Psyllid ID: psy17455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MTEGSQEFCLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQMDN
Secondary Structure (PSIPRED)
cccccccEEEcccccHHHHHHHHHHccccEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHcccccccEEEcccccHHHHHHHHccHHccEEEEccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccHHHHHHHHHHHcccccEEEEccccccHHHHHHEEccccHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccEccHHHHHHHHHHHHHHHEcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTEGSQEFCLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCtcspvfeiPLFEMLLsqhnderpiliFSETKFNELKSMIDYMykgevniapDELNHFLKAAERLQIrglsesesttqtavhypdddeedysqagtsqmdn
Flexible Loop (DISEMBL)
MTEGSQEFCLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIrglsesesttqtavhypdddeedysqagtsqmdn
Low Complexity Region (SEG)
MTEGSQEFCLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQMDN
Disordered region (IsUnstruct)
*******FCLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQ***********************************
Disordered Region (DISOPRED)
****SQE*CLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRG********************************
Disordered Region (DISEMBL)
MTEGSQEFCLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS*********VHYPD****************
Disordered Region (DISPRO)
****SQEFCLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL*******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEGSQEFCLRANQETMISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQMDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.791	0.149	0.515	1e-29
P42284	549	Longitudinals lacking pro	no	N/A	0.791	0.214	0.515	1e-29
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.791	0.122	0.515	2e-29
P42283	891	Longitudinals lacking pro	no	N/A	0.791	0.132	0.515	3e-29
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.758	0.116	0.528	3e-29
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.791	0.134	0.515	3e-29
P42282	813	Protein tramtrack, alpha	no	N/A	0.771	0.141	0.430	8e-23
P17789	643	Protein tramtrack, beta i	no	N/A	0.771	0.178	0.430	1e-22
Q9W0K4	1067	Protein bric-a-brac 2 OS=	no	N/A	0.744	0.104	0.436	1e-21
Q8IN81	955	Sex determination protein	no	N/A	0.744	0.116	0.428	4e-21

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 8/126 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T+IS+ ++LL+ ETLVD   +AEG++LKAHKVVL  CSP F       
Sbjct: 5   QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFAT----- 59

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LL +  D+ PI I  + K+ EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS++ 
Sbjct: 60  LLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNR 119

Query: 123 STTQTA 128
           +    A
Sbjct: 120 TGGGVA 125

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 8/126 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T+IS+ ++LL+ ETLVD   +AEG++LKAHKVVL  CSP      F  
Sbjct: 5   QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSP-----YFAT 59

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LL +  D+ PI I  + K+ EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS++ 
Sbjct: 60  LLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNR 119

Query: 123 STTQTA 128
           +    A
Sbjct: 120 TGGGVA 125

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 8/126 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T+IS+ ++LL+ ETLVD   +AEG++LKAHKVVL  CSP      F  
Sbjct: 5   QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSP-----YFAT 59

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LL +  D+ PI I  + K+ EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS++ 
Sbjct: 60  LLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNR 119

Query: 123 STTQTA 128
           +    A
Sbjct: 120 TGGGVA 125

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 8/126 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T+IS+ ++LL+ ETLVD   +AEG++LKAHKVVL  CSP F       
Sbjct: 5   QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFAT----- 59

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LL +  D+ PI I  + K+ EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS++ 
Sbjct: 60  LLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNR 119

Query: 123 STTQTA 128
           +    A
Sbjct: 120 TGGGVA 125

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 87/121 (71%), Gaps = 8/121 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T+IS+ ++LL+ ETLVD   +AEG++LKAHKVVL  CSP      F  
Sbjct: 5   QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSP-----YFAT 59

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LL +  D+ PI I  + K+ EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS++ 
Sbjct: 60  LLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNR 119

Query: 123 S 123
           +
Sbjct: 120 T 120

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 8/126 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T+IS+ ++LL+ ETLVD   +AEG++LKAHKVVL  CSP      F  
Sbjct: 5   QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSP-----YFAT 59

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LL +  D+ PI I  + K+ EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS++ 
Sbjct: 60  LLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNR 119

Query: 123 STTQTA 128
           +    A
Sbjct: 120 TGGGVA 125

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 8/123 (6%)

Query: 1   MTEGSQEFCLRAN--QETMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEI 57
           M   SQ FCLR N  Q  ++S+ + LL  ET  D+  A EGQ+LKAHK+VL  CSP F  
Sbjct: 1   MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNT 60

Query: 58  PLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRG 117
                L   H ++ PI+I  +  ++++KS++D+MY+GEV++  + L  FL+ AE L+I+G
Sbjct: 61  -----LFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKG 115

Query: 118 LSE 120
           L+E
Sbjct: 116 LTE 118

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 8/123 (6%)

Query: 1   MTEGSQEFCLRAN--QETMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEI 57
           M   SQ FCLR N  Q  ++S+ + LL  ET  D+  A EGQ+LKAHK+VL  CSP F  
Sbjct: 1   MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNT 60

Query: 58  PLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRG 117
                L   H ++ PI+I  +  ++++KS++D+MY+GEV++  + L  FL+ AE L+I+G
Sbjct: 61  -----LFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKG 115

Query: 118 LSE 120
           L+E
Sbjct: 116 LTE 118

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform beta is required to repress inappropriate segmentation gene transcription and repress genes incompatible with development of photoreceptor cell fates. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. Inhibits Trl-dependent activation of eve. May bind to the region AGGGC/TGG. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk. A second method of degradation exists that is phyl-independent, this is mediated by recognition of motifs in the C-terminus of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 79/119 (66%), Gaps = 8/119 (6%)

Query: 5   SQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFE 61
            Q+FCLR N  Q  + ++ + LL+ E+ VD+  S EG  +KAHK+VL  CSP F+  LF 
Sbjct: 195 GQQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYFQA-LFY 253

Query: 62  MLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
               QH    PI+I  +  +++LK+++++MYKGE+N+  D++N  LK AE L+IRGL+E
Sbjct: 254 DNPCQH----PIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAE 308

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q8IN81|FRU_DROME Sex determination protein fruitless OS=Drosophila melanogaster GN=fru PE=1 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 79/119 (66%), Gaps = 8/119 (6%)

Query: 6   QEFCLRANQE--TMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N     +  ++ SLL++E L D+  A EG+ +KAH+ +L  CSP FE  +F  
Sbjct: 104 QQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSACSPYFET-IF-- 160

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSES 121
           L +QH    PI+   + +++E++S++D+MYKGEVN+    L  FLK AE LQ+RGL+++
Sbjct: 161 LQNQH--PHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTDN 217

Probably acts as a transcriptional regulator. Part of the somatic sex determination hierarchy; sex determination genes transformer (tra) and transformer-2 (tra-2) switch fru splicing from the male-specific pattern to the female-specific pattern through activation of the female-specific fru 5'-splice site. Vital for the development of males and females. Controls the development of the male specific abdominal muscle of Lawrence. Plays a role in male courtship behavior and sexual orientation. Enhances male-specific expression of takeout in brain-associated fat body.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
328714968	491	PREDICTED: longitudinals lacking protein	0.751	0.228	0.608	5e-31
328700166	355	PREDICTED: hypothetical protein LOC10016	0.778	0.326	0.572	1e-30
380012353	511	PREDICTED: uncharacterized protein LOC10	0.926	0.270	0.503	1e-29
350400313	482	PREDICTED: hypothetical protein LOC10074	0.785	0.242	0.56	2e-29
157121102	566	lola [Aedes aegypti] gi|108874719|gb|EAT	0.771	0.203	0.552	2e-29
340717915	482	PREDICTED: hypothetical protein LOC10064	0.785	0.242	0.56	3e-29
242018527	303	protein tramtrack, beta isoform, putativ	0.798	0.392	0.543	3e-29
328703888	579	PREDICTED: zinc finger protein 266-like	0.778	0.200	0.556	3e-29
307206162	458	Longitudinals lacking protein, isoforms	0.778	0.253	0.556	3e-29
157121098	731	lola [Aedes aegypti] gi|108874717|gb|EAT	0.771	0.157	0.552	4e-29

>gi|328714968|ref|XP_001947442.2| PREDICTED: longitudinals lacking protein, isoforms A/B/D/L-like [Acyrthosiphon pisum]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 90/120 (75%), Gaps = 8/120 (6%)

Query: 5   SQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFE 61
           SQ+FCLR N  Q T+IS+ +SLL+  TLVD   +AEG+YLKAHKVVL  CSP   +    
Sbjct: 4   SQQFCLRWNNHQRTLISVFDSLLESGTLVDCTLAAEGRYLKAHKVVLSACSPYLGV---- 59

Query: 62  MLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSES 121
            LLSQH ++ PILI  + KF ELKSM+DYMY+GEVNI+ +EL  FLKAAE LQI+GL+ES
Sbjct: 60  -LLSQHQEKHPILILKDIKFQELKSMLDYMYRGEVNISQEELGTFLKAAESLQIKGLTES 118

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700166|ref|XP_001950896.2| PREDICTED: hypothetical protein LOC100169151 [Acyrthosiphon pisum]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 91/124 (73%), Gaps = 8/124 (6%)

Query: 1   MTEGSQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEI 57
           M   +Q FCLR N  Q T+IS+ ++LL+  TLVD   +AEGQYLKAHKVVL  CSP    
Sbjct: 1   MAGDNQHFCLRWNNHQSTLISVFDTLLESGTLVDCTLAAEGQYLKAHKVVLSACSP---- 56

Query: 58  PLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRG 117
              E+LLSQH ++ PI+I  + KF ELKSM+DYMY+GEVNI+ D+L+ FLKAAE LQI+G
Sbjct: 57  -YLELLLSQHYEKHPIVILKDVKFQELKSMMDYMYRGEVNISQDQLSTFLKAAESLQIKG 115

Query: 118 LSES 121
           L++ 
Sbjct: 116 LTDG 119

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012353|ref|XP_003690249.1| PREDICTED: uncharacterized protein LOC100864777 [Apis florea]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 98/149 (65%), Gaps = 11/149 (7%)

Query: 3   EGSQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPL 59
           E  Q+FCLR N  Q T+I   ++LL+  TLVD   +AEG+YLKAHKVVL  CSP      
Sbjct: 2   EDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSP-----Y 56

Query: 60  FEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
           FE LLS+H D+ P+ I  + KF ELK+M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS
Sbjct: 57  FEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLS 116

Query: 120 ESESTTQTAVHYPDDDEEDYSQAGTSQMD 148
           ES ++  +   +    ++      TSQMD
Sbjct: 117 ESRTSGSSKTDF---RQQKVVPQTTSQMD 142

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400313|ref|XP_003485796.1| PREDICTED: hypothetical protein LOC100749313 [Bombus impatiens]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 90/125 (72%), Gaps = 8/125 (6%)

Query: 3   EGSQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPL 59
           E  Q+FCLR N  Q T+I   ++LL+  TLVD   +AEG+YLKAHKVVL  CSP      
Sbjct: 2   EDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSP-----Y 56

Query: 60  FEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
           FE LLS+H D+ P+ I  + KF ELK+M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS
Sbjct: 57  FEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLS 116

Query: 120 ESEST 124
           ES+++
Sbjct: 117 ESKTS 121

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121102|ref|XP_001659826.1| lola [Aedes aegypti] gi|108874719|gb|EAT38944.1| AAEL009212-PD [Aedes aegypti]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 89/123 (72%), Gaps = 8/123 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T+IS+ ++LL+  TLVD   +AEG++LKAHKVVL  CSP      F  
Sbjct: 5   QQFCLRWNNHQSTLISVFDTLLENGTLVDCTLAAEGKFLKAHKVVLSACSP-----YFAA 59

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LLSQ  D+ PI I  + KF EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS++ 
Sbjct: 60  LLSQQYDKHPIFILKDVKFQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNR 119

Query: 123 STT 125
           ST+
Sbjct: 120 STS 122

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717915|ref|XP_003397419.1| PREDICTED: hypothetical protein LOC100649963 [Bombus terrestris]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 90/125 (72%), Gaps = 8/125 (6%)

Query: 3   EGSQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPL 59
           E  Q+FCLR N  Q T+I   ++LL+  TLVD   +AEG+YLKAHKVVL  CSP      
Sbjct: 2   EDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSP-----Y 56

Query: 60  FEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
           FE LLS+H D+ P+ I  + KF ELK+M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS
Sbjct: 57  FEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLS 116

Query: 120 ESEST 124
           ES+++
Sbjct: 117 ESKTS 121

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018527|ref|XP_002429726.1| protein tramtrack, beta isoform, putative [Pediculus humanus corporis] gi|212514732|gb|EEB16988.1| protein tramtrack, beta isoform, putative [Pediculus humanus corporis]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T++++ + LL+K  LVD   +AEGQ L AHKVVL  CSP       E 
Sbjct: 4   QQFCLRWNNHQSTLVAVFDGLLEKGVLVDCTLAAEGQQLTAHKVVLAACSP-----FLET 58

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LLS+H D+ PILI  + KF+ELK+M+DYMY+GEVNI+ D+L  FLKAAE LQI+GLS+S 
Sbjct: 59  LLSRHYDKHPILILKDVKFSELKAMMDYMYRGEVNISQDQLGTFLKAAESLQIKGLSDSG 118

Query: 123 STTQTAV 129
              + +V
Sbjct: 119 GGNEKSV 125

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328703888|ref|XP_001946809.2| PREDICTED: zinc finger protein 266-like [Acyrthosiphon pisum]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 89/124 (71%), Gaps = 8/124 (6%)

Query: 1   MTEGSQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEI 57
           M   +Q FCLR N  Q T+IS+ +  L+  TLVD   +AEGQYLKAHKVVL  CSP    
Sbjct: 1   MAGDNQNFCLRWNHYQSTLISVFDMFLESGTLVDCTLTAEGQYLKAHKVVLSACSP---- 56

Query: 58  PLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRG 117
              ++LLSQH ++ PI+I  + KF ELK+MIDYMY+GEVNI+ D+L+ FLKAAE LQI+G
Sbjct: 57  -YLQLLLSQHYEKHPIVILKDVKFQELKNMIDYMYRGEVNISQDQLSTFLKAAESLQIKG 115

Query: 118 LSES 121
           L++ 
Sbjct: 116 LTDG 119

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206162|gb|EFN84242.1| Longitudinals lacking protein, isoforms F/I/K/T [Harpegnathos saltator]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 87/124 (70%), Gaps = 8/124 (6%)

Query: 3   EGSQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPL 59
           E  Q+FCLR N  Q T++   ++LL+  TLVD   +AEG+YLKAHKVVL  CSP FE   
Sbjct: 2   EDDQQFCLRWNNHQSTLVQNFDTLLESGTLVDCTLAAEGRYLKAHKVVLSACSPYFE--- 58

Query: 60  FEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
              LLS+H D+ PI I  +  FNELK+M+DYMY+GEVNI  D+L   LKAAE LQIRGLS
Sbjct: 59  --GLLSEHYDKHPIFILKDVTFNELKAMMDYMYRGEVNIGQDQLTPLLKAAESLQIRGLS 116

Query: 120 ESES 123
           ++ +
Sbjct: 117 DNRT 120

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121098|ref|XP_001659824.1| lola [Aedes aegypti] gi|108874717|gb|EAT38942.1| AAEL009212-PC [Aedes aegypti]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 89/123 (72%), Gaps = 8/123 (6%)

Query: 6   QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           Q+FCLR N  Q T+IS+ ++LL+  TLVD   +AEG++LKAHKVVL  CSP      F  
Sbjct: 5   QQFCLRWNNHQSTLISVFDTLLENGTLVDCTLAAEGKFLKAHKVVLSACSP-----YFAA 59

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
           LLSQ  D+ PI I  + KF EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS++ 
Sbjct: 60  LLSQQYDKHPIFILKDVKFQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNR 119

Query: 123 STT 125
           ST+
Sbjct: 120 STS 122

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.778	0.119	0.516	9.6e-26
FB|FBgn0263108	798	BtbVII "BTB-protein-VII" [Dros	0.738	0.137	0.474	9.5e-21
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.771	0.141	0.430	1.3e-20
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.919	0.128	0.392	5.2e-20
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.758	0.118	0.421	1.2e-19
FB|FBgn0029824	676	CG3726 [Drosophila melanogaste	0.718	0.158	0.409	2.2e-18
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.765	0.116	0.368	6.2e-18
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.798	0.937	0.362	1.2e-17
FB|FBgn0264981	1089	mamo "maternal gene required f	0.859	0.117	0.355	1.4e-16
FB|FBgn0030710	514	CG8924 [Drosophila melanogaste	0.791	0.229	0.385	6e-16

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 303 (111.7 bits), Expect = 9.6e-26, P = 9.6e-26
 Identities = 64/124 (51%), Positives = 88/124 (70%)

Query:     3 EGSQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPL 59
             +  Q+FCLR N  Q T+IS+ ++LL+ ETLVD   +AEG++LKAHKVVL  CSP F    
Sbjct:     2 DDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFAT-- 59

Query:    60 FEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
                LL +  D+ PI I  + K+ EL++M+DYMY+GEVNI+ D+L   LKAAE LQI+GLS
Sbjct:    60 ---LLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLS 116

Query:   120 ESES 123
             ++ +
Sbjct:   117 DNRT 120

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 9.5e-21, P = 9.5e-21
 Identities = 56/118 (47%), Positives = 81/118 (68%)

Query:     6 QEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
             Q+FCLR N  Q   IS+ +SLL   TLVD+  +AEG+ L+AHK+VL  CS  F+  LF  
Sbjct:     4 QQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQA-LFTT 62

Query:    63 LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
                QH    PI+I  + ++++LK+M+D+MY GEVN++ ++L H LK AE L+I+GL+E
Sbjct:    63 NPCQH----PIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAE 116

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 53/123 (43%), Positives = 79/123 (64%)

Query:     1 MTEGSQEFCLRAN--QETMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEI 57
             M   SQ FCLR N  Q  ++S+ + LL  ET  D+  A EGQ+LKAHK+VL  CSP F  
Sbjct:     1 MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNT 60

Query:    58 PLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRG 117
                  L   H ++ PI+I  +  ++++KS++D+MY+GEV++  + L  FL+ AE L+I+G
Sbjct:    61 -----LFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKG 115

Query:   118 LSE 120
             L+E
Sbjct:   116 LTE 118

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 250 (93.1 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 60/153 (39%), Positives = 95/153 (62%)

Query:     3 EGSQEFCLRAN--QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPL 59
             EG Q+FCLR N  Q  + ++ + LL+ E+ VD+  S EG  +KAHK+VL  CSP F+  L
Sbjct:   194 EG-QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYFQA-L 251

Query:    60 FEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
             F     QH    PI+I  +  +++LK+++++MYKGE+N+  D++N  LK AE L+IRGL+
Sbjct:   252 FYDNPCQH----PIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLA 307

Query:   120 ESESTT----QTAVH---YPDDDEEDYSQAGTS 145
             E  +       +A+    + D+DEE+   + T+
Sbjct:   308 EVSAGRGEGGASALPMSAFDDEDEEEELASATA 340

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 51/121 (42%), Positives = 80/121 (66%)

Query:     6 QEFCLRANQE--TMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEIPLFEM 62
             Q+FCLR N     +  ++ SLL++E L D+  A EG+ +KAH+ +L  CSP FE  +F  
Sbjct:   104 QQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSACSPYFET-IF-- 160

Query:    63 LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESE 122
             L +QH    PI+   + +++E++S++D+MYKGEVN+    L  FLK AE LQ+RGL+++ 
Sbjct:   161 LQNQH--PHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTDNN 218

Query:   123 S 123
             +
Sbjct:   219 N 219

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

FB|FBgn0029824 CG3726 [Drosophila melanogaster (taxid:7227)]

 Score = 210 (79.0 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 50/122 (40%), Positives = 74/122 (60%)

Query:     6 QEFCLR-----ANQETMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEIPL 59
             Q++CLR     +N +TM S    LL +    D+  A EGQ ++AH+VVLC CS       
Sbjct:     4 QQYCLRWKYHHSNLQTMFS---QLLDRGCFCDVTLACEGQLIRAHRVVLCACST-----F 55

Query:    60 FEMLLSQHNDER-PILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
             F+ +LS +  ER PI+I  +  F E+K +I++MYKGE+N+    L   LK A+ L+I+GL
Sbjct:    56 FDAVLSNYASERDPIIIMKDVTFAEVKCLIEFMYKGEINVEHSSLPSLLKTADDLKIKGL 115

Query:   119 SE 120
             +E
Sbjct:   116 AE 117

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 6.2e-18, P = 6.2e-18
 Identities = 45/122 (36%), Positives = 82/122 (67%)

Query:     2 TEGSQEFCLRAN--QETMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEIP 58
             +  SQ+FCLR N  Q  + ++ + LL+ E  VD+  A +G+ +KAHK+VL  CSP F+  
Sbjct:    96 SSSSQQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQT- 154

Query:    59 LFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
                 LL++   + PI+I  +  +++LK+++++MY+GE+N++ D++   L+ AE L++RGL
Sbjct:   155 ----LLAETPCQHPIVIMRDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGL 210

Query:   119 SE 120
             ++
Sbjct:   211 AD 212

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 46/127 (36%), Positives = 79/127 (62%)

Query:     1 MTEGSQEFCLRAN--QETMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEI 57
             M    Q+F L+ N  Q  M++    L  +++  D+  A EGQ  KAHK+VL  CSP F+ 
Sbjct:     1 MMSSDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMVLSACSPYFKA 60

Query:    58 PLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRG 117
                  LL ++  + PI+I  +  +  L++++++MY GEVN++ ++L  FLK A+RL+++G
Sbjct:    61 -----LLEENPSKHPIIILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKG 115

Query:   118 LSESEST 124
             L+E+ S+
Sbjct:   116 LAETPSS 122

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 49/138 (35%), Positives = 84/138 (60%)

Query:     4 GSQEFCLRAN--QETMISLVNSLLKKETLVD--LRSAEGQYLKAHKVVLCTCSPVFEIPL 59
             GS+ +CLR N  Q  ++ + + LL+  +LVD  L  +EG  ++AHKVVL  CS  F+   
Sbjct:     2 GSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQ--- 58

Query:    60 FEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
                L  +H +   I+I  + +F EL++++++MYKGEVN+   +L+  LK AE L+++GL+
Sbjct:    59 --SLFLEHPEGHLIVILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLA 116

Query:   120 ESESTTQTAVHYPDDDEE 137
             E  +   T +  P+ + +
Sbjct:   117 EM-TNQNTTLREPEREPD 133

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0035041 "sperm chromatin decondensation" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0007276 "gamete generation" evidence=IMP

FB|FBgn0030710 CG8924 [Drosophila melanogaster (taxid:7227)]

 Score = 207 (77.9 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 49/127 (38%), Positives = 76/127 (59%)

Query:     1 MTEGSQEFCLRANQE--TMISLVNSLLKKETLVDLRSA-EGQYLKAHKVVLCTCSPVFEI 57
             M+  +QEFC+R N    ++ +    LL  +  VD+  A EGQ +  H++VL  CS  FE 
Sbjct:     1 MSGATQEFCVRWNSHLGSIGAAFPQLLAGQRFVDVTLACEGQQVHCHRLVLAACSTYFEA 60

Query:    58 PLFEMLLSQHNDERPILIFS-ETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIR 116
                  +L++H  + P++I   E K  E+++++D+MYKGEVN+    L   L+ AE+LQIR
Sbjct:    61 -----ILAEHPCKHPVIILPREIKLWEIQALVDFMYKGEVNVTQAGLGQLLRCAEQLQIR 115

Query:   117 GLSESES 123
             GL  SE+
Sbjct:   116 GLYGSEA 122

GO:0003677 "DNA binding" evidence=IEA;NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
pfam00651	101	pfam00651, BTB, BTB/POZ domain	7e-17
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	6e-14
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	0.002

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 70.7 bits (174), Expect = 7e-17
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N L +   L D+      +   AHK VL  CSP F+     +       E  +   S   
Sbjct: 2   NELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFK----ALFTGNKEVEITLEDVS--- 54

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
             + +++++++Y G++ I  + ++  L  A++LQI  L +
Sbjct: 55  PEDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALID 94

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 63.1 bits (154), Expect = 6e-14
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 36  AEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH-NDERPILIFSETKFNELKSMIDYMYKG 94
             G+   AHK VL   SP F+     +  S     ++  +   +    + +++++++Y G
Sbjct: 6   VGGKKFHAHKAVLAAHSPYFK----ALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYTG 61

Query: 95  EVNIAPDELNHFLKAAERLQIRGLSES 121
           ++++  + +   L+ A+ LQI GL E 
Sbjct: 62  KLDLPEENVEELLELADYLQIPGLVEL 88

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 42  KAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPD 101
           K HK++L + S  F+     M  +   +    L      FNE+   I Y+Y G++NI  +
Sbjct: 24  KVHKIILSSSSEYFKK----MFKNNFKENEINLNIDYDSFNEV---IKYIYTGKINITSN 76

Query: 102 ELNHFLKAAERLQI 115
            +   L  A  L I
Sbjct: 77  NVKDILSIANYLII 90

Length = 534

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PHA02713	557	hypothetical protein; Provisional	99.92
KOG4441|consensus	571		99.91
PHA02790	480	Kelch-like protein; Provisional	99.89
PHA03098	534	kelch-like protein; Provisional	99.84
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.82
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.74
KOG4350|consensus	620		99.69
KOG4591|consensus	280		99.61
KOG2075|consensus	521		99.56
KOG4682|consensus	488		99.18
KOG0783|consensus	1267		98.9
KOG0783|consensus	1267		98.66
KOG2838|consensus	401		98.12
KOG2838|consensus	401		97.92
KOG2716|consensus	230		97.86
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	97.77
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	97.4
KOG3473|consensus	112		97.24
KOG0511|consensus	516		97.17
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	96.81
KOG0511|consensus	516		96.64
KOG1724|consensus	162		96.44
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	96.42
KOG1987|consensus	297		96.29
KOG2714|consensus	465		95.76
KOG1665|consensus	302		95.15
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	94.45
KOG2715|consensus	210		90.79
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	89.12
KOG3840|consensus	438		85.11
KOG2723|consensus	221		84.29

>PHA02713 hypothetical protein; Provisional

Probab=99.92  E-value=4.4e-25  Score=187.82  Aligned_cols=127  Identities=20%  Similarity=0.259  Sum_probs=117.4

Q ss_pred             ceeecccHHHHHHHHHHHHhCCCcceEE-EeC-CeEEEeeeeeecccCCCCChHHHHHhcCC--CCC-CCCeEEeCCCCH
Q psy17455          7 EFCLRANQETMISLVNSLLKKETLVDLR-SAE-GQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HND-ERPILIFSETKF   81 (149)
Q Consensus         7 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~-g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~-~~~~i~l~~~~~   81 (149)
                      .+.++.|+..+++.|++||.++.+|||+ .++ |++|+|||+||||+|+|     |++||..  .+. ...+|.|.++++
T Consensus         2 ~~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~Y-----F~amF~~~~~e~~~~~~v~l~~v~~   76 (557)
T PHA02713          2 DIDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKY-----FRTLFTTPMIIRDLVTRVNLQMFDK   76 (557)
T ss_pred             CcchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHH-----HHHHhcCCchhhccCceEEeccCCH
Confidence            3567788999999999999999999999 887 89999999999999999     9999985  333 467899999999


Q ss_pred             HHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhh
Q psy17455         82 NELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYS  140 (149)
Q Consensus        82 ~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~  140 (149)
                      ++|+.+|+|+|||+  |+.+++++++.+|++||++.|+++|.+++...+.++||-....
T Consensus        77 ~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~  133 (557)
T PHA02713         77 DAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH  133 (557)
T ss_pred             HHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence            99999999999997  6899999999999999999999999999999999999988764

>KOG4441|consensus

Probab=99.91  E-value=6.8e-25  Score=186.98  Aligned_cols=132  Identities=23%  Similarity=0.359  Sum_probs=124.4

Q ss_pred             cceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHH
Q psy17455          6 QEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFN   82 (149)
Q Consensus         6 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~   82 (149)
                      ..|..+.|...+++.|+.+|..+.||||+ .+++++|+|||.||||+|+|     |++||..  .+....+|.+.+++++
T Consensus        12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~Y-----FraMFt~~l~e~~~~~i~l~~v~~~   86 (571)
T KOG4441|consen   12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPY-----FRAMFTSGLKESKQKEINLEGVDPE   86 (571)
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHH-----HHHHhcCCcccccceEEEEecCCHH
Confidence            46778888999999999999999999999 99999999999999999999     9999984  7888999999999999


Q ss_pred             HHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhc
Q psy17455         83 ELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQA  142 (149)
Q Consensus        83 ~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  142 (149)
                      +++.+++|+|||++.|+.+++++|+.+|.+|||+.++++|.+++...+.|+||-.....+
T Consensus        87 ~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a  146 (571)
T KOG4441|consen   87 TLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFA  146 (571)
T ss_pred             HHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998654443

>PHA02790 Kelch-like protein; Provisional

Probab=99.89  E-value=1.5e-23  Score=175.75  Aligned_cols=123  Identities=16%  Similarity=0.139  Sum_probs=108.6

Q ss_pred             HHHHHHHHhCCCcceEEEeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEe--CCCCHHHHHHHhhhhcC
Q psy17455         18 ISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIF--SETKFNELKSMIDYMYK   93 (149)
Q Consensus        18 ~~~l~~l~~~~~~~Dv~~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l--~~~~~~~~~~ll~f~Yt   93 (149)
                      .+.+-.++.++.||||+.+.|++|+|||+||||+|+|     |++||.+  .|+. ..|.+  .++++++|+.+|+|+||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~HR~VLAa~S~Y-----FraMF~~~~~Es~-~~v~~~~~~v~~~~l~~lldy~YT   83 (480)
T PHA02790         10 CKNILALSMTKKFKTIIEAIGGNIIVNSTILKKLSPY-----FRTHLRQKYTKNK-DPVTRVCLDLDIHSLTSIVIYSYT   83 (480)
T ss_pred             hhhHHHHHhhhhhceEEEEcCcEEeeehhhhhhcCHH-----HHHHhcCCccccc-cceEEEecCcCHHHHHHHHHhhee
Confidence            3556678999999999955677999999999999999     9999975  4443 34554  48999999999999999


Q ss_pred             CcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455         94 GEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ  146 (149)
Q Consensus        94 g~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (149)
                      |++.|+.+|+++++.||++||++.++++|.+++...+.|+||-.....|...+
T Consensus        84 g~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~  136 (480)
T PHA02790         84 GKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYG  136 (480)
T ss_pred             eeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999888776544

>PHA03098 kelch-like protein; Provisional

Probab=99.84  E-value=1.2e-21  Score=165.37  Aligned_cols=113  Identities=18%  Similarity=0.269  Sum_probs=104.4

Q ss_pred             CCCcceEE-Ee--CCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhH
Q psy17455         27 KETLVDLR-SA--EGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDEL  103 (149)
Q Consensus        27 ~~~~~Dv~-~~--~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~  103 (149)
                      ++.||||+ .+  +|++|+|||.||+++|+|     |++||.+... ...|.+.+ ++++|+.+|+|+|||++.++.+++
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~y-----F~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~   78 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEY-----FKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNV   78 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHH-----HHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHH
Confidence            88999999 76  999999999999999999     9999986444 67899999 999999999999999999999999


Q ss_pred             HHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455        104 NHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ  146 (149)
Q Consensus       104 ~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (149)
                      .+++.+|++|+++.|+++|++.+...+.+++|.+....|...+
T Consensus        79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~  121 (534)
T PHA03098         79 KDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYG  121 (534)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999998877665544

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.82  E-value=4.4e-21  Score=130.22  Aligned_cols=103  Identities=24%  Similarity=0.471  Sum_probs=90.4

Q ss_pred             HHHHHhCCCcceEE-EeC-CeEEEeeeeeecccCCCCChHHHHHhcCCC-CCCC--CeEEeCCCCHHHHHHHhhhhcCCc
Q psy17455         21 VNSLLKKETLVDLR-SAE-GQYLKAHKVVLCTCSPVFEIPLFEMLLSQH-NDER--PILIFSETKFNELKSMIDYMYKGE   95 (149)
Q Consensus        21 l~~l~~~~~~~Dv~-~~~-g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~-~~~~--~~i~l~~~~~~~~~~ll~f~Ytg~   95 (149)
                      |+++++++.++|++ .++ |+.|+|||.||+++|+|     |+.+|... ....  .+|.++++++++|+.+++|+|+|+
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~-----F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~   75 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPY-----FRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGE   75 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHH-----HHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSE
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchh-----hhhcccccccccccccccccccccccccccccccccCCc
Confidence            57899999999999 999 89999999999999999     99999875 2333  468889999999999999999999


Q ss_pred             ccCC-hhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         96 VNIA-PDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        96 ~~i~-~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      +.++ .+++.+++.+|++|+++.|++.|...+.+
T Consensus        76 ~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~  109 (111)
T PF00651_consen   76 IEINSDENVEELLELADKLQIPELKKACEKFLQE  109 (111)
T ss_dssp             EEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            9998 99999999999999999999999876543

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.74  E-value=4.5e-18  Score=109.75  Aligned_cols=87  Identities=28%  Similarity=0.598  Sum_probs=80.5

Q ss_pred             eEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCC--CCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHHH
Q psy17455         32 DLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHND--ERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLK  108 (149)
Q Consensus        32 Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~--~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~  108 (149)
                      |++ .++|+.|++||.+|+++|+|     |+.+|.....  ....+.++++++++|+.+++|+|+|++.++..++..++.
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~-----f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~   75 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPY-----FKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLE   75 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHH-----HHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHH
Confidence            678 89999999999999999999     9999986443  678899999999999999999999999999999999999


Q ss_pred             HHhhcCccchhhhhh
Q psy17455        109 AAERLQIRGLSESES  123 (149)
Q Consensus       109 ~A~~l~i~~L~~~~~  123 (149)
                      +|++|+++.|.+.|+
T Consensus        76 ~a~~~~~~~l~~~c~   90 (90)
T smart00225       76 LADYLQIPGLVELCE   90 (90)
T ss_pred             HHHHHCcHHHHhhhC
Confidence            999999999999874

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4350|consensus

Probab=99.69  E-value=6.8e-18  Score=136.43  Aligned_cols=125  Identities=21%  Similarity=0.339  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcC--CCCCCCCeEEeCCCCHHHHHHHhhh
Q psy17455         14 QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLS--QHNDERPILIFSETKFNELKSMIDY   90 (149)
Q Consensus        14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~--~~~~~~~~i~l~~~~~~~~~~ll~f   90 (149)
                      ...+.+.+.+++.+.+++||+ +++.++|+|||+|||++|.|     |++++-  ..+..+..|.+.+...++|+.+|+|
T Consensus        28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~y-----FRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrY  102 (620)
T KOG4350|consen   28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSY-----FRALLYGGMQESHQQLIPLQETNSEAFRALLRY  102 (620)
T ss_pred             ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHH-----HHHHHhhhhhhhhhcccccccccHHHHHHHHHH
Confidence            445678889999999999999 99999999999999999999     777763  3677788999999999999999999


Q ss_pred             hcCCcccCC---hhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhcc
Q psy17455         91 MYKGEVNIA---PDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAG  143 (149)
Q Consensus        91 ~Ytg~~~i~---~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  143 (149)
                      +|||++.+.   .+-+.+++.+|.+|++..|..+.++...+.+.-++....+-.|.
T Consensus       103 iYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~  158 (620)
T KOG4350|consen  103 IYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAY  158 (620)
T ss_pred             HhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHH
Confidence            999998764   56678999999999999999999999888888777666554443

>KOG4591|consensus

Probab=99.61  E-value=2.7e-16  Score=116.95  Aligned_cols=124  Identities=23%  Similarity=0.372  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHhCCCcceEE-EeCC---eEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhh
Q psy17455         14 QETMISLVNSLLKKETLVDLR-SAEG---QYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMID   89 (149)
Q Consensus        14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g---~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~   89 (149)
                      .+.++.....+++.+.|+|++ .++|   +.++|||.||||||++     ++-- ........+..+++..+++|...++
T Consensus        50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~-----Wkfa-N~~dekse~~~~dDad~Ea~~t~iR  123 (280)
T KOG4591|consen   50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDF-----WKFA-NGGDEKSEELDLDDADFEAFHTAIR  123 (280)
T ss_pred             HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcch-----hhhc-cCCCcchhhhcccccCHHHHHHhhe
Confidence            778888889999999999999 8875   6799999999999997     6522 2333445677888999999999999


Q ss_pred             hhcCCcccCChhh--HHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhcc
Q psy17455         90 YMYKGEVNIAPDE--LNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAG  143 (149)
Q Consensus        90 f~Ytg~~~i~~~~--~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  143 (149)
                      |+||+++....+.  +.+++++|.+|+++-|++.|+..+.+.+..+||...+..+.
T Consensus       124 WIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AE  179 (280)
T KOG4591|consen  124 WIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAE  179 (280)
T ss_pred             eeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHH
Confidence            9999999886654  68899999999999999999999999999999988776554

>KOG2075|consensus

Probab=99.56  E-value=4.2e-15  Score=121.96  Aligned_cols=123  Identities=23%  Similarity=0.292  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHhCCCcceEE-EeCC-----eEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHH
Q psy17455         14 QETMISLVNSLLKKETLVDLR-SAEG-----QYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELK   85 (149)
Q Consensus        14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g-----~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~   85 (149)
                      ..++..+...++++...+|+. ++++     +.|+|||.|||..|.+     |.+||.+  .+....+|.++++.+.+|.
T Consensus        98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~V-----FdaMf~g~~a~~~s~ei~lpdvepaaFl  172 (521)
T KOG2075|consen   98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDV-----FDAMFYGGLAEDASLEIRLPDVEPAAFL  172 (521)
T ss_pred             hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHH-----HHHHhccCcccccCceeecCCcChhHhH
Confidence            667888889999999999999 8873     5799999999999999     9999976  3445789999999999999


Q ss_pred             HHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhh
Q psy17455         86 SMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQ  141 (149)
Q Consensus        86 ~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~  141 (149)
                      .+|+|+|++.+.+..+++..++.+|++|-++.|.+.|...+...+.+++.....+|
T Consensus       173 ~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q  228 (521)
T KOG2075|consen  173 AFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQ  228 (521)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988776665

>KOG4682|consensus

Probab=99.18  E-value=6.4e-11  Score=95.97  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=99.6

Q ss_pred             HHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeC----CCCHHHHHHHhhhhcC
Q psy17455         21 VNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFS----ETKFNELKSMIDYMYK   93 (149)
Q Consensus        21 l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~----~~~~~~~~~ll~f~Yt   93 (149)
                      .+.|+.+|.-+||. .+-|++++.||.-|.- |+|     |++||.+  .++....|.+.    .|+..+|..++.-+|.
T Consensus        60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~y-----f~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~  133 (488)
T KOG4682|consen   60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEY-----FKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYR  133 (488)
T ss_pred             HHHHHhcCCCcceehhhccceeeeeeeeeec-cHH-----HHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhh
Confidence            46678899999999 9999999999999975 899     9999987  45566655553    7999999999999999


Q ss_pred             CcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhh
Q psy17455         94 GEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEED  138 (149)
Q Consensus        94 g~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~  138 (149)
                      ++++|..+.+..++.+|.++++++|.+.|.+...+.++|.....-
T Consensus       134 dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~y  178 (488)
T KOG4682|consen  134 DEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGY  178 (488)
T ss_pred             hheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHh
Confidence            999999999999999999999999999999999999999876543

>KOG0783|consensus

Probab=98.90  E-value=3.2e-10  Score=98.72  Aligned_cols=107  Identities=19%  Similarity=0.203  Sum_probs=83.2

Q ss_pred             ceEEEeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCC--CCHHHHHHHhhhhcC-CcccC-----Chhh
Q psy17455         31 VDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSE--TKFNELKSMIDYMYK-GEVNI-----APDE  102 (149)
Q Consensus        31 ~Dv~~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~--~~~~~~~~ll~f~Yt-g~~~i-----~~~~  102 (149)
                      |||+.-+|+.++|||++|+||++|     |..||..-+.....|.+.+  +..+.++.+|+|+|+ ++..+     ..+-
T Consensus       713 ~~i~~KDGkvl~aHkc~L~aRlEY-----F~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF  787 (1267)
T KOG0783|consen  713 TVIKLKDGKVLKAHKCFLSARLEY-----FSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF  787 (1267)
T ss_pred             EEEEecCCcCcccceeEeeeHHHH-----HHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence            444444899999999999999999     9999975333333355554  459999999999994 55443     2344


Q ss_pred             HHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhc
Q psy17455        103 LNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQA  142 (149)
Q Consensus       103 ~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  142 (149)
                      +..++..|+.|-|.+|+++|+..+...++-.++.++.--+
T Consensus       788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefa  827 (1267)
T KOG0783|consen  788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFA  827 (1267)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHH
Confidence            7889999999999999999999999988888887765443

>KOG0783|consensus

Probab=98.66  E-value=5.6e-08  Score=85.05  Aligned_cols=106  Identities=17%  Similarity=0.301  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhCC----CcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC--------------CCCCCeE
Q psy17455         14 QETMISLVNSLLKKE----TLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--------------NDERPIL   74 (149)
Q Consensus        14 ~~~l~~~l~~l~~~~----~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~--------------~~~~~~i   74 (149)
                      .+++...+..++...    .+.||+ .||++.|+|||.|||++|++     |+.+|...              ......|
T Consensus       538 ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~f-----lrkL~l~~~~~s~~~dIY~~~~~~~~~~~  612 (1267)
T KOG0783|consen  538 SSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSF-----LRKLLLQKKKSSVSNDIYIEEITQSHSTI  612 (1267)
T ss_pred             cccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHH-----HHHHHHhhccccccceeeeecccccCcee
Confidence            444667777776654    467899 99999999999999999999     99988531              1233466


Q ss_pred             EeCCCCHHHHHHHhhhhcCCcccCC--------------hhhHHH-------HHHHHhhcCccchhhhhhh
Q psy17455         75 IFSETKFNELKSMIDYMYKGEVNIA--------------PDELNH-------FLKAAERLQIRGLSESEST  124 (149)
Q Consensus        75 ~l~~~~~~~~~~ll~f~Ytg~~~i~--------------~~~~~~-------ll~~A~~l~i~~L~~~~~~  124 (149)
                      .+++++|..|+.+|.|+||+..--+              ++|..+       +...+.++++-.|......
T Consensus       613 ~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s  683 (1267)
T KOG0783|consen  613 RVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS  683 (1267)
T ss_pred             eeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence            6889999999999999999854221              233344       6667777777777655443

>KOG2838|consensus

Probab=98.12  E-value=2.2e-06  Score=67.08  Aligned_cols=98  Identities=12%  Similarity=0.240  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCC----eEEeCCCCHHHHHHHh
Q psy17455         14 QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERP----ILIFSETKFNELKSMI   88 (149)
Q Consensus        14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~----~i~l~~~~~~~~~~ll   88 (149)
                      ..++++.+...++.....|+- .....-|+|||++|+++|++     |+.+....+....    .|.+-+++.+.|+.+|
T Consensus       114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpf-----fK~l~nsd~e~~ae~i~dik~ag~dm~~feafL  188 (401)
T KOG2838|consen  114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPF-----FKILANSDEEPEAEDICDIKFAGFDMDAFEAFL  188 (401)
T ss_pred             hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcc-----hhhhccCCCCcchhhhhhhhhhccChHHHHHHH
Confidence            566777777777777777877 77777899999999999999     9988776544333    4455589999999999


Q ss_pred             hhhcCCcccCC---hhhHHHHHHHHhhcCcc
Q psy17455         89 DYMYKGEVNIA---PDELNHFLKAAERLQIR  116 (149)
Q Consensus        89 ~f~Ytg~~~i~---~~~~~~ll~~A~~l~i~  116 (149)
                      .++|||+....   ..|+.-|.++..-|+..
T Consensus       189 h~l~tgEfgmEd~~fqn~diL~QL~edFG~~  219 (401)
T KOG2838|consen  189 HSLITGEFGMEDLGFQNSDILEQLCEDFGCF  219 (401)
T ss_pred             HHHHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence            99999987543   34455566677666643

>KOG2838|consensus

Probab=97.92  E-value=3.4e-06  Score=66.08  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhCCCcce-EE--EeCCe--------------EEEeeeeeecccCCCCChHHHHHhcC-----CCC-----
Q psy17455         16 TMISLVNSLLKKETLVD-LR--SAEGQ--------------YLKAHKVVLCTCSPVFEIPLFEMLLS-----QHN-----   68 (149)
Q Consensus        16 ~l~~~l~~l~~~~~~~D-v~--~~~g~--------------~~~aHk~vLaa~S~~~~~~~f~~~f~-----~~~-----   68 (149)
                      .+-..++.++..-..-| +.  .++|+              +++||++|.+++|++     |+.++.     +.+     
T Consensus       221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~f-----fRnLL~RkiregeE~sdrt  295 (401)
T KOG2838|consen  221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKF-----FRNLLLRKIREGEEGSDRT  295 (401)
T ss_pred             hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHH-----HHHHHHHHhhccccccccc
Confidence            34444555555544434 33  45553              589999999999999     766652     222     


Q ss_pred             -CCCCeEEeCC-CCHHH-HHHHhhhhcCCcccCC----------------------------hhhHHHHHHHHhhcCccc
Q psy17455         69 -DERPILIFSE-TKFNE-LKSMIDYMYKGEVNIA----------------------------PDELNHFLKAAERLQIRG  117 (149)
Q Consensus        69 -~~~~~i~l~~-~~~~~-~~~ll~f~Ytg~~~i~----------------------------~~~~~~ll~~A~~l~i~~  117 (149)
                       ..+..|.+.+ |=|.. -..++.++||+.+.++                            ...+.+|+..|-+|++.-
T Consensus       296 lr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfem  375 (401)
T KOG2838|consen  296 LRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEM  375 (401)
T ss_pred             ccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence             2345677764 33444 4567899999876432                            123567889999999999


Q ss_pred             hhhhhhhccccCCCCCc
Q psy17455        118 LSESESTTQTAVHYPDD  134 (149)
Q Consensus       118 L~~~~~~~~~~~~~~~~  134 (149)
                      |..+|+..+...+..+.
T Consensus       376 LaQa~e~Vir~acaadl  392 (401)
T KOG2838|consen  376 LAQACEDVIRKACAADL  392 (401)
T ss_pred             HHHHHHHHHHhhhhhhc
Confidence            99999988777665544

>KOG2716|consensus

Probab=97.86  E-value=4.1e-05  Score=58.79  Aligned_cols=89  Identities=21%  Similarity=0.399  Sum_probs=73.4

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCCh--hhHHHHHHH
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEVNIAP--DELNHFLKA  109 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~--~~~~~ll~~  109 (149)
                      -|||+.|...+.-|.-...+     |+.|+...   +.....-.+=+-+|.-|..+|+||=.|.+.++.  .++.+|+.=
T Consensus        10 nvGG~~F~Tsk~TLtk~dg~-----fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~E   84 (230)
T KOG2716|consen   10 NVGGTIFKTSKSTLTKFDGF-----FKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLRE   84 (230)
T ss_pred             ecCCeEEEeehhhhhhhhhH-----HHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence            68999999999999999999     99999763   222222334468999999999999998888755  567899999


Q ss_pred             HhhcCccchhhhhhhcccc
Q psy17455        110 AERLQIRGLSESESTTQTA  128 (149)
Q Consensus       110 A~~l~i~~L~~~~~~~~~~  128 (149)
                      |.+|.+.+|++.|...+..
T Consensus        85 A~fYlL~~Lv~~C~~~i~~  103 (230)
T KOG2716|consen   85 AEFYLLDGLVELCQSAIAR  103 (230)
T ss_pred             HHHhhHHHHHHHHHHHhhh
Confidence            9999999999999985444

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.77  E-value=3e-05  Score=51.14  Aligned_cols=84  Identities=18%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             EE-EeCCeEEEeeeeeec-ccCCCCChHHHHHhcCCC-----CCCCCeEEeCCCCHHHHHHHhhhhcC-CcccCC-hhhH
Q psy17455         33 LR-SAEGQYLKAHKVVLC-TCSPVFEIPLFEMLLSQH-----NDERPILIFSETKFNELKSMIDYMYK-GEVNIA-PDEL  103 (149)
Q Consensus        33 v~-~~~g~~~~aHk~vLa-a~S~~~~~~~f~~~f~~~-----~~~~~~i~l~~~~~~~~~~ll~f~Yt-g~~~i~-~~~~  103 (149)
                      |. -|||+.|.+-+..|. ....+     |..++...     ......+-+ +-+|..|+.||+|+-+ +.+..+ ...+
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~-----l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~   74 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSL-----LARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICL   74 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTST-----TTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-H
T ss_pred             CEEEECCEEEEEcHHHHhhCCCCh-----hhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhH
Confidence            45 799999999999998 44567     66666532     234556655 5799999999999999 677664 4567


Q ss_pred             HHHHHHHhhcCccch-hhhh
Q psy17455        104 NHFLKAAERLQIRGL-SESE  122 (149)
Q Consensus       104 ~~ll~~A~~l~i~~L-~~~~  122 (149)
                      ..++.-|++|+++.| .+.|
T Consensus        75 ~~l~~Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   75 EELLEEAEFYGLDELFIEDC   94 (94)
T ss_dssp             HHHHHHHHHHT-HHHHBHHC
T ss_pred             HHHHHHHHHcCCCccccCCC
Confidence            889999999999998 7766

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=97.40  E-value=0.0002  Score=48.28  Aligned_cols=75  Identities=17%  Similarity=0.275  Sum_probs=57.3

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcc---------------
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEV---------------   96 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~---------------   96 (149)
                      ..+|..|.+.+.+. ..|..     ++.++...   ......|.+++++...++.+++|++.-.-               
T Consensus         8 S~Dg~~f~v~~~~a-~~S~~-----i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD   81 (104)
T smart00512        8 SSDGEVFEVEREVA-RQSKT-----IKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWD   81 (104)
T ss_pred             eCCCCEEEecHHHH-HHHHH-----HHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHH
Confidence            66899999998866 56888     88887542   12225899999999999999999964211               


Q ss_pred             ----cCChhhHHHHHHHHhhcCc
Q psy17455         97 ----NIAPDELNHFLKAAERLQI  115 (149)
Q Consensus        97 ----~i~~~~~~~ll~~A~~l~i  115 (149)
                          .++.+.+.+|+.||++|+|
T Consensus        82 ~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       82 AEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCC
Confidence                1555678999999999986

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG3473|consensus

Probab=97.24  E-value=0.0019  Score=43.13  Aligned_cols=75  Identities=20%  Similarity=0.321  Sum_probs=59.0

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCC----CCCCCCeEEeCCCCHHHHHHHhhhh-----cCCc------ccCC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ----HNDERPILIFSETKFNELKSMIDYM-----YKGE------VNIA   99 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~ll~f~-----Ytg~------~~i~   99 (149)
                      ..+|.+|-.-|- +|.-|+-     .++||.+    .+....+|.+++++..+++.+.+|+     |++.      ..|+
T Consensus        23 S~Ddhefiikre-~AmtSgT-----iraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ip   96 (112)
T KOG3473|consen   23 SSDDHEFIIKRE-HAMTSGT-----IRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIP   96 (112)
T ss_pred             cCCCcEEEEeeh-hhhhhhH-----HHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCC
Confidence            346666665554 4566888     9999974    4567789999999999999999998     5554      4678


Q ss_pred             hhhHHHHHHHHhhcCc
Q psy17455        100 PDELNHFLKAAERLQI  115 (149)
Q Consensus       100 ~~~~~~ll~~A~~l~i  115 (149)
                      ++.+.+||.+|++|.+
T Consensus        97 pemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   97 PEMALELLMAANYLEC  112 (112)
T ss_pred             HHHHHHHHHHhhhhcC
Confidence            8999999999999863

>KOG0511|consensus

Probab=97.17  E-value=8.3e-05  Score=60.69  Aligned_cols=88  Identities=17%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             ceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHHH
Q psy17455         31 VDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLK  108 (149)
Q Consensus        31 ~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~  108 (149)
                      .|++  ...|+.|.|||..|+++|.+     |..-+.+.....++|.-..+-+..|..+++|+|-..-.+-+++...++.
T Consensus       150 ~di~f~~q~g~~f~ahkfll~arSs~-----~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynalls  224 (516)
T KOG0511|consen  150 HDIDFLQQEGANFDAHKFLLEARSSN-----YFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLS  224 (516)
T ss_pred             cchHHHhhccccccHHHHHHHhhhcc-----cCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHh
Confidence            5777  56788899999999999998     7655544455666776677889999999999998866666777788999


Q ss_pred             HHhhcCccchhhhhh
Q psy17455        109 AAERLQIRGLSESES  123 (149)
Q Consensus       109 ~A~~l~i~~L~~~~~  123 (149)
                      +..+|++..|....+
T Consensus       225 i~~kF~~e~l~~~~~  239 (516)
T KOG0511|consen  225 IEVKFSKEKLSLEIS  239 (516)
T ss_pred             hhhhccHHHhHHHHh
Confidence            999998887765433

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=96.81  E-value=0.00015  Score=57.97  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=74.7

Q ss_pred             eEEEeeeeeecccCCCCChHHHHHhcCC---CCCCCCeEEeC-CCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcC
Q psy17455         39 QYLKAHKVVLCTCSPVFEIPLFEMLLSQ---HNDERPILIFS-ETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQ  114 (149)
Q Consensus        39 ~~~~aHk~vLaa~S~~~~~~~f~~~f~~---~~~~~~~i~l~-~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~  114 (149)
                      +.|.|.+-+|-..=.|     |+.++..   ......+|.|. +.+-.+|+-+++|+......+++.|+..++.-|++|+
T Consensus        14 rdF~C~~~lL~~~M~Y-----F~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~   88 (317)
T PF11822_consen   14 RDFTCPRDLLVSEMRY-----FAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQ   88 (317)
T ss_pred             eeeeccHHHHHHhhHH-----HHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhc
Confidence            5799999999999999     9999854   44555667777 7889999999999999989999999999999999999


Q ss_pred             ccchhhhhhhccccC
Q psy17455        115 IRGLSESESTTQTAV  129 (149)
Q Consensus       115 i~~L~~~~~~~~~~~  129 (149)
                      |+.|++.|-.+...+
T Consensus        89 M~~Lve~cl~y~~~~  103 (317)
T PF11822_consen   89 MESLVEECLQYCHDH  103 (317)
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999887766543

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>KOG0511|consensus

Probab=96.64  E-value=0.00031  Score=57.44  Aligned_cols=84  Identities=20%  Similarity=0.214  Sum_probs=64.4

Q ss_pred             eEEEeeeeeecccCCCCChHHHHHhcCC--C----CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhh
Q psy17455         39 QYLKAHKVVLCTCSPVFEIPLFEMLLSQ--H----NDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAER  112 (149)
Q Consensus        39 ~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~----~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~  112 (149)
                      .++|||+++++. ++|     |+.||.+  .    ....+...++.....+.+.+++|+|+.+..|.++-+.+++..|++
T Consensus       301 ~RyP~hla~i~R-~ey-----fk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~  374 (516)
T KOG0511|consen  301 DRYPAHLARILR-VEY-----FKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADK  374 (516)
T ss_pred             ccccHHHHHHHH-HHH-----HHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhH
Confidence            459999999875 678     9999875  1    233445667788899999999999999999999999999999988


Q ss_pred             cCcc--c-hhhhhhhcccc
Q psy17455        113 LQIR--G-LSESESTTQTA  128 (149)
Q Consensus       113 l~i~--~-L~~~~~~~~~~  128 (149)
                      +.+.  + |+.+.+..+++
T Consensus       375 lal~~dr~Lkt~as~~itq  393 (516)
T KOG0511|consen  375 LALADDRLLKTAASAEITQ  393 (516)
T ss_pred             hhhhhhhhhhhhhhHHHHH
Confidence            8664  2 45555444444

>KOG1724|consensus

Probab=96.44  E-value=0.0021  Score=46.91  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=63.2

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCC--CeEEeCCCCHHHHHHHhhhhcCCccc---------------
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDER--PILIFSETKFNELKSMIDYMYKGEVN---------------   97 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~--~~i~l~~~~~~~~~~ll~f~Ytg~~~---------------   97 (149)
                      ..+|+.|.+-..+.. .|..     +..++.......  ..|.++.|....|..+++|++.-+-.               
T Consensus        11 SsDG~~f~ve~~~a~-~s~~-----i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~   84 (162)
T KOG1724|consen   11 SSDGEIFEVEEEVAR-QSQT-----ISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETD   84 (162)
T ss_pred             ccCCceeehhHHHHH-HhHH-----HHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCC
Confidence            557777777665543 3554     666664322222  58999999999999999999873321               


Q ss_pred             ----------CChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         98 ----------IAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        98 ----------i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                                +...++.+++.||.+|+|++|.++|....-.
T Consensus        85 i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~  125 (162)
T KOG1724|consen   85 IPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVAN  125 (162)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence                      2334688999999999999999988765544

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=96.42  E-value=0.0037  Score=38.24  Aligned_cols=52  Identities=19%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhc
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMY   92 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Y   92 (149)
                      ..||+.|.+.+.+.. .|..     ++.++.........|.+++++...++.+++|++
T Consensus         7 SsDg~~f~V~~~~a~-~S~~-----i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~   58 (62)
T PF03931_consen    7 SSDGQEFEVSREAAK-QSKT-----IKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE   58 (62)
T ss_dssp             ETTSEEEEEEHHHHT-TSHH-----HHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred             cCCCCEEEeeHHHHH-HhHH-----HHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence            568999999887665 6888     999886533333389999999999999999996

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG1987|consensus

Probab=96.29  E-value=0.0024  Score=50.30  Aligned_cols=87  Identities=21%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             CCeEEEeeeeeecccCCCCChHHHHHhcCCC--CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHH---HHHHHHh
Q psy17455         37 EGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELN---HFLKAAE  111 (149)
Q Consensus        37 ~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~--~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~---~ll~~A~  111 (149)
                      .+..+.+|+++++++++.     |+.++...  ......+.+.+.++..++.+..|.|+..-....+...   .++.+|.
T Consensus       108 ~~g~~~~~~~~~~a~~~V-----~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f  182 (297)
T KOG1987|consen  108 SNGFLVAHKLVLVARSEV-----FEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAF  182 (297)
T ss_pred             cCcEEEcCceEEEeeecc-----eeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhcc
Confidence            356699999999999999     88877542  2333444788899999999999999976554444443   7788889


Q ss_pred             hcCccchhhhhhhcccc
Q psy17455        112 RLQIRGLSESESTTQTA  128 (149)
Q Consensus       112 ~l~i~~L~~~~~~~~~~  128 (149)
                      +++.+.|+..|......
T Consensus       183 ~~~~~~lk~~~~~~l~~  199 (297)
T KOG1987|consen  183 KYKNRHLKLACMPVLLS  199 (297)
T ss_pred             ccccHHHHHHHHHHHHH
Confidence            99999999988865543

>KOG2714|consensus

Probab=95.76  E-value=0.031  Score=46.48  Aligned_cols=86  Identities=15%  Similarity=0.169  Sum_probs=64.6

Q ss_pred             cceEE--EeCCeEEEeeeeeecccC--CCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhh
Q psy17455         30 LVDLR--SAEGQYLKAHKVVLCTCS--PVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEVNIAPDE  102 (149)
Q Consensus        30 ~~Dv~--~~~g~~~~aHk~vLaa~S--~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~  102 (149)
                      -.|++  -|||+.|..-+--|+...  .+     |.+++.+.   .....-..+=+-+|+.|..+|+|+-||++.++.-.
T Consensus         9 ~~~~V~lNVGGriF~Ts~qTL~~~~~DSf-----fsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~   83 (465)
T KOG2714|consen    9 SGDRVKLNVGGRIFETSAQTLTWIPRDSF-----FSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVF   83 (465)
T ss_pred             CCceEEEecCceEEecchhhhhcCCcchH-----HHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCc
Confidence            34677  799999998888888776  56     78888642   22222334446789999999999999999996554


Q ss_pred             HHHHH-HHHhhcCccchhh
Q psy17455        103 LNHFL-KAAERLQIRGLSE  120 (149)
Q Consensus       103 ~~~ll-~~A~~l~i~~L~~  120 (149)
                      ...++ .=|.+|++..|.+
T Consensus        84 ~~~llhdEA~fYGl~~llr  102 (465)
T KOG2714|consen   84 PERLLHDEAMFYGLTPLLR  102 (465)
T ss_pred             hhhhhhhhhhhcCcHHHHH
Confidence            44444 4899999999987

>KOG1665|consensus

Probab=95.15  E-value=0.069  Score=41.19  Aligned_cols=88  Identities=13%  Similarity=0.199  Sum_probs=63.0

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC----CCCCCeEEeCCCCHHHHHHHhhhhcCCcccC-ChhhHHHHHHH
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH----NDERPILIFSETKFNELKSMIDYMYKGEVNI-APDELNHFLKA  109 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~----~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i-~~~~~~~ll~~  109 (149)
                      -++|+.|-.-+--|..+-|=  .| +..||.+.    +....--.+-+-+|.-|+.+|.|+-.|++.. +.-++..+++.
T Consensus        14 nigGk~f~TTidTlv~rEPD--SM-La~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee   90 (302)
T KOG1665|consen   14 NIGGKKFCTTIDTLVIREPD--SM-LAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE   90 (302)
T ss_pred             ecCCeEEEEeehhhcccCch--HH-HHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence            67888887666666655441  11 56777641    2222233444678999999999999998754 45578999999


Q ss_pred             HhhcCccchhhhhhhc
Q psy17455        110 AERLQIRGLSESESTT  125 (149)
Q Consensus       110 A~~l~i~~L~~~~~~~  125 (149)
                      |++|+|-+|++..+..
T Consensus        91 Arff~i~sL~~hle~~  106 (302)
T KOG1665|consen   91 ARFFQILSLKDHLEDS  106 (302)
T ss_pred             hhHHhhHhHHhHHhhh
Confidence            9999999999987763

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.45  E-value=0.041  Score=38.74  Aligned_cols=90  Identities=13%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCccc-----------------
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVN-----------------   97 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~-----------------   97 (149)
                      ..+|+.|.+.+. +|-+|-.     .+.++.........+..+++...+|..+++|+-..+-.                 
T Consensus         8 s~dge~F~vd~~-iAerSiL-----ikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D   81 (158)
T COG5201           8 SIDGEIFRVDEN-IAERSIL-----IKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSD   81 (158)
T ss_pred             ecCCcEEEehHH-HHHHHHH-----HHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCcc
Confidence            567777877664 4556666     88877654344445778899999999999999543211                 


Q ss_pred             --------CChhhHHHHHHHHhhcCccchhhhhhhccccCC
Q psy17455         98 --------IAPDELNHFLKAAERLQIRGLSESESTTQTAVH  130 (149)
Q Consensus        98 --------i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~  130 (149)
                              +..+.+.++..+|++|.++.|.++|.......+
T Consensus        82 ~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi  122 (158)
T COG5201          82 FWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI  122 (158)
T ss_pred             HHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence                    122346678889999999999999886655433

>KOG2715|consensus

Probab=90.79  E-value=0.52  Score=34.79  Aligned_cols=86  Identities=14%  Similarity=0.113  Sum_probs=64.7

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCC------CCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHHH
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHN------DERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLK  108 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~------~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~  108 (149)
                      -|||..|..-|.-|+.-+..     |-.-|.+.+      ....--.+-+-+|.-|..+|+|+-.|++.++.-.-..++.
T Consensus        26 NVGGt~f~TtktTl~rdp~s-----Fl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~  100 (210)
T KOG2715|consen   26 NVGGTVFLTTKTTLPRDPKS-----FLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE  100 (210)
T ss_pred             ecCCEEEEeeeeccccCcHH-----HHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence            78999999999999999877     655554322      1112233446788999999999999999988744455899


Q ss_pred             HHhhcCccchhhhhhhc
Q psy17455        109 AAERLQIRGLSESESTT  125 (149)
Q Consensus       109 ~A~~l~i~~L~~~~~~~  125 (149)
                      -|++|.++.|..+..+.
T Consensus       101 EAefyn~~~li~likd~  117 (210)
T KOG2715|consen  101 EAEFYNDPSLIQLIKDR  117 (210)
T ss_pred             hhhccCChHHHHHHHHH
Confidence            99999999888765543

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=89.12  E-value=0.27  Score=31.30  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=25.5

Q ss_pred             CChhhHHHHHHHHhhcCccchhhhhhhccccCC
Q psy17455         98 IAPDELNHFLKAAERLQIRGLSESESTTQTAVH  130 (149)
Q Consensus        98 i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~  130 (149)
                      ++.+.+.+|+.||.+|+|++|.+.|...+...+
T Consensus        11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i   43 (78)
T PF01466_consen   11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMI   43 (78)
T ss_dssp             S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence            466789999999999999999999886554433

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>KOG3840|consensus

Probab=85.11  E-value=3  Score=33.81  Aligned_cols=80  Identities=11%  Similarity=0.197  Sum_probs=56.2

Q ss_pred             EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC-----CCCCCCeEEeC-CCCHHHHHHHhhhhcCCcccCChh-hHH
Q psy17455         33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ-----HNDERPILIFS-ETKFNELKSMIDYMYKGEVNIAPD-ELN  104 (149)
Q Consensus        33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~-----~~~~~~~i~l~-~~~~~~~~~ll~f~Ytg~~~i~~~-~~~  104 (149)
                      ++ .+++..|-.-+.+|.+.-.-   | ...||.+     ......+..+- +++..+|+++|+|.-+|.+.-++. .+.
T Consensus        98 ~t~lvd~~rf~v~q~llt~~p~T---m-lg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvp  173 (438)
T KOG3840|consen   98 VCLLVDQTRFLVSQRLLTSKPDT---M-LGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVS  173 (438)
T ss_pred             eEEEeeeEEEEeeeeeecCCcch---h-hhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchH
Confidence            44 77888888888888775332   1 3444543     23444555554 799999999999999998865443 577


Q ss_pred             HHHHHHhhcCcc
Q psy17455        105 HFLKAAERLQIR  116 (149)
Q Consensus       105 ~ll~~A~~l~i~  116 (149)
                      +|-++.++|.|+
T Consensus       174 ELrEACDYLlip  185 (438)
T KOG3840|consen  174 ELREACDYLLVP  185 (438)
T ss_pred             HHHhhcceEEee
Confidence            788888887664

>KOG2723|consensus

Probab=84.29  E-value=6.5  Score=30.19  Aligned_cols=95  Identities=13%  Similarity=0.186  Sum_probs=59.1

Q ss_pred             CCcceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCC----CCCCeEEeCCCCHHHHHHHhhhhcCCcccCCh-
Q psy17455         28 ETLVDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHN----DERPILIFSETKFNELKSMIDYMYKGEVNIAP-  100 (149)
Q Consensus        28 ~~~~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~----~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~-  100 (149)
                      ..+.|++  -+||..+.. +  |++-+.| .......||++..    ......-| +-+-..|+.||+|+-|-.+.++. 
T Consensus         5 ~~~~~~v~lnvGG~~ytt-~--l~tL~~~-~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~   79 (221)
T KOG2723|consen    5 SEYPDVVELNVGGAIYTT-R--LGTLTKF-PDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPED   79 (221)
T ss_pred             cccCCceeeccCCeEEEe-e--ccceeec-hHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchh
Confidence            4567888  566664443 2  3332332 3334677776411    11111222 34567899999999996666666 


Q ss_pred             -hhHHHHHHHHhhcCccchhhhhhhccc
Q psy17455        101 -DELNHFLKAAERLQIRGLSESESTTQT  127 (149)
Q Consensus       101 -~~~~~ll~~A~~l~i~~L~~~~~~~~~  127 (149)
                       .++..+..-|++|+++.+.........
T Consensus        80 f~e~~~L~rEA~f~~l~~~~~~l~~~~~  107 (221)
T KOG2723|consen   80 FAEVERLVREAEFFQLEAPVTYLLNSGQ  107 (221)
T ss_pred             hhhHHHHHHHHHHHccccHHHHHhcccc
Confidence             578899999999999987775544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
2z8h_A	138	Structure Of Mouse Bach1 Btb Domain Length = 138		4e-04
2ihc_A	124	Crystal Structure Of The Bric-A-Brac (Btb) Domain O		8e-04

>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 21  VNSLLKKETLVDLRS-AEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSET 79
           +N   KK+ L D+    EGQ  +AH+ VL  CS  F       ++ Q + E  + +  E 
Sbjct: 27  LNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH----SRIVGQTDAELTVTLPEEV 82
Query: 80  KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSES 121
                + +I + Y  ++ ++ D ++   +  E L +  + ES
Sbjct: 83  TVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124

>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human Bach1 Length = 124

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 26  KKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNEL 84
           KK+ L D+    EGQ  +AH+ VL  CS  F       ++ Q + E  I +  E      
Sbjct: 25  KKDVLCDVTIFVEGQRFRAHRSVLAACSSYFH----SRIVGQADGELNITLPEEVTVKGF 80
Query: 85  KSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSES 121
           + +I + Y  ++ ++ + ++   K  E L +  + ES
Sbjct: 81  EPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	7e-13
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-12
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	8e-12
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	1e-11
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	3e-11
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	3e-11
2vpk_A	116	Myoneurin; transcription regulation, transcription	4e-11
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	4e-11
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	7e-11
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	1e-10
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	2e-10
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	2e-10
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	3e-10
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	4e-10
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	1e-09
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	2e-09
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	2e-09
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	3e-09
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	3e-09
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	5e-09

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 59.9 bits (146), Expect = 7e-13
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 23  SLLKKETLVD-----LRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS 77
           S+   E + D           + + AHK VL   S VF      M      + +  +   
Sbjct: 1   SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFY----AMFYGDLAEVKSEIHIP 56

Query: 78  ETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
           + +      ++ YMY  E+++  D +   L AA++  +  L
Sbjct: 57  DVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPAL 97

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 59.5 bits (145), Expect = 2e-12
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSE 78
             L +     D      GQ  +AHK +L   SPVF      M   +   + +  + I ++
Sbjct: 17  GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS----AMFEHEMEESKKNRVEI-ND 71

Query: 79  TKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
            +    K M+ ++Y G+        +  L AA++  +  L
Sbjct: 72  VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 58.8 bits (143), Expect = 8e-12
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSE 78
             L +     D      GQ  +AHK +L   SPVF      M   +   + +  + I ++
Sbjct: 26  GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS----AMFEHEMEESKKNRVEI-ND 80

Query: 79  TKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
            +    K M+ ++Y G+        +  L AA++  +  L
Sbjct: 81  VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 120

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N   +   L D     +G + KAHK VL  CS       F+ML     D   + I +   
Sbjct: 19  NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSE-----YFKMLFVDQKDVVHLDISNAAG 73

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
             ++   +++MY  +++++P+ ++  L  A  LQ++ +  
Sbjct: 74  LGQV---LEFMYTAKLSLSPENVDDVLAVATFLQMQDIIT 110

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N   +K    D      G   KAH  VL  CS  F+     +          +       
Sbjct: 16  NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ----SLYGDGSGGSVVLPAGFAEI 71

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
           F  L   +D+ Y G + +     +  L AA  L++
Sbjct: 72  FGLL---LDFFYTGHLALTSGNRDQVLLAARELRV 103

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 56.5 bits (137), Expect = 3e-11
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N   +K    D      G   KAH  VL  CS  F+     +          +       
Sbjct: 17  NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ----RIYGDGTGGSVVLPAGFAEI 72

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
           F  L   +D+ Y G + +     +  L AA+ L++
Sbjct: 73  FGLL---LDFFYTGHLALTSGNRDQVLLAAKELRV 104

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 55.7 bits (135), Expect = 4e-11
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N   +   L D          KAH+ VL + S       F  +    ++    L  S+ K
Sbjct: 14  NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSE-----YFGAIYRSTSENNVFLDQSQVK 68

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
            +  + +++++Y G +N+    +    +AA+ L++
Sbjct: 69  ADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKV 103

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 55.7 bits (135), Expect = 4e-11
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 4   GSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
           G  +    ++   ++   N +    TL D+    + Q   AH+ VL   S      +FE+
Sbjct: 2   GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSK-----MFEI 56

Query: 63  LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
           L  +++    +   S   F ++   ++Y Y   +    ++L+  L AAE L+I  L E
Sbjct: 57  LFHRNSQHYTLDFLSPKTFQQI---LEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 55.3 bits (134), Expect = 7e-11
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N   KK+ L D+    E +  +AH+ VL  CS  F     + L+ Q  ++  + +  E  
Sbjct: 24  NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW----QALVGQTKNDLVVSLPEEVT 79

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
                 ++ + Y  ++ ++ + +   ++ AE L++
Sbjct: 80  ARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRM 114

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 3   EGSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFE 61
                +    +   ++  +N   KK+ L D+    EGQ  +AH+ VL  CS  F      
Sbjct: 2   MSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFH----S 57

Query: 62  MLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
            ++ Q + E  I +  E      + +I + Y  ++ ++ + ++   K  E L +  + E
Sbjct: 58  RIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEE 116

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N   KK+ L D+    EGQ  +AH+ VL  CS  F                     +   
Sbjct: 28  NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH-SRIVGQTDAELTVTLPEEVTVKG 86

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSES 121
           F  L   I + Y  ++ ++ D ++   +  E L +  + ES
Sbjct: 87  FEPL---IQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 15/127 (11%)

Query: 5   SQEFCLRANQETMISLVNSLLKKETLVD----LRSAEGQYLKAHKVVLCTCSPVFEIPLF 60
           +++F   ++   +    N   ++    D       A G+  +AH+ VL   +  F     
Sbjct: 7   AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFT---- 62

Query: 61  EMLLSQHNDER-------PILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERL 113
            +L  Q ++ R               + + ++++I+YMY G + ++   ++  L+ A+R 
Sbjct: 63  PLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRF 122

Query: 114 QIRGLSE 120
            +  L E
Sbjct: 123 LLIRLKE 129

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLF-EMLLSQHNDERPILIFSET 79
             L +     D      GQ  +AHK +L   SPVF      EM   + + +  + I ++ 
Sbjct: 166 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM---EESKKNRVEI-NDV 221

Query: 80  KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
           +    K M+ ++Y G+        +  L AA++  +  L
Sbjct: 222 EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 53.0 bits (128), Expect = 4e-10
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIF-SET 79
           N    +    D+    +G   KAH+ VL   S  F      +  +  +    +       
Sbjct: 25  NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRD----LFNNSRSAVVELPAAVQPQ 80

Query: 80  KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
            F ++   + + Y G +++   + +  +  A  LQI+ + E
Sbjct: 81  SFQQI---LSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIME 118

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 4   GSQEFCLRANQ--ETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLF 60
           GS +  ++  +    ++  +N L  ++ L D+      +  +AHK VL  CS +F     
Sbjct: 1   GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT 60

Query: 61  EMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
           + L    +        +   FN L   +D+MY   +N+    +   +  A  LQ+
Sbjct: 61  DQLKRNLSVINLDPEINPEGFNIL---LDFMYTSRLNLREGNIMAVMATAMYLQM 112

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 22/110 (20%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           +S  ++    D     +G+ +   K +L   SP         L              +  
Sbjct: 23  SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR----TKLNYN-------PPKDDGS 71

Query: 81  FNE----------LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
             +          ++ ++DY++ G++ +  D +   ++AA+ L +  L  
Sbjct: 72  TYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 121

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N         D+    E +  +AHK +L   S       F  L S       +       
Sbjct: 23  NEQRGHGLFCDVTVIVEDRKFRAHKNILSASS-----TYFHQLFSVAGQVVELSFIRAEI 77

Query: 81  FNELKSMIDYMYKGE-VNIAPDELNHFLKAAERLQIRGLSE 120
           F E+   ++Y+Y  + V +  D L+  +K+ + L ++ ++ 
Sbjct: 78  FAEI---LNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 36  AEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGE 95
              Q   AH +VL   S        +  L +               +    +++++Y   
Sbjct: 37  VGSQEFPAHSLVLAGVSQQLG-RRGQWALGEGISP-----------STFAQLLNFVYGES 84

Query: 96  VNIAPDELNHFLKAAERLQIRGLSE 120
           V + P EL    +AA  L ++ L E
Sbjct: 85  VELQPGELRPLQEAARALGVQSLEE 109

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 16/117 (13%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 5   SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEML 63
           S       +   ++  ++S  ++    D     +G+ +   K +L   SP          
Sbjct: 22  SMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR-TKLNYN 80

Query: 64  LSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
             + +     +         ++ ++DY++ G++ +  D +   ++AA+ L +  L  
Sbjct: 81  PPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 137

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 50.3 bits (121), Expect = 5e-09
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILI-FSET 79
           N    +  L D+    EG+    H+ VL  CS  F+    ++  S    ++  +      
Sbjct: 17  NEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFK----KLFTSGAVVDQQNVYEIDFV 72

Query: 80  KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
               L +++D+ Y   + ++   +   L AA  L+I  +S 
Sbjct: 73  SAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSH 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.95
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.95
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.95
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.95
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.95
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.95
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.95
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.95
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.94
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.94
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.94
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.94
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.94
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.94
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.93
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.93
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.93
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.93
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.91
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.9
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.52
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.37
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.28
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.17
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.71
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.69
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	98.63
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.39
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	98.29
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	97.6
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	96.36
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	96.33
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	95.78
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	95.7
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	95.27
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	87.61

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.95  E-value=7.6e-29  Score=174.93  Aligned_cols=124  Identities=19%  Similarity=0.339  Sum_probs=115.0

Q ss_pred             cceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC-CCCHHH
Q psy17455          6 QEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS-ETKFNE   83 (149)
Q Consensus         6 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~-~~~~~~   83 (149)
                      ..|..+.|++.+++.|++++.++.+|||+ .++|+.|+|||+|||++|+|     |+++|.+.......|.++ ++++++
T Consensus        12 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~~f~~~~~e~~~i~l~~~v~~~~   86 (138)
T 2z8h_A           12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSY-----FHSRIVGQTDAELTVTLPEEVTVKG   86 (138)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTTCCCTTEEEECCTTSCHHH
T ss_pred             eEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHH-----HHHHHhcCCCCCceEEeCCCCCHHH
Confidence            44566778999999999999999999999 99999999999999999999     999998765556789995 899999


Q ss_pred             HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCc
Q psy17455         84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDD  134 (149)
Q Consensus        84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~  134 (149)
                      |+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+.+...+.+.+
T Consensus        87 ~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn  137 (138)
T 2z8h_A           87 FEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDST  137 (138)
T ss_dssp             HHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred             HHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999999999999999999999887765

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.95  E-value=1e-28  Score=171.29  Aligned_cols=117  Identities=18%  Similarity=0.313  Sum_probs=109.3

Q ss_pred             CCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCC-CCH
Q psy17455          4 GSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSE-TKF   81 (149)
Q Consensus         4 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~-~~~   81 (149)
                      +...+..+.|+..+++.++++++++.+|||+ .++|+.|+|||.||+++|+|     |+++|.........|.+++ +++
T Consensus         6 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~~f~~~~~e~~~i~l~~~~~~   80 (125)
T 3ohu_A            6 PMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEY-----FWQALVGQTKNDLVVSLPEEVTA   80 (125)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHH-----HHHHHTTCCCSSCEEECCTTCCH
T ss_pred             cceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHH-----HHHHhcCCCCCCcEEEeCCCCCH
Confidence            4456677788999999999999999999999 99999999999999999999     9999987666688999998 999


Q ss_pred             HHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhc
Q psy17455         82 NELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTT  125 (149)
Q Consensus        82 ~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~  125 (149)
                      ++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+.
T Consensus        81 ~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~  124 (125)
T 3ohu_A           81 RGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSF  124 (125)
T ss_dssp             HHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred             HHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999865

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=169.99  Aligned_cols=113  Identities=19%  Similarity=0.293  Sum_probs=104.7

Q ss_pred             eecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHH
Q psy17455          9 CLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSM   87 (149)
Q Consensus         9 ~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~l   87 (149)
                      ..+.|+..+++.+++++.++.+|||+ .++|+.|+|||.||+++|+|     |+++|....  ...|.++++++++|+.+
T Consensus         3 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~~f~~~~--~~~i~l~~~~~~~f~~l   75 (119)
T 3b84_A            3 SFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHF-----FQSLYGDGS--GGSVVLPAGFAEIFGLL   75 (119)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTTTT--CCCEEECGGGHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHH-----HHHHHCCCC--CCeEEeCCCCHHHHHHH
Confidence            34567999999999999999999999 99999999999999999999     999998644  67899999999999999


Q ss_pred             hhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        88 l~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      |+|+|||++.++.+++.+++.+|++|++++|++.|++.+.+
T Consensus        76 l~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~  116 (119)
T 3b84_A           76 LDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPK  116 (119)
T ss_dssp             HHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987764

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.95  E-value=3.8e-28  Score=168.81  Aligned_cols=121  Identities=17%  Similarity=0.334  Sum_probs=109.9

Q ss_pred             CCCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCC-CCCeEEe-CCC
Q psy17455          3 EGSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHND-ERPILIF-SET   79 (149)
Q Consensus         3 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~-~~~~i~l-~~~   79 (149)
                      +++..+..+.|++.+++.+++++.++.+|||+ .++|+.|+|||.||+++|+|     |++||..... ....|.+ +++
T Consensus         2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~-----F~~~f~~~~~e~~~~i~l~~~~   76 (127)
T 1r29_A            2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGL-----FYSIFTDQLKRNLSVINLDPEI   76 (127)
T ss_dssp             ---CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTSTTTTTCSEEECCTTS
T ss_pred             CCCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHH-----HHHHhcCCccCCCCEEEeCCCC
Confidence            34566778888999999999999999999999 99999999999999999999     9999986322 6789999 899


Q ss_pred             CHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         80 KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        80 ~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      ++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|+..+..
T Consensus        77 ~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~  125 (127)
T 1r29_A           77 NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  125 (127)
T ss_dssp             CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999987654

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.95  E-value=1.8e-28  Score=172.59  Aligned_cols=119  Identities=18%  Similarity=0.271  Sum_probs=102.2

Q ss_pred             ecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHh
Q psy17455         10 LRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMI   88 (149)
Q Consensus        10 ~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll   88 (149)
                      .+.|+..+++.|+++++++.+|||+ .++|+.|+|||.||+++|+|     |++||....  ...|.++++++++|+.+|
T Consensus         5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~mf~~~~--~~~i~l~~~~~~~f~~lL   77 (135)
T 2yy9_A            5 SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHF-----FQRIYGDGT--GGSVVLPAGFAEIFGLLL   77 (135)
T ss_dssp             --CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHH-----HHHTCC------CCEEECGGGHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHH-----HHHHHcCCC--CCeEEeCCCCHHHHHHHH
Confidence            3567999999999999999999999 99999999999999999999     999998643  568999999999999999


Q ss_pred             hhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCch
Q psy17455         89 DYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDD  135 (149)
Q Consensus        89 ~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~  135 (149)
                      +|+|||++.++.+++.+++.+|++|+++.|++.|...+...+.....
T Consensus        78 ~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~  124 (135)
T 2yy9_A           78 DFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ  124 (135)
T ss_dssp             HHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence            99999999999999999999999999999999999998887654443

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.95  E-value=1.5e-28  Score=170.53  Aligned_cols=118  Identities=20%  Similarity=0.352  Sum_probs=107.6

Q ss_pred             CCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC-CCCH
Q psy17455          4 GSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS-ETKF   81 (149)
Q Consensus         4 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~-~~~~   81 (149)
                      +...|..+.|++.+++.+++++.++.+|||+ .++|+.|+|||.|||++|+|     |++||.+.......|.++ ++++
T Consensus         3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~y-----F~~mf~~~~~e~~~i~l~~~v~~   77 (124)
T 2ihc_A            3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSY-----FHSRIVGQADGELNITLPEEVTV   77 (124)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHH-----HHHHHTTC---CEEEECCTTSCH
T ss_pred             ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHH-----HHHHHcCCCCCCceEeecCCcCH
Confidence            3456777888999999999999999999999 99999999999999999999     999998765556789995 9999


Q ss_pred             HHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcc
Q psy17455         82 NELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQ  126 (149)
Q Consensus        82 ~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~  126 (149)
                      ++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+.+
T Consensus        78 ~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l  122 (124)
T 2ihc_A           78 KGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFL  122 (124)
T ss_dssp             HHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred             HHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999865

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.95  E-value=3.7e-28  Score=167.78  Aligned_cols=116  Identities=21%  Similarity=0.309  Sum_probs=108.1

Q ss_pred             CcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHH
Q psy17455          5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNE   83 (149)
Q Consensus         5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~   83 (149)
                      ...+..+.|++.+.+.++++++++.+|||+ .++|+.|+|||.||+++|+|     |+++|.+   ....|.++++++++
T Consensus         3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~~f~~---~~~~i~l~~~~~~~   74 (121)
T 1buo_A            3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKM-----FEILFHR---NSQHYTLDFLSPKT   74 (121)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHH-----HHHHTTS---CCSEEEECSSCHHH
T ss_pred             ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHH-----HHHHHcC---CCcEEEeCCCCHHH
Confidence            356777889999999999999999999999 99999999999999999999     9999975   35689999999999


Q ss_pred             HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      |+.+|+|+|||++.++.+++.+++.+|++|++++|++.|++.+..
T Consensus        75 f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~  119 (121)
T 1buo_A           75 FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987643

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.95  E-value=4.9e-28  Score=166.58  Aligned_cols=114  Identities=20%  Similarity=0.348  Sum_probs=104.6

Q ss_pred             eeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHH
Q psy17455          8 FCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNEL   84 (149)
Q Consensus         8 ~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~   84 (149)
                      +..+.|++.+++.++++++++.+|||+ .++|+.|+|||.||+++|+|     |+++|.+  .+.....|.++++++++|
T Consensus         3 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~-----F~~~f~~~~~e~~~~~i~l~~~~~~~f   77 (120)
T 2if5_A            3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY-----FKKLFTSGAVVDQQNVYEIDFVSAEAL   77 (120)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHC-----CCSEEECCSSCHHHH
T ss_pred             cCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHH-----HHHHhcCCccccCCceEEeCCCCHHHH
Confidence            345678999999999999999999999 99999999999999999999     9999975  456678999999999999


Q ss_pred             HHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcc
Q psy17455         85 KSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQ  126 (149)
Q Consensus        85 ~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~  126 (149)
                      +.+|+|+|||++.++.+++.+++.+|++|++++|++.|++.+
T Consensus        78 ~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           78 TALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998764

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.94  E-value=6.7e-28  Score=171.54  Aligned_cols=118  Identities=14%  Similarity=0.287  Sum_probs=106.4

Q ss_pred             CCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC----CCCCCeEEeCC
Q psy17455          4 GSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH----NDERPILIFSE   78 (149)
Q Consensus         4 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~----~~~~~~i~l~~   78 (149)
                      .+..+..+.|+..+++.+++++.++.+|||+ .++|+.|+|||+|||++|+|     |++||.+.    +.....|.+++
T Consensus        21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~mf~~~~~e~e~~~~~I~l~~   95 (144)
T 2ppi_A           21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPY-----IRTKLNYNPPKDDGSTYKIELEG   95 (144)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHHCC-----CCCEEECCS
T ss_pred             eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHH-----HHHHHcCCCccccCCCcEEEeCC
Confidence            4466778888999999999999999999999 99999999999999999999     99999642    35678999999


Q ss_pred             CCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcc
Q psy17455         79 TKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQ  126 (149)
Q Consensus        79 ~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~  126 (149)
                      +++++|+.+|+|+|||++.++.+++.+++.+|++|++++|++.|++.+
T Consensus        96 v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A           96 ISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             SCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998764

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.94  E-value=7.3e-28  Score=164.93  Aligned_cols=110  Identities=16%  Similarity=0.284  Sum_probs=102.9

Q ss_pred             cccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC--CCCHHHHHHH
Q psy17455         11 RANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS--ETKFNELKSM   87 (149)
Q Consensus        11 ~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~--~~~~~~~~~l   87 (149)
                      +.|+..+++.+++++.++.+|||+ .++|+.|+|||.||+++|+|     |++||.+.  ....|.++  ++++++|+.+
T Consensus         3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~y-----F~~~f~~~--~~~~i~l~~~~~~~~~f~~l   75 (116)
T 2vpk_A            3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEY-----FGAIYRST--SENNVFLDQSQVKADGFQKL   75 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTTC--CCSCEECCTTTCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHH-----HHHHHcCC--CCCeEEeecCCCCHHHHHHH
Confidence            467899999999999999999999 99999999999999999999     99999865  46677888  9999999999


Q ss_pred             hhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccc
Q psy17455         88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQT  127 (149)
Q Consensus        88 l~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~  127 (149)
                      |+|+|||++.++.+++.+++.+|++|++++|++.|++.+.
T Consensus        76 l~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           76 LEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             HHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999997653

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.94  E-value=5.3e-28  Score=168.67  Aligned_cols=117  Identities=16%  Similarity=0.301  Sum_probs=102.3

Q ss_pred             cceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC-CCCHHH
Q psy17455          6 QEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS-ETKFNE   83 (149)
Q Consensus         6 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~-~~~~~~   83 (149)
                      ..+..+.|+..+++.+++++.++.+|||+ .++|+.|+|||.||+++|+|     |+++|...  ...+|.++ ++++++
T Consensus         9 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~-----F~~~f~~~--~~~~i~l~~~~~~~~   81 (129)
T 3ga1_A            9 LQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSY-----FRDLFNNS--RSAVVELPAAVQPQS   81 (129)
T ss_dssp             EEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHH-----HHHHHHHC--CCSEEECCTTCCHHH
T ss_pred             EEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHH-----HHHHHcCC--CCCEEEECCCCCHHH
Confidence            34556677999999999999999999999 99999999999999999999     99999765  67799997 999999


Q ss_pred             HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccC
Q psy17455         84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAV  129 (149)
Q Consensus        84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~  129 (149)
                      |+.+|+|+|||++.++.+++.+++.+|++|++++|++.|.+.+...
T Consensus        82 f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~  127 (129)
T 3ga1_A           82 FQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV  127 (129)
T ss_dssp             HHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999887664

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.94  E-value=3e-28  Score=167.83  Aligned_cols=114  Identities=20%  Similarity=0.400  Sum_probs=104.3

Q ss_pred             cceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHH
Q psy17455          6 QEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNEL   84 (149)
Q Consensus         6 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~   84 (149)
                      ..+..+.|+..+++.++++++++.+|||+ .++|+.|+|||.||+++|+|     |++||.+   ...+|.++++++++|
T Consensus         3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~y-----F~~~f~~---~~~~i~l~~~~~~~f   74 (119)
T 2q81_A            3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEY-----FKMLFVD---QKDVVHLDISNAAGL   74 (119)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHH---CCSGGGGGGCCHHHH
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHH-----HHHHHcC---CCCEEEeCCCCHHHH
Confidence            34566788999999999999999999999 99999999999999999999     9999975   345788899999999


Q ss_pred             HHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccc
Q psy17455         85 KSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQT  127 (149)
Q Consensus        85 ~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~  127 (149)
                      +.+|+|+|||++.++.+++.+++.+|++|++++|++.|.+.+.
T Consensus        75 ~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           75 GQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             HHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999997653

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.94  E-value=4.1e-27  Score=161.75  Aligned_cols=111  Identities=16%  Similarity=0.279  Sum_probs=103.5

Q ss_pred             CCCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCH
Q psy17455          3 EGSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKF   81 (149)
Q Consensus         3 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~   81 (149)
                      ++...+..+.|+..+++.+++++.++.+|||+ .++|+.|+|||.|||++|+|     |+++|...   ...|.++++++
T Consensus         4 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~-----F~~~f~~~---~~~i~l~~~~~   75 (116)
T 3fkc_A            4 RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTY-----FHQLFSVA---GQVVELSFIRA   75 (116)
T ss_dssp             CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHH-----HHHHTTSC---CSEEEECSSCH
T ss_pred             CceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHH-----HHHHHcCC---CCEEEeCCCCH
Confidence            45667778888999999999999999999999 99999999999999999999     99999764   67899999999


Q ss_pred             HHHHHHhhhhcCCcc-cCChhhHHHHHHHHhhcCccchhhh
Q psy17455         82 NELKSMIDYMYKGEV-NIAPDELNHFLKAAERLQIRGLSES  121 (149)
Q Consensus        82 ~~~~~ll~f~Ytg~~-~i~~~~~~~ll~~A~~l~i~~L~~~  121 (149)
                      ++|+.+|+|+|||++ .++.+++.+++.+|++|++++|+++
T Consensus        76 ~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~l  116 (116)
T 3fkc_A           76 EIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL  116 (116)
T ss_dssp             HHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHTC
T ss_pred             HHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCcC
Confidence            999999999999999 7999999999999999999999863

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.94  E-value=2.5e-27  Score=182.09  Aligned_cols=137  Identities=12%  Similarity=0.200  Sum_probs=117.0

Q ss_pred             CcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC----CCCCCeEEeCCC
Q psy17455          5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH----NDERPILIFSET   79 (149)
Q Consensus         5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~----~~~~~~i~l~~~   79 (149)
                      +..+..+.|+..+++.+++++.++.+|||+ .++|+.|+|||.||+++|+|     |++||.+.    +.....|.++++
T Consensus         6 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~y-----F~~mf~~~~~~~e~~~~~i~l~~v   80 (256)
T 3hve_A            6 GSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPY-----IRTKLNYNPPKDDGSTYKIELEGI   80 (256)
T ss_dssp             ----CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHH-----HHHTC-----------CEEECSSC
T ss_pred             CCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHH-----HHHHhCCCCCcccCCCCeEEeCCC
Confidence            466788889999999999999999999999 99999999999999999999     99999752    456789999999


Q ss_pred             CHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455         80 KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ  146 (149)
Q Consensus        80 ~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (149)
                      ++++|+.+++|+|||++.++.+++.+++.+|++|+++.|++.|...+...+.++++......|...+
T Consensus        81 ~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~  147 (256)
T 3hve_A           81 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYC  147 (256)
T ss_dssp             CHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTT
T ss_pred             CHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999988777665443

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.93  E-value=1e-26  Score=180.87  Aligned_cols=137  Identities=18%  Similarity=0.233  Sum_probs=121.5

Q ss_pred             CcceeecccHHHHHHHHHHHHhCCCcceEE-EeC---CeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeC-
Q psy17455          5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAE---GQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFS-   77 (149)
Q Consensus         5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~---g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~-   77 (149)
                      ...|..+.|++.+++.+++++.++.+|||+ .++   |+.|+|||.||+++|+|     |++||.+  .+.....|.++ 
T Consensus         7 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~y-----F~~mf~~~~~e~~~~~i~l~~   81 (279)
T 3i3n_A            7 AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEY-----FTPLLSGQFSESRSGRVEMRK   81 (279)
T ss_dssp             EEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTT-----SGGGCCC--------EEECCC
T ss_pred             ccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHH-----HHHHhcCCCccccCCeEEecc
Confidence            466888899999999999999999999999 998   89999999999999999     9999976  45667899998 


Q ss_pred             -----CCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455         78 -----ETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ  146 (149)
Q Consensus        78 -----~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (149)
                           ++++++|+.+++|+|||++.++.+++.+++.+|++|+++.|++.|...+...+.++++......|...+
T Consensus        82 ~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~  155 (279)
T 3i3n_A           82 WSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYT  155 (279)
T ss_dssp             CSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTT
T ss_pred             ccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcC
Confidence                 899999999999999999999999999999999999999999999999999999999998877665443

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.93  E-value=2.5e-27  Score=167.27  Aligned_cols=129  Identities=17%  Similarity=0.263  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC--CCCCCeEEeCCCCHHHHHHHhhh
Q psy17455         14 QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSETKFNELKSMIDY   90 (149)
Q Consensus        14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~--~~~~~~i~l~~~~~~~~~~ll~f   90 (149)
                      ++.+.+.++++++++.+|||+ .++|+.|+|||.||+++|+|     |+++|.+.  +.....|.++++++++|+.+|+|
T Consensus         9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~-----F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~   83 (145)
T 4eoz_A            9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPV-----FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF   83 (145)
T ss_dssp             CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHH-----HHHHHcCCCcCCCCceEEecCCCHHHHHHHHHh
Confidence            577999999999999999999 99999999999999999999     99999753  34457999999999999999999


Q ss_pred             hcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCCC
Q psy17455         91 MYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQM  147 (149)
Q Consensus        91 ~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (149)
                      +|||++.++.+++.+++.+|++|++++|++.|...+...+.++++.+....|...+.
T Consensus        84 ~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~  140 (145)
T 4eoz_A           84 IYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSA  140 (145)
T ss_dssp             HHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC----------------------
T ss_pred             hccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            999999999999999999999999999999999999999999999998888776654

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.2e-26  Score=167.99  Aligned_cols=129  Identities=17%  Similarity=0.263  Sum_probs=119.5

Q ss_pred             cHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHHHHhh
Q psy17455         13 NQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELKSMID   89 (149)
Q Consensus        13 ~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~ll~   89 (149)
                      +++.+.+.++++++++.+|||+ .++|+.|+|||.||+++|+|     |+++|..  .+.....|.++++++++|+.+|+
T Consensus        17 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~-----F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~   91 (172)
T 3htm_A           17 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPV-----FSAMFEHEMEESKKNRVEINDVEPEVFKEMMC   91 (172)
T ss_dssp             CCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHSCCCGGGTTEEEECSSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHH-----HHHHHccCccccCCCeEEecCCCHHHHHHHHH
Confidence            3677999999999999999999 99999999999999999999     9999975  45567899999999999999999


Q ss_pred             hhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455         90 YMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ  146 (149)
Q Consensus        90 f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (149)
                      |+|||++.++.+++.+++.+|++|+++.|++.|...+...+.++++.+....|...+
T Consensus        92 ~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~  148 (172)
T 3htm_A           92 FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHS  148 (172)
T ss_dssp             HHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTT
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999998877766554

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.93  E-value=2.4e-26  Score=158.85  Aligned_cols=110  Identities=17%  Similarity=0.244  Sum_probs=96.7

Q ss_pred             CcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHH
Q psy17455          5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNE   83 (149)
Q Consensus         5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~   83 (149)
                      ......+.++..+++.++  |.++.||||+ .++|+.|+|||+|||++|+|     |++       ....|.++++++++
T Consensus         7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~-------~~~~i~l~~v~~~~   72 (119)
T 3m5b_A            7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQ-----LGR-------RGQWALGEGISPST   72 (119)
T ss_dssp             CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGG-----GCC-------CEEEECCSSCCHHH
T ss_pred             CCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHH-----Hhc-------CCCEEEeCCCCHHH
Confidence            344455567788888886  7789999999 99999999999999999999     753       34688999999999


Q ss_pred             HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      |+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++....
T Consensus        73 f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           73 FAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             HHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999987543

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.91  E-value=1.2e-25  Score=151.92  Aligned_cols=99  Identities=19%  Similarity=0.307  Sum_probs=89.7

Q ss_pred             HHhCCCcceEE-EeCC----eEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHHHHhhhhcCCcc
Q psy17455         24 LLKKETLVDLR-SAEG----QYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELKSMIDYMYKGEV   96 (149)
Q Consensus        24 l~~~~~~~Dv~-~~~g----~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~   96 (149)
                      +++++.+|||+ .++|    +.|+|||.||+++|+|     |+++|.+  .+.. ..|.++++++++|+.+|+|+|||++
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~-----F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~   75 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSV-----FYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEI   75 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHH-----HHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHH-----HHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence            57899999999 9988    8999999999999999     9999986  3344 8999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         97 NIAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      .++.+++.+++.+|++|+++.|++.|.+.+..
T Consensus        76 ~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~  107 (109)
T 2vkp_A           76 DLEADTVLATLYAAKKYIVPALAKACVNFLET  107 (109)
T ss_dssp             CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999987654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.90  E-value=6.1e-24  Score=167.28  Aligned_cols=129  Identities=17%  Similarity=0.263  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHHHHhhh
Q psy17455         14 QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELKSMIDY   90 (149)
Q Consensus        14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~ll~f   90 (149)
                      ++.+.+.+.+++.++.+|||+ .++|+.|+|||.|||++|+|     |+++|.+  .+....+|.++++++++|+.+|+|
T Consensus       158 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~-----F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~  232 (312)
T 3hqi_A          158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPV-----FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF  232 (312)
T ss_dssp             CCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHTTC-----CCSEEEECSSCHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHH-----HHHHhccCccccCCceEEecCCCHHHHHHHHHh
Confidence            457889999999999999999 99999999999999999999     9999975  466778999999999999999999


Q ss_pred             hcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCCC
Q psy17455         91 MYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQM  147 (149)
Q Consensus        91 ~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (149)
                      +|||++.+..+++.+++.+|++|++++|++.|+..+...++++++......|...+.
T Consensus       233 iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~  289 (312)
T 3hqi_A          233 IYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSA  289 (312)
T ss_dssp             HHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTC
T ss_pred             hcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999888877765543

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.37  E-value=5.6e-13  Score=88.46  Aligned_cols=75  Identities=24%  Similarity=0.274  Sum_probs=64.1

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCC----CCCCCCeEEeCCCCHHHHHHHhhhhc-----C---Cccc---CC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ----HNDERPILIFSETKFNELKSMIDYMY-----K---GEVN---IA   99 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~ll~f~Y-----t---g~~~---i~   99 (149)
                      ..||++|.+||.| |++|++     |+.||..    .+.....|.|+++++.+++.+++|+|     +   +.+.   ++
T Consensus         8 SsDg~~F~v~r~v-A~~S~~-----ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~   81 (97)
T 4ajy_C            8 SSDGHEFIVKREH-ALTSGT-----IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   81 (97)
T ss_dssp             CTTCCEEEEEHHH-HTTSHH-----HHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCC
T ss_pred             ecCCcEEEecHHH-HHHhHH-----HHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCC
Confidence            5689999999999 999999     9999975    23457799999999999999999999     5   6776   89


Q ss_pred             hhhHHHHHHHHhhcCc
Q psy17455        100 PDELNHFLKAAERLQI  115 (149)
Q Consensus       100 ~~~~~~ll~~A~~l~i  115 (149)
                      .+++.+|+.||++|+.
T Consensus        82 ~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           82 PEIALELLMAANFLDC   97 (97)
T ss_dssp             GGGHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhhCC
Confidence            9999999999999874

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.28  E-value=1.5e-12  Score=92.04  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=81.6

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCc-------------------
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGE-------------------   95 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~-------------------   95 (149)
                      ..+|+.|.+|+.+ |.+|.+     ++.||....  ...|.+++|+..+++.+++|+|...                   
T Consensus         8 SsDg~~f~v~~~v-A~~S~~-----ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i   79 (141)
T 1fs1_B            8 SSDGEIFEVDVEI-AKQSVT-----IKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDI   79 (141)
T ss_dssp             CTTSCEEEEEGGG-GGTCHH-----HHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHHTTCC----------------
T ss_pred             eCCCCEEEecHHH-HHHhHH-----HHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhh
Confidence            4589999999998 899999     999986422  5589999999999999999999865                   


Q ss_pred             -------ccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhh
Q psy17455         96 -------VNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEED  138 (149)
Q Consensus        96 -------~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~  138 (149)
                             +.++.+++.+|+.||++|+|++|.++|...+-..+.-...+++
T Consensus        80 ~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eei  129 (141)
T 1fs1_B           80 PVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI  129 (141)
T ss_dssp             -HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence                   6788899999999999999999999999887666655555443

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.17  E-value=5.3e-12  Score=90.90  Aligned_cols=96  Identities=18%  Similarity=0.209  Sum_probs=52.3

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCc-------------------
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGE-------------------   95 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~-------------------   95 (149)
                      ..+|+.|.+|+.+ |.+|.+     ++.||... .....|.|++|+..+++.|++|+|+..                   
T Consensus        10 SsDg~~f~v~~~v-A~~S~~-----ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~   82 (160)
T 2p1m_A           10 SSDGESFEVEEAV-ALESQT-----IAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD   82 (160)
T ss_dssp             C---------CHH-HHTCTT-----TC-------------CCTTSCHHHHHHHHHC------------------------
T ss_pred             cCCCCEEEECHHH-HHHhHH-----HHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence            4589999999998 889999     88887642 234579999999999999999999976                   


Q ss_pred             --------ccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhh
Q psy17455         96 --------VNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEE  137 (149)
Q Consensus        96 --------~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~  137 (149)
                              +.++.+++.+|+.||++|+|++|.++|...+...+.-...++
T Consensus        83 i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee  132 (160)
T 2p1m_A           83 LKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEE  132 (160)
T ss_dssp             ------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH
Confidence                    357778899999999999999999999988877664433333

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.71  E-value=6.6e-09  Score=68.61  Aligned_cols=75  Identities=23%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCC----CCCCCCeEEeCCCCHHHHHHHhhhhcCCc-----------ccCC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ----HNDERPILIFSETKFNELKSMIDYMYKGE-----------VNIA   99 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~-----------~~i~   99 (149)
                      ..+|+.|.+++.+ |..|.+     ++.|+..    .+.....|.|++++..+++.+++|+|...           ..++
T Consensus         7 SsDg~~f~V~~~~-A~~S~~-----ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd   80 (96)
T 2fnj_C            7 SSDGHEFIVKREH-ALTSGT-----IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   80 (96)
T ss_dssp             CTTSCEEEEEHHH-HTTSHH-----HHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCC
T ss_pred             ecCCCEEEeCHHH-HHHhHH-----HHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccC
Confidence            4589999999997 889999     9999864    23445789999999999999999998743           3678


Q ss_pred             hhhHHHHHHHHhhcCc
Q psy17455        100 PDELNHFLKAAERLQI  115 (149)
Q Consensus       100 ~~~~~~ll~~A~~l~i  115 (149)
                      .+.+.+|+.||++|+|
T Consensus        81 ~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           81 PEIALELLMAANFLDC   96 (96)
T ss_dssp             TTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            8899999999999975

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.69  E-value=1.8e-08  Score=66.86  Aligned_cols=75  Identities=15%  Similarity=0.247  Sum_probs=63.8

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCC-CCCCCCeEEeCCCCHHHHHHHhhhhcCCc--------------ccCC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ-HNDERPILIFSETKFNELKSMIDYMYKGE--------------VNIA   99 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~-~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~--------------~~i~   99 (149)
                      ..+|+.|.+++.+ |..|.+     ++.|+.. .+.....|.|++++..+++.+++|+|...              ..++
T Consensus        10 SsDg~~f~V~~~v-A~~S~~-----ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd   83 (99)
T 1hv2_A           10 SKDDKEYEISRSA-AMISPT-----LKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP   83 (99)
T ss_dssp             ETTTEEEEEEHHH-HTTCHH-----HHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred             ecCCCEEEECHHH-HHHhHH-----HHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence            5699999999997 889999     9999864 23344789999999999999999998743              3577


Q ss_pred             hhhHHHHHHHHhhcCc
Q psy17455        100 PDELNHFLKAAERLQI  115 (149)
Q Consensus       100 ~~~~~~ll~~A~~l~i  115 (149)
                      .+.+.+|+.||++|+|
T Consensus        84 ~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           84 TEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            8899999999999986

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=98.63  E-value=2.9e-08  Score=71.91  Aligned_cols=86  Identities=17%  Similarity=0.299  Sum_probs=70.2

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCC------CCCCeEEeCCCCHHHHHHHhhhhcCCc-------------
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHN------DERPILIFSETKFNELKSMIDYMYKGE-------------   95 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~------~~~~~i~l~~~~~~~~~~ll~f~Ytg~-------------   95 (149)
                      +.+|+.|.+++.+ |..|..     ++.|+....      .....|.|++|+..+|+.|++|+|...             
T Consensus        13 SsDG~~F~V~~~v-A~~S~t-----Ik~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~   86 (169)
T 3v7d_A           13 SGEGERFTVDKKI-AERSLL-----LKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR   86 (169)
T ss_dssp             CTTCCEEEEEHHH-HTTSHH-----HHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred             eCCCCEEEecHHH-HHHhHH-----HHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence            5689999999998 778999     999986421      233789999999999999999996532             


Q ss_pred             ------------ccCChhhHHHHHHHHhhcCccchhhhhhhcc
Q psy17455         96 ------------VNIAPDELNHFLKAAERLQIRGLSESESTTQ  126 (149)
Q Consensus        96 ------------~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~  126 (149)
                                  +.++.+.+.+|+.||++|+|++|.++|...+
T Consensus        87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~v  129 (169)
T 3v7d_A           87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVV  129 (169)
T ss_dssp             -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence                        2466678999999999999999999988765

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.39  E-value=5.6e-07  Score=60.32  Aligned_cols=92  Identities=17%  Similarity=0.266  Sum_probs=71.3

Q ss_pred             CcceEE--EeCCeEEEeeeeeecccCC-CCChHHHHHhcCCC------CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCC
Q psy17455         29 TLVDLR--SAEGQYLKAHKVVLCTCSP-VFEIPLFEMLLSQH------NDERPILIFSETKFNELKSMIDYMYKGEVNIA   99 (149)
Q Consensus        29 ~~~Dv~--~~~g~~~~aHk~vLaa~S~-~~~~~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~   99 (149)
                      .-++++  -|||+.|...+..|+...+ +     |..||...      .....++-+ +-+|..|+.||+|+.+|++.++
T Consensus         3 ~~~~~v~LNVGG~~f~t~~~TL~~~p~s~-----L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p   76 (107)
T 3drz_A            3 SVSKWVRLNVGGTYFLTTRQTLCRDPKSF-----LYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVIN   76 (107)
T ss_dssp             --CCEEEEEETTEEEEEEHHHHTSSTTSH-----HHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCC
T ss_pred             CCCCEEEEEECCEEEEECHHHHhcCCCcc-----hhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCC
Confidence            334555  8999999999999998864 5     67777542      123345555 6899999999999999999876


Q ss_pred             hhh-HHHHHHHHhhcCccchhhhhhhcc
Q psy17455        100 PDE-LNHFLKAAERLQIRGLSESESTTQ  126 (149)
Q Consensus       100 ~~~-~~~ll~~A~~l~i~~L~~~~~~~~  126 (149)
                      .+. ...++.-|.+|+|+.|++.|.+-+
T Consensus        77 ~~~~~~~l~~Ea~fy~l~~L~~~l~~~i  104 (107)
T 3drz_A           77 KDLAEEGVLEEAEFYNITSLIKLVKDKI  104 (107)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            643 477999999999999999988643

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=98.29  E-value=5.3e-07  Score=61.03  Aligned_cols=75  Identities=23%  Similarity=0.225  Sum_probs=61.4

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC----CCCCCeEEeCCCCHHHHHHHhhhhcCCc-----------ccCC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH----NDERPILIFSETKFNELKSMIDYMYKGE-----------VNIA   99 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~----~~~~~~i~l~~~~~~~~~~ll~f~Ytg~-----------~~i~   99 (149)
                      ..+|..|.+++. .|..|..     ++.|+...    +.....|.|++|+..+++.+++|+|...           ..++
T Consensus        23 SsDG~~F~V~~~-~A~~S~t-----Ik~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd   96 (112)
T 1vcb_B           23 SSDGHEFIVKRE-HALTSGT-----IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   96 (112)
T ss_dssp             CTTSCEEEEEHH-HHHTSHH-----HHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred             cCCCCEEEECHH-HHHHhHH-----HHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence            578999999999 5778999     99999742    3334689999999999999999997633           3678


Q ss_pred             hhhHHHHHHHHhhcCc
Q psy17455        100 PDELNHFLKAAERLQI  115 (149)
Q Consensus       100 ~~~~~~ll~~A~~l~i  115 (149)
                      .+.+.+|+.||++|+|
T Consensus        97 ~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           97 PEIALELLMAANFLDC  112 (112)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            8899999999999986

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=97.60  E-value=0.0001  Score=54.56  Aligned_cols=94  Identities=17%  Similarity=0.250  Sum_probs=72.6

Q ss_pred             CCCcceEE--EeCCeEEEeeeeeecccCC-CCChHHHHHhcCCCC------CCCCeEEeCCCCHHHHHHHhhhhcCCccc
Q psy17455         27 KETLVDLR--SAEGQYLKAHKVVLCTCSP-VFEIPLFEMLLSQHN------DERPILIFSETKFNELKSMIDYMYKGEVN   97 (149)
Q Consensus        27 ~~~~~Dv~--~~~g~~~~aHk~vLaa~S~-~~~~~~f~~~f~~~~------~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~   97 (149)
                      .|...+++  -|||+.|...+..|..... +     |..||....      ....++-| |-+|..|+.||+|+-+|++.
T Consensus         7 ~g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~-----L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~   80 (202)
T 3drx_A            7 PGSVSKWVRLNVGGTYFLTTRQTLCRDPKSF-----LYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV   80 (202)
T ss_dssp             SSCCCCEEEEEETTEEEEEETTGGGSCTTSS-----THHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCC
T ss_pred             CCCCCCEEEEEECCEEEEEeHHHHhCCCcch-----HHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccC
Confidence            45667777  8999999999999998764 5     666665321      12344544 57899999999999999998


Q ss_pred             CChhh-HHHHHHHHhhcCccchhhhhhhcc
Q psy17455         98 IAPDE-LNHFLKAAERLQIRGLSESESTTQ  126 (149)
Q Consensus        98 i~~~~-~~~ll~~A~~l~i~~L~~~~~~~~  126 (149)
                      ++.+. ...++.-|.+|+|..|.+.|.+.+
T Consensus        81 lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i  110 (202)
T 3drx_A           81 INKDLAEEGVLEEAEFYNITSLIKLVKDKI  110 (202)
T ss_dssp             CCTTSCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHCCcHHHHHHHHHHH
Confidence            86653 467999999999999999887543

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=96.36  E-value=0.0042  Score=41.81  Aligned_cols=80  Identities=14%  Similarity=0.114  Sum_probs=60.6

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh-hHHHHHHHH
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEVNIAPD-ELNHFLKAA  110 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~-~~~~ll~~A  110 (149)
                      -|||+.|...+..|......+    +..++...   .....++-+ +-+|..|+.||+|+-+|++.++.+ .+..++.-|
T Consensus        10 NVGG~~f~T~~~TL~~~P~s~----L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea   84 (115)
T 3kvt_A           10 NVGGIRHETYKATLKKIPATR----LSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL   84 (115)
T ss_dssp             EETTEEEEEEHHHHTTSCSST----TTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred             EECCEEEEecHHHHhcCCCcc----HHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence            899999999999998775441    34444421   123445555 578999999999999999987764 467899999


Q ss_pred             hhcCccchh
Q psy17455        111 ERLQIRGLS  119 (149)
Q Consensus       111 ~~l~i~~L~  119 (149)
                      .+|+|+...
T Consensus        85 ~fy~i~~~~   93 (115)
T 3kvt_A           85 EFWGLDSNQ   93 (115)
T ss_dssp             HHHTCCGGG
T ss_pred             HHhCCChHH
Confidence            999998864

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=96.33  E-value=0.011  Score=40.29  Aligned_cols=83  Identities=11%  Similarity=0.183  Sum_probs=61.0

Q ss_pred             ceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCC------CCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh-
Q psy17455         31 VDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ------HNDERPILIFSETKFNELKSMIDYMYKGEVNIAPD-  101 (149)
Q Consensus        31 ~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~------~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~-  101 (149)
                      .+++  -|||+.|..-+..|......        +|..      ......++-+ +-++..|+.||+|+-+|++.++.+ 
T Consensus        12 ~~~V~LNVGG~~F~t~~~TL~~~p~S--------~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~   82 (124)
T 1s1g_A           12 DELIVLNVSGRRFQTWRTTLERYPDT--------LLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYE   82 (124)
T ss_dssp             CCEEEEEETTEEEEEEHHHHTTSTTS--------STTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTS
T ss_pred             CCEEEEEeCCEEEEEeHHHHhcCCCc--------eecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCc
Confidence            4555  89999999999999875443        1221      1123344544 569999999999999999987665 


Q ss_pred             hHHHHHHHHhhcCccchh-hhh
Q psy17455        102 ELNHFLKAAERLQIRGLS-ESE  122 (149)
Q Consensus       102 ~~~~ll~~A~~l~i~~L~-~~~  122 (149)
                      .+..++.-|++|+|..+. +.|
T Consensus        83 ~~~~l~~Ea~fy~i~~l~l~~c  104 (124)
T 1s1g_A           83 CISAYDDELAFYGILPEIIGDC  104 (124)
T ss_dssp             CHHHHHHHHHHTTCCGGGBCHH
T ss_pred             CHHHHHHHHHHcCCChHHHHHH
Confidence            478899999999999884 444

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=95.78  E-value=0.021  Score=39.67  Aligned_cols=84  Identities=11%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             cceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCC------CCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh
Q psy17455         30 LVDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ------HNDERPILIFSETKFNELKSMIDYMYKGEVNIAPD  101 (149)
Q Consensus        30 ~~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~------~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~  101 (149)
                      ..+++  -|||+.|...+..|......        +|..      ......++-+ +-++..|+.||+|+-+|++.++.+
T Consensus        33 ~~~~V~LNVGG~~F~T~~~TL~~~P~S--------~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~  103 (140)
T 2nz0_B           33 QDELIVLNVSGRRFQTWRTTLERYPDT--------LLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRY  103 (140)
T ss_dssp             CCCEEEEEETTEEEEEEHHHHHTCTTS--------TTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTT
T ss_pred             CCCEEEEEECCEEEEeeHHHHhcCCCe--------eecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCC
Confidence            34555  89999999999999875443        2221      0123445555 569999999999999999987654


Q ss_pred             -hHHHHHHHHhhcCccchh-hhh
Q psy17455        102 -ELNHFLKAAERLQIRGLS-ESE  122 (149)
Q Consensus       102 -~~~~ll~~A~~l~i~~L~-~~~  122 (149)
                       .+..++.-|++|+|+.+. +.|
T Consensus       104 ~~~~~l~eEa~fy~i~~l~l~~C  126 (140)
T 2nz0_B          104 ECISAYDDELAFYGILPEIIGDC  126 (140)
T ss_dssp             SCHHHHHHHHHHHTCCGGGBCTT
T ss_pred             cCHHHHHHHHHHcCCChHHHHHH
Confidence             478899999999999883 444

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=95.70  E-value=0.018  Score=37.71  Aligned_cols=89  Identities=9%  Similarity=0.070  Sum_probs=60.9

Q ss_pred             EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcC-CcccCChh-hHHHHHHH
Q psy17455         33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYK-GEVNIAPD-ELNHFLKA  109 (149)
Q Consensus        33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Yt-g~~~i~~~-~~~~ll~~  109 (149)
                      |+ -|||+.|...+..|+..-..+....+...- .......++-+ +-++..|+.||+|+-+ |++.++++ .+..++.-
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~-~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~E   80 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNR-YYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE   80 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGG-GEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhcccc-ccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHH
Confidence            44 799999999999997664432222222110 01123455555 5689999999999998 89877654 36789999


Q ss_pred             HhhcCccchh-hhhh
Q psy17455        110 AERLQIRGLS-ESES  123 (149)
Q Consensus       110 A~~l~i~~L~-~~~~  123 (149)
                      |.+|+|..+. +.|.
T Consensus        81 a~fy~i~~~~~~~~~   95 (100)
T 1t1d_A           81 IKFYELGENAFERYR   95 (100)
T ss_dssp             HHHTTCCHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHH
Confidence            9999998864 4443

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=95.27  E-value=0.013  Score=38.68  Aligned_cols=82  Identities=6%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh-hHHHHHH
Q psy17455         33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELKSMIDYMYKGEVNIAPD-ELNHFLK  108 (149)
Q Consensus        33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~-~~~~ll~  108 (149)
                      |+ -|||+.|...+..|......+    +...-..  ......++-+ +-++..|+.||+|+-+|++.++++ .+..++.
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~s~----L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~   76 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPDTL----LGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDE   76 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSS----TTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCCcc----ccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence            45 789999999999888764430    1110000  0112344554 468999999999999999987654 3788999


Q ss_pred             HHhhcCccchh
Q psy17455        109 AAERLQIRGLS  119 (149)
Q Consensus       109 ~A~~l~i~~L~  119 (149)
                      -|++|+|+.+.
T Consensus        77 Ea~fy~i~~l~   87 (105)
T 1nn7_A           77 ELAFFGLIPEI   87 (105)
T ss_dssp             HHHHHTCCSCC
T ss_pred             HHHHcCCCHHH
Confidence            99999999873

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=87.61  E-value=1.2  Score=37.04  Aligned_cols=90  Identities=9%  Similarity=0.093  Sum_probs=61.6

Q ss_pred             CCcceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcC-CcccCChh-hH
Q psy17455         28 ETLVDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYK-GEVNIAPD-EL  103 (149)
Q Consensus        28 ~~~~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Yt-g~~~i~~~-~~  103 (149)
                      ...++.+  -|||+.|...+..|.....-+....++..- .......++-+ |-++..|+.+|.|+.+ |++..+.+ ..
T Consensus        48 ~~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~-~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~  125 (514)
T 2r9r_B           48 HESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMR-YFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPL  125 (514)
T ss_dssp             ---CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGG-GEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCH
T ss_pred             CCCCCEEEEEeCCEEEEecHHHHhcCCCCcccccccCCc-ccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccH
Confidence            3456666  899999999999998765542222232211 01123445555 6799999999999999 99887655 35


Q ss_pred             HHHHHHHhhcCccchh
Q psy17455        104 NHFLKAAERLQIRGLS  119 (149)
Q Consensus       104 ~~ll~~A~~l~i~~L~  119 (149)
                      ..+.+-|++|++..+.
T Consensus       126 ~~~~~E~~f~~i~~~~  141 (514)
T 2r9r_B          126 DIFSEEIRFYELGEEA  141 (514)
T ss_dssp             HHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHhcCCCHHH
Confidence            6688899999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	4e-12
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	4e-11

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 4e-12
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 14  QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERP 72
              ++   N +    TL D+    + Q   AH+ VL   S +FE           +    
Sbjct: 12  PTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE--------ILFHRNSQ 63

Query: 73  ILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
                       + +++Y Y   +    ++L+  L AAE L+I  L E
Sbjct: 64  HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 4e-11
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N L  ++ L D+      +  +AHK VL  CS +F     + L    +        +   
Sbjct: 17  NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--- 73

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
                 ++D+MY   +N+    +   +  A  LQ+  + +
Sbjct: 74  PEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.96
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.95
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	98.1
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	98.03
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	97.09
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	96.88
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	96.14
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	95.4
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	95.0
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	91.66
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	89.3

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.3e-30  Score=175.46  Aligned_cols=116  Identities=21%  Similarity=0.309  Sum_probs=108.6

Q ss_pred             CcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHH
Q psy17455          5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNE   83 (149)
Q Consensus         5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~   83 (149)
                      -..+.++.|++.+++.|+++|.+|.|||++ .++|++|+|||+|||++|+|     |+++|.+   +..++.++++++++
T Consensus         3 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~-----F~~lf~~---~~~~i~~~~v~~~~   74 (121)
T d1buoa_           3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKM-----FEILFHR---NSQHYTLDFLSPKT   74 (121)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHH-----HHHHTTS---CCSEEEECSSCHHH
T ss_pred             eEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChh-----hhhhccC---ccceeecCCCCHHH
Confidence            356788999999999999999999999999 99999999999999999999     9999964   35689999999999


Q ss_pred             HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      |+.+|+|+|||++.++.+++.+++.+|++|++++|++.|.+.+..
T Consensus        75 f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          75 FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999987643

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.3e-29  Score=170.34  Aligned_cols=117  Identities=19%  Similarity=0.328  Sum_probs=106.0

Q ss_pred             ceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC--CCCCCeEEeCCCCHHH
Q psy17455          7 EFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSETKFNE   83 (149)
Q Consensus         7 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~--~~~~~~i~l~~~~~~~   83 (149)
                      ++..+.|+..+++.|+++|+++.||||+ .++|++|+|||+||+++|+|     |+++|...  +.....+.++++++++
T Consensus         2 ~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~-----F~~~f~~~~~e~~~~~~~~~~v~~~~   76 (122)
T d1r29a_           2 QIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGL-----FYSIFTDQLKRNLSVINLDPEINPEG   76 (122)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTSTTTTTCSEEECCTTSCHHH
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHH-----HHHHhccchhhhcceeeeecccCHHH
Confidence            4567789999999999999999999999 99999999999999999999     99999753  3344455567999999


Q ss_pred             HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      |+.+++|+|||++.++.+++.+++.+|++|+++.|++.|.+.+.+
T Consensus        77 f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          77 FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999987654

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=2.5e-06  Score=54.77  Aligned_cols=75  Identities=16%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCC-CCCCCCeEEeCCCCHHHHHHHhhhhcC--------------CcccCC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ-HNDERPILIFSETKFNELKSMIDYMYK--------------GEVNIA   99 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~-~~~~~~~i~l~~~~~~~~~~ll~f~Yt--------------g~~~i~   99 (149)
                      ..+|..|.+.+.+ |..|..     ++.++.. .......|.+++++...++.+++|++-              .+..++
T Consensus        10 SsDg~~f~V~~~~-A~~S~t-----I~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd   83 (99)
T d1hv2a_          10 SKDDKEYEISRSA-AMISPT-----LKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP   83 (99)
T ss_dssp             ETTTEEEEEEHHH-HTTCHH-----HHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred             cCCCCEEEeeHHH-HHHhHH-----HHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCCCCC
Confidence            6689999999888 668999     9998864 334566899999999999999999953              134567


Q ss_pred             hhhHHHHHHHHhhcCc
Q psy17455        100 PDELNHFLKAAERLQI  115 (149)
Q Consensus       100 ~~~~~~ll~~A~~l~i  115 (149)
                      .+.+.+|+.||++|+|
T Consensus        84 ~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          84 TEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhhCC
Confidence            7889999999999986

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.4e-06  Score=54.63  Aligned_cols=75  Identities=24%  Similarity=0.267  Sum_probs=57.1

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCC----CCCCCCeEEeCCCCHHHHHHHhhhhc-----CC------cccCC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ----HNDERPILIFSETKFNELKSMIDYMY-----KG------EVNIA   99 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~ll~f~Y-----tg------~~~i~   99 (149)
                      ..+|..|.+.+.+ |..|..     ++.|+..    .+.....|.+++|+...|+.+++|++     .+      ...++
T Consensus         7 SsDg~~f~V~~~~-A~~S~t-----I~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~   80 (96)
T d2c9wc1           7 SSDGHEFIVKREH-ALTSGT-----IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   80 (96)
T ss_dssp             CTTCCEEEEEHHH-HTTSHH-----HHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCC
T ss_pred             cCCCCEEEeeHHH-HHHhHH-----HHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCC
Confidence            5688999999988 778999     9999864    33456789999999999999999994     22      34577


Q ss_pred             hhhHHHHHHHHhhcCc
Q psy17455        100 PDELNHFLKAAERLQI  115 (149)
Q Consensus       100 ~~~~~~ll~~A~~l~i  115 (149)
                      .+.+.+|+.||++|+.
T Consensus        81 ~~~l~eLi~AAnyLd~   96 (96)
T d2c9wc1          81 PEIALELLMAANFLDC   96 (96)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhhcC
Confidence            8889999999999863

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=97.09  E-value=0.00019  Score=46.01  Aligned_cols=86  Identities=14%  Similarity=0.109  Sum_probs=62.7

Q ss_pred             EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh-hHHHHH
Q psy17455         33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEVNIAPD-ELNHFL  107 (149)
Q Consensus        33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~-~~~~ll  107 (149)
                      |+ -|||+.|...+..|......+    |..++...   ......+-+ +-+|..|+.||+|+-+|++.++++ .+..++
T Consensus         4 I~LNVGG~~F~t~~~tL~~~~~s~----l~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~   78 (103)
T d3kvta_           4 VIINVGGIRHETYKATLKKIPATR----LSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFE   78 (103)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSST----TTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCccch----hHHHHcCCCccCCCCCcEEe-cCCHHHHHHHHHHHccCCcccccccCHHHHH
Confidence            44 799999999999998765541    44444321   133445555 689999999999999999987765 466788


Q ss_pred             HHHhhcCccc-hhhhhh
Q psy17455        108 KAAERLQIRG-LSESES  123 (149)
Q Consensus       108 ~~A~~l~i~~-L~~~~~  123 (149)
                      .-|++|+|+. +.+.|.
T Consensus        79 ~Ea~yygi~~~~l~~Cc   95 (103)
T d3kvta_          79 EELEFWGLDSNQVEPCC   95 (103)
T ss_dssp             HHHHHHTCCGGGBCGGG
T ss_pred             HHHHHcCCCHHHHHHHh
Confidence            8899999964 455553

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.00013  Score=46.96  Aligned_cols=83  Identities=7%  Similarity=0.131  Sum_probs=59.3

Q ss_pred             EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhh-HHHHHHHH
Q psy17455         33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDE-LNHFLKAA  110 (149)
Q Consensus        33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~-~~~ll~~A  110 (149)
                      |+ -|||+.|...+..|+.....+....++..+  ......++-+ +-+|..|+.||+|+-+|++.++++. ...++.-|
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~--~~~~~~~~Fi-DRdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea   78 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFF--YHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEEL   78 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGG--EEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccC--cCCCCCcEEE-eCCHHHHHHHHHHHhcCccccCCCccHHHHHHHH
Confidence            45 799999999999998876652222222111  1123345544 4689999999999999998876653 67788889


Q ss_pred             hhcCccch
Q psy17455        111 ERLQIRGL  118 (149)
Q Consensus       111 ~~l~i~~L  118 (149)
                      ++|+|+.+
T Consensus        79 ~fygi~~~   86 (105)
T d1nn7a_          79 AFFGLIPE   86 (105)
T ss_dssp             HHHTCCSC
T ss_pred             HHcCCCHH
Confidence            99999765

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.14  E-value=0.0047  Score=38.95  Aligned_cols=84  Identities=8%  Similarity=0.067  Sum_probs=57.2

Q ss_pred             EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcC-CcccCChh-hHHHHHHH
Q psy17455         33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYK-GEVNIAPD-ELNHFLKA  109 (149)
Q Consensus        33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Yt-g~~~i~~~-~~~~ll~~  109 (149)
                      |+ -|||+.|.+.+..|......+...++..... ......++-+ +-+|+.|+.||+|+-+ |.+..+.+ .+..++.-
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~-~~~~~g~~Fi-DRdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~E   80 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRY-YDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE   80 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGG-EETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCc-CCCCCCeEEE-ecCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHH
Confidence            45 7999999999999988644322222321110 1234446666 5699999999999987 45555443 36778889


Q ss_pred             HhhcCccch
Q psy17455        110 AERLQIRGL  118 (149)
Q Consensus       110 A~~l~i~~L  118 (149)
                      |++|+|...
T Consensus        81 a~y~gi~~~   89 (100)
T d1t1da_          81 IKFYELGEN   89 (100)
T ss_dssp             HHHTTCCHH
T ss_pred             HHHcCCCHH
Confidence            999999764

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0048  Score=35.40  Aligned_cols=51  Identities=14%  Similarity=0.202  Sum_probs=41.0

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYK   93 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Yt   93 (149)
                      ..+|..|.+-+. .|..|..     .+.|+...  ....|.+++|+...|+.+++|++-
T Consensus         7 SsDg~~f~v~~~-~a~~S~t-----I~~ml~~~--~~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2           7 SSDGEIFEVDVE-IAKQSVT-----IKTMLEDL--GMDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             CTTSCEEEEEGG-GGGTCHH-----HHHHHHHT--CCSSEECTTCCHHHHHHHHHHHHH
T ss_pred             ecCCCEEEecHH-HHHHhHH-----HHHHHhcC--CCCCcccCCcCHHHHHHHHHHHHH
Confidence            568899999887 5666888     88888642  234699999999999999999963

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.008  Score=35.51  Aligned_cols=53  Identities=17%  Similarity=0.335  Sum_probs=39.3

Q ss_pred             EeCCeEEEeeeeeecccCCCCChHHHHHhcCC------CCCCCCeEEeCCCCHHHHHHHhhhhcC
Q psy17455         35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ------HNDERPILIFSETKFNELKSMIDYMYK   93 (149)
Q Consensus        35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~------~~~~~~~i~l~~~~~~~~~~ll~f~Yt   93 (149)
                      ..+|..|.+-+. .|..|..     .+.|+..      .+.....|.+++|+...|+.+++|++-
T Consensus         7 SsDg~~F~v~~~-~a~~S~t-----Ik~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~   65 (72)
T d1nexa2           7 SGEGERFTVDKK-IAERSLL-----LKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEH   65 (72)
T ss_dssp             CTTSCEEEEEHH-HHTTSHH-----HHHTC-------------CEEECTTCCHHHHHHHHHHHHH
T ss_pred             eCCCCEEEecHH-HHHHHHH-----HHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHH
Confidence            568899999887 5666888     8999863      123345799999999999999999953

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.049  Score=30.36  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=27.7

Q ss_pred             cCChhhHHHHHHHHhhcCccchhhhhhhccccC
Q psy17455         97 NIAPDELNHFLKAAERLQIRGLSESESTTQTAV  129 (149)
Q Consensus        97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~  129 (149)
                      .+..+.+.+++.||++++|++|.++|....-..
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~   41 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANM   41 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            467778999999999999999999988766443

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.30  E-value=0.12  Score=30.11  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=27.3

Q ss_pred             cCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455         97 NIAPDELNHFLKAAERLQIRGLSESESTTQTA  128 (149)
Q Consensus        97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~  128 (149)
                      .+..+.+.+++.||++|+|++|.++|....-.
T Consensus        10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~   41 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAE   41 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            35678899999999999999999998876644