+.++++++++ +++|.... .+.+. .+.+|++.||...+.. .+.+-++++ .++
T Consensus 60 ~~~~~~--~~~v~~~~~~~~~~~~iii-D~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~~~v~~~g--~~~ 132 (152)
T d2pv7a2 60 SVPINL--TLETIERLKPYLTENMLLA-DLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQVVVRCDG--RFP 132 (152)
T ss_dssp CSCGGG--HHHHHHHHGGGCCTTSEEE-ECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTCEEEEEEE--ECG
T ss_pred ccchhh--heeeeecccccccCCceEE-EecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCcEEEEecC--CCH
Confidence 999554 6689999999999999887 33333333 33333 3568999999766543 235555554 456
Q ss_pred HHHHHHHHHHHHcCCC
Q psy17416 275 RVITRTREIMTEIGMK 290 (290)
Q Consensus 275 e~~~~~~~~~~~lgk~ 290 (290)
+.++++.++|+.+|.+
T Consensus 133 ~~~~~~~~ll~~~Ga~ 148 (152)
T d2pv7a2 133 ERYEWLLEQIQIWGAK 148 (152)
T ss_dssp GGTHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCCE
Confidence 7899999999999963
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=98.86 E-value=1.6e-09 Score=87.39 Aligned_cols=152 Identities=9% Similarity=0.029 Sum_probs=99.0
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
.-|||+ +|.||..+|..|.+.||+|.+||++++..+...+ .+...... .......++.++
T Consensus 4 nIg~IG---lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~~~~------~~a~~~~~~~~~ 63 (176)
T d2pgda2 4 DIALIG---LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKGTKV------LGAHSLEEMVSK 63 (176)
T ss_dssp SEEEEC---CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTTSSC------EECSSHHHHHHH
T ss_pred cEEEEe---EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------hccccccc------cchhhhhhhhhh
Confidence 457887 8999999999999999999999999998876655 22111100 111223456667
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCC-CCcEEEeccCCCC---CCCCeEE
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH-RSQFIVAHPVNPP---YFIPLVE 265 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~-~~r~ig~Hf~~p~---~~~~lvE 265 (290)
+.++|.+|.++|....+ .+++..+.+.++++.+++. +|+..+. +++..+.. -.+|+.......+ .... .-
T Consensus 64 ~~~~~~ii~~~~~~~~v-~~v~~~l~~~~~~g~iiid-~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~ 140 (176)
T d2pgda2 64 LKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIID-GGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SL 140 (176)
T ss_dssp BCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EE
T ss_pred hcccceEEEecCchHHH-HHHHHHHHhccccCcEEEe-cCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EE
Confidence 88999999999988765 4467888999999998873 3333333 44443322 2334433221111 0011 22
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 266 IVPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 266 vv~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
++.| ++++++++..+++.++++
T Consensus 141 ~~gG---~~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 141 MPGG---NKEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp EEEE---CTTTHHHHHHHHHHHSCB
T ss_pred EcCC---CHHHHHHHHHHHHHHhcc
Confidence 4555 778899999999999863
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.80 E-value=2.4e-09 Score=87.55 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=78.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||.++|..++..|++|.+|+++++.++...+. +.....++...+..+|..+++++++++++|+||.
T Consensus 15 aG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~-----------~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iii 83 (189)
T d1n1ea2 15 SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK-----------RENVLFLKGVQLASNITFTSDVEKAYNGAEIILF 83 (189)
T ss_dssp CSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH-----------TBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEE
T ss_pred CCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc-----------ccccccccccccccccccchhhhhccCCCCEEEE
Confidence 69999999999999999999999999887765542 2222223334456789999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhh-----CCCCcEEEeCCCCcC
Q psy17416 202 SVPEILQIKHQVYRAIDIF-----MSSNTILSSSTSSFL 235 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~-----~~~~~ii~s~ts~~~ 235 (290)
|+|.+. .+.+++++.+. .+++.++++.++|+.
T Consensus 84 avPs~~--~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie 120 (189)
T d1n1ea2 84 VIPTQF--LRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 120 (189)
T ss_dssp CSCHHH--HHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred cCcHHH--HHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence 999554 77888887653 356666777777664
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.78 E-value=7.7e-09 Score=81.13 Aligned_cols=135 Identities=14% Similarity=0.072 Sum_probs=85.2
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|||+ .|.||+.++..+.+.++.+.+|+|+++..++..+ .+.. ...++.++++
T Consensus 3 gfIG---~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~-----------~~~~--------------~~~~~~~~~~ 54 (153)
T d2i76a2 3 NFVG---TGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE-----------VYGG--------------KAATLEKHPE 54 (153)
T ss_dssp EEES---CCHHHHHHHHTTC----CCCEECSSHHHHHHHHH-----------HTCC--------------CCCSSCCCCC
T ss_pred EEEe---CcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhh-----------cccc--------------cccchhhhhc
Confidence 7887 8999999998886654445799999998877655 1110 1234556789
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCCCCCC--------eEEE
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP--------LVEI 266 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~~~~~--------lvEv 266 (290)
.+|+||.|+|.+. -.+++.+|. .++.++++.+++.+.+.+.. .+..+.||..++.... ++-.
T Consensus 55 ~~DiVil~v~d~~--i~~v~~~l~---~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (153)
T d2i76a2 55 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFG 124 (153)
T ss_dssp ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred cCcEEEEeccchh--hhHHHhhhc---ccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEE
Confidence 9999999999765 445655442 46788887777777655532 2345677654432111 2223
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCC
Q psy17416 267 VPAAWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 267 v~~~~t~~e~~~~~~~~~~~lgk~ 290 (290)
+.+ +++.++.+.++++.+|.+
T Consensus 125 ~~g---d~~~~~~~~~l~~~lG~~ 145 (153)
T d2i76a2 125 LEG---DERGLPIVKKIAEEISGK 145 (153)
T ss_dssp ECC---CTTTHHHHHHHHHHHCSC
T ss_pred EeC---CHHHHHHHHHHHHHHCCc
Confidence 333 778899999999999953
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.68 E-value=4.6e-08 Score=78.44 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=72.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-hhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLS-PEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~-~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..+|..|++.|++|.+||++++.+++..+ .|....... ..........++++.++++++|+||
T Consensus 9 aG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii 77 (184)
T d1bg6a2 9 LGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD-----------RGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL 77 (184)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence 6999999999999999999999999988776554 121110000 0111123334678889999999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
.|+|.+. ...+++++.+++.++++|..
T Consensus 78 i~v~~~~--~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 78 IVVPAIH--HASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ECSCGGG--HHHHHHHHGGGCCTTCEEEE
T ss_pred EEEchhH--HHHHHHHhhhccCCCCEEEE
Confidence 9999877 67999999999999998764
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.50 E-value=1.8e-07 Score=75.03 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=97.9
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
|||+ +|.||..+|..+.+.|++|.+||++++..++..+ .+...... .......-..++-..+.
T Consensus 5 GvIG---lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~ 67 (178)
T d1pgja2 5 GVVG---LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK-----------ANASAPFA---GNLKAFETMEAFAASLK 67 (178)
T ss_dssp EEEC---CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HTTTSTTG---GGEEECSCHHHHHHHBC
T ss_pred EEEe---ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cCCccccc---cchhhhhhhhHHHHhcc
Confidence 6776 8999999999999999999999999998877665 22221110 00011111123334567
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe-CCCCcCHH-HHhccCC-CCCcEEEeccCCCCCC--CCeEEEecC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS-STSSFLPS-VLSEHST-HRSQFIVAHPVNPPYF--IPLVEIVPA 269 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s-~ts~~~~~-~la~~~~-~~~r~ig~Hf~~p~~~--~~lvEvv~~ 269 (290)
.++.++.+++....+. .++..+...+.++.+++. +|+....+ ++++.+. ...+|+....+..+.. ....-++.|
T Consensus 68 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG 146 (178)
T d1pgja2 68 KPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGG 146 (178)
T ss_dssp SSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEE
T ss_pred cceEEEEeecCcchhh-hhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeC
Confidence 8899999998777654 455677778888887763 22222222 4444443 3346665544432210 001225655
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q psy17416 270 AWTSERVITRTREIMTEIGMK 290 (290)
Q Consensus 270 ~~t~~e~~~~~~~~~~~lgk~ 290 (290)
++++++++..+++.++++
T Consensus 147 ---~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 147 ---TLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp ---CHHHHHHHHHHHHHHSCB
T ss_pred ---CHHHHHHHHHHHHHHhcc
Confidence 789999999999999863
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.49 E-value=2.8e-07 Score=74.16 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=70.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCC--HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVL--SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~--~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.||.++|..++..|++|.+|.++ ++.++...+ .+.. ..........++..++|++++++++|+|
T Consensus 8 aG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~-----------~~~~-~~~~~~~~~~~i~~~~~~~~~~~~ad~I 75 (180)
T d1txga2 8 AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA-----------GREH-PRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (180)
T ss_dssp CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT-----------TCCB-TTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhh-----------hhhh-hhhcchhccccccccccHHHHHhccchh
Confidence 7999999999999999999999874 433333222 1111 1111111224567789999999999999
Q ss_pred EEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC
Q psy17416 200 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 233 (290)
Q Consensus 200 ieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 233 (290)
|.|+|... .+.+++++.++++++.++. .+++
T Consensus 76 i~avps~~--~~~~~~~l~~~l~~~~ii~-~tkg 106 (180)
T d1txga2 76 LLGVSTDG--VLPVMSRILPYLKDQYIVL-ISKG 106 (180)
T ss_dssp EECSCGGG--HHHHHHHHTTTCCSCEEEE-CCCS
T ss_pred hcccchhh--hHHHHHhhccccccceecc-cccC
Confidence 99999665 8899999999998887665 3443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.26 E-value=1.5e-06 Score=68.42 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=76.5
Q ss_pred HHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCC-------
Q psy17416 4 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI------- 76 (290)
Q Consensus 4 l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~------- 76 (290)
..+++++||+||-|+| ...-.++++++....++++++.+.+|. .............++++.|++..+...
T Consensus 51 ~~~~~~~~DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~ 127 (165)
T d2f1ka2 51 DLSLLQTAKIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEE 127 (165)
T ss_dssp CGGGGTTCSEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCT
T ss_pred ecccccccccccccCc--Hhhhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhhcccccceeeecccccchhhhcc
Confidence 3468999999999998 456788999999999999999665443 443333333334579999998765322
Q ss_pred -----CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEE
Q psy17416 77 -----PLVEIVPAAWTSERVITRTREIMTEIGMKPVT 108 (290)
Q Consensus 77 -----~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~ 108 (290)
..+=++++..++++.++.+.++++.+|.+.+.
T Consensus 128 ~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~ 164 (165)
T d2f1ka2 128 NLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYL 164 (165)
T ss_dssp TTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred cccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEe
Confidence 22336778899999999999999999987543
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.23 E-value=8.1e-07 Score=69.27 Aligned_cols=113 Identities=14% Similarity=0.032 Sum_probs=74.1
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
||++ +|.||..+|..+.+.|++|.++++++....+.... .+....+++++++
T Consensus 4 giIG---~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~e~~~ 55 (152)
T d1i36a2 4 GFIG---FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR-------------------------TVGVTETSEEDVY 55 (152)
T ss_dssp EEES---CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-------------------------HHTCEECCHHHHH
T ss_pred EEEc---HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh-------------------------cccccccHHHHHh
Confidence 6665 79999999999999999999999877654433220 1122456677899
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhccCCCCCcEEEeccCCCC
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPP 258 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~~~~~~r~ig~Hf~~p~ 258 (290)
+||+||.|+|.+... ++..++....+...+..|+.+.-...++++.+.. .+|+....+.++
T Consensus 56 ~~diIi~~v~~~~~~--~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~ 116 (152)
T d1i36a2 56 SCPVVISAVTPGVAL--GAARRAGRHVRGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSV 116 (152)
T ss_dssp TSSEEEECSCGGGHH--HHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCH
T ss_pred hcCeEEEEecCchHH--HHHHhhcccCCceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCc
Confidence 999999999977543 5566666665432222233343345577666643 356666655443
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.21 E-value=3.3e-05 Score=62.73 Aligned_cols=73 Identities=25% Similarity=0.190 Sum_probs=54.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-hh------hhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLS-PE------EQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~-~~------~~~~~i~~~~~l~~~l~ 194 (290)
+|.+|..+|..++..|++|..||.+++.++...+ |...-..+ .. ....++..++++.+++.
T Consensus 8 lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~------------g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~ 75 (202)
T d1mv8a2 8 LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ------------GKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL 75 (202)
T ss_dssp CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT------------TCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcc------------cCCcccchhhhhhhhhhhcccccccCCCHHHHHh
Confidence 7999999999999999999999999988766543 11110000 00 12245677899999999
Q ss_pred cCcEEEEccccc
Q psy17416 195 DAIFIQESVPEI 206 (290)
Q Consensus 195 ~aDlVieavpe~ 206 (290)
+||+++.|+|-+
T Consensus 76 ~~d~i~i~VpTP 87 (202)
T d1mv8a2 76 DSDVSFICVGTP 87 (202)
T ss_dssp TCSEEEECCCCC
T ss_pred hCCEEEEecCcc
Confidence 999999999964
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.01 E-value=3.4e-06 Score=65.88 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=88.9
Q ss_pred eeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 114 RGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 114 ~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
-||++ +|.||..+|..+.+.|+.+. |+++++...+..+. .+. .... .+.+
T Consensus 3 Ig~IG---lG~MG~~ma~~L~~~g~~~~-~~~~~~~~~~~~~~----------~~~---------------~~~~-~~~~ 52 (156)
T d2cvza2 3 VAFIG---LGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEE----------FGS---------------EAVP-LERV 52 (156)
T ss_dssp EEEEC---CSTTHHHHHHHHHTTSCEEE-ECSSTHHHHHHHHH----------HCC---------------EECC-GGGG
T ss_pred EEEEe---HHHHHHHHHHHHHhCCCEEE-EeCCHHHHHHHHHH----------cCC---------------cccc-cccc
Confidence 47887 89999999999999888764 66666554433331 110 1122 2356
Q ss_pred ccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHH---HHhccCCCCCcEEEeccCCCCC--------CCC
Q psy17416 194 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPY--------FIP 262 (290)
Q Consensus 194 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~la~~~~~~~r~ig~Hf~~p~~--------~~~ 262 (290)
.++|++|.++|....+. .....+.+.+.++.+++ ++|+..++ ++++.+... |.+|...|. ...
T Consensus 53 ~~~~~~i~~~~~~~~v~-~~~~~l~~~~~~~~~ii-d~sT~~p~~~~~~~~~~~~~----gi~~ldapVsGg~~~A~~G~ 126 (156)
T d2cvza2 53 AEARVIFTCLPTTREVY-EVAEALYPYLREGTYWV-DATSGEPEASRRLAERLREK----GVTYLDAPVSGGTSGAEAGT 126 (156)
T ss_dssp GGCSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEE-ECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTC
T ss_pred cceeEEEecccchhhhh-hhhcccccccccccccc-ccccCCHHHHHHHHHHHHHc----CCeEEeccccCchhhhccCC
Confidence 78999999999887765 45577888888998876 33333333 555555432 556655442 234
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 263 LVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 263 lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
|.-++.| ++++++++..++. +++
T Consensus 127 L~~~vgG---~~~~~~~~~p~L~-~~~ 149 (156)
T d2cvza2 127 LTVMLGG---PEEAVERVRPFLA-YAK 149 (156)
T ss_dssp EEEEEES---CHHHHHHHGGGCT-TEE
T ss_pred EEEEEeC---CHHHHHHHHHHHH-hcC
Confidence 6667777 8999999988873 543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.66 E-value=0.00017 Score=56.41 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=72.5
Q ss_pred hcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChH--HHhcccCCCCceeeeccCCCCCC---------
Q psy17416 7 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS--VLSEHSTHRSQFIVAHPVNPPYF--------- 75 (290)
Q Consensus 7 ~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~--~l~~~~~~~~r~~g~hf~~P~~~--------- 75 (290)
...++|+|+-|+|- +.-.+++.++....++++++...+|.-... .+.... +.||+|.|+..-...
T Consensus 59 ~~~~~dlIila~p~--~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~ 134 (171)
T d2g5ca2 59 EDFSPDFVMLSSPV--RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN 134 (171)
T ss_dssp GGTCCSEEEECSCH--HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred hccccccccccCCc--hhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence 44689999999994 455678899999999999999888754432 444433 678999998643211
Q ss_pred ---CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccE
Q psy17416 76 ---IPLVEIVPAAWTSERVITRTREIMTEIGMKPV 107 (290)
Q Consensus 76 ---~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v 107 (290)
-..+=++++..++++.++.+.+|++.+|...+
T Consensus 135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~ 169 (171)
T d2g5ca2 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVE 169 (171)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 12233678888999999999999999997543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=1.9e-05 Score=61.44 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=67.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.||..+|..|++.|++|.+++++++..+.... . .. .. ...... ...+..+.+.++|+||.
T Consensus 8 aG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~-----------~---~~--~~-~~~~~~-~~~~~~~~~~~~D~iii 69 (167)
T d1ks9a2 8 CGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNL-----------V---ET--DG-SIFNES-LTANDPDFLATSDLLLV 69 (167)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEE-----------E---CT--TS-CEEEEE-EEESCHHHHHTCSEEEE
T ss_pred cCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhcc-----------c---cC--Cc-cccccc-cccchhhhhcccceEEE
Confidence 6999999999999999999999998764321100 0 00 00 001111 12333446789999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhcc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 242 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~ 242 (290)
+++..- -.+.++.+.+.++++++|.+..-++...+..+.
T Consensus 70 ~vka~~--~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~~l~~ 108 (167)
T d1ks9a2 70 TLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQN 108 (167)
T ss_dssp CSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT
T ss_pred eecccc--hHHHHHhhccccCcccEEeeccCcccHHHHHhh
Confidence 999755 568889999999999888776556654444333
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.23 E-value=0.00032 Score=54.26 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=69.8
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|..|..+|..+...|+ ++.++|.+++.++.-...+...... .+ ....+..+++.++++++||+|+
T Consensus 15 aG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~---~~----------~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 15 SGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV---VD----------TNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH---TT----------CCCCEEEECSHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccc---cC----------CeeEEeccCchhhhhcCCCeEE
Confidence 58889999988888775 8999999986554332222221110 00 1123344677777899999999
Q ss_pred Eccc------------c-------chHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh-ccCCC-CCcEEEe
Q psy17416 201 ESVP------------E-------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS-EHSTH-RSQFIVA 252 (290)
Q Consensus 201 eavp------------e-------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la-~~~~~-~~r~ig~ 252 (290)
.+.. . |..+-+++..++.+++++..++..+.---.++.++ +.... +.|++|+
T Consensus 82 itag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~~~~sg~p~~rViG~ 154 (154)
T d1pzga1 82 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGM 154 (154)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred EecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHHHhCcChhcEecC
Confidence 8762 1 23356677778888776655443221111233333 23343 5688885
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.16 E-value=0.00052 Score=52.68 Aligned_cols=115 Identities=11% Similarity=0.079 Sum_probs=69.2
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|+.++..|+ ++.++|++++....-...+.+. ...... .....+.+++ ++++||+|
T Consensus 14 aG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~------~~~~~~--------~~~~~~~d~~-~l~daDvv 78 (148)
T d1ldna1 14 AGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG------KVFAPK--------PVDIWHGDYD-DCRDADLV 78 (148)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH------TTSSSS--------CCEEEECCGG-GTTTCSEE
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC------ccccCC--------CeEEEECCHH-HhccceeE
Confidence 68899999999998876 7999999987653222211111 101000 1112245665 68999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHh-ccCCC-CCcEEEe
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLS-EHSTH-RSQFIVA 252 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la-~~~~~-~~r~ig~ 252 (290)
|.+.-. |..+.+++.+++.++.+...++. ||---+ ++.++ +.... |.|++|+
T Consensus 79 vitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~-~t~~~~k~sg~p~~rViG~ 147 (148)
T d1ldna1 79 VICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDI-LTYATWKFSGLPHERVIGS 147 (148)
T ss_dssp EECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHH-HHHHHHHHHTCCGGGEEEC
T ss_pred EEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHH-HHHHHHHHHCcChhheecC
Confidence 975432 35566777888998876665444 333332 33333 33343 4788886
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.11 E-value=0.00084 Score=51.35 Aligned_cols=115 Identities=13% Similarity=0.175 Sum_probs=67.6
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|..++..|. ++.++|++++....-...+.+. . .... .....+.|+++ +++||+|
T Consensus 13 aG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a------~-~~~~--------~~~~~~~d~~~-~~~adiv 76 (146)
T d1ez4a1 13 DGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA------Q-AFTA--------PKKIYSGEYSD-CKDADLV 76 (146)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG------G-GGSC--------CCEEEECCGGG-GTTCSEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc------c-cccC--------CceEeeccHHH-hccccEE
Confidence 68899999999998874 8999999987543211111110 0 0011 12334567774 7999999
Q ss_pred EEccccc--------------hHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHhccCCC-CCcEEEe
Q psy17416 200 QESVPEI--------------LQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLSEHSTH-RSQFIVA 252 (290)
Q Consensus 200 ieavpe~--------------~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la~~~~~-~~r~ig~ 252 (290)
+.+.... ..+.+++..+|.+..+...++. ||-.-.....+...... |.|++|+
T Consensus 77 vitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~ 145 (146)
T d1ez4a1 77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS 145 (146)
T ss_dssp EECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence 9875322 2345667777888765554443 44332222233344444 4688886
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.10 E-value=0.0013 Score=50.01 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=67.7
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..++..|. ++.++|++++....-...+.+... ... ...++..+.|++ +++++|+|
T Consensus 8 aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~------~~~-------~~~~i~~~~d~~-~~~~adiV 73 (142)
T d1ojua1 8 AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA------GID-------KYPKIVGGADYS-LLKGSEII 73 (142)
T ss_dssp CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH------TTT-------CCCEEEEESCGG-GGTTCSEE
T ss_pred cCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc------ccC-------CCCccccCCCHH-HhccccEE
Confidence 58899999999888775 799999998765321122222110 000 112455567776 68999999
Q ss_pred EEccc--------------cchHHHHHHHHHHhhhCCCCcEEEeCCCCcC-HHH-HhccCC-CCCcEEEe
Q psy17416 200 QESVP--------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFL-PSV-LSEHST-HRSQFIVA 252 (290)
Q Consensus 200 ieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~~-la~~~~-~~~r~ig~ 252 (290)
+.+.. .+..+-+++..++.++.+ +++++.-|-... ++. +..... .|.|++|+
T Consensus 74 vitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~k~sg~p~~rViG~ 142 (142)
T d1ojua1 74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMTYIMWKESGKPRNEVFGM 142 (142)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred EEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC-CcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence 98764 233345556667777765 455543222221 122 223334 35788885
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.04 E-value=0.00073 Score=51.33 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=67.2
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..++..++..|. ++.++|.+++........+...... ......+..+++.+ ++++||+|
T Consensus 8 aG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~-------------~~~~~~i~~~~~~~-~~~dadvv 73 (142)
T d1guza1 8 AGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV-------------GLFDTKVTGSNDYA-DTANSDIV 73 (142)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH-------------HTCCCEEEEESCGG-GGTTCSEE
T ss_pred cCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccch-------------hcccceEEecCCHH-HhcCCeEE
Confidence 58899999999998874 8999999987554322211111100 00112344456655 68999999
Q ss_pred EEccc--------------cchHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHh----ccCCC-CCcEEEe
Q psy17416 200 QESVP--------------EILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLS----EHSTH-RSQFIVA 252 (290)
Q Consensus 200 ieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la----~~~~~-~~r~ig~ 252 (290)
+.+.- .|..+.+++.+.+.++++...++. || |+..+. ..... +.|++|+
T Consensus 74 vitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN----Pvd~~~~~~~~~sg~p~~rviG~ 142 (142)
T d1guza1 74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN----PLDIMTHVAWVRSGLPKERVIGM 142 (142)
T ss_dssp EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS----SHHHHHHHHHHHHCSCGGGEEEE
T ss_pred EEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC----ChHHHHHHHHHHhCCChHhEeeC
Confidence 98852 223355667778888875544333 33 333322 22333 4688885
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.00 E-value=0.00069 Score=52.06 Aligned_cols=102 Identities=10% Similarity=0.106 Sum_probs=78.7
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCC-CCee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLV 79 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~-~~lv 79 (290)
++|.++.++++|+|+=||+- ..-.+++ +...++.++.|-++++++++|.+.+....+++-+++.-|+.. ....
T Consensus 48 ~~~~~~~~~~~dvIilavkp--~~~~~vl----~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~ 121 (152)
T d2ahra2 48 AMSHQDLIDQVDLVILGIKP--QLFETVL----KPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSST 121 (152)
T ss_dssp CSSHHHHHHTCSEEEECSCG--GGHHHHH----TTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEE
T ss_pred echhhhhhhccceeeeecch--HhHHHHh----hhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccce
Confidence 35788899999999999953 3334444 345678888899999999999998876667877765444443 3666
Q ss_pred eEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 80 EIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 80 Eiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
-+..+..++++..+.+.+++..+|+ ++.+
T Consensus 122 ~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 150 (152)
T d2ahra2 122 ALTGNALVSQELQARVRDLTDSFGS-TFDI 150 (152)
T ss_dssp EEEECTTCCHHHHHHHHHHHHTTEE-EEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence 7778888999999999999999997 4544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.99 E-value=0.0013 Score=49.98 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=69.6
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..+...|+ ++.++|.+++....-...+++. ........+..+++++ ++++||+|
T Consensus 9 aG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a--------------~~~~~~~~i~~~~~~~-~~~daDvV 73 (143)
T d1llda1 9 AGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG--------------SSFYPTVSIDGSDDPE-ICRDADMV 73 (143)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT--------------GGGSTTCEEEEESCGG-GGTTCSEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc--------------cccCCCceeecCCCHH-HhhCCcEE
Confidence 58899999999988886 8999999987643211111111 0001113344466776 58999999
Q ss_pred EEccc--------------cchHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHh-ccCC-CCCcEEEe
Q psy17416 200 QESVP--------------EILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLS-EHST-HRSQFIVA 252 (290)
Q Consensus 200 ieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la-~~~~-~~~r~ig~ 252 (290)
+.+.- .|..+.+++..++.+..+...++. ||--- .++.++ +... .|.|++|+
T Consensus 74 VitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvD-vmt~~~~~~sg~p~~rViG~ 142 (143)
T d1llda1 74 VITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD-IATHVAQKLTGLPENQIFGS 142 (143)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH-HHHHHHHHHHTCCTTSEEEC
T ss_pred EEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchH-HHHHHHHHHHCCChhhccCC
Confidence 97643 245567777788888876665443 33222 223333 2333 35788886
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.79 E-value=0.007 Score=47.87 Aligned_cols=75 Identities=15% Similarity=0.302 Sum_probs=49.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH----HHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI----QHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAI 197 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i----~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aD 197 (290)
+|.+|..+|..++ .|++|..||.+++.++...+.. +..++.+.+. ...++..+++...+..++|
T Consensus 8 lG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 75 (196)
T d1dlja2 8 SGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-----------KQLSIKATLDSKAAYKEAE 75 (196)
T ss_dssp CSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-----------SCCCEEEESCHHHHHHHCS
T ss_pred CChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhh-----------hhhhhhccchhhhhhhccc
Confidence 6889999988776 5999999999999887655310 0111111110 0123344556666788999
Q ss_pred EEEEccccchH
Q psy17416 198 FIQESVPEILQ 208 (290)
Q Consensus 198 lVieavpe~~~ 208 (290)
+++.|+|.+.+
T Consensus 76 ii~v~vpt~~~ 86 (196)
T d1dlja2 76 LVIIATPTNYN 86 (196)
T ss_dssp EEEECCCCCEE
T ss_pred cccccCCcccc
Confidence 99999997765
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.68 E-value=0.0087 Score=45.01 Aligned_cols=114 Identities=11% Similarity=0.147 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..++..|+ ++.++|++++.+..-...+... ... ... ..+ .+.+++ ++++||+|
T Consensus 8 aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~------~~~-~~~-------~~~-~~~~~~-~~~~adiv 71 (140)
T d1a5za1 8 LGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG------TPF-TRR-------ANI-YAGDYA-DLKGSDVV 71 (140)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH------GGG-SCC-------CEE-EECCGG-GGTTCSEE
T ss_pred cCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccc------ccc-ccc-------ccc-cCCcHH-HhcCCCEE
Confidence 57889999988887774 8999999987554222111111 000 010 112 234555 58999999
Q ss_pred EEcccc--------------chHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHHh-ccCC-CCCcEEEe
Q psy17416 200 QESVPE--------------ILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVLS-EHST-HRSQFIVA 252 (290)
Q Consensus 200 ieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~la-~~~~-~~~r~ig~ 252 (290)
+.+.-. |..+-+++.+++.++++...++. ||--. .++.++ +... .|.|++|.
T Consensus 72 vitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd-~~t~~~~k~sg~p~~rViGt 140 (140)
T d1a5za1 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD-VLTYFFLKESGMDPRKVFGS 140 (140)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH-HHHHHHHHHHTCCTTTEEEC
T ss_pred EEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHH-HHHHHHHHHHCcCccceeCc
Confidence 988521 33355666678888876555443 32221 123332 2333 35678773
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.62 E-value=0.0014 Score=49.79 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|..|..+|..++..+. ++.++|.+++........+..... ......++..+.++++ ++++|+||
T Consensus 9 aG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~-------------~~~~~~~i~~~~d~~~-~~~advvv 74 (142)
T d1uxja1 9 AGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP-------------IEGFDVRVTGTNNYAD-TANSDVIV 74 (142)
T ss_dssp CSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHH-------------HHTCCCCEEEESCGGG-GTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccc-------------ccCCCCEEEecCcHHH-hcCCCEEE
Confidence 58889999998888775 899999988654332221111100 0001123455677875 79999999
Q ss_pred Ecccc--------------chHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHhcc-CCC-CCcEEE
Q psy17416 201 ESVPE--------------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH-STH-RSQFIV 251 (290)
Q Consensus 201 eavpe--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la~~-~~~-~~r~ig 251 (290)
.+... |..+-+++..++.++.+...++..+.---.++.++.. ... |.|++|
T Consensus 75 itag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~~~~sglp~~rViG 141 (142)
T d1uxja1 75 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKERVIG 141 (142)
T ss_dssp ECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred EeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence 88742 1224456667788876655444422221222333332 233 467777
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.62 E-value=0.00049 Score=54.66 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=70.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.++..+...|.+|..||+++.. + ......++++.+++||+|+.
T Consensus 50 ~G~IG~~va~~l~~~g~~v~~~d~~~~~----------------------~---------~~~~~~~l~ell~~sDiv~~ 98 (181)
T d1qp8a1 50 LGEIGTRVGKILAALGAQVRGFSRTPKE----------------------G---------PWRFTNSLEEALREARAAVC 98 (181)
T ss_dssp CSTHHHHHHHHHHHTTCEEEEECSSCCC----------------------S---------SSCCBSCSHHHHTTCSEEEE
T ss_pred cccccccceeeeeccccccccccccccc----------------------c---------ceeeeechhhhhhccchhhc
Confidence 6899999999999999999999987521 1 11234678899999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCC-CCCcEEEec
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHST-HRSQFIVAH 253 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~-~~~r~ig~H 253 (290)
++|-+.+-+.-+=++....++++++++..+-+ +.-+.+.+.+. .+..-.++-
T Consensus 99 ~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalD 153 (181)
T d1qp8a1 99 ALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 153 (181)
T ss_dssp CCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEES
T ss_pred ccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEe
Confidence 99988765544446677789999999743333 34445555544 233333444
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.0052 Score=47.51 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=61.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|.++|++|...-+|.- ++ .. ...+++++..+|++|-
T Consensus 32 yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~---------------dG----------~~-v~~~~~a~~~adivvt 85 (163)
T d1li4a1 32 YGDVGKGCAQALRGFGARVIITEIDPINALQAAM---------------EG----------YE-VTTMDEACQEGNIFVT 85 (163)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---------------TT----------CE-ECCHHHHTTTCSEEEE
T ss_pred cccccHHHHHHHHhCCCeeEeeecccchhHHhhc---------------Cc----------eE-eeehhhhhhhccEEEe
Confidence 6899999999999999999999999954322221 12 11 3467788999999988
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC---CcCHHHHhc
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS---SFLPSVLSE 241 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts---~~~~~~la~ 241 (290)
|.--.--+. .+--+.+++++|+++.++ -+.+..+.+
T Consensus 86 aTGn~~vI~----~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~ 124 (163)
T d1li4a1 86 TTGCIDIIL----GRHFEQMKDDAIVCNIGHFDVEIDVKWLNE 124 (163)
T ss_dssp CSSCSCSBC----HHHHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred cCCCccchh----HHHHHhccCCeEEEEeccccceecHHHHhh
Confidence 766422222 344457899999985443 344445543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.57 E-value=0.0081 Score=45.57 Aligned_cols=115 Identities=15% Similarity=0.121 Sum_probs=64.1
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..+...|. ++.++|.+++....-...+.+.. ..... ...+ .+.+++ ++++||+|
T Consensus 9 aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~------~~~~~-------~~~~-~~~d~~-~l~~adiV 73 (146)
T d1hyha1 9 LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM------ANLEA-------HGNI-VINDWA-ALADADVV 73 (146)
T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG------GGSSS-------CCEE-EESCGG-GGTTCSEE
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc------cccCC-------ccce-eccCHH-HhccccEE
Confidence 58889999998888774 89999999876432222122110 00000 0122 245666 58999999
Q ss_pred EEcccc------------------chHHHHHHHHHHhhhCCCCcEEEeCCCCc-CHHHHh-ccCCC-CCcEEEe
Q psy17416 200 QESVPE------------------ILQIKHQVYRAIDIFMSSNTILSSSTSSF-LPSVLS-EHSTH-RSQFIVA 252 (290)
Q Consensus 200 ieavpe------------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~-~~~~la-~~~~~-~~r~ig~ 252 (290)
|.+... |..+-+++.+++.+++++ ++++.-|-.. .++.++ +.... +.|++|.
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~-aivivvtNPvD~~t~~~~k~sg~p~~rViGt 146 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH-GVLVVISNPVDVITALFQHVTGFPAHKVIGT 146 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCC-SEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCC-eEEEEecCcHHHHHHHHHHHhCCCccceeCc
Confidence 987441 233455666677776654 5444222211 233333 23343 4677773
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=96.53 E-value=0.00078 Score=53.91 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=61.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..+...|.+|..||+.......... .......++++.++.||+|+.
T Consensus 55 ~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~-------------------------~~~~~~~~l~~ll~~sD~v~l 109 (191)
T d1gdha1 55 FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS-------------------------YQATFHDSLDSLLSVSQFFSL 109 (191)
T ss_dssp CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH-------------------------HTCEECSSHHHHHHHCSEEEE
T ss_pred cccchHHHHHHHHhhccccccccccccccchhhc-------------------------ccccccCCHHHHHhhCCeEEe
Confidence 6899999999999999999999976442211111 111234678889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++|-+.+-+.-+=++....++++++++.
T Consensus 110 ~~plt~~T~~li~~~~l~~mk~~a~lIN 137 (191)
T d1gdha1 110 NAPSTPETRYFFNKATIKSLPQGAIVVN 137 (191)
T ss_dssp CCCCCTTTTTCBSHHHHTTSCTTEEEEE
T ss_pred cCCCCchHhheecHHHhhCcCCccEEEe
Confidence 9998876655454677778999999973
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.49 E-value=0.0054 Score=45.35 Aligned_cols=89 Identities=10% Similarity=0.061 Sum_probs=58.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh-cccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~-l~~aDlVi 200 (290)
+|.+|+.++..|.+.|++|+++|.+++.++++.. .|.. ...+..+-...+.++ +.+||.||
T Consensus 8 ~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-----------~~~~-------~~~gd~~~~~~l~~a~i~~a~~vi 69 (134)
T d2hmva1 8 LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-----------YATH-------AVIANATEENELLSLGIRNFEYVI 69 (134)
T ss_dssp CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-----------TCSE-------EEECCTTCTTHHHHHTGGGCSEEE
T ss_pred CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-----------hCCc-------ceeeecccchhhhccCCccccEEE
Confidence 6899999999999999999999999998876543 1110 011111112234433 78999999
Q ss_pred EccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 201 ESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 201 eavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
-+++++... ..+...+.+..+...+++-
T Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 70 VAIGANIQA-STLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp ECCCSCHHH-HHHHHHHHHHTTCSEEEEE
T ss_pred EEcCchHHh-HHHHHHHHHHcCCCcEEee
Confidence 999988643 2223344455565566653
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.38 E-value=0.0069 Score=46.76 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=66.8
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|.+|..+|+.+...|+ ++.++|.+++....-...+.+. ..... ...+....+++ .+++||+|
T Consensus 28 aG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~-------~~~~~-------~~~~~~~~d~~-~~~~adiV 92 (160)
T d1i0za1 28 VGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG-------SLFLQ-------TPKIVADKDYS-VTANSKIV 92 (160)
T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT-------GGGCC-------CSEEEECSSGG-GGTTCSEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc-------ccccC-------CCeEEeccchh-hcccccEE
Confidence 69999999999999987 8999999987653211111110 00000 12233356666 58999999
Q ss_pred EEccc--------------cchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh-ccCCCC-CcEEE
Q psy17416 200 QESVP--------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS-EHSTHR-SQFIV 251 (290)
Q Consensus 200 ieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la-~~~~~~-~r~ig 251 (290)
+.+.- .|..+-+++..++.+..+++.++..+.---.++.++ +....| .|++|
T Consensus 93 VitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~~k~sglp~~rViG 160 (160)
T d1i0za1 93 VVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIG 160 (160)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence 97532 233456667778888766555444222222233333 333444 67776
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=96.36 E-value=0.011 Score=46.05 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=53.2
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc------------
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP------------ 204 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp------------ 204 (290)
+.++.++|++++.++......++....+ ...-++..++|..+++++||+|+-++-
T Consensus 31 ~~eivL~Did~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~td~~eaL~dad~Vv~~~~~g~~~~~~~~~~ 97 (171)
T d1obba1 31 GSTVTLMDIDEERLDAILTIAKKYVEEV-------------GADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQ 97 (171)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHHHHT-------------TCCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHH
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHHHhc-------------CCCeEEEEeCChhhcccCCCeEeeecccccccceeeehh
Confidence 4599999999998765444444433211 011356668899999999999997642
Q ss_pred ----------------------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 205 ----------------------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 205 ----------------------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
.+..+-+++.+++.++++ ++++.
T Consensus 98 i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p-~a~~i 148 (171)
T d1obba1 98 IGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSP-KAWYL 148 (171)
T ss_dssp HHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred cchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCc-CeEEE
Confidence 145567788888988875 45554
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.31 E-value=0.0016 Score=52.03 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=70.8
Q ss_pred ceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 113 IRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 113 ~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
+-|.++ +|.+|+.+|..+...|.+|..||+....-.. . ..++....++++.
T Consensus 51 tvgIiG---~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--~------------------------~~~~~~~~~l~~l 101 (193)
T d1mx3a1 51 TLGIIG---LGRVGQAVALRAKAFGFNVLFYDPYLSDGVE--R------------------------ALGLQRVSTLQDL 101 (193)
T ss_dssp EEEEEC---CSHHHHHHHHHHHTTTCEEEEECTTSCTTHH--H------------------------HHTCEECSSHHHH
T ss_pred eEEEec---cccccccceeeeeccccceeeccCcccccch--h------------------------hhccccccchhhc
Confidence 445555 7999999999999999999999985432100 0 0122335788999
Q ss_pred cccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccC
Q psy17416 193 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHS 243 (290)
Q Consensus 193 l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~ 243 (290)
++.||+|+.++|-+.+-+.-+=++....++++++++..+-+ +.-..+...+
T Consensus 102 l~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL 154 (193)
T d1mx3a1 102 LFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL 154 (193)
T ss_dssp HHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred cccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHH
Confidence 99999999999977765554446677789999999733323 3333555544
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.26 E-value=0.0028 Score=48.00 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=60.7
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|..+...|+ ++.++|++++....-. +|- .... . .. ....+ .+.+++ ++++||+|
T Consensus 9 aG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a------~Dl--~~~~--~-~~---~~~~~-~~~~~~-~~~~adiv 72 (142)
T d1y6ja1 9 AGFVGASAAFTMALRQTANELVLIDVFKEKAIGEA------MDI--NHGL--P-FM---GQMSL-YAGDYS-DVKDCDVI 72 (142)
T ss_dssp CSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHH------HHH--TTSC--C-CT---TCEEE-C--CGG-GGTTCSEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeccCCccceee------eee--ccCc--c-cC---CCeeE-eeCcHH-HhCCCceE
Confidence 58899999999988876 8999999987532111 110 0000 0 00 00112 234555 58999999
Q ss_pred EEccc--c------------chHHHHHHHHHHhhhCCCCcEEE-eCCCCcCHHHH-hccCCC-CCcEEEe
Q psy17416 200 QESVP--E------------ILQIKHQVYRAIDIFMSSNTILS-SSTSSFLPSVL-SEHSTH-RSQFIVA 252 (290)
Q Consensus 200 ieavp--e------------~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~l-a~~~~~-~~r~ig~ 252 (290)
+.+.- . |..+-+++.+++.++.+...++. ||-.-. ++.+ .+.... |.|++|+
T Consensus 73 vitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv-~t~~~~k~sg~p~~rViG~ 141 (142)
T d1y6ja1 73 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDI-ITYMIQKWSGLPVGKVIGS 141 (142)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHH-HHHHHHHHHTCCTTTEEEC
T ss_pred EEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHH-HHHHHHHHHCCCccceecC
Confidence 98732 2 23344566667888776554443 332222 2332 233343 4688886
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.19 E-value=0.016 Score=44.84 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=44.3
Q ss_pred ccccCCchHhhcccCcEEEEccc----------------------------------cchHHHHHHHHHHhhhCCCCcEE
Q psy17416 182 LISGTPVLRECLEDAIFIQESVP----------------------------------EILQIKHQVYRAIDIFMSSNTIL 227 (290)
Q Consensus 182 ~i~~~~~l~~~l~~aDlVieavp----------------------------------e~~~~k~~~~~~l~~~~~~~~ii 227 (290)
++..++|..+++++||+||.+.. .+..+-+++.+++.++++ ++++
T Consensus 64 ~~~~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~p-da~~ 142 (169)
T d1s6ya1 64 EIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP-DAWL 142 (169)
T ss_dssp EEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEE
T ss_pred eeeecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCC-CeEE
Confidence 45567888888999999999985 244456778888999864 4555
Q ss_pred EeCCCCc-CHHHHhccCCCCCcEEEe
Q psy17416 228 SSSTSSF-LPSVLSEHSTHRSQFIVA 252 (290)
Q Consensus 228 ~s~ts~~-~~~~la~~~~~~~r~ig~ 252 (290)
..-|-.. .++........+.|++|+
T Consensus 143 i~vtNPvdv~t~~~~k~~p~~kviGl 168 (169)
T d1s6ya1 143 INFTNPAGMVTEAVLRYTKQEKVVGL 168 (169)
T ss_dssp EECSSSHHHHHHHHHHHCCCCCEEEC
T ss_pred EEeCChHHHHHHHHHHHCCCCCEEee
Confidence 4322111 123333333335688886
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=96.18 E-value=0.002 Score=51.21 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=68.2
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..+...|.+|..||+....-..... ..+....++++.+++||+|+.
T Consensus 52 ~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~-------------------------~~~~~~~~l~~~l~~sD~v~~ 106 (188)
T d2naca1 52 AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE-------------------------LNLTWHATREDMYPVCDVVTL 106 (188)
T ss_dssp CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH-------------------------HTCEECSSHHHHGGGCSEEEE
T ss_pred ccccchhhhhhhhccCceEEEEeecccccccccc-------------------------ccccccCCHHHHHHhccchhh
Confidence 7899999999999999999999975321111001 112345788889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHST 244 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~ 244 (290)
++|-+.+-+.-+-++..+.++++++++..+- -+.-..+...+.
T Consensus 107 ~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~ 151 (188)
T d2naca1 107 NCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 151 (188)
T ss_dssp CSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHh
Confidence 9997776555555777788999999873332 333345555443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.18 E-value=0.002 Score=51.74 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=65.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|..||+....... . . .. ...++++.+++||+|+.
T Consensus 51 ~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~-----------~--------------~~-~~~~l~~~l~~sDii~~ 102 (197)
T d1j4aa1 51 TGHIGQVFMQIMEGFGAKVITYDIFRNPELE--K-----------K--------------GY-YVDSLDDLYKQADVISL 102 (197)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--H-----------T--------------TC-BCSCHHHHHHHCSEEEE
T ss_pred ccccchhHHHhHhhhcccccccCcccccccc--c-----------c--------------ee-eeccccccccccccccc
Confidence 7999999999999999999999976432110 0 0 01 23678889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHS 243 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~ 243 (290)
++|-+.+-+.-+-++....++++++++..+-+ +.-..+...+
T Consensus 103 ~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL 146 (197)
T d1j4aa1 103 HVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGL 146 (197)
T ss_dssp CSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred cCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHH
Confidence 99977765554446666789999998733322 3333454444
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.12 E-value=0.015 Score=45.10 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=50.8
Q ss_pred ceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEcccc------------
Q psy17416 138 YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE------------ 205 (290)
Q Consensus 138 ~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe------------ 205 (290)
-++.++|.+++.++......+...... ....++..++|..+++++||+||.+.--
T Consensus 33 ~eivL~Did~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i 99 (167)
T d1u8xx1 33 RKLKLYDNDKERQDRIAGACDVFIREK-------------APDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQI 99 (167)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHH-------------CTTSEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHH
T ss_pred CEEEEEcCChhHHHHHHHHHHHHHHHh-------------CCCcceEecCChhhccCCCCEEEECCCcCCCCceeHHHhh
Confidence 489999999998764444333332211 1113456678888899999999998631
Q ss_pred ----------------------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 206 ----------------------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 206 ----------------------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
+..+-+++.+++.+++ |++++.
T Consensus 100 ~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li 143 (167)
T d1u8xx1 100 PLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWML 143 (167)
T ss_dssp HHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred chhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEE
Confidence 2345567778888887 555554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.05 E-value=0.011 Score=44.59 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|..|..+|+.+...|+ ++.++|.++.. -.++. +. . .............++..+++++||+||
T Consensus 10 G~VG~~~A~~l~~~~~~~elvLiDi~~~~-~~a~D-----l~--------~--~~~~~~~~~~~~~~~~~~~~~~aDivV 73 (144)
T d1mlda1 10 GGIGQPLSLLLKNSPLVSRLTLYDIAHTP-GVAAD-----LS--------H--IETRATVKGYLGPEQLPDCLKGCDVVV 73 (144)
T ss_dssp STTHHHHHHHHHTCTTCSEEEEEESSSHH-HHHHH-----HT--------T--SSSSCEEEEEESGGGHHHHHTTCSEEE
T ss_pred ChHHHHHHHHHHhCCccceEEEEeccccc-hhhHH-----Hh--------h--hhhhcCCCeEEcCCChHHHhCCCCEEE
Confidence 8899999999998886 79999997632 11111 00 0 001111122223456667799999999
Q ss_pred Eccc--------------cchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 201 ESVP--------------EILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 201 eavp--------------e~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
.+.- .|..+-+++.+++.++.+ ++++..-|
T Consensus 74 itag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvt 117 (144)
T d1mlda1 74 IPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIIS 117 (144)
T ss_dssp ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECS
T ss_pred ECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEec
Confidence 7643 344566777788888855 45554333
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.02 E-value=0.012 Score=44.53 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=74.6
Q ss_pred hcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCCCeee-EeeCC
Q psy17416 7 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAA 85 (290)
Q Consensus 7 ~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~~lvE-iv~~~ 85 (290)
+++++|+||=|++ . +.+-.-++++.+.+.++.|-.++.++..|.+.+....+++.+.+..|.....=+- +..+.
T Consensus 54 ~v~~~Div~lavk--P---~~~~~v~~~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~ 128 (152)
T d1yqga2 54 ELHSDDVLILAVK--P---QDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEA 128 (152)
T ss_dssp CCCTTSEEEECSC--H---HHHHHHHTTCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCT
T ss_pred cccccceEEEecC--H---HHHHHhHHHHhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCC
Confidence 5889999999985 2 2233334455567889999999999999999998888999999999988665444 45667
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy17416 86 WTSERVITRTREIMTEIGM 104 (290)
Q Consensus 86 ~t~~~~~~~~~~~~~~lgk 104 (290)
..+++-.+.+.+++..+|+
T Consensus 129 ~~~~~~~~~v~~l~~~~G~ 147 (152)
T d1yqga2 129 EVSETDRRIADRIMKSVGL 147 (152)
T ss_dssp TSCHHHHHHHHHHHHTTEE
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 7789999999999999997
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.89 E-value=0.013 Score=45.00 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=56.2
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+|..|..+|+.+...|+ ++.++|.+++....-...+.+. ....+ ...+....+++ .+++||+|
T Consensus 27 aG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~-------~~~~~-------~~~~~~~~d~~-~~~~adiv 91 (159)
T d2ldxa1 27 VGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG-------SLFLS-------TPKIVFGKDYN-VSANSKLV 91 (159)
T ss_dssp CSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT-------TTTCS-------CCEEEEESSGG-GGTTEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc-------chhcC-------CCeEEeccchh-hhccccEE
Confidence 69999999999998886 8999999986543222222111 00001 01223346666 47999999
Q ss_pred EEccc--------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 200 QESVP--------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 200 ieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|.+.- .|..+.+++..++.+..+.+.++.
T Consensus 92 vitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~iviv 134 (159)
T d2ldxa1 92 IITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIV 134 (159)
T ss_dssp EECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEE
T ss_pred EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 97653 244455666666777655544433
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.89 E-value=0.021 Score=43.07 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=61.2
Q ss_pred chhHHHHHHHHHHcCc--eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 123 GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~--~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
|..|..+|..++..|+ ++.++|+++.. +++...... +.... ...... ..-.+..+.+++ ++++||+||
T Consensus 10 G~VG~~~a~~l~~~~l~~el~L~D~~~~~-~~~~g~a~D-l~~~~-~~~~~~------~~~~~~~~~d~~-~l~~aDvVV 79 (145)
T d1hyea1 10 GRVGSATALLLAKEPFMKDLVLIGREHSI-NKLEGLRED-IYDAL-AGTRSD------ANIYVESDENLR-IIDESDVVI 79 (145)
T ss_dssp SHHHHHHHHHHHTCTTCCEEEEEECGGGH-HHHHHHHHH-HHHHH-TTSCCC------CEEEEEETTCGG-GGTTCSEEE
T ss_pred ChHHHHHHHHHHhCCcccccccccchhhh-Hhhhccccc-chhcc-cccccC------CccccCCcchHH-HhccceEEE
Confidence 7899999999998885 89999987532 222111111 11110 000000 001122234555 689999999
Q ss_pred Ecc--cc------------chHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh---c-cCC-CCCcEEE
Q psy17416 201 ESV--PE------------ILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS---E-HST-HRSQFIV 251 (290)
Q Consensus 201 eav--pe------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la---~-~~~-~~~r~ig 251 (290)
.+. |. |..+-+++.+++.++++ +.+++- +-|+..+. . ... .+.|++|
T Consensus 80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iivV---tNPvD~mt~~~~k~sg~p~~rViG 145 (145)
T d1hyea1 80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFVI---TNPVDVMTYKALVDSKFERNQVFG 145 (145)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEC---SSSHHHHHHHHHHHHCCCTTSEEE
T ss_pred EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEEE---cCchHHHHHHHHHHHCcCcccccC
Confidence 873 22 22244556667888875 455542 24554333 2 223 3456665
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=95.85 E-value=0.017 Score=44.40 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=57.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|..|+.+|+.+...|..|.+++++|-..-+|.- ++ .. ..+++++++.+|++|-
T Consensus 31 YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~m---------------dG----------f~-v~~~~~a~~~aDi~vT 84 (163)
T d1v8ba1 31 YGDVGKGCASSMKGLGARVYITEIDPICAIQAVM---------------EG----------FN-VVTLDEIVDKGDFFIT 84 (163)
T ss_dssp CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT---------------TT----------CE-ECCHHHHTTTCSEEEE
T ss_pred ccccchhHHHHHHhCCCEEEEEecCchhhHHHHh---------------cC----------Cc-cCchhHccccCcEEEE
Confidence 5889999999999999999999999954322211 12 22 3677889999999998
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSST 231 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~t 231 (290)
++.-.--+. .+.-+.+++++|++..+
T Consensus 85 aTGn~~vI~----~~h~~~MKdgaIl~N~G 110 (163)
T d1v8ba1 85 CTGNVDVIK----LEHLLKMKNNAVVGNIG 110 (163)
T ss_dssp CCSSSSSBC----HHHHTTCCTTCEEEECS
T ss_pred cCCCCcccc----HHHHHHhhCCeEEEecc
Confidence 877432222 33445789999997433
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.69 E-value=0.0069 Score=46.75 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 160 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~ 160 (290)
+|.||+.+|..+++.|++|.+++|+++.++...+.+.+.
T Consensus 9 aG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~ 47 (212)
T d1jaya_ 9 TGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI 47 (212)
T ss_dssp TSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 588999999999999999999999999998887766654
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.66 E-value=0.011 Score=44.72 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=70.1
Q ss_pred cHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCC--hHHHhcccCCCCceeeeccCCCCCCCCee-
Q psy17416 3 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPYFIPLV- 79 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~--~~~l~~~~~~~~r~~g~hf~~P~~~~~lv- 79 (290)
+.++.+.++|+++-++|- ..-.+++.++-...++++++.-.+|.-+ ...+.+. .+.+++|.|+..-+......
T Consensus 46 ~~~~~~~~~~~v~~~~~~--~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g 121 (152)
T d2pv7a2 46 VAESILANADVVIVSVPI--NLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAK 121 (152)
T ss_dssp GHHHHHTTCSEEEECSCG--GGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTT
T ss_pred ccchhhhhccccccccch--hhheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCC
Confidence 445678999999999984 4556788999999999998875554322 2244443 36789999997766433211
Q ss_pred -eEeeCCCCCHHHHHHHHHHHHHhCCccEE
Q psy17416 80 -EIVPAAWTSERVITRTREIMTEIGMKPVT 108 (290)
Q Consensus 80 -Eiv~~~~t~~~~~~~~~~~~~~lgk~~v~ 108 (290)
-++..+..+++.++.+.++++.+|.+.+.
T Consensus 122 ~~~v~~~g~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 122 QVVVRCDGRFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp CEEEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred cEEEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence 12222335667889999999999986553
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.04 Score=42.17 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=33.6
Q ss_pred CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEEccc
Q psy17416 137 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 204 (290)
Q Consensus 137 G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavp 204 (290)
+-++.++|.+++....+....+.. .. ....+..+++..+++++||+||.+.-
T Consensus 29 ~~el~L~Did~~k~~~~~d~~~~~----~~------------~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 29 IDEVIFYDIDEEKQKIVVDFVKRL----VK------------DRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHH----HT------------TSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred ccEEEEEecCcHHHHHHHHHHHhh----hc------------cCceEEEecCcccccCCCCEEEEecc
Confidence 358999999998765433222211 11 01234456777888999999998764
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.56 E-value=0.0061 Score=48.10 Aligned_cols=96 Identities=22% Similarity=0.170 Sum_probs=67.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.++..+...|.+|..||+....-..... .+. ..++++.++.||+|+.
T Consensus 52 ~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~--------------------------~~~-~~~l~ell~~sDiv~~ 104 (184)
T d1ygya1 52 LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL--------------------------GIE-LLSLDDLLARADFISV 104 (184)
T ss_dssp CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH--------------------------TCE-ECCHHHHHHHCSEEEE
T ss_pred ccchhHHHHHHhhhccceEEeecCCCChhHHhhc--------------------------Cce-eccHHHHHhhCCEEEE
Confidence 6899999999999999999999976532211100 111 3578889999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHST 244 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~ 244 (290)
++|-+.+-+.-+=++....++++++++..+- -+.-+.+...+.
T Consensus 105 ~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~ 149 (184)
T d1ygya1 105 HLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT 149 (184)
T ss_dssp CCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred cCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHh
Confidence 9998887655444677778999999973332 333335555443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.46 E-value=0.02 Score=43.45 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=63.9
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|..|..+|..+...+. ++.++|++++....-...+.+... +.. ....+..+.+++ +++++|+|+
T Consensus 11 aG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~-~~~------------~~~~v~~~~~~~-~~~~advvv 76 (150)
T d1t2da1 11 SGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNV-MAY------------SNCKVSGSNTYD-DLAGADVVI 76 (150)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHH-HHT------------CCCCEEEECCGG-GGTTCSEEE
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhcc-ccC------------CCcEEEeccccc-ccCCCcEEE
Confidence 58889999988887775 789999988655432222222110 000 001222234555 589999999
Q ss_pred Ecccc-------------------chHHHHHHHHHHhhhCCCCcEEEeCCCCc-CHHHHhc-cCC-CCCcEEEe
Q psy17416 201 ESVPE-------------------ILQIKHQVYRAIDIFMSSNTILSSSTSSF-LPSVLSE-HST-HRSQFIVA 252 (290)
Q Consensus 201 eavpe-------------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~-~~~~la~-~~~-~~~r~ig~ 252 (290)
.+.-. |..+-+++..++.+.++ +++++.-|-.. .++.++. ... .|.|++|+
T Consensus 77 itag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~ 149 (150)
T d1t2da1 77 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL 149 (150)
T ss_dssp ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred EecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence 87652 11245566667787765 45544322211 1233332 223 35788886
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.024 Score=42.77 Aligned_cols=91 Identities=23% Similarity=0.213 Sum_probs=54.1
Q ss_pred cchhHHHHHHHHHHc---CceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASA---GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~---G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
.|..|..+|..+... +.++.++|..+.....++. +.. . ........+..+++++ +++++|+
T Consensus 9 aG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~D-----l~h-----~-----~~~~~~~~~~~~~~~~-~~~~aDv 72 (145)
T d2cmda1 9 AGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVD-----LSH-----I-----PTAVKIKGFSGEDATP-ALEGADV 72 (145)
T ss_dssp TSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHH-----HHT-----S-----CSSCEEEEECSSCCHH-HHTTCSE
T ss_pred CChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHH-----HHC-----C-----ccccCCcEEEcCCCcc-ccCCCCE
Confidence 478999999877543 4689999987533222221 110 0 0001112333455665 6899999
Q ss_pred EEEccc--------------cchHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVP--------------EILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
||.+.- .|..+-+++..++.++.++..++.
T Consensus 73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aiviv 116 (145)
T d2cmda1 73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGI 116 (145)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 998763 134456677778888876665444
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=95.10 E-value=0.0059 Score=46.21 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=63.0
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHhcccCCCCceeeeccCCCCCCC-----
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI----- 76 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~~~~~~~~r~~g~hf~~P~~~~----- 76 (290)
.+++++++.+|+|+=|||.+. + .+++ +++..++.++.+.++..++..+... +..+.|+..++...
T Consensus 47 ~~~~~~~~~~DiVil~v~d~~-i-~~v~---~~l~~~~~ivi~~s~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~ 116 (153)
T d2i76a2 47 ATLEKHPELNGVVFVIVPDRY-I-KTVA---NHLNLGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALE 116 (153)
T ss_dssp CSSCCCCC---CEEECSCTTT-H-HHHH---TTTCCSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGG
T ss_pred cchhhhhccCcEEEEeccchh-h-hHHH---hhhcccceeeeecccchhhhhhhhh-----ccccceeeeecccccchhh
Confidence 467788999999999999753 2 2333 3344688999998888888766543 34567765543211
Q ss_pred CeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEEe
Q psy17416 77 PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 110 (290)
Q Consensus 77 ~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v~ 110 (290)
..-.+...-..+++.++.+..+++.+|..++.+.
T Consensus 117 ~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~ 150 (153)
T d2i76a2 117 MKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP 150 (153)
T ss_dssp CGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECC
T ss_pred hccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeC
Confidence 1111111112367889999999999998888873
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.07 E-value=0.071 Score=38.93 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=55.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcC--CCCCCCChhhhhcccccCCchHh-hcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKG--CLKGSLSPEEQFGLISGTPVLRE-CLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g--~~~~~~~~~~~~~~i~~~~~l~~-~l~~aDl 198 (290)
+|.+|+.++..|.+.|++|.++|.+++.++++.+. .+ .+.+..... ..+.+ .+.++|.
T Consensus 8 ~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----------~~~~vi~Gd~~~~---------~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 8 IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDALVINGDCTKI---------KTLEDAGIEDADM 68 (132)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSSEEEESCTTSH---------HHHHHTTTTTCSE
T ss_pred CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----------hhhhhccCcccch---------hhhhhcChhhhhh
Confidence 68999999999999999999999999988765441 11 111111111 12222 2678999
Q ss_pred EEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 199 IQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 199 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
++-+++.+- ..-+...+.+.+++..+++.
T Consensus 69 vv~~t~~d~--~N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 69 YIAVTGKEE--VNLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp EEECCSCHH--HHHHHHHHHHHTTCCCEEEE
T ss_pred hcccCCcHH--HHHHHHHHHHHcCCceEEEE
Confidence 998887654 22333445555666666764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.77 E-value=0.031 Score=43.83 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=48.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|-+|..++..+++.|.+|.+.+++++.+++..+.+..... .. .....+.-..++++.+.++|++|-
T Consensus 32 sgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~--~~~~d~~~~~~~~~~~~~iDilin 98 (191)
T d1luaa1 32 TGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK-----------VN--VTAAETADDASRAEAVKGAHFVFT 98 (191)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT-----------CC--CEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc-----------hh--hhhhhcccHHHHHHHhcCcCeeee
Confidence 46789999999999999999999999998887776654321 00 000111222455667788898887
Q ss_pred ccc
Q psy17416 202 SVP 204 (290)
Q Consensus 202 avp 204 (290)
+..
T Consensus 99 ~Ag 101 (191)
T d1luaa1 99 AGA 101 (191)
T ss_dssp CCC
T ss_pred cCc
Confidence 754
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.0057 Score=48.42 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=68.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..+|..+...|.+|..||+.... . . .......++++.++.||+|+.
T Consensus 52 ~G~IG~~va~~l~~fg~~v~~~d~~~~~----------------------~-~------~~~~~~~~l~ell~~sDii~i 102 (188)
T d1sc6a1 52 YGHIGTQLGILAESLGMYVYFYDIENKL----------------------P-L------GNATQVQHLSDLLNMSDVVSL 102 (188)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSCCC----------------------C-C------TTCEECSCHHHHHHHCSEEEE
T ss_pred cccchhhhhhhcccccceEeeccccccc----------------------h-h------hhhhhhhhHHHHHhhccceee
Confidence 7899999999999999999999975421 0 0 111224678899999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCC--CcCHHHHhccCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTS--SFLPSVLSEHST 244 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~~~~~la~~~~ 244 (290)
++|-+.+-+.-+=++..+.++++++++..+- -+.-..+.+.+.
T Consensus 103 ~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~ 147 (188)
T d1sc6a1 103 HVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA 147 (188)
T ss_dssp CCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred cccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHH
Confidence 9998876655555777788999999984333 333345555553
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.43 E-value=0.082 Score=40.23 Aligned_cols=76 Identities=14% Similarity=0.062 Sum_probs=52.6
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|.||..++..+...|. +++++.|+.+..++..+.+ |. ......++.+.+.++|+||
T Consensus 32 aG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~~------------~~~~~~~~~~~l~~~Divi 89 (159)
T d1gpja2 32 AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG------------EAVRFDELVDHLARSDVVV 89 (159)
T ss_dssp CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC------------EECCGGGHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------hc------------ccccchhHHHHhccCCEEE
Confidence 69999999999999997 6999999987665443311 10 1112356777889999999
Q ss_pred Eccccch-HHHHHHHHHHhh
Q psy17416 201 ESVPEIL-QIKHQVYRAIDI 219 (290)
Q Consensus 201 eavpe~~-~~k~~~~~~l~~ 219 (290)
.|++.+. -+.++.++....
T Consensus 90 ~atss~~~ii~~~~i~~~~~ 109 (159)
T d1gpja2 90 SATAAPHPVIHVDDVREALR 109 (159)
T ss_dssp ECCSSSSCCBCHHHHHHHHH
T ss_pred EecCCCCccccHhhhHHHHH
Confidence 9997553 234566655443
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.37 E-value=0.023 Score=43.22 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|.+|+.+|..|.+.|++|+++|++.+..++..+... ... ............++.+...|.++-
T Consensus 10 aG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~----------~~~------~~~~~~~~~~~~~~~i~~~~~~i~ 73 (182)
T d1e5qa1 10 SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ----------HST------PISLDVNDDAALDAEVAKHDLVIS 73 (182)
T ss_dssp CSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCT----------TEE------EEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhccc----------ccc------cccccccchhhhHhhhhccceeEe
Confidence 6899999999999999999999999997765443100 000 000111112334556778999999
Q ss_pred ccccchH
Q psy17416 202 SVPEILQ 208 (290)
Q Consensus 202 avpe~~~ 208 (290)
+.|....
T Consensus 74 ~~~~~~~ 80 (182)
T d1e5qa1 74 LIPYTFH 80 (182)
T ss_dssp CSCGGGH
T ss_pred eccchhh
Confidence 9986653
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.34 E-value=0.022 Score=45.26 Aligned_cols=94 Identities=22% Similarity=0.242 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.+|..+...|.+|..||+.+.. ... .... ..++++.++.||+|+.
T Consensus 53 ~G~IG~~va~~l~~fg~~v~~~d~~~~~----------------------~~~------~~~~-~~~l~~l~~~~D~v~~ 103 (199)
T d1dxya1 53 TGHIGQVAIKLFKGFGAKVIAYDPYPMK----------------------GDH------PDFD-YVSLEDLFKQSDVIDL 103 (199)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSCCS----------------------SCC------TTCE-ECCHHHHHHHCSEEEE
T ss_pred cccccccccccccccceeeeccCCccch----------------------hhh------cchh-HHHHHHHHHhccccee
Confidence 6899999999999999999999986421 000 0111 2478888999999999
Q ss_pred ccccchHHHHHHHHHHhhhCCCCcEEEeCCCC--cCHHHHhccCC
Q psy17416 202 SVPEILQIKHQVYRAIDIFMSSNTILSSSTSS--FLPSVLSEHST 244 (290)
Q Consensus 202 avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~la~~~~ 244 (290)
++|-+.+-+.-+=++....++++++++..+-+ +.-+.+...+.
T Consensus 104 ~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~ 148 (199)
T d1dxya1 104 HVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 148 (199)
T ss_dssp CCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred eecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHh
Confidence 99988776554446677789999998733322 33345555543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.21 E-value=0.017 Score=44.64 Aligned_cols=89 Identities=13% Similarity=0.185 Sum_probs=58.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.-|.+.+....+.|..|.++|.+++.+++... .+... .. -.......+++.+++||+||-
T Consensus 40 aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~----~~~~~-----~~---------~~~~~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 40 GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET----LFGSR-----VE---------LLYSNSAEIETAVAEADLLIG 101 (168)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HHGGG-----SE---------EEECCHHHHHHHHHTCSEEEE
T ss_pred CChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHH----hhccc-----ce---------eehhhhhhHHHhhccCcEEEE
Confidence 6889999999999999999999999998765443 22100 00 011112356778999999998
Q ss_pred ccccchHHHHHH-HHHHhhhCCCCcEEE
Q psy17416 202 SVPEILQIKHQV-YRAIDIFMSSNTILS 228 (290)
Q Consensus 202 avpe~~~~k~~~-~~~l~~~~~~~~ii~ 228 (290)
++--.-.--..+ -++.-+.++++++|+
T Consensus 102 aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 102 AVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred eeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 875222100011 145666899999998
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=94.07 E-value=0.22 Score=38.39 Aligned_cols=118 Identities=14% Similarity=0.019 Sum_probs=67.2
Q ss_pred cchhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
.|.+|..++..+++++. .+.++|.+...- ..+.+.-.+. +. .......+..+++..++++
T Consensus 33 ~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~--~l~g~~mdl~--------d~---a~~~~~~~~~~~~~~~~~~ 99 (175)
T d7mdha1 33 AGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQ--ALEGVAMELE--------DS---LYPLLREVSIGIDPYEVFE 99 (175)
T ss_dssp TSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHH--HHHHHHHHHH--------TT---TCTTEEEEEEESCHHHHTT
T ss_pred CcHHHHHHHHHHHcCcccCCCceEEEEEecCccccc--hhcchhhhhc--------cc---ccccccCccccccchhhcc
Confidence 48899999998887532 567777655321 1111111110 01 1122345566778788899
Q ss_pred cCcEEEEccc--------------cchHHHHHHHHHHhhhCCCCcEEEeCCCCcC-HHHHhcc--CCC-CCcEEEe
Q psy17416 195 DAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFL-PSVLSEH--STH-RSQFIVA 252 (290)
Q Consensus 195 ~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~~la~~--~~~-~~r~ig~ 252 (290)
++|+||...- .|..+-+++...+.+++++++++..-+-... .+-++.. ... ++||++|
T Consensus 100 ~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~a~~ip~~~i~~m 175 (175)
T d7mdha1 100 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175 (175)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred CCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHCCCCCHHHEeCC
Confidence 9999997652 2344566777789999998885543222222 2222322 233 4677775
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.68 E-value=0.065 Score=40.51 Aligned_cols=116 Identities=10% Similarity=0.037 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHcCc-------eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhccc
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 195 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~ 195 (290)
|..|..++..+++.+. .+.++|.+... .++.. ..-.+ ... .......+..+++..+++++
T Consensus 13 G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~-~~~~~-l~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~ 79 (154)
T d5mdha1 13 GQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMM-GVLDG-VLMEL----QDC-------ALPLLKDVIATDKEEIAFKD 79 (154)
T ss_dssp SHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGH-HHHHH-HHHHH----HHT-------CCTTEEEEEEESCHHHHTTT
T ss_pred CHHHHHHHHHHHHHHhcCCCCccEEEEecCccch-hhhhh-hhhhh----ccc-------ccccccccccCcccccccCC
Confidence 7889999988876542 56788876432 11111 00000 000 01122445556777788999
Q ss_pred CcEEEEccc--------------cchHHHHHHHHHHhhhCCCCcEE-E-eCCCCcCHHHHhcc-C-CC-CCcEEEe
Q psy17416 196 AIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTIL-S-SSTSSFLPSVLSEH-S-TH-RSQFIVA 252 (290)
Q Consensus 196 aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii-~-s~ts~~~~~~la~~-~-~~-~~r~ig~ 252 (290)
+|+||.+-- .+..+-+++..++.++++.++++ . ||- --.++.++.. . .. ++|++||
T Consensus 80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNP-vD~mt~v~~k~s~g~P~~~v~~m 154 (154)
T d5mdha1 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP-ANTNCLTASKSAPSIPKENFSCL 154 (154)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS-HHHHHHHHHHTCTTSCGGGEEEC
T ss_pred ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCc-HHHHHHHHHHHcCCCCHHHEeCC
Confidence 999997653 12345667777888888888743 3 431 1222233333 3 33 4678775
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=93.46 E-value=0.33 Score=35.97 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=52.3
Q ss_pred cchhHHHHHHHHHHcCc--eeEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcE
Q psy17416 122 HGLIGQAWAMIFASAGY--KVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIF 198 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~--~V~l~d~~~e-~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDl 198 (290)
.|..|..+|..+...|+ ++.++|++.. ...++.. .. +... ... ... ..++ +.+++ .+++||+
T Consensus 9 aG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a--~D-l~~~--~~~-~~~-------~~i~-~~~~~-~~~~aDi 73 (142)
T d1o6za1 9 AGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQA--AD-TNHG--IAY-DSN-------TRVR-QGGYE-DTAGSDV 73 (142)
T ss_dssp TSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHH--HH-HHHH--HTT-TCC-------CEEE-ECCGG-GGTTCSE
T ss_pred CCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceee--cc-hhhc--ccc-cCC-------ceEe-eCCHH-HhhhcCE
Confidence 47899999999998876 7999997532 1111111 11 1110 001 110 1222 34565 4799999
Q ss_pred EEEccc------c--------chHHHHHHHHHHhhhCCCCcEEE
Q psy17416 199 IQESVP------E--------ILQIKHQVYRAIDIFMSSNTILS 228 (290)
Q Consensus 199 Vieavp------e--------~~~~k~~~~~~l~~~~~~~~ii~ 228 (290)
|+.+.- + |..+-+++..++.++.+...++.
T Consensus 74 VvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~iv 117 (142)
T d1o6za1 74 VVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLT 117 (142)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEE
T ss_pred EEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 997643 1 34456666677888775554443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.03 E-value=0.016 Score=43.91 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=42.8
Q ss_pred HhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCc-EEeecCCCCChHHHhcccCC-CCceeee
Q psy17416 5 RECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSVLSEHSTH-RSQFIVA 67 (290)
Q Consensus 5 ~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~-i~~snts~~~~~~l~~~~~~-~~r~~g~ 67 (290)
.++++|||+|+-+.- +|.++-+++..+|.+++|... |+.||...+-...+...... |+|++|+
T Consensus 69 ~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~ 147 (148)
T d1ldna1 69 YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGS 147 (148)
T ss_dssp GGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred HHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence 358999999996543 456788889999999975443 34466655433344444444 5899997
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.91 E-value=0.067 Score=40.91 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=36.4
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEee
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 44 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~s 44 (290)
++|++|+++++|+||-|++.+. -.+++.++..++.+++++..
T Consensus 63 ~~~~~e~~~~aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 63 TSDIGLAVKDADVILIVVPAIH--HASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ESCHHHHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEE
T ss_pred hhhhHhHhcCCCEEEEEEchhH--HHHHHHHhhhccCCCCEEEE
Confidence 3688999999999999998775 57899999999999996653
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=92.76 E-value=0.012 Score=44.98 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=66.3
Q ss_pred CcHHhhcccCcEEEEcccCChHHHHHHH--HHHHhhcCCCcEEeecCCCCChH--HHhcccC-CCCceeeeccCC-CCCC
Q psy17416 2 PVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVN-PPYF 75 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e~~~~K~~~~--~~~~~~~~~~~i~~snts~~~~~--~l~~~~~-~~~r~~g~hf~~-P~~~ 75 (290)
++.+|+++++|+||-|+|.+.+++.=++ ..+-....+++++...|+..|-+ +++..+. +.-+++.....- |+..
T Consensus 48 ~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a 127 (161)
T d1vpda2 48 STAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKA 127 (161)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHH
T ss_pred ccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHH
Confidence 5778899999999999999888876655 34677777888776555443332 4554443 223344333321 2111
Q ss_pred --CCeeeEeeCCCCCHHHHHHHHHHHHHhCCccEEE
Q psy17416 76 --IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 109 (290)
Q Consensus 76 --~~lvEiv~~~~t~~~~~~~~~~~~~~lgk~~v~v 109 (290)
-.+.=++.| +++.++.+..+++.++++.+.+
T Consensus 128 ~~g~l~~~~gG---~~~~~~~~~~il~~~~~~i~~~ 160 (161)
T d1vpda2 128 IDGTLSVMVGG---DKAIFDKYYDLMKAMAGSVVHT 160 (161)
T ss_dssp HHTCEEEEEES---CHHHHHHHHHHHHTTEEEEEEE
T ss_pred hcCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEC
Confidence 123323333 6899999999999998865543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.71 E-value=0.25 Score=37.19 Aligned_cols=34 Identities=26% Similarity=0.190 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.|.+|..+++.+...|.+|+.+|++++.++.+++
T Consensus 35 ~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 35 AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred ccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence 6888998888888889999999999999888776
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=92.59 E-value=0.032 Score=42.77 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=41.3
Q ss_pred CCcHHhhcccCcEEEEcccCC----------hHHHHH-----------------------HHHHHHhhcCCCcEEeecCC
Q psy17416 1 TPVLRECLEDAIFIQESVPEI----------LQIKHQ-----------------------VYRAIDIFMSSNTILSSSTS 47 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~----------~~~K~~-----------------------~~~~~~~~~~~~~i~~snts 47 (290)
+++.+++++|||+|+=++--. +..|.. .+.++.+.| |++++- |.|
T Consensus 62 t~~~~~~l~~aDvVVita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~~~-p~a~~i-~vt 139 (162)
T d1up7a1 62 SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-SNATIV-NFT 139 (162)
T ss_dssp CSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEE-ECS
T ss_pred ecCcccccCCCCEEEEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhccC-CCeEEE-EeC
Confidence 568889999999999876411 111111 146777887 687765 555
Q ss_pred CCChHHHhccc---CCCCceeee
Q psy17416 48 SFLPSVLSEHS---THRSQFIVA 67 (290)
Q Consensus 48 ~~~~~~l~~~~---~~~~r~~g~ 67 (290)
| |+..+...+ ..+.|++|+
T Consensus 140 N-Pvdiit~~~~~~~p~~rviGl 161 (162)
T d1up7a1 140 N-PSGHITEFVRNYLEYEKFIGL 161 (162)
T ss_dssp S-SHHHHHHHHHHTTCCSSEEEC
T ss_pred C-HHHHHHHHHHHhCCCCCEEee
Confidence 5 777666544 224799987
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.13 E-value=0.074 Score=41.20 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=36.8
Q ss_pred CCcHHhhcccCcEEEEcccCChHHHHHHHHHHHhhcCCCcEEeec
Q psy17416 1 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 45 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~e~~~~K~~~~~~~~~~~~~~~i~~sn 45 (290)
++|++++++++|+|+.|+| ....+++++++..+..++.++..+
T Consensus 62 ~~~~~~~~~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~t 104 (180)
T d1txga2 62 PEQLEKCLENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLIS 104 (180)
T ss_dssp GGGHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred cccHHHHHhccchhhcccc--hhhhHHHHHhhccccccceecccc
Confidence 4789999999999999998 667789999999999887666543
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.55 E-value=0.49 Score=36.36 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=60.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e-~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
.|.-|++-|+.|...|.+|.+--+... ..++|.+ .|+ . ..+++|+++.+|+|.
T Consensus 24 YGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~-----------~Gf--------------~-v~~~~eA~~~aDiim 77 (182)
T d1np3a2 24 YGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEA-----------HGL--------------K-VADVKTAVAAADVVM 77 (182)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH-----------TTC--------------E-EECHHHHHHTCSEEE
T ss_pred eCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhh-----------hcc--------------c-cccHHHHhhhcCeee
Confidence 578899999999999999887555432 3344333 222 1 357788999999999
Q ss_pred EccccchHHHHHHHH-HHhhhCCCCcEEEe
Q psy17416 201 ESVPEILQIKHQVYR-AIDIFMSSNTILSS 229 (290)
Q Consensus 201 eavpe~~~~k~~~~~-~l~~~~~~~~ii~s 229 (290)
.-+|+.. -.++|+ ++.+.++++..+.-
T Consensus 78 ~L~PD~~--q~~vy~~~I~p~lk~g~~L~F 105 (182)
T d1np3a2 78 ILTPDEF--QGRLYKEEIEPNLKKGATLAF 105 (182)
T ss_dssp ECSCHHH--HHHHHHHHTGGGCCTTCEEEE
T ss_pred eecchHH--HHHHHHHhhhhhcCCCcEEEE
Confidence 9999666 668895 69999999998863
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.52 E-value=0.075 Score=40.86 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=45.0
Q ss_pred CCcHHhhcccCcEEEEccc----------------------------------CChHHHHHHHHHHHhhcCCCcEEeecC
Q psy17416 1 TPVLRECLEDAIFIQESVP----------------------------------EILQIKHQVYRAIDIFMSSNTILSSST 46 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------------------------------e~~~~K~~~~~~~~~~~~~~~i~~snt 46 (290)
++|..++++|||+|+-++. -+..+=+++.+++.++| ||+++-.
T Consensus 68 ~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~-- 144 (169)
T d1s6ya1 68 TLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLIN-- 144 (169)
T ss_dssp ESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE--
T ss_pred cCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEE--
Confidence 4788899999999999884 23444578899999997 6665553
Q ss_pred CCCChHHHhccc---CCCCceeee
Q psy17416 47 SSFLPSVLSEHS---THRSQFIVA 67 (290)
Q Consensus 47 s~~~~~~l~~~~---~~~~r~~g~ 67 (290)
.|-|+..+...+ ..+.|++||
T Consensus 145 vtNPvdv~t~~~~k~~p~~kviGl 168 (169)
T d1s6ya1 145 FTNPAGMVTEAVLRYTKQEKVVGL 168 (169)
T ss_dssp CSSSHHHHHHHHHHHCCCCCEEEC
T ss_pred eCChHHHHHHHHHHHCCCCCEEee
Confidence 233766544433 235799987
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.042 Score=38.29 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=27.2
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||++||++..+.++++.++.+ |. .+++++|.+..
T Consensus 1 GFi~NRil~~~~~ea~~ll~e-G~------a~~~~iD~~~~ 34 (99)
T d1f0ya1 1 GFIVNRLLVPYLMEAIRLYER-GD------ASKEDIDTAMK 34 (99)
T ss_dssp TTTHHHHHHHHHHHHHHHHHT-TS------SCHHHHHHHHH
T ss_pred CeehHHHHHHHHHHHHHHHHH-cC------CCHHHHHHHhh
Confidence 799999999999997666655 42 48999998865
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=90.14 E-value=0.081 Score=40.04 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=40.1
Q ss_pred CcHHhhcccCcEEEEccc-------------------CChHHHHHHHHHHHhhcCCCcEEeecCCCCChHHHh----ccc
Q psy17416 2 PVLRECLEDAIFIQESVP-------------------EILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS----EHS 58 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~-------------------e~~~~K~~~~~~~~~~~~~~~i~~snts~~~~~~l~----~~~ 58 (290)
++.++++++||+|+=+.. +|.++=+++..++.+.++ ++++..- +-|+.-+. ..+
T Consensus 68 ~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p-~aiviiv--sNPvd~lt~~~~~~s 144 (154)
T d1pzga1 68 YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP-KTFIIVV--TNPLDCMVKVMCEAS 144 (154)
T ss_dssp CSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEEC--CSSHHHHHHHHHHHH
T ss_pred CchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCC-CcEEEEe--CCcHHHHHHHHHHHh
Confidence 567889999999997662 123466778888888875 5544431 12454333 333
Q ss_pred C-CCCceeee
Q psy17416 59 T-HRSQFIVA 67 (290)
Q Consensus 59 ~-~~~r~~g~ 67 (290)
+ .|+|++||
T Consensus 145 g~p~~rViG~ 154 (154)
T d1pzga1 145 GVPTNMICGM 154 (154)
T ss_dssp CCCGGGEEEC
T ss_pred CcChhcEecC
Confidence 3 36899986
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.059 Score=42.31 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|+.++..+...|++|+++.++++.+.... .... .-....+.-..++.++++++|.||.
T Consensus 12 tG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~----------------~~~~--~~~~gD~~d~~~l~~al~~~d~vi~ 73 (205)
T d1hdoa_ 12 TGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG----------------PRPA--HVVVGDVLQAADVDKTVAGQDAVIV 73 (205)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS----------------CCCS--EEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHCcCEEEEEEcChhhccccc----------------cccc--ccccccccchhhHHHHhcCCCEEEE
Confidence 478899999999999999999999986532100 0000 0011222223456778999999999
Q ss_pred ccc
Q psy17416 202 SVP 204 (290)
Q Consensus 202 avp 204 (290)
++.
T Consensus 74 ~~g 76 (205)
T d1hdoa_ 74 LLG 76 (205)
T ss_dssp CCC
T ss_pred Eec
Confidence 874
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.11 E-value=0.37 Score=39.23 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++++.++++.+.++.
T Consensus 17 s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~ 54 (259)
T d2ae2a_ 17 SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS 54 (259)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 35689999999999999999999999999888776543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.82 E-value=1.8 Score=34.89 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
+-+|.++|..+++.|++|.+.+++.+.++++.+.+.
T Consensus 24 sGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~ 59 (269)
T d1xu9a_ 24 KGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL 59 (269)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh
Confidence 458999999999999999999999999887766433
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.77 E-value=0.073 Score=38.82 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=26.6
Q ss_pred eeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 115 GFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
||++||+++.+.++...++. .| .+++.+|+++.
T Consensus 1 GFi~NRi~~~~~~ea~~ll~-eG-------~~~~~ID~a~~ 33 (124)
T d1wdka1 1 GFLVNRVLFPYFGGFAKLVS-AG-------VDFVRIDKVME 33 (124)
T ss_dssp TTTHHHHHHHHHHHHHHHHH-TT-------CCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH-cC-------CCHHHHHHHHh
Confidence 89999999999998776654 46 56888998865
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.65 E-value=0.42 Score=38.73 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=32.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+.+++
T Consensus 11 s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~ 48 (257)
T d2rhca1 11 TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE 48 (257)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 35689999999999999999999999998887776543
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=88.50 E-value=0.63 Score=37.02 Aligned_cols=143 Identities=15% Similarity=0.049 Sum_probs=82.2
Q ss_pred cchhHHHHHHHHHHcCc------eeEEec-CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGY------KVSLYD-VLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~------~V~l~d-~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
.|.-|.+-|+.|...|+ .|.+-= ......++|.+ .|+... +. ...+.+|+++
T Consensus 52 YGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~-----------dGf~v~---------~~-~v~~v~EAv~ 110 (226)
T d1qmga2 52 WGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARA-----------AGFSEE---------NG-TLGDMWETIS 110 (226)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHH-----------TTCCGG---------GT-CEEEHHHHHH
T ss_pred eccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHH-----------cCCccC---------CC-cccCHHHHHh
Confidence 57888998999988554 454322 22233445544 333211 00 1246678899
Q ss_pred cCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeCCCCcCHHHHh---ccCCCCCcEEEeccCCCCC------------
Q psy17416 195 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS---EHSTHRSQFIVAHPVNPPY------------ 259 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~la---~~~~~~~r~ig~Hf~~p~~------------ 259 (290)
.+|+|+..+|+.. -.++|+++.+.+++++.+.-+. ++.+.-.. ...+.--.++-.-|-.|-+
T Consensus 111 ~ADiVmiLlPDe~--Q~~vy~~I~p~Lk~G~~L~FaH-GFnI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~ 187 (226)
T d1qmga2 111 GSDLVLLLISDSA--QADNYEKVFSHMKPNSILGLSH-GFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEV 187 (226)
T ss_dssp TCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEESS-SHHHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTT
T ss_pred hCCEEEEecchHH--HHHHHHHHHHhcCCCceeeecc-hhhhhhceeeecccCCCceEEEECCCCCCchHHHHHHccccc
Confidence 9999999999777 5689999999999999886443 33332111 1112223444333322211
Q ss_pred ---CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy17416 260 ---FIPLVEIVPAAWTSERVITRTREIMTEIGM 289 (290)
Q Consensus 260 ---~~~lvEvv~~~~t~~e~~~~~~~~~~~lgk 289 (290)
-.|.+ +--....+-.+.+.+.+++..+|-
T Consensus 188 ~G~GVP~L-iAV~QD~sG~A~~~alayA~aIG~ 219 (226)
T d1qmga2 188 NGAGINSS-FAVHQDVDGRATDVALGWSIALGS 219 (226)
T ss_dssp TCCCCCEE-EEEEECSSSCHHHHHHHHHHHHTC
T ss_pred CCCCceeE-EEEEECCCCcHHHHHHHHHHhCCC
Confidence 11211 222234455678888888888773
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.44 Score=38.44 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+-+|+++|..+++.|++|.+.|++++.+++..+.+.
T Consensus 16 s~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~ 52 (244)
T d1yb1a_ 16 GHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK 52 (244)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 4568999999999999999999999999988777654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.46 E-value=2.4 Score=34.41 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=32.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++.+.+++..+.+..
T Consensus 34 s~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~ 71 (294)
T d1w6ua_ 34 GTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS 71 (294)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence 46789999999999999999999999998877765543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=0.59 Score=35.32 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+|-.+++++..+...|.++.+++|+++..++..+
T Consensus 26 aGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~ 59 (170)
T d1nyta1 26 AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK 59 (170)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred CcHHHHHHHHHhcccceEEEeccchHHHHHHHHH
Confidence 5666788888888999999999999987765444
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=88.29 E-value=0.86 Score=33.86 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHcCc-------eeEEec--CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhc
Q psy17416 123 GLIGQAWAMIFASAGY-------KVSLYD--VLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 193 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~-------~V~l~d--~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l 193 (290)
|..|..++..++..++ ...+++ .+.+.++......+. ........+..+++..+++
T Consensus 14 G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 78 (154)
T d1y7ta1 14 GQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED---------------CAFPLLAGLEATDDPKVAF 78 (154)
T ss_dssp SHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT---------------TTCTTEEEEEEESCHHHHT
T ss_pred CHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhc---------------cccccccccccCCchhhhc
Confidence 7889999998887553 223343 333333221111000 0111234555567777789
Q ss_pred ccCcEEEEccc-------c-------chHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 194 EDAIFIQESVP-------E-------ILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 194 ~~aDlVieavp-------e-------~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+++|+||.+-- + |..+-+++..++.+++++++++..
T Consensus 79 ~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~viv 128 (154)
T d1y7ta1 79 KDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLV 128 (154)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 99999997752 1 344556666788888888886653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=88.15 E-value=2.1 Score=35.50 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=42.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
.|.+|..++..|.+.|++|....++........+ .++.... +... ......+.-..++.+++.++|.|+.
T Consensus 20 sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~----~~~~~~~-~~~~-----~~~~~Dl~~~~~~~~~~~~~~~v~~ 89 (342)
T d1y1pa1 20 NGFVASHVVEQLLEHGYKVRGTARSASKLANLQK----RWDAKYP-GRFE-----TAVVEDMLKQGAYDEVIKGAAGVAH 89 (342)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HHHHHST-TTEE-----EEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred CCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHH----hhhcccc-cccc-----EEEeccccchhhhhhhcccchhhhh
Confidence 5778999999999999999998888876544332 2221100 0000 0001112222455567889999885
Q ss_pred ccc
Q psy17416 202 SVP 204 (290)
Q Consensus 202 avp 204 (290)
+.-
T Consensus 90 ~a~ 92 (342)
T d1y1pa1 90 IAS 92 (342)
T ss_dssp CCC
T ss_pred hcc
Confidence 443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.04 E-value=0.1 Score=39.27 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=42.7
Q ss_pred CcHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCc--EEeecCCCCChHHHh----ccc-C-
Q psy17416 2 PVLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNT--ILSSSTSSFLPSVLS----EHS-T- 59 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~--i~~snts~~~~~~l~----~~~-~- 59 (290)
++.+++++++|+|+=+.. .|.++=+++-..+.+.++.++ |++|| |+.-++ ... +
T Consensus 71 ~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN----PvD~mt~v~~k~s~g~ 146 (154)
T d5mdha1 71 DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN----PANTNCLTASKSAPSI 146 (154)
T ss_dssp SCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS----SHHHHHHHHHHTCTTS
T ss_pred cccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC----cHHHHHHHHHHHcCCC
Confidence 567889999999996542 224666778888999999997 34677 454332 223 3
Q ss_pred CCCceeee
Q psy17416 60 HRSQFIVA 67 (290)
Q Consensus 60 ~~~r~~g~ 67 (290)
.++||+||
T Consensus 147 P~~~v~~m 154 (154)
T d5mdha1 147 PKENFSCL 154 (154)
T ss_dssp CGGGEEEC
T ss_pred CHHHEeCC
Confidence 36888886
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=87.74 E-value=0.51 Score=38.31 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+-+|+++|..+++.|++|.+.+++++.++++.+.++
T Consensus 15 s~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~ 51 (258)
T d1ae1a_ 15 SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR 51 (258)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 4678999999999999999999999999888776544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=87.65 E-value=0.49 Score=38.41 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=32.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+-+|+++|..|++.|+.|.+.|++++.++++.+.++
T Consensus 14 s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~ 50 (260)
T d1zema1 14 GGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR 50 (260)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 3568999999999999999999999999888776554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.17 E-value=0.67 Score=37.42 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++.+.+++..+.+.+
T Consensus 14 s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~ 51 (251)
T d1vl8a_ 14 SRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE 51 (251)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Confidence 35689999999999999999999999998877765544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=87.05 E-value=0.11 Score=40.39 Aligned_cols=104 Identities=11% Similarity=-0.006 Sum_probs=56.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHH-------HHHHHcCCCCCCCChhhhhcccccCCchHhhcc
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTL-------QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 194 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~-------~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~ 194 (290)
.|..|.+.+......|..|.++|.+++.+++..+...+.+ ......+-....++. +.. ......+.+.++
T Consensus 37 aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~-~~~--~~~~~~l~~~l~ 113 (183)
T d1l7da1 37 VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGE-EFR--KKQAEAVLKELV 113 (183)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC--------------------------CCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCH-HHH--HHHHHHHHHHHH
Confidence 5888999999999999999999999988776554210000 000000000000000 000 000123556688
Q ss_pred cCcEEEEccccchHHHH-HHHHHHhhhCCCCcEEE
Q psy17416 195 DAIFIQESVPEILQIKH-QVYRAIDIFMSSNTILS 228 (290)
Q Consensus 195 ~aDlVieavpe~~~~k~-~~~~~l~~~~~~~~ii~ 228 (290)
+||+||-++--.-.--. -+-+++-+.++++++|+
T Consensus 114 ~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 114 KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred hhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 99999977542211000 11245666899999997
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.04 E-value=0.43 Score=38.74 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++++.++++.+.+++
T Consensus 20 s~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~ 57 (255)
T d1fmca_ 20 GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ 57 (255)
T ss_dssp TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Confidence 35689999999999999999999999998887776553
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.79 E-value=0.63 Score=37.68 Aligned_cols=38 Identities=26% Similarity=0.208 Sum_probs=33.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|.++|..|++.|++|.+.+++++.++++.+.+++
T Consensus 19 s~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~ 56 (257)
T d1xg5a_ 19 SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKS 56 (257)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 45689999999999999999999999998888776654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=86.60 E-value=0.12 Score=38.32 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=40.5
Q ss_pred cHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHHhcc----cCC-C
Q psy17416 3 VLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEH----STH-R 61 (290)
Q Consensus 3 ~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l~~~----~~~-~ 61 (290)
+..++++|||+|+=++- .|.++-+++.+.|.+.+ |++++ .|| |+..++.. ... |
T Consensus 62 ~~~~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtN----Pvd~~~~~~~~~sg~p~ 136 (142)
T d1guza1 62 NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN----PLDIMTHVAWVRSGLPK 136 (142)
T ss_dssp SCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS----SHHHHHHHHHHHHCSCG
T ss_pred CCHHHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecC----ChHHHHHHHHHHhCCCh
Confidence 33568999999998852 23456678888999987 56655 455 55544432 233 5
Q ss_pred Cceeee
Q psy17416 62 SQFIVA 67 (290)
Q Consensus 62 ~r~~g~ 67 (290)
+|++||
T Consensus 137 ~rviG~ 142 (142)
T d1guza1 137 ERVIGM 142 (142)
T ss_dssp GGEEEE
T ss_pred HhEeeC
Confidence 899997
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.56 E-value=0.5 Score=38.72 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=32.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++++.++++.+.+++
T Consensus 13 s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~ 50 (274)
T d1xhla_ 13 SNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILK 50 (274)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Confidence 35689999999999999999999999998887776554
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.54 E-value=3.5 Score=32.76 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=29.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+
T Consensus 15 s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 48 (244)
T d1nffa_ 15 ARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA 48 (244)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999988766554
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.21 E-value=0.54 Score=38.20 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=33.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++.+.++++.+.++.
T Consensus 14 s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~ 51 (264)
T d1spxa_ 14 SNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILA 51 (264)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 35689999999999999999999999998887776654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.04 E-value=0.77 Score=37.16 Aligned_cols=38 Identities=37% Similarity=0.434 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+.+..
T Consensus 13 s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~ 50 (258)
T d1iy8a_ 13 GSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLE 50 (258)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 35689999999999999999999999998877665543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=85.91 E-value=0.27 Score=36.64 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=42.5
Q ss_pred CcHHhhcccCcEEEEcccC--------------ChHHHHHHHHHHHhhcCCCc-EEeecCCCCChHHHhcccCC-CCcee
Q psy17416 2 PVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNT-ILSSSTSSFLPSVLSEHSTH-RSQFI 65 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~~e--------------~~~~K~~~~~~~~~~~~~~~-i~~snts~~~~~~l~~~~~~-~~r~~ 65 (290)
.|.+ ++++||+|+=++.- |..+-+++-.+|.+.++... |++||...+....+...... |+|++
T Consensus 65 ~d~~-~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rVi 143 (146)
T d1ez4a1 65 GEYS-DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVI 143 (146)
T ss_dssp CCGG-GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEE
T ss_pred ccHH-HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCcccee
Confidence 3554 68999999987532 24466788888998875554 34566555444444444554 58899
Q ss_pred ee
Q psy17416 66 VA 67 (290)
Q Consensus 66 g~ 67 (290)
|+
T Consensus 144 G~ 145 (146)
T d1ez4a1 144 GS 145 (146)
T ss_dssp EC
T ss_pred cC
Confidence 86
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.86 E-value=0.58 Score=38.00 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.+++++.++++.+.+..
T Consensus 17 s~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~ 54 (259)
T d1xq1a_ 17 TKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK 54 (259)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 35689999999999999999999999998887775543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=85.66 E-value=0.43 Score=36.57 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEE
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQ 200 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVi 200 (290)
+|-.+++++..+...|. .+.+++++++..+++....++.-... ... .....+.-..++.+.+.++|+||
T Consensus 26 aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~diiI 95 (182)
T d1vi2a1 26 AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT---DCV-------VTVTDLADQQAFAEALASADILT 95 (182)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS---SCE-------EEEEETTCHHHHHHHHHTCSEEE
T ss_pred CcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc---Ccc-------eEeeecccccchhhhhcccceec
Confidence 57778888888888886 79999999988887665433321110 000 00001111123445678899999
Q ss_pred Eccccc
Q psy17416 201 ESVPEI 206 (290)
Q Consensus 201 eavpe~ 206 (290)
-|+|-.
T Consensus 96 N~Tp~G 101 (182)
T d1vi2a1 96 NGTKVG 101 (182)
T ss_dssp ECSSTT
T ss_pred cccCCc
Confidence 999843
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.44 E-value=4.1 Score=35.16 Aligned_cols=129 Identities=6% Similarity=-0.072 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy17416 93 TRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK 171 (290)
Q Consensus 93 ~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~ 171 (290)
..+.+++++++.+|--+-=| +..-.|.-...+....|. .|+.+|.++..++.|.++.+..-......|...
T Consensus 203 ~~i~~Il~~l~Lkpgd~fLD--------LGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~ 274 (406)
T d1u2za_ 203 NFLSDVYQQCQLKKGDTFMD--------LGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL 274 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEE--------ESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred HHHHHHHHHhCCCCCCEEEe--------CCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 34566777776444211013 122234443344445554 799999999999999887665443332222222
Q ss_pred CCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEeC
Q psy17416 172 GSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 230 (290)
Q Consensus 172 ~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 230 (290)
+... ....+...-.....+.+.+||+|+..-.--..-....++++.+.+++|+.|++.
T Consensus 275 ~~~~-~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 275 NNVE-FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp CCEE-EEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccce-eeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 2100 000011111122345577899988542222233456778888999999987764
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=84.86 E-value=0.28 Score=37.76 Aligned_cols=63 Identities=14% Similarity=-0.024 Sum_probs=43.7
Q ss_pred CCcHHhhcccCcEEEEccc--------------CChHHHHHHHHHHHhhcCCCcEE--eecCCCCChHHH---h-ccc-C
Q psy17416 1 TPVLRECLEDAIFIQESVP--------------EILQIKHQVYRAIDIFMSSNTIL--SSSTSSFLPSVL---S-EHS-T 59 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~--------------e~~~~K~~~~~~~~~~~~~~~i~--~snts~~~~~~l---~-~~~-~ 59 (290)
+++..++++++|+||=... .|..+=+++-..|.+++++++++ +|| |+.-+ + ... +
T Consensus 91 ~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N----Pvd~~t~ia~k~a~~ 166 (175)
T d7mdha1 91 GIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN----PCNTNALICLKNAPD 166 (175)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS----SHHHHHHHHHHTCTT
T ss_pred cccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC----cHHHHHHHHHHHCCC
Confidence 4678899999999996641 34566778888999999999844 455 44422 2 222 2
Q ss_pred -CCCceeee
Q psy17416 60 -HRSQFIVA 67 (290)
Q Consensus 60 -~~~r~~g~ 67 (290)
.|+||+||
T Consensus 167 ip~~~i~~m 175 (175)
T d7mdha1 167 IPAKNFHAL 175 (175)
T ss_dssp SCGGGEEEC
T ss_pred CCHHHEeCC
Confidence 36888886
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.83 E-value=0.62 Score=37.61 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=32.0
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+-+|+++|..|++.|++|.+.|++++.++++.+.++
T Consensus 19 s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~ 55 (251)
T d2c07a1 19 GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK 55 (251)
T ss_dssp TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence 3568999999999999999999999999888776554
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.75 E-value=0.77 Score=36.81 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=30.1
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+
T Consensus 16 s~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 16 GKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999998877665
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.66 E-value=0.82 Score=36.82 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 158 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~ 158 (290)
.+-+|+++|..|++.|++|.+.|++.+.++++.+.+.
T Consensus 12 s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~ 48 (254)
T d2gdza1 12 AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH 48 (254)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 3568999999999999999999999998887766443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=84.52 E-value=3.1 Score=33.23 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
+-+|+++|..|++.|++|.+.|++++.+++..+
T Consensus 16 ~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 16 SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999988776554
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.49 E-value=0.91 Score=37.59 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++++.++++.+.++.
T Consensus 21 s~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~ 58 (297)
T d1yxma1 21 ATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQA 58 (297)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 35689999999999999999999999998887776654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=84.41 E-value=6.3 Score=29.25 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHcCc-eeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~-~V~l~d~~~e~l~~a~~ 155 (290)
+|.+|..+.+.+...|. +|+..|++++.++.+.+
T Consensus 37 aG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 37 AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred CCccchhheeccccccccccccccccccccccccc
Confidence 68888888888888897 79999999999887765
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=83.73 E-value=0.37 Score=36.83 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=42.1
Q ss_pred CCcHHhhcccCcEEEEccc----------------------------------------CChHHHHHHHHHHHhhcCCCc
Q psy17416 1 TPVLRECLEDAIFIQESVP----------------------------------------EILQIKHQVYRAIDIFMSSNT 40 (290)
Q Consensus 1 ~~~l~~~~~~~d~viea~~----------------------------------------e~~~~K~~~~~~~~~~~~~~~ 40 (290)
++|++|+++|||+|+-++. -+..+=+++.+++.+.| ||+
T Consensus 67 ~td~~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~-p~a 145 (171)
T d1obba1 67 TMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKA 145 (171)
T ss_dssp ESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTC
T ss_pred eCChhhcccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHC-cCe
Confidence 4789999999999996642 15566788999999998 566
Q ss_pred EEeecCCCCChHHHhcccC--CCCceee
Q psy17416 41 ILSSSTSSFLPSVLSEHST--HRSQFIV 66 (290)
Q Consensus 41 i~~snts~~~~~~l~~~~~--~~~r~~g 66 (290)
++- |-|| |+..+...+. .|-|++|
T Consensus 146 ~~i-~~TN-Pvdv~t~~~~k~~~~k~iG 171 (171)
T d1obba1 146 WYL-QAAN-PIFEGTTLVTRTVPIKAVG 171 (171)
T ss_dssp EEE-ECSS-CHHHHHHHHHHHSCSEEEE
T ss_pred EEE-EECC-hHHHHHHHHHHhcCCCccC
Confidence 543 2223 6665554442 2346655
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=83.71 E-value=0.79 Score=36.75 Aligned_cols=35 Identities=23% Similarity=0.122 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+.
T Consensus 13 s~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~ 47 (243)
T d1q7ba_ 13 SRGIGRAIAETLAARGAKVIGTATSENGAQAISDY 47 (243)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 35689999999999999999999999988776653
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.64 E-value=0.72 Score=37.19 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+.+++
T Consensus 10 s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~ 47 (255)
T d1gega_ 10 GQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ 47 (255)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 35689999999999999999999999998877765543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=83.47 E-value=0.97 Score=36.63 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 157 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i 157 (290)
+-+|+++|..|++.|++|.+.|++++.++++.+.+
T Consensus 16 ~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l 50 (268)
T d2bgka1 16 GGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI 50 (268)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence 46899999999999999999999999888776643
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=83.12 E-value=0.94 Score=34.36 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHc
Q psy17416 88 SERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK 167 (290)
Q Consensus 88 ~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~ 167 (290)
-|.|-..+.+++++.+- .+ ..-...+++| ....|+-++.++.+.|..|+..+..
T Consensus 17 ~PcTp~aI~~lL~~y~i---~l-~GK~v~VIGr-S~~VG~Pla~lL~~~gatVt~~h~~--------------------- 70 (166)
T d1b0aa1 17 RPCTPRGIVTLLERYNI---DT-FGLNAVVIGA-SNIVGRPMSMELLLAGCTTTVTHRF--------------------- 70 (166)
T ss_dssp CCHHHHHHHHHHHHTTC---CC-TTCEEEEECC-CTTTHHHHHHHHHTTTCEEEEECSS---------------------
T ss_pred CCchHHHHHHHHHHcCc---cc-ccceEEEEec-cccccHHHHHHHHHhhccccccccc---------------------
Confidence 36677777888887664 12 2334456667 6788999999999999999877632
Q ss_pred CCCCCCCChhhhhcccccCCchHhhcccCcEEEEccccchHHHHHHHHHHhhhCCCCcEEEe
Q psy17416 168 GCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 229 (290)
Q Consensus 168 g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 229 (290)
+.++.+.++++|+||-|+.-.- +++ .+.++++++++.
T Consensus 71 ------------------t~~l~~~~~~ADivI~a~G~p~-----~i~--~~~vk~g~vvID 107 (166)
T d1b0aa1 71 ------------------TKNLRHHVENADLLIVAVGKPG-----FIP--GDWIKEGAIVID 107 (166)
T ss_dssp ------------------CSCHHHHHHHCSEEEECSCCTT-----CBC--TTTSCTTCEEEE
T ss_pred ------------------cchhHHHHhhhhHhhhhccCcc-----ccc--ccccCCCcEEEe
Confidence 2344455788999999887333 222 345778888874
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.98 E-value=4.7 Score=29.83 Aligned_cols=58 Identities=14% Similarity=0.027 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHcCceeEEecC-----CHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEE
Q psy17416 125 IGQAWAMIFASAGYKVSLYDV-----LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 199 (290)
Q Consensus 125 ~g~~ia~~~~~~G~~V~l~d~-----~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlV 199 (290)
+.++++..+...|.++.+... +++.++.+.+.... ....+..+.|+.+++.++|+|
T Consensus 16 v~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~d~~ea~~~advi 76 (163)
T d1pvva2 16 VAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAE-------------------SGGSFELLHDPVKAVKDADVI 76 (163)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHH-------------------HTCEEEEESCHHHHTTTCSEE
T ss_pred HHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhc-------------------ccceEEEecCHHHHhhhccEE
Confidence 456778888888999988753 44444443332111 113556788999999999999
Q ss_pred EE
Q psy17416 200 QE 201 (290)
Q Consensus 200 ie 201 (290)
.-
T Consensus 77 y~ 78 (163)
T d1pvva2 77 YT 78 (163)
T ss_dssp EE
T ss_pred ee
Confidence 84
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=82.83 E-value=0.21 Score=37.14 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=42.1
Q ss_pred CcHHhhcccCcEEEEcc--------------cCChHHHHHHHHHHHhhcCCCcE-EeecCCCCChHHHhcccC-CCCcee
Q psy17416 2 PVLRECLEDAIFIQESV--------------PEILQIKHQVYRAIDIFMSSNTI-LSSSTSSFLPSVLSEHST-HRSQFI 65 (290)
Q Consensus 2 ~~l~~~~~~~d~viea~--------------~e~~~~K~~~~~~~~~~~~~~~i-~~snts~~~~~~l~~~~~-~~~r~~ 65 (290)
+|.+ ++++||+|+=+. .+|.++-+++..+|.+.++...+ +.||--..-...+..... .|+|++
T Consensus 62 ~~~~-~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p~~rVi 140 (143)
T d1llda1 62 DDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIF 140 (143)
T ss_dssp SCGG-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEE
T ss_pred CCHH-HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCChhhcc
Confidence 3444 799999998654 23677888999999999755543 356644432223333333 358999
Q ss_pred ee
Q psy17416 66 VA 67 (290)
Q Consensus 66 g~ 67 (290)
|+
T Consensus 141 G~ 142 (143)
T d1llda1 141 GS 142 (143)
T ss_dssp EC
T ss_pred CC
Confidence 87
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.51 E-value=0.7 Score=37.69 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=32.8
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 159 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~ 159 (290)
.+-+|+++|..|++.|++|.+.|++++.++++.+.+++
T Consensus 14 s~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~ 51 (272)
T d1xkqa_ 14 SNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILK 51 (272)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 35689999999999999999999999998887776543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.15 E-value=0.92 Score=36.57 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=30.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
.+-+|+++|..|++.|++|.+.|++.+.+++..+.
T Consensus 14 s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (256)
T d1k2wa_ 14 ARGIGRAFAEAYVREGARVAIADINLEAARATAAE 48 (256)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 35689999999999999999999999988776653
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.11 E-value=0.88 Score=36.62 Aligned_cols=34 Identities=32% Similarity=0.219 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 123 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 123 G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
+-+|+++|..|++.|++|.+.|++++.++++.+.
T Consensus 16 ~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~ 49 (251)
T d1zk4a1 16 LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS 49 (251)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999988776654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=81.78 E-value=3.4 Score=31.98 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHhCCccEEEeccceeeEEecccchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 88 SERVITRTREIMTEIGMKPVTLTTEIRGFALNRIHGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 88 ~~~~~~~~~~~~~~lgk~~v~v~~d~~gf~~nri~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.--++..+...+++.|...+ +... +++ .-+|..|..+|..+.+.|..|+.+|.+++.+.++..
T Consensus 6 a~Gv~~~~~~~~~~~g~~~L---~gk~-v~I-qG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~ 68 (201)
T d1c1da1 6 AVGVFEAMKATVAHRGLGSL---DGLT-VLV-QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA 68 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCCS---TTCE-EEE-ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCC---CCCE-EEE-ECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHh
Confidence 34456666777777775332 1111 222 347999999999999999999999999988765543
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=81.78 E-value=0.69 Score=35.06 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=41.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhhcccCcEEEE
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE 201 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~l~~aDlVie 201 (290)
+|-.+++++..+...+.++.+++|+++..+...+.+.. .+ .+......+..+.++|++|-
T Consensus 26 aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~-------~~-------------~~~~~~~~~~~~~~~diiIN 85 (171)
T d1p77a1 26 AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP-------YG-------------NIQAVSMDSIPLQTYDLVIN 85 (171)
T ss_dssp CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-------GS-------------CEEEEEGGGCCCSCCSEEEE
T ss_pred CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhh-------cc-------------ccchhhhccccccccceeee
Confidence 56777888888888888999999999776654442221 00 11111111223678999999
Q ss_pred ccccch
Q psy17416 202 SVPEIL 207 (290)
Q Consensus 202 avpe~~ 207 (290)
|+|-..
T Consensus 86 ~tp~g~ 91 (171)
T d1p77a1 86 ATSAGL 91 (171)
T ss_dssp CCCC--
T ss_pred cccccc
Confidence 999554
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.77 E-value=3.3 Score=31.02 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=48.6
Q ss_pred eeEEecccchhHHHHHHHHHHc-CceeE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhhhcccccCCchHhh
Q psy17416 115 GFALNRIHGLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC 192 (290)
Q Consensus 115 gf~~nri~G~~g~~ia~~~~~~-G~~V~-l~d~~~e~l~~a~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~l~~~ 192 (290)
|+++ .|.+|+..+..+... +++++ ++|++++......+ +.+.. ....+.+|+++.
T Consensus 5 ~iIG---~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~----------~~~~~----------~~~~~~~~~~~l 61 (184)
T d1ydwa1 5 GVMG---CADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNYP----------ESTKIHGSYESL 61 (184)
T ss_dssp EEES---CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTCC----------TTCEEESSHHHH
T ss_pred EEEc---CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchh----------ccccc----------cceeecCcHHHh
Confidence 4554 577888877666554 66765 67999987654433 11211 112345777776
Q ss_pred c--ccCcEEEEccccchHHHHHHHHHH
Q psy17416 193 L--EDAIFIQESVPEILQIKHQVYRAI 217 (290)
Q Consensus 193 l--~~aDlVieavpe~~~~k~~~~~~l 217 (290)
+ .+.|+|+.|+|..... ++....
T Consensus 62 l~~~~iD~v~I~tp~~~h~--~~~~~~ 86 (184)
T d1ydwa1 62 LEDPEIDALYVPLPTSLHV--EWAIKA 86 (184)
T ss_dssp HHCTTCCEEEECCCGGGHH--HHHHHH
T ss_pred hhccccceeeecccchhhc--chhhhh
Confidence 5 4689999999977743 554443
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=81.60 E-value=1.3 Score=36.15 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+
T Consensus 14 s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 14 ASGLGRALVDRFVAEGAKVAVLDKSAERLAELET 47 (276)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999998876554
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.17 E-value=1.3 Score=35.64 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+
T Consensus 15 s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 48 (250)
T d1ydea1 15 GRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ 48 (250)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999988876654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.12 E-value=1.3 Score=35.33 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=29.5
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+
T Consensus 14 s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 14 GKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999988776654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.97 E-value=0.7 Score=36.87 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 156 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~~ 156 (290)
.+-+|.++|..|++.|++|.+.|++.+.+++..+.
T Consensus 14 s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 14 ASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 45689999999999999999999998887766553
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=80.88 E-value=6.9 Score=31.07 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=29.3
Q ss_pred cchhHHHHHHHHHHcCceeEEecCCHHHHHHHHH
Q psy17416 122 HGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 155 (290)
Q Consensus 122 ~G~~g~~ia~~~~~~G~~V~l~d~~~e~l~~a~~ 155 (290)
.+-+|+++|..|++.|++|.+.|++++.+++..+
T Consensus 14 s~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 14 ARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999988766554
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=80.33 E-value=2.3 Score=28.42 Aligned_cols=29 Identities=24% Similarity=0.062 Sum_probs=24.3
Q ss_pred cccchhHHHHHHHHHHcCceeEEecCCHH
Q psy17416 120 RIHGLIGQAWAMIFASAGYKVSLYDVLSE 148 (290)
Q Consensus 120 ri~G~~g~~ia~~~~~~G~~V~l~d~~~e 148 (290)
.+.|.-..++|..+...|+.|...|+.+.
T Consensus 8 GIgG~GMs~LA~~L~~~G~~VsGSD~~~~ 36 (89)
T d1j6ua1 8 GIGGIGMSAVALHEFSNGNDVYGSNIEET 36 (89)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred eECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35677777889999999999999998864
|